sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +==============================================================================+ | gatb-core 1.4.2+dfsg-9 (mipsel) Wed, 27 Jul 2022 15:34:20 +0000 | +==============================================================================+ Package: gatb-core Version: 1.4.2+dfsg-9 Source Version: 1.4.2+dfsg-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-173d66d6-1054-4436-a792-235d4509b4e4' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-CGQbPj/resolver-l4RkAx' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [192 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-27-0804.13-F-2022-07-26-2004.46.pdiff [38.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-27-0804.13-F-2022-07-26-2004.46.pdiff [60.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-07-27-0804.13-F-2022-07-26-2004.46.pdiff [38.2 kB] Get:6 http://localhost:3142/debian sid/main mipsel Packages [8886 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-07-27-0804.13-F-2022-07-26-2004.46.pdiff [60.1 kB] Fetched 9303 kB in 3s (3384 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gatb-core' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatb-core.git Please use: git clone https://salsa.debian.org/med-team/gatb-core.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3044 kB of source archives. Get:1 http://localhost:3142/debian sid/main gatb-core 1.4.2+dfsg-9 (dsc) [2317 B] Get:2 http://localhost:3142/debian sid/main gatb-core 1.4.2+dfsg-9 (tar) [2945 kB] Get:3 http://localhost:3142/debian sid/main gatb-core 1.4.2+dfsg-9 (diff) [97.4 kB] Fetched 3044 kB in 0s (148 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gatb-core-CGQbPj/gatb-core-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-CGQbPj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [451 B] Get:5 copy:/<>/apt_archive ./ Packages [539 B] Fetched 1947 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cmake cmake-data cpp-11-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dpkg-cross dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core g++-11-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-cross-base-mipsen gcc-11-mipsel-linux-gnu gcc-11-mipsel-linux-gnu-base gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.74-dev:mipsel libbrotli1 libbrotli1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang-cpp13 libclang1-13 libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libcurl4:mipsel libcurl4-openssl-dev:mipsel libdatrie1 libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev-mipsel-cross libgcc-12-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2:mipsel libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libhogweed6:mipsel libice6 libicu71 libidn2-0:mipsel libio-string-perl libjbig0 libjpeg-dev:mipsel libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp25 libjsoncpp25:mipsel libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblab-gamut1 libldap-2.5-0 libldap-2.5-0:mipsel liblerc3 libllvm13 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6 libncursesw6 libnettle8:mipsel libnghttp2-14 libnghttp2-14:mipsel libnsl-dev:mipsel libnsl2:mipsel libp11-kit0:mipsel libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpsl5:mipsel librhash0 librtmp1 librtmp1:mipsel libsasl2-2 libsasl2-2:mipsel libsasl2-modules-db libsasl2-modules-db:mipsel libsigsegv2 libsm6 libssh2-1 libssh2-1:mipsel libssl-dev:mipsel libssl3:mipsel libstdc++-11-dev-mipsel-cross libstdc++-12-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libtasn1-6:mipsel libthai-data libthai0 libtiff5 libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libunistring2:mipsel libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf procps sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-11-locales cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch g++-11-multilib-mipsel-linux-gnu gcc-11-doc gcc-11-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc:mipsel libboost1.74-doc:mipsel libboost-atomic1.74-dev:mipsel libboost-chrono1.74-dev:mipsel libboost-container1.74-dev:mipsel libboost-context1.74-dev:mipsel libboost-contract1.74-dev:mipsel libboost-coroutine1.74-dev:mipsel libboost-date-time1.74-dev:mipsel libboost-exception1.74-dev:mipsel libboost-fiber1.74-dev:mipsel libboost-filesystem1.74-dev:mipsel libboost-graph1.74-dev:mipsel libboost-graph-parallel1.74-dev:mipsel libboost-iostreams1.74-dev:mipsel libboost-locale1.74-dev:mipsel libboost-log1.74-dev:mipsel libboost-math1.74-dev:mipsel libboost-mpi1.74-dev:mipsel libboost-mpi-python1.74-dev:mipsel libboost-numpy1.74-dev:mipsel libboost-program-options1.74-dev:mipsel libboost-python1.74-dev:mipsel libboost-random1.74-dev:mipsel libboost-regex1.74-dev:mipsel libboost-serialization1.74-dev:mipsel libboost-stacktrace1.74-dev:mipsel libboost-system1.74-dev:mipsel libboost-test1.74-dev:mipsel libboost-thread1.74-dev:mipsel libboost-timer1.74-dev:mipsel libboost-type-erasure1.74-dev:mipsel libboost-wave1.74-dev:mipsel libboost1.74-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel libboost-nowide1.74-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel manpages-dev:mipsel libcppunit-doc:mipsel libcurl4-doc:mipsel libidn11-dev:mipsel libkrb5-dev:mipsel libldap2-dev:mipsel librtmp-dev:mipsel libssh2-1-dev:mipsel pkg-config:mipsel libgd-tools gnutls-bin:mipsel krb5-doc:mipsel krb5-user:mipsel libhdf5-doc:mipsel libssl-doc:mipsel libstdc++-12-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation2 ca-certificates ca-certificates:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales:mipsel libldap-common libldap-common:mipsel libgpm2 publicsuffix publicsuffix:mipsel libsasl2-modules libsasl2-modules:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cmake cmake-data cpp-11-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism doxygen dpkg-cross dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core g++-11-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-cross-base-mipsen gcc-11-mipsel-linux-gnu gcc-11-mipsel-linux-gnu-base gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-mipsel-linux-gnu gettext gettext-base graphviz groff-base hdf5-helpers:mipsel intltool-debian libaec-dev:mipsel libaec0:mipsel libann0 libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libboost-dev:mipsel libboost1.74-dev:mipsel libbrotli1 libbrotli1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcairo2 libcdt5 libcgraph6 libclang-cpp13 libclang1-13 libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcppunit-1.15-0:mipsel libcppunit-dev:mipsel libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libcurl4:mipsel libcurl4-openssl-dev:mipsel libdatrie1 libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev-mipsel-cross libgcc-12-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgd3 libgfortran5:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgraphite2-3 libgssapi-krb5-2:mipsel libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhdf5-103-1:mipsel libhdf5-cpp-103-1:mipsel libhdf5-dev:mipsel libhdf5-fortran-102:mipsel libhdf5-hl-100:mipsel libhdf5-hl-cpp-100:mipsel libhdf5-hl-fortran-100:mipsel libhogweed6:mipsel libice6 libicu71 libidn2-0:mipsel libio-string-perl libjbig0 libjpeg-dev:mipsel libjpeg62-turbo libjpeg62-turbo:mipsel libjpeg62-turbo-dev:mipsel libjsoncpp-dev:mipsel libjsoncpp25 libjsoncpp25:mipsel libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblab-gamut1 libldap-2.5-0 libldap-2.5-0:mipsel liblerc3 libllvm13 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmd0 libncurses6 libncursesw6 libnettle8:mipsel libnghttp2-14 libnghttp2-14:mipsel libnsl-dev:mipsel libnsl2:mipsel libp11-kit0:mipsel libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpsl5:mipsel librhash0 librtmp1 librtmp1:mipsel libsasl2-2 libsasl2-2:mipsel libsasl2-modules-db libsasl2-modules-db:mipsel libsigsegv2 libsm6 libssh2-1 libssh2-1:mipsel libssl-dev:mipsel libssl3:mipsel libstdc++-11-dev-mipsel-cross libstdc++-12-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libsz2:mipsel libtasn1-6:mipsel libthai-data libthai0 libtiff5 libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libunistring2:mipsel libuv1 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libz3-4 libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:mipsel sensible-utils ucf x11-common zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 219 newly installed, 0 to remove and 0 not upgraded. Need to get 174 MB of archives. After this operation, 804 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncurses6 amd64 6.3+20220423-2 [102 kB] Get:4 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:5 http://localhost:3142/debian sid/main amd64 libprocps8 amd64 2:3.3.17-7+b1 [64.2 kB] Get:6 http://localhost:3142/debian sid/main amd64 procps amd64 2:3.3.17-7+b1 [502 kB] Get:7 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:9 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:10 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:11 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-6 [175 kB] Get:12 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:13 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:14 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38-5 [144 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-1 [38.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-1 [1411 kB] Get:17 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://localhost:3142/debian sid/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:19 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:21 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:23 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-6 [510 kB] Get:24 http://localhost:3142/debian sid/main amd64 binutils-mipsel-linux-gnu amd64 2.38-1cross2 [2725 kB] Get:25 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:26 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:27 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.0-1 [350 kB] Get:28 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:29 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6 [38.4 kB] Get:30 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6 [77.3 kB] Get:31 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2 [227 kB] Get:32 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.48.0-1 [83.4 kB] Get:33 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:34 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:35 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:36 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.84.0-2 [360 kB] Get:37 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:38 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:40 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.1-2 [138 kB] Get:41 http://localhost:3142/debian sid/main amd64 dh-elpa-helper all 2.0.10 [11.3 kB] Get:42 http://localhost:3142/debian sid/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:43 http://localhost:3142/debian sid/main amd64 cmake-data all 3.23.2-1 [1939 kB] Get:44 http://localhost:3142/debian sid/main amd64 cmake amd64 3.23.2-1 [8209 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-11-mipsel-linux-gnu-base amd64 11.2.0-18cross2 [208 kB] Get:46 http://localhost:3142/debian sid/main amd64 cpp-11-mipsel-linux-gnu amd64 11.2.0-18cross2 [7500 kB] Get:47 http://localhost:3142/debian sid/main amd64 cpp-mipsel-linux-gnu amd64 4:11.2.0-2 [16.9 kB] Get:48 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:49 http://localhost:3142/debian sid/main amd64 gcc-11-cross-base-mipsen all 11.2.0-18cross2 [203 kB] Get:50 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12-20220319-1cross2 [202 kB] Get:51 http://localhost:3142/debian sid/main amd64 libc6-mipsel-cross all 2.33-1cross1 [1208 kB] Get:52 http://localhost:3142/debian sid/main amd64 libgcc-s1-mipsel-cross all 12-20220319-1cross2 [46.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libgomp1-mipsel-cross all 12-20220319-1cross2 [105 kB] Get:54 http://localhost:3142/debian sid/main amd64 libatomic1-mipsel-cross all 12-20220319-1cross2 [6444 B] Get:55 http://localhost:3142/debian sid/main amd64 libgcc-11-dev-mipsel-cross all 11.2.0-18cross2 [255 kB] Get:56 http://localhost:3142/debian sid/main amd64 gcc-11-mipsel-linux-gnu amd64 11.2.0-18cross2 [14.6 MB] Get:57 http://localhost:3142/debian sid/main amd64 gcc-mipsel-linux-gnu amd64 4:11.2.0-2 [1448 B] Get:58 http://localhost:3142/debian sid/main amd64 libstdc++6-mipsel-cross all 12-20220319-1cross2 [501 kB] Get:59 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mipsel-cross all 5.15.5-1cross1 [1566 kB] Get:60 http://localhost:3142/debian sid/main amd64 libc6-dev-mipsel-cross all 2.33-1cross1 [1939 kB] Get:61 http://localhost:3142/debian sid/main amd64 libstdc++-11-dev-mipsel-cross all 11.2.0-18cross2 [1964 kB] Get:62 http://localhost:3142/debian sid/main amd64 g++-11-mipsel-linux-gnu amd64 11.2.0-18cross2 [8338 kB] Get:63 http://localhost:3142/debian sid/main amd64 g++-mipsel-linux-gnu amd64 4:11.2.0-2 [1172 B] Get:64 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:71 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:72 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:73 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:76 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:78 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB] Get:79 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.8 [195 kB] Get:80 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:81 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:82 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:83 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:84 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:85 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:86 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-1 [179 kB] Get:87 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:88 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-6 [1310 kB] Get:89 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:91 http://localhost:3142/debian sid/main amd64 debhelper all 13.8 [1070 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:93 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.11.6-1 [114 kB] Get:94 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20210910-1 [97.5 kB] Get:95 http://localhost:3142/debian sid/main amd64 libz3-4 amd64 4.8.12-1+b1 [6997 kB] Get:96 http://localhost:3142/debian sid/main amd64 libllvm13 amd64 1:13.0.1-7 [20.2 MB] Get:97 http://localhost:3142/debian sid/main amd64 libclang-cpp13 amd64 1:13.0.1-7 [10.7 MB] Get:98 http://localhost:3142/debian sid/main amd64 libclang1-13 amd64 1:13.0.1-7 [6191 kB] Get:99 http://localhost:3142/debian sid/main amd64 libxapian30 amd64 1.4.20-2 [1092 kB] Get:100 http://localhost:3142/debian sid/main amd64 doxygen amd64 1.9.4-2 [4570 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpng16-16 amd64 1.6.37-5 [290 kB] Get:102 http://localhost:3142/debian sid/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [420 kB] Get:103 http://localhost:3142/debian sid/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:104 http://localhost:3142/debian sid/main amd64 fontconfig-config all 2.13.1-4.4 [281 kB] Get:105 http://localhost:3142/debian sid/main amd64 libfontconfig1 amd64 2.13.1-4.4 [350 kB] Get:106 http://localhost:3142/debian sid/main amd64 fontconfig amd64 2.13.1-4.4 [417 kB] Get:107 http://localhost:3142/debian sid/main mipsel gcc-12-base mipsel 12.1.0-7 [207 kB] Get:108 http://localhost:3142/debian sid/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:109 http://localhost:3142/debian sid/main amd64 libcdt5 amd64 2.42.2-7 [62.2 kB] Get:110 http://localhost:3142/debian sid/main amd64 libcgraph6 amd64 2.42.2-7 [86.1 kB] Get:111 http://localhost:3142/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.2-1 [164 kB] Get:112 http://localhost:3142/debian sid/main amd64 libdeflate0 amd64 1.12-1 [71.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 liblerc3 amd64 3.0+ds-1 [115 kB] Get:115 http://localhost:3142/debian sid/main amd64 libwebp7 amd64 1.2.2-2+b1 [277 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtiff5 amd64 4.4.0-3 [312 kB] Get:117 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:118 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:119 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:120 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.7.5-1 [308 kB] Get:121 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.7.5-1 [774 kB] Get:122 http://localhost:3142/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:123 http://localhost:3142/debian sid/main amd64 libgd3 amd64 2.3.3-6 [135 kB] Get:124 http://localhost:3142/debian sid/main amd64 libglib2.0-0 amd64 2.72.3-1 [1429 kB] Get:125 http://localhost:3142/debian sid/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5 [159 kB] Get:126 http://localhost:3142/debian sid/main amd64 libpixman-1-0 amd64 0.40.0-1 [543 kB] Get:127 http://localhost:3142/debian sid/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:128 http://localhost:3142/debian sid/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:129 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1 [53.1 kB] Get:130 http://localhost:3142/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:131 http://localhost:3142/debian sid/main amd64 libcairo2 amd64 1.16.0-6 [587 kB] Get:132 http://localhost:3142/debian sid/main amd64 libltdl7 amd64 2.4.7-4 [402 kB] Get:133 http://localhost:3142/debian sid/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:134 http://localhost:3142/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:135 http://localhost:3142/debian sid/main amd64 libharfbuzz0b amd64 2.7.4-1+b1 [1469 kB] Get:136 http://localhost:3142/debian sid/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:137 http://localhost:3142/debian sid/main amd64 libdatrie1 amd64 0.2.13-2 [43.0 kB] Get:138 http://localhost:3142/debian sid/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:139 http://localhost:3142/debian sid/main amd64 libpango-1.0-0 amd64 1.50.7+ds-1 [238 kB] Get:140 http://localhost:3142/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.50.7+ds-1 [76.9 kB] Get:141 http://localhost:3142/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.50.7+ds-1 [64.0 kB] Get:142 http://localhost:3142/debian sid/main amd64 libpathplan4 amd64 2.42.2-7 [64.3 kB] Get:143 http://localhost:3142/debian sid/main amd64 libgvc6 amd64 2.42.2-7 [696 kB] Get:144 http://localhost:3142/debian sid/main amd64 libgvpr2 amd64 2.42.2-7 [212 kB] Get:145 http://localhost:3142/debian sid/main amd64 liblab-gamut1 amd64 2.42.2-7 [221 kB] Get:146 http://localhost:3142/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:147 http://localhost:3142/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:148 http://localhost:3142/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:149 http://localhost:3142/debian sid/main amd64 libxt6 amd64 1:1.2.1-1 [189 kB] Get:150 http://localhost:3142/debian sid/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get:151 http://localhost:3142/debian sid/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get:152 http://localhost:3142/debian sid/main amd64 graphviz amd64 2.42.2-7 [636 kB] Get:153 http://localhost:3142/debian sid/main mipsel hdf5-helpers mipsel 1.10.7+repack-4+b1 [43.2 kB] Get:154 http://localhost:3142/debian sid/main mipsel libgcc-s1 mipsel 12.1.0-7 [46.3 kB] Get:155 http://localhost:3142/debian sid/main mipsel libc6 mipsel 2.33-8 [2506 kB] Get:156 http://localhost:3142/debian sid/main mipsel libaec0 mipsel 1.0.6-1 [20.4 kB] Get:157 http://localhost:3142/debian sid/main mipsel libsz2 mipsel 1.0.6-1 [7288 B] Get:158 http://localhost:3142/debian sid/main mipsel libaec-dev mipsel 1.0.6-1 [19.9 kB] Get:159 http://localhost:3142/debian sid/main mipsel libatomic1 mipsel 12.1.0-7 [6712 B] Get:160 http://localhost:3142/debian sid/main mipsel libgomp1 mipsel 12.1.0-7 [107 kB] Get:161 http://localhost:3142/debian sid/main mipsel libgcc-12-dev mipsel 12.1.0-7 [267 kB] Get:162 http://localhost:3142/debian sid/main mipsel libstdc++6 mipsel 12.1.0-7 [541 kB] Get:163 http://localhost:3142/debian sid/main mipsel linux-libc-dev mipsel 5.18.14-1 [1603 kB] Get:164 http://localhost:3142/debian sid/main mipsel libcrypt1 mipsel 1:4.4.28-2 [113 kB] Get:165 http://localhost:3142/debian sid/main mipsel libcrypt-dev mipsel 1:4.4.28-2 [144 kB] Get:166 http://localhost:3142/debian sid/main mipsel libcom-err2 mipsel 1.46.5-2 [75.3 kB] Get:167 http://localhost:3142/debian sid/main mipsel libkrb5support0 mipsel 1.20-1 [64.9 kB] Get:168 http://localhost:3142/debian sid/main mipsel libk5crypto3 mipsel 1.20-1 [117 kB] Get:169 http://localhost:3142/debian sid/main mipsel libkeyutils1 mipsel 1.6.3-1 [15.2 kB] Get:170 http://localhost:3142/debian sid/main mipsel libssl3 mipsel 3.0.5-1 [1538 kB] Get:171 http://localhost:3142/debian sid/main mipsel libkrb5-3 mipsel 1.20-1 [336 kB] Get:172 http://localhost:3142/debian sid/main mipsel libgssapi-krb5-2 mipsel 1.20-1 [151 kB] Get:173 http://localhost:3142/debian sid/main mipsel libtirpc3 mipsel 1.3.2-2 [74.0 kB] Get:174 http://localhost:3142/debian sid/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:175 http://localhost:3142/debian sid/main mipsel libtirpc-dev mipsel 1.3.2-2 [197 kB] Get:176 http://localhost:3142/debian sid/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:177 http://localhost:3142/debian sid/main mipsel libc6-dev mipsel 2.33-8 [1934 kB] Get:178 http://localhost:3142/debian sid/main mipsel libstdc++-12-dev mipsel 12.1.0-7 [2061 kB] Get:179 http://localhost:3142/debian sid/main mipsel libboost1.74-dev mipsel 1.74.0-16.1+b1 [9539 kB] Get:180 http://localhost:3142/debian sid/main mipsel libboost-dev mipsel 1.74.0.3 [4548 B] Get:181 http://localhost:3142/debian sid/main mipsel libbrotli1 mipsel 1.0.9-2+b4 [285 kB] Get:182 http://localhost:3142/debian sid/main mipsel libcppunit-1.15-0 mipsel 1.15.1-4 [146 kB] Get:183 http://localhost:3142/debian sid/main mipsel libcppunit-dev mipsel 1.15.1-4 [217 kB] Get:184 http://localhost:3142/debian sid/main mipsel libunistring2 mipsel 1.0-1 [397 kB] Get:185 http://localhost:3142/debian sid/main mipsel libidn2-0 mipsel 2.3.3-1 [122 kB] Get:186 http://localhost:3142/debian sid/main mipsel libgmp10 mipsel 2:6.2.1+dfsg1-1 [534 kB] Get:187 http://localhost:3142/debian sid/main mipsel libnettle8 mipsel 3.7.3-1 [292 kB] Get:188 http://localhost:3142/debian sid/main mipsel libhogweed6 mipsel 3.7.3-1 [312 kB] Get:189 http://localhost:3142/debian sid/main mipsel libffi8 mipsel 3.4.2-4 [21.5 kB] Get:190 http://localhost:3142/debian sid/main mipsel libp11-kit0 mipsel 0.24.1-1 [296 kB] Get:191 http://localhost:3142/debian sid/main mipsel libtasn1-6 mipsel 4.18.0-4 [53.2 kB] Get:192 http://localhost:3142/debian sid/main mipsel libgnutls30 mipsel 3.7.6-2 [1240 kB] Get:193 http://localhost:3142/debian sid/main mipsel libdb5.3 mipsel 5.3.28+dfsg1-0.10 [602 kB] Get:194 http://localhost:3142/debian sid/main mipsel libsasl2-modules-db mipsel 2.1.28+dfsg-6 [37.7 kB] Get:195 http://localhost:3142/debian sid/main mipsel libsasl2-2 mipsel 2.1.28+dfsg-6 [72.9 kB] Get:196 http://localhost:3142/debian sid/main mipsel libldap-2.5-0 mipsel 2.5.12+dfsg-2 [202 kB] Get:197 http://localhost:3142/debian sid/main mipsel libnghttp2-14 mipsel 1.48.0-1 [79.4 kB] Get:198 http://localhost:3142/debian sid/main mipsel libpsl5 mipsel 0.21.0-1.2 [57.0 kB] Get:199 http://localhost:3142/debian sid/main mipsel zlib1g mipsel 1:1.2.11.dfsg-4 [88.5 kB] Get:200 http://localhost:3142/debian sid/main mipsel librtmp1 mipsel 2.4+20151223.gitfa8646d.1-2+b2 [55.7 kB] Get:201 http://localhost:3142/debian sid/main mipsel libssh2-1 mipsel 1.10.0-3+b1 [170 kB] Get:202 http://localhost:3142/debian sid/main mipsel libzstd1 mipsel 1.5.2+dfsg-1 [271 kB] Get:203 http://localhost:3142/debian sid/main mipsel libcurl4 mipsel 7.84.0-2 [341 kB] Get:204 http://localhost:3142/debian sid/main mipsel libcurl4-openssl-dev mipsel 7.84.0-2 [476 kB] Get:205 http://localhost:3142/debian sid/main mipsel libgfortran5 mipsel 12.1.0-7 [270 kB] Get:206 http://localhost:3142/debian sid/main mipsel libhdf5-103-1 mipsel 1.10.7+repack-4+b1 [913 kB] Get:207 http://localhost:3142/debian sid/main mipsel libhdf5-cpp-103-1 mipsel 1.10.7+repack-4+b1 [128 kB] Get:208 http://localhost:3142/debian sid/main mipsel libhdf5-fortran-102 mipsel 1.10.7+repack-4+b1 [100 kB] Get:209 http://localhost:3142/debian sid/main mipsel libhdf5-hl-100 mipsel 1.10.7+repack-4+b1 [85.6 kB] Get:210 http://localhost:3142/debian sid/main mipsel libhdf5-hl-fortran-100 mipsel 1.10.7+repack-4+b1 [53.4 kB] Get:211 http://localhost:3142/debian sid/main mipsel libhdf5-hl-cpp-100 mipsel 1.10.7+repack-4+b1 [40.7 kB] Get:212 http://localhost:3142/debian sid/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-4 [191 kB] Get:213 http://localhost:3142/debian sid/main mipsel libjpeg62-turbo mipsel 1:2.1.2-1 [149 kB] Get:214 http://localhost:3142/debian sid/main mipsel libjpeg62-turbo-dev mipsel 1:2.1.2-1 [273 kB] Get:215 http://localhost:3142/debian sid/main mipsel libjpeg-dev mipsel 1:2.1.2-1 [74.7 kB] Get:216 http://localhost:3142/debian sid/main mipsel libssl-dev mipsel 3.0.5-1 [2285 kB] Get:217 http://localhost:3142/debian sid/main mipsel libhdf5-dev mipsel 1.10.7+repack-4+b1 [2580 kB] Get:218 http://localhost:3142/debian sid/main mipsel libjsoncpp25 mipsel 1.9.5-4 [73.1 kB] Get:219 http://localhost:3142/debian sid/main mipsel libjsoncpp-dev mipsel 1.9.5-4 [26.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 174 MB in 1s (169 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13623 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.3+20220423-2_amd64.deb ... Unpacking libncurses6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../002-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-7+b1_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-7+b1) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-7+b1_amd64.deb ... Unpacking procps (2:3.3.17-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-6_amd64.deb ... Unpacking gettext-base (0.21-6) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-8_amd64.deb ... Unpacking groff-base (1.22.4-8) ... 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Setting up gcc-11-cross-base-mipsen (11.2.0-18cross2) ... Setting up bsdextrautils (2.38-5) ... Setting up hdf5-helpers:mipsel (1.10.7+repack-4+b1) ... Setting up libdatrie1:amd64 (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.72.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.8) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up liblab-gamut1:amd64 (2.42.2-7) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.48.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up libdeflate0:amd64 (1.12-1) ... Setting up gcc-12-cross-base-mipsen (12-20220319-1cross2) ... Setting up linux-libc-dev:mipsel (5.18.14-1) ... Setting up libc6-mipsel-cross (2.33-1cross1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-6) ... Setting up libatomic1-mipsel-cross (12-20220319-1cross2) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up gcc-12-base:mipsel (12.1.0-7) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-1+b1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libuv1:amd64 (1.44.1-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.2-1) ... Setting up emacsen-common (3.0.4) ... Setting up cpp-11-mipsel-linux-gnu (11.2.0-18cross2) ... Setting up libx11-data (2:1.7.5-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.10) ... Setting up liblerc3:amd64 (3.0+ds-1) ... Setting up binutils-mipsel-linux-gnu (2.38-1cross2) ... Setting up libpathplan4:amd64 (2.42.2-7) ... Setting up cpp-mipsel-linux-gnu (4:11.2.0-2) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up libsigsegv2:amd64 (2.14-1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libgomp1-mipsel-cross (12-20220319-1cross2) ... Setting up autopoint (0.21-6) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.104) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libltdl7:amd64 (2.4.7-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6) ... Setting up libwebp7:amd64 (1.2.2-2+b1) ... Setting up libmd0:amd64 (1.0.4-2) ... Setting up linux-libc-dev-mipsel-cross (5.15.5-1cross1) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.23.2-1) ... Setting up libcdt5:amd64 (2.42.2-7) ... Setting up libcgraph6:amd64 (2.42.2-7) ... Setting up libtiff5:amd64 (4.4.0-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libprocps8:amd64 (2:3.3.17-7+b1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-6) ... Setting up libc6-dev-mipsel-cross (2.33-1cross1) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:amd64 (3.6.0-1) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libgcc-s1-mipsel-cross (12-20220319-1cross2) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libllvm13:amd64 (1:13.0.1-7) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libgvpr2:amd64 (2.42.2-7) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-7+b1) ... Setting up libcurl4:amd64 (7.84.0-2) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1+b1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libgcc-11-dev-mipsel-cross (11.2.0-18cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libstdc++6-mipsel-cross (12-20220319-1cross2) ... Setting up fontconfig-config (2.13.1-4.4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up gcc-11-mipsel-linux-gnu (11.2.0-18cross2) ... Setting up libstdc++-11-dev-mipsel-cross (11.2.0-18cross2) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up g++-11-mipsel-linux-gnu (11.2.0-18cross2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up gcc-mipsel-linux-gnu (4:11.2.0-2) ... Setting up libclang1-13 (1:13.0.1-7) ... Setting up libclang-cpp13 (1:13.0.1-7) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.23.2-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up debhelper (13.8) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up g++-mipsel-linux-gnu (4:11.2.0-2) ... Setting up doxygen (1.9.4-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libgcc-s1:mipsel (12.1.0-7) ... Setting up libc6:mipsel (2.33-8) ... Setting up libffi8:mipsel (3.4.2-4) ... Setting up libtasn1-6:mipsel (4.18.0-4) ... Setting up libdb5.3:mipsel (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:mipsel (12.1.0-7) ... Setting up libcppunit-1.15-0:mipsel (1.15.1-4) ... Setting up libzstd1:mipsel (1.5.2+dfsg-1) ... Setting up libkeyutils1:mipsel (1.6.3-1) ... Setting up libbrotli1:mipsel (1.0.9-2+b4) ... Setting up libnghttp2-14:mipsel (1.48.0-1) ... Setting up libunistring2:mipsel (1.0-1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-4) ... Setting up libcrypt1:mipsel (1:4.4.28-2) ... Setting up libidn2-0:mipsel (2.3.3-1) ... Setting up libcom-err2:mipsel (1.46.5-2) ... Setting up libgomp1:mipsel (12.1.0-7) ... Setting up libaec0:mipsel (1.0.6-1) ... Setting up libkrb5support0:mipsel (1.20-1) ... Setting up libsasl2-modules-db:mipsel (2.1.28+dfsg-6) ... Setting up libjpeg62-turbo:mipsel (1:2.1.2-1) ... Setting up libnettle8:mipsel (3.7.3-1) ... Setting up libgmp10:mipsel (2:6.2.1+dfsg1-1) ... Setting up libp11-kit0:mipsel (0.24.1-1) ... Setting up libatomic1:mipsel (12.1.0-7) ... Setting up libjsoncpp25:mipsel (1.9.5-4) ... Setting up libk5crypto3:mipsel (1.20-1) ... Setting up libsasl2-2:mipsel (2.1.28+dfsg-6) ... Setting up libgfortran5:mipsel (12.1.0-7) ... Setting up libcrypt-dev:mipsel (1:4.4.28-2) ... Setting up libcppunit-dev:mipsel (1.15.1-4) ... Setting up libsz2:mipsel (1.0.6-1) ... Setting up libjsoncpp-dev:mipsel (1.9.5-4) ... Setting up libpsl5:mipsel (0.21.0-1.2) ... Setting up libhogweed6:mipsel (3.7.3-1) ... Setting up libaec-dev:mipsel (1.0.6-1) ... Setting up libssl3:mipsel (3.0.5-1) ... Setting up libgnutls30:mipsel (3.7.6-2) ... Setting up librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgcc-12-dev:mipsel (12.1.0-7) ... Setting up libssl-dev:mipsel (3.0.5-1) ... Setting up libssh2-1:mipsel (1.10.0-3+b1) ... Setting up libkrb5-3:mipsel (1.20-1) ... Setting up libldap-2.5-0:mipsel (2.5.12+dfsg-2) ... Setting up libgssapi-krb5-2:mipsel (1.20-1) ... Setting up libcurl4:mipsel (7.84.0-2) ... Setting up libtirpc3:mipsel (1.3.2-2) ... Setting up libtirpc-dev:mipsel (1.3.2-2) ... Setting up libcurl4-openssl-dev:mipsel (7.84.0-2) ... Setting up libhdf5-103-1:mipsel (1.10.7+repack-4+b1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libhdf5-cpp-103-1:mipsel (1.10.7+repack-4+b1) ... Setting up libhdf5-hl-100:mipsel (1.10.7+repack-4+b1) ... Setting up libhdf5-hl-cpp-100:mipsel (1.10.7+repack-4+b1) ... Setting up libhdf5-fortran-102:mipsel (1.10.7+repack-4+b1) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libhdf5-hl-fortran-100:mipsel (1.10.7+repack-4+b1) ... Setting up libc6-dev:mipsel (2.33-8) ... Setting up libstdc++-12-dev:mipsel (12.1.0-7) ... Setting up libjpeg62-turbo-dev:mipsel (1:2.1.2-1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-4) ... Setting up libboost1.74-dev:mipsel (1.74.0-16.1+b1) ... Setting up libjpeg-dev:mipsel (1:2.1.2-1) ... Setting up libhdf5-dev:mipsel (1.10.7+repack-4+b1) ... update-alternatives: using /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/mipsel-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libboost-dev:mipsel (1.74.0.3) ... Processing triggers for libc-bin (2.33-8) ... Processing triggers for sgml-base (1.30) ... Setting up libfontconfig1:amd64 (2.13.1-4.4) ... Setting up fontconfig (2.13.1-4.4) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libcairo2:amd64 (1.16.0-6) ... Setting up libgd3:amd64 (2.3.3-6) ... Setting up libpangoft2-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libgvc6 (2.42.2-7) ... Setting up graphviz (2.42.2-7) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.33-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-11_11.3.0-5 g++-12_12.1.0-7 gcc-11_11.3.0-5 gcc-12_12.1.0-7 libc6-dev_2.33-8 libstdc++-11-dev_11.3.0-5 libstdc++-11-dev-mipsel-cross_11.2.0-18cross2 libstdc++-12-dev_12.1.0-7 libstdc++6_12.1.0-7 libstdc++6-mipsel-cross_12-20220319-1cross2 linux-libc-dev_5.18.14-1 Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-mipsel-linux-gnu_2.38-1cross2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38-5 bsdutils_1:2.38-5 build-essential_12.9 bzip2_1.0.8-5 cmake_3.23.2-1 cmake-data_3.23.2-1 coreutils_8.32-4.1 cpp_4:12.1.0-3 cpp-11_11.3.0-5 cpp-11-mipsel-linux-gnu_11.2.0-18cross2 cpp-12_12.1.0-7 cpp-mipsel-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-mipsel_12.9 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.8 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 doxygen_1.9.4-2 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:12.1.0-3 g++-11_11.3.0-5 g++-11-mipsel-linux-gnu_11.2.0-18cross2 g++-12_12.1.0-7 g++-mipsel-linux-gnu_4:11.2.0-2 gcc_4:12.1.0-3 gcc-11_11.3.0-5 gcc-11-base_11.3.0-5 gcc-11-cross-base-mipsen_11.2.0-18cross2 gcc-11-mipsel-linux-gnu_11.2.0-18cross2 gcc-11-mipsel-linux-gnu-base_11.2.0-18cross2 gcc-12_12.1.0-7 gcc-12-base_12.1.0-7 gcc-12-cross-base-mipsen_12-20220319-1cross2 gcc-9-base_9.5.0-1 gcc-mipsel-linux-gnu_4:11.2.0-2 gettext_0.21-6 gettext-base_0.21-6 gpgv_2.2.35-3 graphviz_2.42.2-7 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hdf5-helpers_1.10.7+repack-4+b1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libann0_1.1.2+doc-7 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan6_11.3.0-5 libasan8_12.1.0-7 libatomic1_12.1.0-7 libatomic1-mipsel-cross_12-20220319-1cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38-5 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-16.1+b1 libbrotli1_1.0.9-2+b4 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-8 libc-dev-bin_2.33-8 libc6_2.33-8 libc6-dev_2.33-8 libc6-dev-mipsel-cross_2.33-1cross1 libc6-mipsel-cross_2.33-1cross1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.1.0-7 libcdt5_2.42.2-7 libcgraph6_2.42.2-7 libclang-cpp13_1:13.0.1-7 libclang1-13_1:13.0.1-7 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcppunit-1.15-0_1.15.1-4 libcppunit-dev_1.15.1-4 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libcurl4_7.84.0-2 libcurl4-openssl-dev_7.84.0-2 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.8 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate0_1.12-1 libdpkg-perl_1.21.9 libedit2_3.1-20210910-1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-11-dev_11.3.0-5 libgcc-11-dev-mipsel-cross_11.2.0-18cross2 libgcc-12-dev_12.1.0-7 libgcc-s1_12.1.0-7 libgcc-s1-mipsel-cross_12-20220319-1cross2 libgcrypt20_1.10.1-2 libgd3_2.3.3-6 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-7 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.6-2 libgomp1_12.1.0-7 libgomp1-mipsel-cross_12-20220319-1cross2 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libgts-0.7-5_0.7.6+darcs121130-5 libgvc6_2.42.2-7 libgvpr2_2.42.2-7 libharfbuzz0b_2.7.4-1+b1 libhdf5-103-1_1.10.7+repack-4+b1 libhdf5-cpp-103-1_1.10.7+repack-4+b1 libhdf5-dev_1.10.7+repack-4+b1 libhdf5-fortran-102_1.10.7+repack-4+b1 libhdf5-hl-100_1.10.7+repack-4+b1 libhdf5-hl-cpp-100_1.10.7+repack-4+b1 libhdf5-hl-fortran-100_1.10.7+repack-4+b1 libhogweed6_3.7.3-1 libice6_2:1.0.10-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.1.0-7 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblab-gamut1_2.42.2-7 libldap-2.5-0_2.5.12+dfsg-2 liblerc3_3.0+ds-1 libllvm13_1:13.0.1-7 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.1.0-7 libltdl7_2.4.7-4 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38-5 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnghttp2-14_1.48.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpango-1.0-0_1.50.7+ds-1 libpangocairo-1.0-0_1.50.7+ds-1 libpangoft2-1.0-0_1.50.7+ds-1 libpathplan4_2.42.2-7 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-1 libpixman-1-0_0.40.0-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-7+b1 libpsl5_0.21.0-1.2 libquadmath0_12.1.0-7 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-6 libsasl2-modules-db_2.1.28+dfsg-6 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsm6_2:1.2.3-1 libsmartcols1_2.38-5 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.5-1 libssl3_3.0.5-1 libstdc++-11-dev_11.3.0-5 libstdc++-11-dev-mipsel-cross_11.2.0-18cross2 libstdc++-12-dev_12.1.0-7 libstdc++6_12.1.0-7 libstdc++6-mipsel-cross_12-20220319-1cross2 libsub-override-perl_0.09-3 libsystemd0_251.3-1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-4 libtsan0_11.3.0-5 libtsan2_12.1.0-7 libubsan1_12.1.0-7 libuchardet0_0.0.7-1 libudev1_251.3-1 libunistring2_1.0-1 libuuid1_2.38-5 libuv1_1.44.1-2 libwebp7_1.2.2-2+b1 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libxapian30_1.4.20-2 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1.1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libz3-4_4.8.12-1+b1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1 linux-libc-dev-mipsel-cross_5.15.5-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-5 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7+b1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 util-linux_2.38-5 util-linux-extra_2.38-5 x11-common_1:7.7+23 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: gatb-core Binary: gatb-core, libgatbcore3, libgatbcore-dev, gatb-core-testdata Architecture: any all Version: 1.4.2+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Nadiya Sitdykova , Andreas Tille Homepage: https://github.com/GATB/gatb-core Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/gatb-core Vcs-Git: https://salsa.debian.org/med-team/gatb-core.git Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Package-List: gatb-core deb science optional arch=any gatb-core-testdata deb science optional arch=all libgatbcore-dev deb libdevel optional arch=any libgatbcore3 deb libs optional arch=any Checksums-Sha1: cd277a39a042d1b5b3dfdf0b0196b748b7fdb301 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz a2b76009a9c272ae7c567f4f7217b517641ed6ec 97408 gatb-core_1.4.2+dfsg-9.debian.tar.xz Checksums-Sha256: cc72101654da4254253c3c74f02651e3b2cfbf49af95a849d21efdb13481fc66 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 61e76abf2bcc2750274d653dc5a434e342de662cb65f7f0e1dd14d1385984e26 97408 gatb-core_1.4.2+dfsg-9.debian.tar.xz Files: ac56735b1e461083d9830d8e1c2a9108 2944680 gatb-core_1.4.2+dfsg.orig.tar.xz 03b46fa825617d3622f94b0f4aaebe19 97408 gatb-core_1.4.2+dfsg-9.debian.tar.xz 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gpgv: Signature made Sun Jul 24 15:14:18 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./gatb-core_1.4.2+dfsg-9.dsc dpkg-source: info: extracting gatb-core in /<> dpkg-source: info: unpacking gatb-core_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying avoid_-msse dpkg-source: info: applying use-int-as-return-of-fgetc.patch dpkg-source: info: applying gatbCoreCompileMinia.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-173d66d6-1054-4436-a792-235d4509b4e4 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_autoreconf_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic cd obj-mipsel-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mipsel -DCMAKE_C_COMPILER=mipsel-linux-gnu-gcc -DCMAKE_CXX_COMPILER=mipsel-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mipsel-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mipsel-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/mipsel-linux-gnu -DCMAKE_CXX_STANDARD_LIBRARIES=-latomic ../gatb-core -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/mipsel-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mipsel-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - failed -- Options: -std=c++11 -Wno-invalid-offsetof -- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.7") -- HDF5_LIBRARIES="/usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:199 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- HDF5 C compiler wrapper is unable to compile a minimal HDF5 program. -- Found HDF5: /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so (found version "1.10.7") found components: C CMake Warning (dev) at CMakeLists.txt:225 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:226 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:227 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:228 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.4") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-mipsel-linux-gnu make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -a cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-mipsel-linux-gnu' /usr/bin/cmake -S/<>/gatb-core -B/<>/obj-mipsel-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-mipsel-linux-gnu/CMakeFiles /<>/obj-mipsel-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 21%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘long long int’ [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | long long int | long int | %lld [ 23%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 34%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 43%] Linking CXX static library ../lib/None/libgatbcore.a cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o" 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"CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" /usr/bin/mipsel-linux-gnu-ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 43%] Built target gatbcore-static make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/Bank.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core/src/gatb/bcalm2/logging.cpp: In function ‘long unsigned int gatb::core::debruijn::impl::logging(std::string)’: /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:67: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/bcalm2/logging.cpp:31:73: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 31 | snprintf (tmp, sizeof(tmp), " memory [current, maxRSS]: [%4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 32 | mem, memMaxProcess); | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core/src/gatb/bcalm2/ograph.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 51%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u [ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/Model.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp: In member function ‘void gatb::core::kmer::impl::Repartitor::printInfo()’: /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:307:41: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 307 | printf("Repartitor : nbMinimizers=%ld\n", _nb_minims); | ~~^ ~~~~~~~~~~ | | | | | u_int64_t {aka long long unsigned int} | long int | %lld /<>/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp:308:71: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 308 | for (u_int64_t ii=0; ii<_nb_minims; ii++ ) { printf(" table[%ld] = %d \n",ii,_repart_table[ii]); } | ~~^ ~~ | | | | long int u_int64_t {aka long long unsigned int} | %lld [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 59%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core/src/gatb/system/impl/System.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 63%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 63%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/api/Data.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::ProgressTimerAndSystem::fillBuffer(double)’: /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:62: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:68: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/src/gatb/tools/misc/impl/Progress.cpp:350:74: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 350 | snprintf (tmp, sizeof(tmp), " cpu: %5.1f %% mem: [%4lu, %4lu, %4lu] MB ", | ~~~^ | | | long unsigned int | %4llu 351 | _cpuinfo->getUsage(), 352 | mem, _memMax, memMaxProcess | ~~~~~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function ‘virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)’: /<>/gatb-core/src/gatb/tools/misc/impl/Property.cpp:438:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘long long int’ [-Wformat=] 438 | snprintf (buffer, sizeof(buffer), "%ld", value); | ~~^ ~~~~~ | | | | | long long int | long int | %lld [ 67%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 128; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 32; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 64; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long long unsigned int]’: /<>/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:812:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::string, int, int, int, bool, bool) [with unsigned int SPAN = 96; std::string = std::__cxx11::basic_string]’ /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:30:9: required from here /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:49: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~~~^ | | | long unsigned int | %12u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, | ~~~~~~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:842:87: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘std::unordered_map, std::equal_to, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 842 | printf("final hash %12lu bits (%.2f %%) (nb in final hash %lu)\n", | ~~^ | | | long unsigned int | %u 843 | _final_hash.size()*42*8, 100*(float)(_final_hash.size()*42*8)/totalsize, 844 | _final_hash.size() ); | ~~~~~~~~~~~~~~~~~~ | | | std::unordered_map, std::equal_to, std::allocator > >::size_type {aka unsigned int} [ 72%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u In file included from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >; Edge = gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >; Graph = gatb::core::debruijn::impl::GraphTemplate, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > >, gatb::core::debruijn::impl::Edge_t, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, boost::variant, gatb::core::debruijn::impl::GraphData<32>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<64>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<96>, boost::mpl::l_item, gatb::core::debruijn::impl::GraphData<128>, boost::mpl::l_end> > > > > > >]’: /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:852:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > >, std::less, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > >, std::allocator, mpl_::int_<64>, mpl_::int_<96>, mpl_::int_<128> > > > > > >::size_type {aka unsigned int} | %u /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In instantiation of ‘bool gatb::core::debruijn::impl::MonumentTraversalTemplate::validate_consensuses(std::set >&, gatb::core::debruijn::impl::Path_t&) [with Node = gatb::core::debruijn::impl::Node_t >; Edge = gatb::core::debruijn::impl::Edge_t > >; Graph = gatb::core::debruijn::impl::GraphTemplate >, gatb::core::debruijn::impl::Edge_t > >, boost::variant > >]’: /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:18:16: required from here /<>/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:714:26: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::set > >, std::less > > >, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wformat=] 714 | if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | long unsigned int std::set > >, std::less > > >, std::allocator > > > >::size_type {aka unsigned int} | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 82%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 86%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 86%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/obj-mipsel-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 86%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 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"CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" -latomic cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 86%] Built target gatbcore-dynamic make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core /<>/gatb-core/test/unit /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/test/unit /<>/obj-mipsel-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 86%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestBank.cpp /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample1_aux(const string&, gatb::core::bank::impl::BankFasta::Iterator::CommentMode_e)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:118:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 118 | snprintf (buffer, sizeof(buffer), "seq%ld%s", i+1, (mode == BankFasta::Iterator::FULL ? " generic" : "")); | ~~^ ~~~ | | | | | size_t {aka unsigned int} | long int | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_checkSample2_aux(const string&)’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:187:53: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 187 | snprintf (buffer, sizeof(buffer), "seq%ld", nbSeq+1); | ~~^ ~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/gatb-core/test/unit/src/bank/TestBank.cpp: In member function ‘void gatb::tests::TestBank::bank_perf1()’: /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘u_int64_t’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~~~~~ | | | u_int64_t {aka long long unsigned int} /<>/gatb-core/test/unit/src/bank/TestBank.cpp:678:35: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘gatb::core::system::ITime::Value’ {aka ‘long long unsigned int’} [-Wformat=] 678 | printf ("size=%ld time=%ld => rate=%.3f MB/s \n", | ~~^ | | | long int | %lld 679 | totalSize, t1-t0, | ~~~~~ | | | gatb::core::system::ITime::Value {aka long long unsigned int} [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o -c /<>/gatb-core/test/unit/src/bank/TestSequence.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 89%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDSK.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 91%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core/test/unit/src/main.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core/test/unit/src/system/TestSystem.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestIterable.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp In file included from /<>/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33, from /<>/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core/thirdparty/BooPHF/BooPHF.h:546:53: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wformat=] 546 | printf("rank array : size %lu \n",_ranks.size()); | ~~^ ~~~~~~~~~~~~~ | | | | | std::vector::size_type {aka unsigned int} | long unsigned int | %u [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /<>/gatb-core/test/unit/src/tools/misc/TestMisc.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/mipsel-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/obj-mipsel-linux-gnu/include -I/<>/obj-mipsel-linux-gnu/include/None -I/<>/gatb-core/src -I/<>/gatb-core/thirdparty -I/<>/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /<>/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [ 96%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /<>/obj-mipsel-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o" "CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o" -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/mipsel-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/mipsel-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/mipsel-linux-gnu/libcppunit.so -latomic /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o: in function `gatb::tests::TestSystem::thread_checkTime_mainloop(void*)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/test/unit/src/system/TestSystem.cpp:603: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt8 const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Leon.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<128u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_128.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_64.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:375: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_96.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:377: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel<__gnu_cxx::__normal_iterator > > >(std::vector >&, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, std::shared_ptr<__gnu_cxx::__normal_iterator > > >, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization10.cpp.in_32.cpp.o): in function `void boomphf::mphf >::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch >::insert(gatb::core::tools::math::LargeInt<1> const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<32u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch >::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o:./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: more undefined references to `__sync_add_and_fetch_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector >&, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o: in function `void boomphf::mphf, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel(std::vector >&, std::shared_ptr, std::shared_ptr, int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::BagHDF5Patch::insert(gatb::core::tools::math::NativeInt64 const*, unsigned int)': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o: in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/test/unit/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<64u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<96u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::BagHDF5Patch::Count>::insert(gatb::core::kmer::impl::Kmer<128u>::Count const*, unsigned int)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:298: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::Count>::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Graph.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: more undefined references to `__sync_add_and_fetch_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::kmer::impl::ReadSuperKCommand<32u>::execute()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1047: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:1102: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o): in function `gatb::core::tools::misc::impl::MemAllocator::pool_malloc(unsigned long long, char const*)': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization2.cpp.in_32.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/misc/impl/Pool.hpp:373: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_128.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_64.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>(std::vector, std::allocator > >&, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, std::shared_ptr, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::iterator_adaptator>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:883: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:895: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `boomphf::bitVector::atomic_test_and_set(unsigned long long)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:563: undefined reference to `__sync_fetch_and_or_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(TemplateSpecialization4.cpp.in_96.cpp.o): in function `void boomphf::mphf, gatb::core::tools::collections::impl::BooPHF, gatb::core::tools::collections::impl::AdaptatorDefault >, gatb::core::tools::misc::impl::ProgressNone>::hasher_t>::pthread_processLevel const*>(std::vector, std::allocator > >&, std::shared_ptr const*>, std::shared_ptr const*>, int)': ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:898: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/thirdparty/BooPHF/BooPHF.h:886: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(DnaCoder.cpp.o): in function `DnaEncoder::~DnaEncoder()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:238: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: undefined reference to `__sync_fetch_and_add_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(DnaCoder.cpp.o):./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/compression/DnaCoder.cpp:239: more undefined references to `__sync_fetch_and_add_8' follow /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ../../lib/None/libgatbcore.a(Histogram.cpp.o): in function `gatb::core::tools::storage::impl::CollectionDataHDF5Patch::checkCleanup()': ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' /usr/lib/gcc-cross/mipsel-linux-gnu/11/../../../../mipsel-linux-gnu/bin/ld: ./obj-mipsel-linux-gnu/src/./gatb-core/src/gatb/tools/storage/impl/CollectionHDF5Patch.hpp:235: undefined reference to `__sync_add_and_fetch_8' collect2: error: ld returned 1 exit status make[4]: *** [test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make:471: bin/None/gatb-core-cppunit] Error 1 make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:353: test/unit/CMakeFiles/gatb-core-cppunit.dir/all] Error 2 make[3]: Leaving directory '/<>/obj-mipsel-linux-gnu' make[2]: *** [Makefile:159: all] Error 2 make[2]: Leaving directory '/<>/obj-mipsel-linux-gnu' dh_auto_build: error: cd obj-mipsel-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:21: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:15: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-07-27T16:05:36Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1457392 Build-Time: 1840 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 22 Job: gatb-core_1.4.2+dfsg-9 Machine Architecture: amd64 Package: gatb-core Package-Time: 1876 Source-Version: 1.4.2+dfsg-9 Space: 1457392 Status: attempted Version: 1.4.2+dfsg-9 -------------------------------------------------------------------------------- Finished at 2022-07-27T16:05:36Z Build needed 00:31:16, 1457392k disk space