sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | gmap 2024-11-20+ds-1 (amd64) Tue, 31 Dec 2024 05:37:33 +0000 | +==============================================================================+ Package: gmap Version: 2024-11-20+ds-1 Source Version: 2024-11-20+ds-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.z62A3L4CqD... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/gmap-bN7gXO/resolver-tv9iX0' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [205 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.9 MB] Get:3 http://mirror.einval.org/debian unstable/main amd64 Packages [9996 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9913 kB] Fetched 31.0 MB in 7s (4349 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-passwd binutils binutils-aarch64-linux-gnu binutils-common cpp-14 cpp-14-aarch64-linux-gnu g++-14 g++-14-aarch64-linux-gnu gcc-14 gcc-14-aarch64-linux-gnu gcc-14-base init-system-helpers libasan8 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0 libgcc-14-dev libgcc-s1 libgomp1 libgprofng0 libhwasan0 libitm1 liblsan0 libsframe1 libstdc++-14-dev libstdc++6 libtsan2 libubsan1 libzstd1 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 59.2 MB of archives. After this operation, 65.5 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 base-passwd arm64 3.6.6 [52.9 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 init-system-helpers all 1.68 [38.7 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 14.2.0-12 [42.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 14.2.0-12 [124 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 14.2.0-12 [24.1 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 14.2.0-12 [10.1 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 14.2.0-12 [2577 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 14.2.0-12 [1161 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 14.2.0-12 [2386 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 14.2.0-12 [1039 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 14.2.0-12 [1442 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 gcc-14-base arm64 14.2.0-12 [48.3 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 14.2.0-12 [637 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 gcc-14 arm64 14.2.0-12 [524 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 g++-14 arm64 14.2.0-12 [20.5 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-12 [10.1 MB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-12 [2312 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-12 [2367 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-12 [17.7 MB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-12 [9165 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-14 arm64 14.2.0-12 [1276 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-12 [54.1 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.43.50.20241230-1 [669 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.43.50.20241230-1 [84.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.43.50.20241230-1 [151 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libsframe1 arm64 2.43.50.20241230-1 [77.1 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libzstd1 arm64 1.5.6+dfsg-2 [261 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.43.50.20241230-1 [659 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.43.50.20241230-1 [2628 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.43.50.20241230-1 [68.3 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.43.50.20241230-1 [2807 kB] Preconfiguring packages ... Fetched 59.2 MB in 1s (97.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11954 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.6_arm64.deb ... Unpacking base-passwd (3.6.6) over (3.6.5) ... Setting up base-passwd (3.6.6) ... (Reading database ... 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Setting up libgprofng0:arm64 (2.43.50.20241230-1) ... Setting up cpp-14 (14.2.0-12) ... Setting up libgcc-14-dev:arm64 (14.2.0-12) ... Setting up libstdc++-14-dev:arm64 (14.2.0-12) ... Setting up binutils-aarch64-linux-gnu (2.43.50.20241230-1) ... Setting up binutils (2.43.50.20241230-1) ... Setting up gcc-14-aarch64-linux-gnu (14.2.0-12) ... Setting up g++-14-aarch64-linux-gnu (14.2.0-12) ... Setting up gcc-14 (14.2.0-12) ... Setting up g++-14 (14.2.0-12) ... Processing triggers for libc-bin (2.40-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'gmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gmap.git Please use: git clone https://salsa.debian.org/med-team/gmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2594 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main gmap 2024-11-20+ds-1 (dsc) [2309 B] Get:2 http://mirror.einval.org/debian unstable/main gmap 2024-11-20+ds-1 (tar) [2579 kB] Get:3 http://mirror.einval.org/debian unstable/main gmap 2024-11-20+ds-1 (diff) [13.6 kB] Fetched 2594 kB in 0s (29.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/gmap-bN7gXO/gmap-2024-11-20+ds' with '<>' I: NOTICE: Log filtering will replace 'build/gmap-bN7gXO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-little-endian, help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), architecture-is-little-endian, help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [804 B] Get:5 copy:/<>/apt_archive ./ Packages [847 B] Fetched 2260 B in 0s (87.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: architecture-properties:amd64 autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbz2-1.0:amd64 libbz2-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsimde-dev libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libxml2 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libstdc++-14-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:amd64 libidn2-0:amd64 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties:amd64 autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbz2-1.0:amd64 libbz2-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsimde-dev libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libxml2 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After this operation, 450 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-3 [198 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-13 [91.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:13 http://mirror.einval.org/debian unstable/main amd64 architecture-properties amd64 0.2.3 [2184 B] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-3 [723 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu-base arm64 14.2.0-6cross1 [46.9 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [10.4 MB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:14.2.0-1 [4852 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.43.50.20241230-1 [2484 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14.2.0-6cross1 [72.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14.2.0-6cross1 [129 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14.2.0-6cross1 [25.3 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14.2.0-6cross1 [8984 B] Get:28 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14.2.0-6cross1 [2718 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14.2.0-6cross1 [1204 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14.2.0-6cross1 [2449 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.40-3cross1 [1532 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14.2.0-6cross1 [665 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14.2.0-6cross1 [1074 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14.2.0-6cross1 [1485 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14.2.0-6cross1 [145 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-amd64-cross all 14.2.0-6cross1 [2669 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [20.0 MB] Get:38 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:14.2.0-1 [1448 B] Get:39 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.11.2-1cross1 [2266 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.40-3cross1 [1949 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-amd64-cross all 14.2.0-6cross1 [2347 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 g++-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [11.3 MB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:14.2.0-1 [1204 B] Get:44 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:51 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-3 [1532 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.23 [919 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.36.2-1 [29.5 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.36.2-1 [74.7 kB] Get:62 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14.2.0-12 [48.3 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:64 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-12 [72.7 kB] Get:65 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.40-4 [2804 kB] Get:66 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14.2.0-12 [2727 kB] Get:67 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14.2.0-12 [9300 B] Get:68 http://mirror.einval.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:69 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB] Get:70 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:71 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:72 http://mirror.einval.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:73 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14.2.0-12 [137 kB] Get:74 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14.2.0-12 [25.9 kB] Get:75 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14.2.0-12 [1205 kB] Get:76 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14.2.0-12 [2460 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14.2.0-12 [714 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14.2.0-12 [1075 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14.2.0-12 [1489 kB] Get:80 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14.2.0-12 [145 kB] Get:81 http://mirror.einval.org/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-12 [2673 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get:83 http://mirror.einval.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-12 [2372 kB] Get:84 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:85 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Preconfiguring packages ... Fetched 107 MB in 1s (93.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11953 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-3_arm64.deb ... Unpacking gettext-base (0.22.5-3) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-13_arm64.deb ... Unpacking bsdextrautils (2.40.2-13) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package architecture-properties:amd64. 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Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../48-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../49-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../50-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../51-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../52-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../53-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... 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Setting up libstdc++6-amd64-cross (14.2.0-6cross1) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up libasan8-amd64-cross (14.2.0-6cross1) ... Setting up liblsan0-amd64-cross (14.2.0-6cross1) ... Setting up libc6-dev-amd64-cross (2.40-3cross1) ... Setting up libtsan2-amd64-cross (14.2.0-6cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up libhwasan0-amd64-cross (14.2.0-6cross1) ... Setting up libubsan1-amd64-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgcc-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up groff-base (1.23.0-7) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up libstdc++-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up g++-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up debhelper (13.23) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libgcc-s1:amd64 (14.2.0-12) ... Setting up libc6:amd64 (2.40-4) ... Setting up libhwasan0:amd64 (14.2.0-12) ... Setting up libasan8:amd64 (14.2.0-12) ... Setting up libtsan2:amd64 (14.2.0-12) ... Setting up libbz2-1.0:amd64 (1.0.8-6) ... Setting up libstdc++6:amd64 (14.2.0-12) ... Setting up liblsan0:amd64 (14.2.0-12) ... Setting up libitm1:amd64 (14.2.0-12) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:amd64 (1:4.4.36-5) ... Setting up libgomp1:amd64 (14.2.0-12) ... Setting up libquadmath0:amd64 (14.2.0-12) ... Setting up libatomic1:amd64 (14.2.0-12) ... Setting up libubsan1:amd64 (14.2.0-12) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libgcc-14-dev:amd64 (14.2.0-12) ... Setting up libstdc++-14-dev:amd64 (14.2.0-12) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (13.6) ... Processing triggers for libc-bin (2.40-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) arm64 (aarch64) Toolchain package versions: binutils_2.43.50.20241230-1 dpkg-dev_1.22.11 g++-14_14.2.0-12 gcc-14_14.2.0-12 libc6-dev_2.40-4 libstdc++-14-dev_14.2.0-12 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-12 libstdc++6-amd64-cross_14.2.0-6cross1 linux-libc-dev_6.12.6-1 Package versions: apt_2.9.20 architecture-properties_0.2.3 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-3 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.43.50.20241230-1 binutils-aarch64-linux-gnu_2.43.50.20241230-1 binutils-common_2.43.50.20241230-1 binutils-x86-64-linux-gnu_2.43.50.20241230-1 bsdextrautils_2.40.2-13 bsdutils_1:2.40.2-13 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-12 cpp-14-aarch64-linux-gnu_14.2.0-12 cpp-14-x86-64-linux-gnu_14.2.0-6cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-amd64_12.12 dash_0.5.12-9+b1 debconf_1.5.89 debhelper_13.23 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36.2-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-12 g++-14-aarch64-linux-gnu_14.2.0-12 g++-14-x86-64-linux-gnu_14.2.0-6cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-12 gcc-14-aarch64-linux-gnu_14.2.0-12 gcc-14-base_14.2.0-12 gcc-14-cross-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-6cross1 gcc-14-x86-64-linux-gnu-base_14.2.0-6cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-3 gettext-base_0.22.5-3 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.12-1.2 help2man_1.49.3+b1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.20 libarchive-zip-perl_1.68-1 libasan8_14.2.0-12 libasan8-amd64-cross_14.2.0-6cross1 libatomic1_14.2.0-12 libatomic1-amd64-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libbinutils_2.43.50.20241230-1 libblkid1_2.40.2-13 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-4 libc-dev-bin_2.40-4 libc6_2.40-4 libc6-amd64-cross_2.40-3cross1 libc6-dev_2.40-4 libc6-dev-amd64-cross_2.40-3cross1 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-12 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.50.20241230-1 libctf0_2.43.50.20241230-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.276 libdebhelper-perl_13.23 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libfakeroot_1.36.2-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-12 libgcc-14-dev-amd64-cross_14.2.0-6cross1 libgcc-s1_14.2.0-12 libgcc-s1-amd64-cross_14.2.0-6cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-12 libgomp1-amd64-cross_14.2.0-6cross1 libgprofng0_2.43.50.20241230-1 libhogweed6t64_3.10-1+b1 libhwasan0_14.2.0-12 libhwasan0-amd64-cross_14.2.0-6cross1 libicu72_72.1-5+b1 libisl23_0.27-1 libitm1_14.2.0-12 libitm1-amd64-cross_14.2.0-6cross1 libjansson4_2.14-2+b3 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-12 liblsan0-amd64-cross_14.2.0-6cross1 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.2-13 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libnettle8t64_3.10-1+b1 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpcre2-8-0_10.44-5 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libquadmath0_14.2.0-12 libquadmath0-amd64-cross_14.2.0-6cross1 libseccomp2_2.5.5-2 libselinux1_3.7-3+b1 libsframe1_2.43.50.20241230-1 libsimde-dev_0.8.2-2 libsmartcols1_2.40.2-13 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-12 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-12 libstdc++6-amd64-cross_14.2.0-6cross1 libsystemd0_257.1-5 libtinfo6_6.5-2+b1 libtool_2.4.7-8 libtsan2_14.2.0-12 libtsan2-amd64-cross_14.2.0-6cross1 libubsan1_14.2.0-12 libubsan1-amd64-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b2 libudev1_257.1-5 libunistring5_1.3-1 libuuid1_2.40.2-13 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxxhash0_0.8.2-2+b2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.6-1 linux-libc-dev-amd64-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-13 login.defs_1:4.16.0-7 m4_1.4.19-4 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.3.2-2 patch_2.7.6-7+b1 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 sqv_1.2.1-5 sysvinit-utils_3.11-1 tar_1.35+dfsg-3.1 util-linux_2.40.2-13 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gmap Binary: gmap Architecture: any Version: 2024-11-20+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Shaun Jackman , Andreas Tille , Alexandre Mestiashvili , Étienne Mollier Homepage: http://research-pub.gene.com/gmap Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/gmap Vcs-Git: https://salsa.debian.org/med-team/gmap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-little-endian, help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev Package-List: gmap deb science optional arch=any Checksums-Sha1: 62abf6c57d47832f38718b9aaf5187e159257084 2578616 gmap_2024-11-20+ds.orig.tar.xz 6c30ee2753fcf3c9195a1829f202b254dbb236d4 13552 gmap_2024-11-20+ds-1.debian.tar.xz Checksums-Sha256: 82d456442f2249c7c0e3a6bf9cfe3a2cc9b9e434bd9705ac6c0a38f7b01011cd 2578616 gmap_2024-11-20+ds.orig.tar.xz ce5079dff2a140f4e31984a21a4454d202cd1181278b1ba28d6b608894b5574a 13552 gmap_2024-11-20+ds-1.debian.tar.xz Files: e39b9b6d94d52610760153750fcdb512 2578616 gmap_2024-11-20+ds.orig.tar.xz 56e6ddb39c6807b98ac26bcb73030dac 13552 gmap_2024-11-20+ds-1.debian.tar.xz Dgit: 8afb95e16e3722c5d42ac7828760eab7116384a9 debian archive/debian/2024-11-20+ds-1 https://git.dgit.debian.org/gmap -----BEGIN PGP SIGNATURE----- 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unpacking gmap_2024-11-20+ds.orig.tar.xz dpkg-source: info: unpacking gmap_2024-11-20+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying install-data-local dpkg-source: info: applying remove_getopt_code_copy.patch dpkg-source: info: applying simd_fixes Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package gmap dpkg-buildpackage: info: source version 2024-11-20+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --builddir build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean --builddir build_avx512 dh_auto_clean --builddir build_avx2 dh_auto_clean --builddir build_sse42 dh_auto_clean --builddir build_sse41 dh_auto_clean --builddir build_ssse3 dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--builddir=build dh_clean -O--builddir=build debian/rules binary-arch dh binary-arch --builddir build dh_update_autotools_config -a -O--builddir=build dh_autoreconf -a -O--builddir=build configure.ac:104: installing 'config/compile' configure.ac:85: installing 'config/config.guess' configure.ac:85: installing 'config/config.sub' configure.ac:109: installing 'config/install-sh' configure.ac:109: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' src/Makefile.am:870: warning: variable 'dist_compare2truth_SOURCES' is defined but no program or src/Makefile.am:870: library has 'compare2truth' as canonical name (possible typo) src/Makefile.am:1216: warning: variable 'dist_gcount_bulk_SOURCES' is defined but no program or src/Makefile.am:1216: library has 'gcount_bulk' as canonical name (possible typo) src/Makefile.am:1242: warning: variable 'dist_gcount_sc_SOURCES' is defined but no program or src/Makefile.am:1242: library has 'gcount_sc' as canonical name (possible typo) src/Makefile.am:216: warning: variable 'dist_gexact_SOURCES' is defined but no program or src/Makefile.am:216: library has 'gexact' as canonical name (possible typo) src/Makefile.am:742: warning: variable 'dist_gexact_arm_SOURCES' is defined but no program or src/Makefile.am:742: library has 'gexact_arm' as canonical name (possible typo) src/Makefile.am:772: warning: variable 'dist_gexact_avx2_SOURCES' is defined but no program or src/Makefile.am:772: library has 'gexact_avx2' as canonical name (possible typo) src/Makefile.am:778: warning: variable 'dist_gexact_avx512_SOURCES' is defined but no program or src/Makefile.am:778: library has 'gexact_avx512' as canonical name (possible typo) src/Makefile.am:784: warning: variable 'dist_gexact_avx512bw_SOURCES' is defined but no program or src/Makefile.am:784: library has 'gexact_avx512bw' as canonical name (possible typo) src/Makefile.am:736: warning: variable 'dist_gexact_nosimd_SOURCES' is defined but no program or src/Makefile.am:736: library has 'gexact_nosimd' as canonical name (possible typo) src/Makefile.am:748: warning: variable 'dist_gexact_sse2_SOURCES' is defined but no program or src/Makefile.am:748: library has 'gexact_sse2' as canonical name (possible typo) src/Makefile.am:760: warning: variable 'dist_gexact_sse41_SOURCES' is defined but no program or src/Makefile.am:760: library has 'gexact_sse41' as canonical name (possible typo) src/Makefile.am:766: warning: variable 'dist_gexact_sse42_SOURCES' is defined but no program or src/Makefile.am:766: library has 'gexact_sse42' as canonical name (possible typo) src/Makefile.am:754: warning: variable 'dist_gexact_ssse3_SOURCES' is defined but no program or src/Makefile.am:754: library has 'gexact_ssse3' as canonical name (possible typo) src/Makefile.am:223: warning: variable 'dist_gfilter_SOURCES' is defined but no program or src/Makefile.am:223: library has 'gfilter' as canonical name (possible typo) src/Makefile.am:816: warning: variable 'dist_gfilter_arm_SOURCES' is defined but no program or src/Makefile.am:816: library has 'gfilter_arm' as canonical name (possible typo) src/Makefile.am:846: warning: variable 'dist_gfilter_avx2_SOURCES' is defined but no program or src/Makefile.am:846: library has 'gfilter_avx2' as canonical name (possible typo) src/Makefile.am:852: warning: variable 'dist_gfilter_avx512_SOURCES' is defined but no program or src/Makefile.am:852: library has 'gfilter_avx512' as canonical name (possible typo) src/Makefile.am:858: warning: variable 'dist_gfilter_avx512bw_SOURCES' is defined but no program or src/Makefile.am:858: library has 'gfilter_avx512bw' as canonical name (possible typo) src/Makefile.am:810: warning: variable 'dist_gfilter_nosimd_SOURCES' is defined but no program or src/Makefile.am:810: library has 'gfilter_nosimd' as canonical name (possible typo) src/Makefile.am:822: warning: variable 'dist_gfilter_sse2_SOURCES' is defined but no program or src/Makefile.am:822: library has 'gfilter_sse2' as canonical name (possible typo) src/Makefile.am:834: warning: variable 'dist_gfilter_sse41_SOURCES' is defined but no program or src/Makefile.am:834: library has 'gfilter_sse41' as canonical name (possible typo) src/Makefile.am:840: warning: variable 'dist_gfilter_sse42_SOURCES' is defined but no program or src/Makefile.am:840: library has 'gfilter_sse42' as canonical name (possible typo) src/Makefile.am:828: warning: variable 'dist_gfilter_ssse3_SOURCES' is defined but no program or src/Makefile.am:828: library has 'gfilter_ssse3' as canonical name (possible typo) src/Makefile.am:1132: warning: variable 'dist_iit_pileup_SOURCES' is defined but no program or src/Makefile.am:1132: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:1154: warning: variable 'dist_sam_sort_SOURCES' is defined but no program or src/Makefile.am:1154: library has 'sam_sort' as canonical name (possible typo) src/Makefile.am:1172: warning: variable 'dist_umi_correct_SOURCES' is defined but no program or src/Makefile.am:1172: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:1191: warning: variable 'dist_velocity_counts_SOURCES' is defined but no program or src/Makefile.am:1191: library has 'velocity_counts' as canonical name (possible typo) src/Makefile.am:869: warning: variable 'compare2truth_LDADD' is defined but no program or src/Makefile.am:869: library has 'compare2truth' as canonical name (possible typo) src/Makefile.am:1215: warning: variable 'gcount_bulk_LDADD' is defined but no program or src/Makefile.am:1215: library has 'gcount_bulk' as canonical name (possible typo) src/Makefile.am:1241: warning: variable 'gcount_sc_LDADD' is defined but no program or src/Makefile.am:1241: library has 'gcount_sc' as canonical name (possible typo) src/Makefile.am:215: warning: variable 'gexact_LDADD' is defined but no program or src/Makefile.am:215: library has 'gexact' as canonical name (possible typo) src/Makefile.am:741: warning: variable 'gexact_arm_LDADD' is defined but no program or src/Makefile.am:741: library has 'gexact_arm' as canonical name (possible typo) src/Makefile.am:771: warning: variable 'gexact_avx2_LDADD' is defined but no program or src/Makefile.am:771: library has 'gexact_avx2' as canonical name (possible typo) src/Makefile.am:777: warning: variable 'gexact_avx512_LDADD' is defined but no program or src/Makefile.am:777: library has 'gexact_avx512' as canonical name (possible typo) src/Makefile.am:783: warning: variable 'gexact_avx512bw_LDADD' is defined but no program or src/Makefile.am:783: library has 'gexact_avx512bw' as canonical name (possible typo) src/Makefile.am:735: warning: variable 'gexact_nosimd_LDADD' is defined but no program or src/Makefile.am:735: library has 'gexact_nosimd' as canonical name (possible typo) src/Makefile.am:747: warning: variable 'gexact_sse2_LDADD' is defined but no program or src/Makefile.am:747: library has 'gexact_sse2' as canonical name (possible typo) src/Makefile.am:759: warning: variable 'gexact_sse41_LDADD' is defined but no program or src/Makefile.am:759: library has 'gexact_sse41' as canonical name (possible typo) src/Makefile.am:765: warning: variable 'gexact_sse42_LDADD' is defined but no program or src/Makefile.am:765: library has 'gexact_sse42' as canonical name (possible typo) src/Makefile.am:753: warning: variable 'gexact_ssse3_LDADD' is defined but no program or src/Makefile.am:753: library has 'gexact_ssse3' as canonical name (possible typo) src/Makefile.am:222: warning: variable 'gfilter_LDADD' is defined but no program or src/Makefile.am:222: library has 'gfilter' as canonical name (possible typo) src/Makefile.am:815: warning: variable 'gfilter_arm_LDADD' is defined but no program or src/Makefile.am:815: library has 'gfilter_arm' as canonical name (possible typo) src/Makefile.am:845: warning: variable 'gfilter_avx2_LDADD' is defined but no program or src/Makefile.am:845: library has 'gfilter_avx2' as canonical name (possible typo) src/Makefile.am:851: warning: variable 'gfilter_avx512_LDADD' is defined but no program or src/Makefile.am:851: library has 'gfilter_avx512' as canonical name (possible typo) src/Makefile.am:857: warning: variable 'gfilter_avx512bw_LDADD' is defined but no program or src/Makefile.am:857: library has 'gfilter_avx512bw' as canonical name (possible typo) src/Makefile.am:809: warning: variable 'gfilter_nosimd_LDADD' is defined but no program or src/Makefile.am:809: library has 'gfilter_nosimd' as canonical name (possible typo) src/Makefile.am:821: warning: variable 'gfilter_sse2_LDADD' is defined but no program or src/Makefile.am:821: library has 'gfilter_sse2' as canonical name (possible typo) src/Makefile.am:833: warning: variable 'gfilter_sse41_LDADD' is defined but no program or src/Makefile.am:833: library has 'gfilter_sse41' as canonical name (possible typo) src/Makefile.am:839: warning: variable 'gfilter_sse42_LDADD' is defined but no program or src/Makefile.am:839: library has 'gfilter_sse42' as canonical name (possible typo) src/Makefile.am:827: warning: variable 'gfilter_ssse3_LDADD' is defined but no program or src/Makefile.am:827: library has 'gfilter_ssse3' as canonical name (possible typo) src/Makefile.am:1131: warning: variable 'iit_pileup_LDADD' is defined but no program or src/Makefile.am:1131: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:1153: warning: variable 'sam_sort_LDADD' is defined but no program or src/Makefile.am:1153: library has 'sam_sort' as canonical name (possible typo) src/Makefile.am:1171: warning: variable 'umi_correct_LDADD' is defined but no program or src/Makefile.am:1171: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:1190: warning: variable 'velocity_counts_LDADD' is defined but no program or src/Makefile.am:1190: library has 'velocity_counts' as canonical name (possible typo) src/Makefile.am:868: warning: variable 'compare2truth_LDFLAGS' is defined but no program or src/Makefile.am:868: library has 'compare2truth' as canonical name (possible typo) src/Makefile.am:1214: warning: variable 'gcount_bulk_LDFLAGS' is defined but no program or src/Makefile.am:1214: library has 'gcount_bulk' as canonical name (possible typo) src/Makefile.am:1240: warning: variable 'gcount_sc_LDFLAGS' is defined but no program or src/Makefile.am:1240: library has 'gcount_sc' as canonical name (possible typo) src/Makefile.am:214: warning: variable 'gexact_LDFLAGS' is defined but no program or src/Makefile.am:214: library has 'gexact' as canonical name (possible typo) src/Makefile.am:740: warning: variable 'gexact_arm_LDFLAGS' is defined but no program or src/Makefile.am:740: library has 'gexact_arm' as canonical name (possible typo) src/Makefile.am:770: warning: variable 'gexact_avx2_LDFLAGS' is defined but no program or src/Makefile.am:770: library has 'gexact_avx2' as canonical name (possible typo) src/Makefile.am:776: warning: variable 'gexact_avx512_LDFLAGS' is defined but no program or src/Makefile.am:776: library has 'gexact_avx512' as canonical name (possible typo) src/Makefile.am:782: warning: variable 'gexact_avx512bw_LDFLAGS' is defined but no program or src/Makefile.am:782: library has 'gexact_avx512bw' as canonical name (possible typo) src/Makefile.am:734: warning: variable 'gexact_nosimd_LDFLAGS' is defined but no program or src/Makefile.am:734: library has 'gexact_nosimd' as canonical name (possible typo) src/Makefile.am:746: warning: variable 'gexact_sse2_LDFLAGS' is defined but no program or src/Makefile.am:746: library has 'gexact_sse2' as canonical name (possible typo) src/Makefile.am:758: warning: variable 'gexact_sse41_LDFLAGS' is defined but no program or src/Makefile.am:758: library has 'gexact_sse41' as canonical name (possible typo) src/Makefile.am:764: warning: variable 'gexact_sse42_LDFLAGS' is defined but no program or src/Makefile.am:764: library has 'gexact_sse42' as canonical name (possible typo) src/Makefile.am:752: warning: variable 'gexact_ssse3_LDFLAGS' is defined but no program or src/Makefile.am:752: library has 'gexact_ssse3' as canonical name (possible typo) src/Makefile.am:221: warning: variable 'gfilter_LDFLAGS' is defined but no program or src/Makefile.am:221: library has 'gfilter' as canonical name (possible typo) src/Makefile.am:814: warning: variable 'gfilter_arm_LDFLAGS' is defined but no program or src/Makefile.am:814: library has 'gfilter_arm' as canonical name (possible typo) src/Makefile.am:844: warning: variable 'gfilter_avx2_LDFLAGS' is defined but no program or src/Makefile.am:844: library has 'gfilter_avx2' as canonical name (possible typo) src/Makefile.am:850: warning: variable 'gfilter_avx512_LDFLAGS' is defined but no program or src/Makefile.am:850: library has 'gfilter_avx512' as canonical name (possible typo) src/Makefile.am:856: warning: variable 'gfilter_avx512bw_LDFLAGS' is defined but no program or src/Makefile.am:856: library has 'gfilter_avx512bw' as canonical name (possible typo) src/Makefile.am:808: warning: variable 'gfilter_nosimd_LDFLAGS' is defined but no program or src/Makefile.am:808: library has 'gfilter_nosimd' as canonical name (possible typo) src/Makefile.am:820: warning: variable 'gfilter_sse2_LDFLAGS' is defined but no program or src/Makefile.am:820: library has 'gfilter_sse2' as canonical name (possible typo) src/Makefile.am:832: warning: variable 'gfilter_sse41_LDFLAGS' is defined but no program or src/Makefile.am:832: library has 'gfilter_sse41' as canonical name (possible typo) src/Makefile.am:838: warning: variable 'gfilter_sse42_LDFLAGS' is defined but no program or src/Makefile.am:838: library has 'gfilter_sse42' as canonical name (possible typo) src/Makefile.am:826: warning: variable 'gfilter_ssse3_LDFLAGS' is defined but no program or src/Makefile.am:826: library has 'gfilter_ssse3' as canonical name (possible typo) src/Makefile.am:1130: warning: variable 'iit_pileup_LDFLAGS' is defined but no program or src/Makefile.am:1130: library has 'iit_pileup' as canonical name (possible typo) src/Makefile.am:1152: warning: variable 'sam_sort_LDFLAGS' is defined but no program or src/Makefile.am:1152: library has 'sam_sort' as canonical name (possible typo) src/Makefile.am:1170: warning: variable 'umi_correct_LDFLAGS' is defined but no program or src/Makefile.am:1170: library has 'umi_correct' as canonical name (possible typo) src/Makefile.am:1189: warning: variable 'velocity_counts_LDFLAGS' is defined but no program or src/Makefile.am:1189: library has 'velocity_counts' as canonical name (possible typo) parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' rm -Rf src/simde DEB_CFLAGS_MAINT_APPEND="-O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI" dh_auto_configure --reload-all-buildenv-variables -- --with-gmapdb=/var/cache/gmap \ --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2 cd build && ../configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2 checking package version... 2024-11-20 configure: error: cannot find /etc/dpkg-cross/cross-config.amd64 cd build && tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by gmap configure 2024-11-20, which was generated by GNU Autoconf 2.72. Invocation command line was $ ../configure --build=aarch64-linux-gnu --prefix=/usr '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules '--libdir=${prefix}/lib/x86_64-linux-gnu' --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2 ## --------- ## ## Platform. ## ## --------- ## hostname = sbuild uname -m = aarch64 uname -r = 6.1.0-28-arm64 uname -s = Linux uname -v = #1 SMP Debian 6.1.119-1 (2024-11-22) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = aarch64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin/ PATH: /usr/local/bin/ PATH: /usr/sbin/ PATH: /usr/bin/ PATH: /sbin/ PATH: /bin/ PATH: /usr/games/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:2750: looking for aux files: missing install-sh compile config.guess config.sub configure:2763: trying ../config/ configure:2792: ../config/missing found configure:2774: ../config/install-sh found configure:2792: ../config/compile found configure:2792: ../config/config.guess found configure:2792: ../config/config.sub found configure:2904: checking package version configure:2906: result: 2024-11-20 configure:2937: error: cannot find /etc/dpkg-cross/cross-config.amd64 ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=aarch64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='' ALLOCA='' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='' AM_BACKSLASH='' AM_DEFAULT_V='' AM_DEFAULT_VERBOSITY='' AM_V='' AUTOCONF='' AUTOHEADER='' AUTOMAKE='' AWK='' BINDIR='' BZLIB_LIBS='' CC='' CCDEPMODE='' CFLAGS='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CSCOPE='' CTAGS='' CYGPATH_W='' DEFS='' DEPDIR='' ECHO_C='' ECHO_N='-n' ECHO_T='' ETAGS='' EXEEXT='' FULLDIST_FALSE='' FULLDIST_TRUE='' GMAPDB='' HAVE_INLINE='' INSTALL_DATA='' INSTALL_PROGRAM='' INSTALL_SCRIPT='' INSTALL_STRIP_PROGRAM='' LDFLAGS='-Wl,-z,relro -Wl,-z,now' LIBGMAP_SO_VERSION='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAINT='' MAINTAINER_FALSE='' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='' MAINTAINER_TRUE='' MAKEINFO='' MAKE_ARM_FALSE='' MAKE_ARM_TRUE='' MAKE_AVX2_FALSE='' MAKE_AVX2_TRUE='' MAKE_AVX512BW_FALSE='' MAKE_AVX512BW_TRUE='' MAKE_AVX512_FALSE='' MAKE_AVX512_TRUE='' MAKE_SSE2_FALSE='' MAKE_SSE2_TRUE='' MAKE_SSE4_1_FALSE='' MAKE_SSE4_1_TRUE='' MAKE_SSE4_2_FALSE='' MAKE_SSE4_2_TRUE='' MAKE_SSSE3_FALSE='' MAKE_SSSE3_TRUE='' MKDIR_P='' OBJEXT='' PACKAGE='' PACKAGE_BUGREPORT='Thomas Wu ' PACKAGE_NAME='gmap' PACKAGE_STRING='gmap 2024-11-20' PACKAGE_TARNAME='gmap' PACKAGE_URL='' PACKAGE_VERSION='2024-11-20' PATH_SEPARATOR=':' PERL='' POPCNT_CFLAGS='' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' SET_MAKE='' SHELL='/bin/bash' SIMD_AVX2_CFLAGS='' SIMD_AVX512_CFLAGS='' SIMD_SSE2_CFLAGS='' SIMD_SSE4_1_CFLAGS='' SIMD_SSE4_2_CFLAGS='' SIMD_SSSE3_CFLAGS='' STRIP='' VERSION='' ZLIB_LIBS='' ac_ct_CC='' acx_pthread_config='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__include='' am__isrc='' am__leading_dot='' am__nodep='' am__quote='' am__tar='' am__untar='' bindir='/usr/lib/gmap' build='aarch64-linux-gnu' build_alias='aarch64-linux-gnu' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-linux-gnu' host_alias='x86_64-linux-gnu' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='' target_alias='' target_cpu='' target_os='' target_vendor='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "gmap" #define PACKAGE_TARNAME "gmap" #define PACKAGE_VERSION "2024-11-20" #define PACKAGE_STRING "gmap 2024-11-20" #define PACKAGE_BUGREPORT "Thomas Wu " #define PACKAGE_URL "" configure: exit 1 dh_auto_configure: error: cd build && ../configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2 returned exit code 1 make[1]: *** [debian/rules:22: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:17: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-12-31T05:45:47Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 397 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 48 Job: gmap_2024-11-20+ds-1 Machine Architecture: arm64 Package: gmap Package-Time: 494 Source-Version: 2024-11-20+ds-1 Space: n/a Status: attempted Version: 2024-11-20+ds-1 -------------------------------------------------------------------------------- Finished at 2024-12-31T05:45:47Z Build needed 00:08:14, no disk space