sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +=====================================================================================+ | genometester 4.0+git20200511.91cecb5+dfsg-1 (amd64) Sat, 27 Apr 2024 01:34:05 +0000 | +=====================================================================================+ Package: genometester Version: 4.0+git20200511.91cecb5+dfsg-1 Source Version: 4.0+git20200511.91cecb5+dfsg-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.LvESNeP8Yr... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/genometester-2QSmFB/resolver-cS9jXa' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.6 MB] Get:3 http://mirror.einval.org/debian unstable/main amd64 Packages [9873 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9754 kB] Fetched 30.4 MB in 8s (3942 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils libapt-pkg6.0t64 libblkid1 libmount1 libsmartcols1 libsystemd0 libudev1 libuuid1 linux-libc-dev util-linux 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6718 kB of archives. After this operation, 50.2 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 bsdutils arm64 1:2.40-7 [100 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libsmartcols1 arm64 2.40-7 [131 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libuuid1 arm64 2.40-7 [32.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libblkid1 arm64 2.40-7 [158 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmount1 arm64 2.40-7 [186 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 util-linux arm64 2.40-7 [1173 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 255.5-1 [338 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 255.5-1 [119 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg6.0t64 arm64 2.9.2 [881 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 apt arm64 2.9.2 [1319 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.7.12-1 [2281 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6718 kB in 0s (38.0 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.37-18) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'genometester' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/genometester.git Please use: git clone https://salsa.debian.org/med-team/genometester.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 323 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main genometester 4.0+git20200511.91cecb5+dfsg-1 (dsc) [2224 B] Get:2 http://mirror.einval.org/debian unstable/main genometester 4.0+git20200511.91cecb5+dfsg-1 (tar) [87.9 kB] Get:3 http://mirror.einval.org/debian unstable/main genometester 4.0+git20200511.91cecb5+dfsg-1 (diff) [233 kB] Fetched 323 kB in 0s (4734 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/genometester-2QSmFB/genometester-4.0+git20200511.91cecb5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/genometester-2QSmFB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [714 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2080 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 97.1 MB of archives. After this operation, 404 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7 [14.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40-7 [93.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [9273 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-7 [4732 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.42-4 [2376 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14-20240127-1cross1 [71.7 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14-20240127-1cross1 [128 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14-20240127-1cross1 [25.2 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14-20240127-1cross1 [8996 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14-20240127-1cross1 [2716 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14-20240127-1cross1 [1199 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14-20240127-1cross1 [2444 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-12cross1 [1478 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14-20240127-1cross1 [667 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14-20240127-1cross1 [1070 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14-20240127-1cross1 [1434 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14-20240127-1cross1 [146 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-12cross1 [2536 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-7 [1452 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-12cross1 [1898 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-12cross1 [2210 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:44 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-7 [1204 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.34-1 [28.4 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.34-1 [73.5 kB] Get:76 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-23 [44.6 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-18 [2757 kB] Get:80 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14-20240330-1 [2724 kB] Get:81 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14-20240330-1 [9216 B] Get:82 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:83 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:84 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-18 [1906 kB] Get:85 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:86 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14-20240330-1 [25.8 kB] Get:87 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14-20240330-1 [1201 kB] Get:88 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14-20240330-1 [2454 kB] Get:89 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:90 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14-20240330-1 [1071 kB] Get:91 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14-20240330-1 [1485 kB] Get:92 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:93 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-23 [2537 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-23 [2264 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.1 MB in 1s (70.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11925 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Unpacking gcc-14-cross-base (14-20240127-1cross1) ... Selecting previously unselected package libgcc-s1-amd64-cross. Preparing to unpack .../24-libgcc-s1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgcc-s1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libgomp1-amd64-cross. Preparing to unpack .../25-libgomp1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgomp1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libitm1-amd64-cross. Preparing to unpack .../26-libitm1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libitm1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libatomic1-amd64-cross. Preparing to unpack .../27-libatomic1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libatomic1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libasan8-amd64-cross. Preparing to unpack .../28-libasan8-amd64-cross_14-20240127-1cross1_all.deb ... 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Setting up libmagic-mgc (1:5.45-3) ... Setting up gcc-14-base:amd64 (14-20240330-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14-20240127-1cross1) ... Setting up file (1:5.45-3) ... Setting up libyaml-perl (1.31-1) ... Setting up libgomp1-amd64-cross (14-20240127-1cross1) ... Setting up libfakeroot:arm64 (1.34-1) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libitm1-amd64-cross (14-20240127-1cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:amd64 (13.2.0-23) ... Setting up libatomic1-amd64-cross (14-20240127-1cross1) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up libquadmath0-amd64-cross (14-20240127-1cross1) ... Setting up autopoint (0.21-14) ... Setting up libc6-amd64-cross (2.37-12cross1) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-x86-64-linux-gnu-base:arm64 (13.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libgcc-s1-amd64-cross (14-20240127-1cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up binutils-x86-64-linux-gnu (2.42-4) ... Setting up libstdc++6-amd64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up libasan8-amd64-cross (14-20240127-1cross1) ... Setting up liblsan0-amd64-cross (14-20240127-1cross1) ... Setting up libc6-dev-amd64-cross (2.37-12cross1) ... Setting up libtsan2-amd64-cross (14-20240127-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libhwasan0-amd64-cross (14-20240127-1cross1) ... Setting up libubsan1-amd64-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (14-20240330-1) ... Setting up libc6:amd64 (2.37-18) ... Setting up libhwasan0:amd64 (14-20240330-1) ... Setting up libasan8:amd64 (14-20240330-1) ... Setting up libtsan2:amd64 (14-20240330-1) ... Setting up libstdc++6:amd64 (14-20240330-1) ... Setting up liblsan0:amd64 (14-20240330-1) ... Setting up libitm1:amd64 (14-20240330-1) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... Setting up libgomp1:amd64 (14-20240330-1) ... Setting up libquadmath0:amd64 (14-20240330-1) ... Setting up libatomic1:amd64 (14-20240330-1) ... Setting up libubsan1:amd64 (14-20240330-1) ... Setting up libgcc-13-dev:amd64 (13.2.0-23) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libc6-dev:amd64 (2.37-18) ... Setting up libstdc++-13-dev:amd64 (13.2.0-23) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-18) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-18 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-amd64-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-amd64-cross_14-20240127-1cross1 linux-libc-dev_6.7.12-1 Package versions: apt_2.9.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-aarch64-linux-gnu_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40-7 bsdutils_1:2.40-7 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-23 cpp-13-aarch64-linux-gnu_13.2.0-23 cpp-13-x86-64-linux-gnu_13.2.0-12cross1 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-amd64_12.10 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-23 g++-13-aarch64-linux-gnu_13.2.0-23 g++-13-x86-64-linux-gnu_13.2.0-12cross1 g++-aarch64-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-23 gcc-13-aarch64-linux-gnu_13.2.0-23 gcc-13-base_13.2.0-23 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-12cross1 gcc-13-x86-64-linux-gnu-base_13.2.0-12cross1 gcc-14-base_14-20240330-1 gcc-14-cross-base_14-20240127-1cross1 gcc-aarch64-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.9.2 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libasan8-amd64-cross_14-20240127-1cross1 libatomic1_14-20240330-1 libatomic1-amd64-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-18 libc-dev-bin_2.37-18 libc6_2.37-18 libc6-amd64-cross_2.37-12cross1 libc6-dev_2.37-18 libc6-dev-amd64-cross_2.37-12cross1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14-20240330-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-23 libgcc-13-dev-amd64-cross_13.2.0-12cross1 libgcc-s1_14-20240330-1 libgcc-s1-amd64-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-2 libgomp1_14-20240330-1 libgomp1-amd64-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14-20240330-1 libhwasan0-amd64-cross_14-20240127-1cross1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240330-1 libitm1-amd64-cross_14-20240127-1cross1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: genometester Binary: genometester Architecture: any Version: 4.0+git20200511.91cecb5+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Andreas Tille Homepage: https://github.com/bioinfo-ut/GenomeTester4 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/genometester Vcs-Git: https://salsa.debian.org/med-team/genometester.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: genometester deb science optional arch=any Checksums-Sha1: 9bb2833f18dd955907cb4eb34c60f5a161714b12 87872 genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz f06ad509d6ccab4724444478241842469a855ce8 232860 genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz 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+/B0ySZAylKGBKSM4BkiwvYa/1458BJv/L1rrtU2YGGIBfAkYtxfbCNitNRomtAQ WXAOke8+0UKPSwNe18XR9Y2uiOyfryVco6clMPQfFiYAdVdCnkNMED+r1PZ4eOZ1 R7QKpeIo3Kk1QCd3iWN7mkDO63aQY9FqA/WYzCQvWOXaf6XgQ0RL9yWMDot22iGE FzLwRzdK7WPw8pDYToUSeB3a4iGSVpKIHE0cwafcfrmvZwKUvE5F6Q3DdMmlezNE EIsnV1+zI6nN0/SMC1K1vt8gadHMjJtLlI7uL37c/T4q/r8zuT53U5DWimJsjwUt 4lvNRgibXH45jw== =eWXy -----END PGP SIGNATURE----- gpgv: Signature made Sun May 17 18:12:20 2020 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./genometester_4.0+git20200511.91cecb5+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting genometester in /<> dpkg-source: info: unpacking genometester_4.0+git20200511.91cecb5+dfsg.orig.tar.xz dpkg-source: info: unpacking genometester_4.0+git20200511.91cecb5+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_debug_symbols.patch dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package genometester dpkg-buildpackage: info: source version 4.0+git20200511.91cecb5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean cd src && make -j1 clean make[2]: Entering directory '/<>/src' rm -f *.o glistmaker glistquery glistcompare make[2]: Leaving directory '/<>/src' rm -f src/gdistribution src/gmer_caller src/gmer_counter make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[2]: Entering directory '/<>/src' x86_64-linux-gnu-g++ glistmaker.c common.c common.h fasta.c fasta.h wordtable.c wordtable.h wordmap.c wordmap.h buffer.c buffer.h sequence.c sequence.h sequence-file.c sequence-file.h queue.c queue.h utils.c utils.h -o glistmaker -lm -lpthread -lrt -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I. -O3 -g -Wall -Wl,-z,relro -Wl,-z,now glistmaker.c: In function ‘int main(int, const char**)’: glistmaker.c:183:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | if (nthreads > ((3 * nfasta + 1) >> 1)) nthreads = (3 * nfasta + 1) >> 1; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ glistmaker.c: In function ‘void process(Queue*, unsigned int, void*)’: glistmaker.c:479:119: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 479 | } else if (mq->files && (mq->ntasks[TASK_READ] < MAX_FILES) && (mq->navailable || (mq->ntablescreated < ntables))) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ glistmaker.c:380:58: warning: ‘t’ may be used uninitialized [-Wmaybe-uninitialized] 380 | wordtable_build_filename (t[0], c, 1024, outputname); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ glistmaker.c:373:44: note: ‘t’ declared here 373 | wordtable *t[MAX_MERGED_TABLES]; | ^ wordtable.c: In function ‘wordtable* wordtable_new(unsigned int, long long unsigned int)’: wordtable.c:48:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 48 | char *c = "AA"; | ^~~~ utils.c: In function ‘const unsigned char* gt4_mmap(const char*, long long unsigned int*)’: utils.c:50:21: error: invalid conversion from ‘void*’ to ‘const unsigned char*’ [-fpermissive] 50 | data = mmap (NULL, st.st_size, PROT_READ, MAP_PRIVATE, handle, 0); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | void* utils.c: In function ‘void hybridInPlaceRadixSort256(long long unsigned int*, long long unsigned int*, unsigned int*, unsigned int)’: utils.c:125:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘long int’ [-Wsign-compare] 125 | for (i = 0; i < end - begin; ) { | ~~^~~~~~~~~~~~~ make[2]: *** [Makefile:138: glistmaker] Error 1 make[2]: Leaving directory '/<>/src' dh_auto_build: error: cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc returned exit code 2 make[1]: *** [debian/rules:15: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-04-27T01:36:04Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 4320 Build-Time: 22 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 49 Job: genometester_4.0+git20200511.91cecb5+dfsg-1 Machine Architecture: arm64 Package: genometester Package-Time: 119 Source-Version: 4.0+git20200511.91cecb5+dfsg-1 Space: 4320 Status: attempted Version: 4.0+git20200511.91cecb5+dfsg-1 -------------------------------------------------------------------------------- Finished at 2024-04-27T01:36:04Z Build needed 00:01:59, 4320k disk space