sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | hhsuite 3.3.0+ds-8 (amd64) Thu, 31 Oct 2024 19:15:58 +0000 | +==============================================================================+ Package: hhsuite Version: 3.3.0+ds-8 Source Version: 3.3.0+ds-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.pSpl_n8zuy... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-hqublH/resolver-YLjsWG' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [202 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.9 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9933 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [10.0 MB] Fetched 31.1 MB in 8s (4012 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: coreutils dash debianutils diffutils grep gzip libacl1 libaudit-common libaudit1 libcap2 libdebconfclient0 libgmp10 libgnutls30t64 libjansson4 liblz4-1 libssl3t64 linux-libc-dev make openssl-provider-legacy patch rpcsvc-proto 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.0 MB of archives. After this operation, 165 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 coreutils arm64 9.5-1+b1 [2858 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 debianutils arm64 5.20+b1 [89.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 dash arm64 0.5.12-9+b1 [91.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 diffutils arm64 1:3.10-1+b1 [373 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 grep arm64 3.11-4+b1 [426 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 gzip arm64 1.12-1.1+b1 [131 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libaudit-common all 1:4.0.1-2 [12.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libaudit1 arm64 1:4.0.1-2 [53.8 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libcap2 arm64 1:2.66-5+b1 [27.2 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libdebconfclient0 arm64 0.272+b1 [10.5 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2+b2 [535 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.6-2+b1 [1355 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 liblz4-1 arm64 1.9.4-3+b1 [55.8 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 openssl-provider-legacy arm64 3.3.2-2 [296 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libssl3t64 arm64 3.3.2-2 [2600 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev all 6.11.5-1 [2443 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 make arm64 4.3-4.1+b1 [372 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 patch arm64 2.7.6-7+b1 [118 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.0 MB in 0s (69.3 MB/s) (Reading database ... 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Unpacking patch (2.7.6-7+b1) over (2.7.6-7) ... Preparing to unpack .../rpcsvc-proto_1.4.3-1+b1_arm64.deb ... Unpacking rpcsvc-proto (1.4.3-1+b1) over (1.4.3-1) ... Setting up linux-libc-dev (6.11.5-1) ... Setting up libjansson4:arm64 (2.14-2+b3) ... Setting up rpcsvc-proto (1.4.3-1+b1) ... Setting up make (4.3-4.1+b1) ... Setting up patch (2.7.6-7+b1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for debianutils (5.20+b1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4794 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-8 (dsc) [2271 B] Get:2 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-8 (tar) [4775 kB] Get:3 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-8 (diff) [16.9 kB] Fetched 4794 kB in 0s (15.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hhsuite-hqublH/hhsuite-3.3.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-hqublH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [801 B] Fetched 2168 B in 0s (108 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0t64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblocale-gettext-perl liblqr-1-0 liblsan0:amd64 liblsan0-amd64-cross libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtiff6 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff imagemagick-7-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig libraw-bin xdg-utils lrzip glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libfftw3-bin libfftw3-dev low-memory-monitor krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libstdc++-14-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libmagickcore-7.q16-10-extra ghostscript netpbm libidn2-0:amd64 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0t64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libitm1:amd64 libitm1-amd64-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblocale-gettext-perl liblqr-1-0 liblsan0:amd64 liblsan0-amd64-cross libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtiff6 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils 0 upgraded, 144 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After this operation, 547 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2 [337 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.18.2-2 [10.9 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.18.2-2 [14.1 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libheif1 arm64 1.18.2-2 [272 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b1 [26.7 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-7+b2 [393 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libraw23t64 arm64 0.21.3-1 [370 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b2 [154 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-2 [129 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.1.39+dfsg1-1 [66.6 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.39+dfsg1-1 [1648 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.39+dfsg1-1 [267 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5-2 [124 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu-base arm64 14.2.0-6cross1 [46.9 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 cpp-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [10.4 MB] Get:84 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:14.2.0-1 [4852 B] Get:85 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.43.1-5 [2440 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14.2.0-6cross1 [72.7 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14.2.0-6cross1 [129 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14.2.0-6cross1 [25.3 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14.2.0-6cross1 [8984 B] Get:91 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14.2.0-6cross1 [2718 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14.2.0-6cross1 [1204 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14.2.0-6cross1 [2449 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.40-3cross1 [1532 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14.2.0-6cross1 [665 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14.2.0-6cross1 [1074 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14.2.0-6cross1 [1485 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14.2.0-6cross1 [145 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-amd64-cross all 14.2.0-6cross1 [2669 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [20.0 MB] Get:101 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:14.2.0-1 [1448 B] Get:102 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.11.2-1cross1 [2266 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.40-3cross1 [1949 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-amd64-cross all 14.2.0-6cross1 [2347 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 g++-14-x86-64-linux-gnu arm64 14.2.0-6cross1 [11.3 MB] Get:106 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:14.2.0-1 [1204 B] Get:107 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:108 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.36-1 [29.1 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.36-1 [74.4 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14.2.0-7 [46.9 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.1.39+dfsg1-1 [712 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 imagemagick arm64 8:7.1.1.39+dfsg1-1 [19.7 kB] Get:127 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-7 [72.8 kB] Get:128 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.40-3 [2807 kB] Get:129 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14.2.0-7 [2729 kB] Get:130 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14.2.0-7 [9284 B] Get:131 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB] Get:132 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:133 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.40-3 [1956 kB] Get:134 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14.2.0-7 [137 kB] Get:135 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14.2.0-7 [26.0 kB] Get:136 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14.2.0-7 [1205 kB] Get:137 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14.2.0-7 [2460 kB] Get:138 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14.2.0-7 [713 kB] Get:139 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14.2.0-7 [1075 kB] Get:140 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14.2.0-7 [1489 kB] Get:141 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14.2.0-7 [145 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-7 [2673 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-7 [2368 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 MB in 2s (85.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12050 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../001-libfftw3-double3_3.3.10-2_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../002-libexpat1_2.6.3-2_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../003-libbrotli1_1.1.0-2+b5_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b5) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../004-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. 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Unpacking imagemagick-7.q16 (8:7.1.1.39+dfsg1-1) ... Selecting previously unselected package imagemagick. Preparing to unpack .../124-imagemagick_8%3a7.1.1.39+dfsg1-1_arm64.deb ... Unpacking imagemagick (8:7.1.1.39+dfsg1-1) ... Selecting previously unselected package libgcc-s1:amd64. Preparing to unpack .../125-libgcc-s1_14.2.0-7_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-7) ... Selecting previously unselected package libc6:amd64. Preparing to unpack .../126-libc6_2.40-3_amd64.deb ... Unpacking libc6:amd64 (2.40-3) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../127-libasan8_14.2.0-7_amd64.deb ... Unpacking libasan8:amd64 (14.2.0-7) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../128-libatomic1_14.2.0-7_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-7) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../129-libcrypt1_1%3a4.4.36-5_amd64.deb ... 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Selecting previously unselected package libstdc++-14-dev:amd64. Preparing to unpack .../142-libstdc++-14-dev_14.2.0-7_amd64.deb ... Unpacking libstdc++-14-dev:amd64 (14.2.0-7) ... Selecting previously unselected package sbuild-build-depends-main-dummy:amd64. Preparing to unpack .../143-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Setting up libexpat1:arm64 (2.6.3-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up gcc-14-x86-64-linux-gnu-base:arm64 (14.2.0-6cross1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up linux-libc-dev-amd64-cross (6.11.2-1cross1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b2) ... Setting up bsdextrautils (2.40.2-9) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up gcc-14-base:amd64 (14.2.0-7) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up imagemagick-7-common (8:7.1.1.39+dfsg1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b5) ... Setting up libuv1t64:arm64 (1.48.0-6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libgomp1-amd64-cross (14.2.0-6cross1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libfakeroot:arm64 (1.36-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libitm1-amd64-cross (14.2.0-6cross1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libatomic1-amd64-cross (14.2.0-6cross1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libjsoncpp26:arm64 (1.9.6-2) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libquadmath0-amd64-cross (14.2.0-6cross1) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up libc6-amd64-cross (2.40-3cross1) ... Setting up libncursesw6:arm64 (6.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libltdl7:arm64 (2.4.7-7+b2) ... Setting up libfftw3-double3:arm64 (3.3.10-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libraw23t64:arm64 (0.21.3-1) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:arm64 (1.5.0-1+b1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-6) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libde265-0:arm64 (1.0.15-1+b2) ... Setting up libgcc-s1-amd64-cross (14.2.0-6cross1) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libbsd0:arm64 (0.12.2-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up binutils-x86-64-linux-gnu (2.43.1-5) ... Setting up libstdc++6-amd64-cross (14.2.0-6cross1) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up libxcb1:arm64 (1.17.0-2) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libasan8-amd64-cross (14.2.0-6cross1) ... Setting up liblsan0-amd64-cross (14.2.0-6cross1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libc6-dev-amd64-cross (2.40-3cross1) ... Setting up libtsan2-amd64-cross (14.2.0-6cross1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libhwasan0-amd64-cross (14.2.0-6cross1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libubsan1-amd64-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgcc-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up groff-base (1.23.0-5) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up libarchive13t64:arm64 (3.7.4-1) ... Setting up libstdc++-14-dev-amd64-cross (14.2.0-6cross1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libcurl4t64:arm64 (8.10.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up g++-14-x86-64-linux-gnu (14.2.0-6cross1) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libheif-plugin-dav1d:arm64 (1.18.2-2) ... Setting up libheif1:arm64 (1.18.2-2) ... Setting up libgcc-s1:amd64 (14.2.0-7) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.39+dfsg1-1) ... Setting up libc6:amd64 (2.40-3) ... Setting up libhwasan0:amd64 (14.2.0-7) ... Setting up libasan8:amd64 (14.2.0-7) ... Setting up libtsan2:amd64 (14.2.0-7) ... Setting up libstdc++6:amd64 (14.2.0-7) ... Setting up liblsan0:amd64 (14.2.0-7) ... Setting up libitm1:amd64 (14.2.0-7) ... Setting up libheif-plugin-libde265:arm64 (1.18.2-2) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.39+dfsg1-1) ... Setting up libcrypt1:amd64 (1:4.4.36-5) ... Setting up libgomp1:amd64 (14.2.0-7) ... Setting up libquadmath0:amd64 (14.2.0-7) ... Setting up libatomic1:amd64 (14.2.0-7) ... Setting up libubsan1:amd64 (14.2.0-7) ... Setting up libcrypt-dev:amd64 (1:4.4.36-5) ... Setting up libc6-dev:amd64 (2.40-3) ... Setting up libgcc-14-dev:amd64 (14.2.0-7) ... Setting up libstdc++-14-dev:amd64 (14.2.0-7) ... Setting up imagemagick-7.q16 (8:7.1.1.39+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode Setting up imagemagick (8:7.1.1.39+dfsg1-1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (13.5) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-25-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-7 libstdc++6-amd64-cross_14.2.0-6cross1 linux-libc-dev_6.11.5-1 Package versions: apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 cmake_3.30.5-1 cmake-data_3.30.5-1 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-14-x86-64-linux-gnu_14.2.0-6cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-amd64_12.12 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20+b1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 fontconfig-config_2.15.0-1.1+b1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-14-x86-64-linux-gnu_14.2.0-6cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 gcc-14-aarch64-linux-gnu_14.2.0-7 gcc-14-base_14.2.0-7 gcc-14-cross-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-6cross1 gcc-14-x86-64-linux-gnu-base_14.2.0-6cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.45-1 grep_3.11-4+b1 groff-base_1.23.0-5 gzip_1.12-1.1+b1 help2man_1.49.3+b1 hicolor-icon-theme_0.18-1 hostname_3.25 imagemagick_8:7.1.1.39+dfsg1-1 imagemagick-7-common_8:7.1.1.39+dfsg1-1 imagemagick-7.q16_8:7.1.1.39+dfsg1-1 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.10 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-1 libasan8_14.2.0-7 libasan8-amd64-cross_14.2.0-6cross1 libatomic1_14.2.0-7 libatomic1-amd64-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-2 libaudit1_1:4.0.1-2 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libbrotli1_1.1.0-2+b5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-amd64-cross_2.40-3cross1 libc6-dev_2.40-3 libc6-dev-amd64-cross_2.40-3cross1 libcap-ng0_0.8.5-3 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-7 libcom-err2_1.47.1-1+b1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libcurl4t64_8.10.1-2 libdav1d7_1.5.0-1+b1 libdb5.3t64_5.3.28+dfsg2-9 libde265-0_1.0.15-1+b2 libdebconfclient0_0.272+b1 libdebhelper-perl_13.20 libdeflate0_1.22-1 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libexpat1_2.6.3-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfftw3-double3_3.3.10-2 libfile-stripnondeterminism-perl_1.14.0-1 libfontconfig1_2.15.0-1.1+b1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-7 libgcc-14-dev-amd64-cross_14.2.0-6cross1 libgcc-s1_14.2.0-7 libgcc-s1-amd64-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libglib2.0-0t64_2.82.2-2 libgmp10_2:6.3.0+dfsg-2+b2 libgnutls30t64_3.8.6-2+b1 libgomp1_14.2.0-7 libgomp1-amd64-cross_14.2.0-6cross1 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libheif-plugin-dav1d_1.18.2-2 libheif-plugin-libde265_1.18.2-2 libheif1_1.18.2-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-7 libhwasan0-amd64-cross_14.2.0-6cross1 libicu72_72.1-5+b1 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-7 libitm1-amd64-cross_14.2.0-6cross1 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-3 libjsoncpp26_1.9.6-2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 liblcms2-2_2.16-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblerc4_4.0.0+ds-4+b2 liblocale-gettext-perl_1.07-7+b1 liblqr-1-0_0.4.2-2.1+b1 liblsan0_14.2.0-7 liblsan0-amd64-cross_14.2.0-6cross1 libltdl7_2.4.7-7+b2 liblz4-1_1.9.4-3+b1 liblzma5_5.6.3-1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmagickcore-7.q16-10_8:7.1.1.39+dfsg1-1 libmagickwand-7.q16-10_8:7.1.1.39+dfsg1-1 libmd0_1.1.0-2 libmount1_2.40.2-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnghttp2-14_1.64.0-1 libopenjp2-7_2.5.0-2+b3 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.40_5.40.0-6 libpipeline1_1.5.8-1 libpng16-16t64_1.6.44-2 libproc2-0_2:4.0.4-6 libpsl5t64_0.21.2-1.1 libquadmath0_14.2.0-7 libquadmath0-amd64-cross_14.2.0-6cross1 libraw23t64_0.21.3-1 librhash1_1.4.5-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsframe1_2.43.1-5 libsharpyuv0_1.4.0-0.1 libsimde-dev_0.8.2-1 libsmartcols1_2.40.2-9 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-7 libstdc++-14-dev-amd64-cross_14.2.0-6cross1 libstdc++6_14.2.0-7 libstdc++6-amd64-cross_14.2.0-6cross1 libsystemd0_256.7-2 libtasn1-6_4.19.0-3+b2 libtiff6_4.5.1+git230720-5 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-7 libtsan2-amd64-cross_14.2.0-6cross1 libubsan1_14.2.0-7 libubsan1-amd64-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b1 libudev1_256.7-2 libunistring5_1.2-1 libuuid1_2.40.2-9 libuv1t64_1.48.0-6 libwebp7_1.4.0-0.1 libwebpdemux2_1.4.0-0.1 libwebpmux3_1.4.0-0.1 libx11-6_2:1.8.7-1+b1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1+b1 libxcb1_1.17.0-2 libxdmcp6_1:1.1.2-3+b1 libxext6_2:1.3.4-1+b2 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.11.5-1 linux-libc-dev-amd64-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1+b1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-2 patch_2.7.6-7+b1 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3 util-linux_2.40.2-9 xz-utils_5.6.3-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hhsuite Binary: hhsuite, hhsuite-data Architecture: any all Version: 3.3.0+ds-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Sascha Steinbiss Homepage: https://toolkit.tuebingen.mpg.de/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man Package-List: hhsuite deb science optional arch=any hhsuite-data deb science optional arch=all Checksums-Sha1: d90462ba593366296d8916e184b42325caa4201b 4775072 hhsuite_3.3.0+ds.orig.tar.xz 0c6aa80d717ee79df31a05f33d2f461b1b6f0c88 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Checksums-Sha256: a81037f2e2a4801f1a42f5aa5939334fe038053d05ceabdc0899fefb8cc00a44 4775072 hhsuite_3.3.0+ds.orig.tar.xz d408a3d42581737068f06b96cd922c462f672beeb4faf94f41ac37340170b3cb 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Files: d01293f2b8337f9b914b30976c2a87e9 4775072 hhsuite_3.3.0+ds.orig.tar.xz 81b05abfd099550bfb153063e218961e 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Dgit: 140af672217dfdd27cb9e04f647e16721cab7092 debian archive/debian/3.3.0+ds-8 https://git.dgit.debian.org/hhsuite -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTYqGkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoEMA/+LuZTmLibgbYZApaOGZdaX+PkhrsA zfcKaSk3+e/HPlWNU154xxOVy+O+Y5pCo/EknRdiMEmQPW4Xp5CJOKEFkJE98rpu zorYV6MrnGZbtce76kYae9bIOO7ufuZgOmJQmC8o4Br1ARVzcdb0CoeT/I/YlUaO 1GeZ7FRxPV5+2FnJepnZtN3pVs9flLqfmjkTUpuXunVczXQ/9OqQDHLl+9FRuW9l G/rWE7wu1PZC12UYSIOaCP5ZLWBdD8aTCrD787zdv7NEdhH19LJmrpNiaV9pUmbn 1gWsCwnOkTJPw49XsA6PmabKG3eigVh/vX9OPCyUIFlwsgWk1j59a6iuRdVfKKec tu6iS43HxaDNpmr9RDMPwRy0IJyzFVVfefcFEkiq81xvXWeCyZaIMZG1jiprbitC n17iBZeZbuSNpVfwA8afeBsxfEQF5mMa14pv0b1tYMxFySu578muNQulSbVHRyIm U1EV7JmoLcrAdNisorrWjHxsreQpWDWoTtttMhQiHGRAqusHl3AfNChpj1VdctFp DLSXPJR57EGgm6Wh/l/dcAsYsoTRxoZwIslbpyajyZLIMgJsBYXU+aQyAnnix+KN OKWs50hmPC09YXC7cia0qp2IlQaR/Si5jpY2nDoxi115qKH1z6k+s49gHHEXcZGP OCf9WhUaFjSQ0Yk= =W1CO -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 13 09:54:49 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hhsuite_3.3.0+ds-8.dsc: no acceptable signature found dpkg-source: info: extracting hhsuite in /<> dpkg-source: info: unpacking hhsuite_3.3.0+ds.orig.tar.xz dpkg-source: info: unpacking hhsuite_3.3.0+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_without_mpi dpkg-source: info: applying perlscript_uselib dpkg-source: info: applying perl_interpreter dpkg-source: info: applying drop-fmemopen.h.patch dpkg-source: info: applying python3 dpkg-source: info: applying ppc64el.patch dpkg-source: info: applying exe_suffix dpkg-source: info: applying gcc-13.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.3.0+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} -DNATIVE_ARCH=0; \ done cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx2 -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx2 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx cd build_sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse4.1 -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse4.1 cd build_ssse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-ssse3 -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_ssse3 cd build_sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse3 -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse3 export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 cd build_plain && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.6s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_plain make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_build --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles /<>/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_avx2' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx2' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx2' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_avx2' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx2' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx2' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx2/lib/ffindex/src && 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-I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_avx2' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx2' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx2' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx2 /<>/build_avx2/data /<>/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx2' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx2/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.crf.h > /<>/build_avx2/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.crf.h.tmp /<>/build_avx2/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx2/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.lib.h > /<>/build_avx2/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.lib.h.tmp /<>/build_avx2/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx2/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/cs219.lib.h > /<>/build_avx2/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/cs219.lib.h.tmp /<>/build_avx2/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx2' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx2' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx2' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx2 /<>/build_avx2/src/cs /<>/build_avx2/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx2/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o" -o hhblits-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 70%] Built target hhblits-avx2 make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhmake-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o" -o hhmake-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 72%] Built target hhmake-avx2 make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhfilter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o" -o hhfilter-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 74%] Built target hhfilter-avx2 make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o" -o hhsearch-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 76%] Built target hhsearch-avx2 make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o" -o hhalign-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 78%] Built target hhalign-avx2 make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhconsensus-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o" -o hhconsensus-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 80%] Built target hhconsensus-avx2 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o" -o a3m_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 83%] Built target a3m_extract-avx2 make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 85%] Built target a3m_reduce-avx2 make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 87%] Built target a3m_database_reduce-avx2 make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 89%] Built target a3m_database_extract-avx2 make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_filter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 91%] Built target a3m_database_filter-avx2 make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/cstranslate-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx2 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 92%] Built target cstranslate-avx2 make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 94%] Built target hhblits_omp-avx2 make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 96%] Built target hhsearch_omp-avx2 make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 98%] Built target hhalign_omp-avx2 make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_ca3m-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [100%] Built target hhblits_ca3m-avx2 make[3]: Leaving directory '/<>/build_avx2' /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles /<>/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_avx' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_avx' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_avx' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_avx' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx /<>/build_avx/data /<>/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.crf.h > /<>/build_avx/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.crf.h.tmp /<>/build_avx/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.lib.h > /<>/build_avx/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.lib.h.tmp /<>/build_avx/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/cs219.lib.h > /<>/build_avx/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/cs219.lib.h.tmp /<>/build_avx/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx /<>/build_avx/src/cs /<>/build_avx/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o" -o hhblits-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 70%] Built target hhblits-avx make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhmake-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-avx.dir/hhmake.cpp.o" -o hhmake-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 72%] Built target hhmake-avx make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhfilter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o" -o hhfilter-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 74%] Built target hhfilter-avx make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o" -o hhsearch-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 76%] Built target hhsearch-avx make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o" -o hhalign-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 78%] Built target hhalign-avx make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhconsensus-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o" -o hhconsensus-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 80%] Built target hhconsensus-avx make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o" -o a3m_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 83%] Built target a3m_extract-avx make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 85%] Built target a3m_reduce-avx make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 87%] Built target a3m_database_reduce-avx make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 89%] Built target a3m_database_extract-avx make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_filter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 91%] Built target a3m_database_filter-avx make -f src/CMakeFiles/cstranslate-avx.dir/build.make src/CMakeFiles/cstranslate-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/cstranslate-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/cstranslate-avx.dir/build.make src/CMakeFiles/cstranslate-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 92%] Built target cstranslate-avx make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 94%] Built target hhblits_omp-avx make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 96%] Built target hhsearch_omp-avx make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 98%] Built target hhalign_omp-avx make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_ca3m-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [100%] Built target hhblits_ca3m-avx make[3]: Leaving directory '/<>/build_avx' /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles /<>/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse4.1 /<>/build_sse4.1/data /<>/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse4.1/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.crf.h > /<>/build_sse4.1/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.crf.h.tmp /<>/build_sse4.1/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse4.1/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.lib.h > /<>/build_sse4.1/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.lib.h.tmp /<>/build_sse4.1/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse4.1/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/cs219.lib.h > /<>/build_sse4.1/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/cs219.lib.h.tmp /<>/build_sse4.1/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse4.1' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse4.1' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse4.1 /<>/build_sse4.1/src/cs /<>/build_sse4.1/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o" -o hhblits-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 70%] Built target hhblits-sse4.1 make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhmake-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o" -o hhmake-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 72%] Built target hhmake-sse4.1 make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhfilter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o" -o hhfilter-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 74%] Built target hhfilter-sse4.1 make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o" -o hhsearch-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 76%] Built target hhsearch-sse4.1 make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o" -o hhalign-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 78%] Built target hhalign-sse4.1 make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhconsensus-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o" -o hhconsensus-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 80%] Built target hhconsensus-sse4.1 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o" -o a3m_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 83%] Built target a3m_extract-sse4.1 make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 85%] Built target a3m_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 87%] Built target a3m_database_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 89%] Built target a3m_database_extract-sse4.1 make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_filter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 91%] Built target a3m_database_filter-sse4.1 make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/cstranslate-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse4.1 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 92%] Built target cstranslate-sse4.1 make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 94%] Built target hhblits_omp-sse4.1 make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 96%] Built target hhsearch_omp-sse4.1 make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 98%] Built target hhalign_omp-sse4.1 make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_ca3m-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [100%] Built target hhblits_ca3m-sse4.1 make[3]: Leaving directory '/<>/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles /<>/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_ssse3 /<>/build_ssse3/data /<>/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_ssse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.crf.h > /<>/build_ssse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.crf.h.tmp /<>/build_ssse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_ssse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.lib.h > /<>/build_ssse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.lib.h.tmp /<>/build_ssse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_ssse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/cs219.lib.h > /<>/build_ssse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/cs219.lib.h.tmp /<>/build_ssse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_ssse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o 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/<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_ssse3 /<>/build_ssse3/src/cs /<>/build_ssse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_ssse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o" -o hhblits-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 70%] Built target hhblits-ssse3 make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhmake-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o" -o hhmake-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 72%] Built target hhmake-ssse3 make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhfilter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o" -o hhfilter-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 74%] Built target hhfilter-ssse3 make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o" -o hhsearch-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 76%] Built target hhsearch-ssse3 make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o" -o hhalign-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 78%] Built target hhalign-ssse3 make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhconsensus-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o" -o hhconsensus-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 80%] Built target hhconsensus-ssse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o" -o a3m_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 83%] Built target a3m_extract-ssse3 make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 85%] Built target a3m_reduce-ssse3 make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 87%] Built target a3m_database_reduce-ssse3 make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 89%] Built target a3m_database_extract-ssse3 make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_filter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 91%] Built target a3m_database_filter-ssse3 make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/cstranslate-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-ssse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 92%] Built target cstranslate-ssse3 make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 94%] Built target hhblits_omp-ssse3 make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 96%] Built target hhsearch_omp-ssse3 make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 98%] Built target hhalign_omp-ssse3 make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_ca3m-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [100%] Built target hhblits_ca3m-ssse3 make[3]: Leaving directory '/<>/build_ssse3' /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles /<>/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse3' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse3 /<>/build_sse3/data /<>/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.crf.h > /<>/build_sse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.crf.h.tmp /<>/build_sse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.lib.h > /<>/build_sse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.lib.h.tmp /<>/build_sse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/cs219.lib.h > /<>/build_sse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/cs219.lib.h.tmp /<>/build_sse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse3' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse3 /<>/build_sse3/src/cs /<>/build_sse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o" -o hhblits-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 70%] Built target hhblits-sse3 make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhmake-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o" -o hhmake-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 72%] Built target hhmake-sse3 make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhfilter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o" -o hhfilter-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 74%] Built target hhfilter-sse3 make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o" -o hhsearch-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 76%] Built target hhsearch-sse3 make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o" -o hhalign-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 78%] Built target hhalign-sse3 make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhconsensus-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o" -o hhconsensus-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 80%] Built target hhconsensus-sse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o" -o a3m_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 83%] Built target a3m_extract-sse3 make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 85%] Built target a3m_reduce-sse3 make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 87%] Built target a3m_database_reduce-sse3 make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 89%] Built target a3m_database_extract-sse3 make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_filter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 91%] Built target a3m_database_filter-sse3 make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/cstranslate-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 92%] Built target cstranslate-sse3 make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 94%] Built target hhblits_omp-sse3 make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 96%] Built target hhsearch_omp-sse3 make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 98%] Built target hhalign_omp-sse3 make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_ca3m-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [100%] Built target hhblits_ca3m-sse3 make[3]: Leaving directory '/<>/build_sse3' /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles /<>/build_plain//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_plain' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_plain' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_plain' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic 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-I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving 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-Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving 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-ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 13%] Built target ffindex_get make -f 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make 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'/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_plain' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_plain' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 21%] Built target 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/<>/build_plain/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_plain/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/context_data.lib.h > /<>/build_plain/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/context_data.lib.h.tmp /<>/build_plain/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_plain/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/cs219.lib.h > /<>/build_plain/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/cs219.lib.h.tmp /<>/build_plain/generated/cs219.lib.h make[4]: Leaving directory 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a 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/<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_plain' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_plain /<>/build_plain/src/cs /<>/build_plain/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_plain/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 69%] Building CXX object src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o" -o hhblits-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 70%] Built target hhblits-plain make -f src/CMakeFiles/hhmake-plain.dir/build.make src/CMakeFiles/hhmake-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhmake-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhmake-plain.dir/build.make src/CMakeFiles/hhmake-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 71%] Building CXX object src/CMakeFiles/hhmake-plain.dir/hhmake.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-plain.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-plain.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-plain.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhmake-plain.dir/hhmake.cpp.o" -o hhmake-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 72%] Built target hhmake-plain make -f src/CMakeFiles/hhfilter-plain.dir/build.make src/CMakeFiles/hhfilter-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhfilter-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhfilter-plain.dir/build.make src/CMakeFiles/hhfilter-plain.dir/build 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src/CMakeFiles/hhconsensus-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhconsensus-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhconsensus-plain.dir/build.make src/CMakeFiles/hhconsensus-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char 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libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 80%] Built target hhconsensus-plain make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_plain' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/14/string:49, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/ostream:40, from /usr/x86_64-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_extract-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o" -o a3m_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 83%] Built target a3m_extract-plain make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o" -o a3m_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 85%] Built target a3m_reduce-plain make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 87%] Built target a3m_database_reduce-plain make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_extract-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 89%] Built target a3m_database_extract-plain make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_filter-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 91%] Built target a3m_database_filter-plain make -f src/CMakeFiles/cstranslate-plain.dir/build.make src/CMakeFiles/cstranslate-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/cstranslate-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/cstranslate-plain.dir/build.make src/CMakeFiles/cstranslate-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 92%] Building CXX object src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o" -o cstranslate-plain libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 92%] Built target cstranslate-plain make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o" -o hhblits_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 94%] Built target hhblits_omp-plain make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhsearch_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o" -o hhsearch_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 96%] Built target hhsearch_omp-plain make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhalign_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o" -o hhalign_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 98%] Built target hhalign_omp-plain make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_ca3m-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/14/cstdio:42, from /usr/x86_64-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/x86_64-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/x86_64-linux-gnu/include/c++/14/string:54, from /usr/x86_64-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/14/ios:44, from /usr/x86_64-linux-gnu/include/c++/14/istream:40, from /usr/x86_64-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [100%] Built target hhblits_ca3m-plain make[3]: Leaving directory '/<>/build_plain' /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles 0 make[2]: Leaving directory '/<>/build_plain' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/hhsuite/usr/libexec/hhsuite/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Installing: /<>/debian/tmp/usr/data/context_data.crf -- Installing: /<>/debian/tmp/usr/data/context_data.lib -- Installing: /<>/debian/tmp/usr/data/cs219.lib -- Installing: /<>/debian/tmp/usr/data/do_not_delete -- Installing: /<>/debian/tmp/usr/data/do_not_delete.phr -- Installing: /<>/debian/tmp/usr/data/do_not_delete.pin -- Installing: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx2 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx2 -- Installing: /<>/debian/tmp/usr/scripts/a3m.py -- Installing: /<>/debian/tmp/usr/scripts/addss.pl -- Installing: /<>/debian/tmp/usr/scripts/Align.pm -- Installing: /<>/debian/tmp/usr/scripts/check_a3m.py -- Installing: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Installing: /<>/debian/tmp/usr/scripts/ffindex.py -- Installing: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Installing: /<>/debian/tmp/usr/scripts/hh_reader.py -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Installing: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Installing: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Installing: /<>/debian/tmp/usr/scripts/mergeali.pl -- Installing: /<>/debian/tmp/usr/scripts/multithread.pl -- Installing: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Installing: /<>/debian/tmp/usr/scripts/reformat.pl -- Installing: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Installing: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse4.1 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-ssse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_plain' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_plain' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-plain -- Installing: /<>/debian/tmp/usr/bin/hhmake-plain -- Installing: /<>/debian/tmp/usr/bin/hhfilter-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign-plain -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-plain -- Installing: /<>/debian/tmp/usr/bin/cstranslate-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-plain -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_plain' mkdir -p /<>/debian/hhsuite/usr/bin dh_install -phhsuite debian/bin/simd-dispatch /usr/libexec/hhsuite/ for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter cstranslate ; do dh_install usr/bin/${prog}* /usr/libexec/hhsuite/; done cd /<>/debian/hhsuite/usr/bin \ && for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter; do \ ln -s ../libexec/hhsuite/simd-dispatch ${prog} ; done cd /<>/debian/hhsuite/usr/libexec/hhsuite/bin \ && for prog in cstranslate ; do \ ln -s ../simd-dispatch ${prog} ; done dh_install -phhsuite usr/bin/ffindex_* usr/bin/ make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/hhsuite/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhalign Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/hhsuite/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/hhsuite/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits_omp Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/hhsuite/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhconsensus Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/hhsuite/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhfilter Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/hhsuite/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhmake Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/hhsuite/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhsearch Try `--no-discard-stderr' if option outputs to stderr dh_installman --arch make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-8_amd64.deb'. dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-8_amd64.deb'. dpkg-genbuildinfo --build=any -O../hhsuite_3.3.0+ds-8_amd64.buildinfo dpkg-genchanges --build=any -O../hhsuite_3.3.0+ds-8_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-31T20:31:19Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hhsuite_3.3.0+ds-8_amd64.changes: --------------------------------- Format: 1.8 Date: Sun, 13 Aug 2023 10:47:11 +0200 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 3.3.0+ds-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment Closes: 1037689 Changes: hhsuite (3.3.0+ds-8) unstable; urgency=medium . * Team upload. * gcc-13.patch: new: fix ftbfs with gcc 13. (Closes: #1037689) * d/control: declare compliance to standards version 4.6.2. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Architecture: amd64 Version: 3.3.0+ds-8 Checksums-Md5: 717596b4f7ebf23f85247634bfca0856 124524888 hhsuite-dbgsym_3.3.0+ds-8_amd64.deb fefde197181f4979cdc0d7369fd0e5f9 56303700 hhsuite_3.3.0+ds-8_amd64.deb Checksums-Sha1: fd8aa6078c1d1ab9dc65cd39be487cb33b03442f 124524888 hhsuite-dbgsym_3.3.0+ds-8_amd64.deb e9ada3dd35dc0205f46c6111b51ceedc05218684 56303700 hhsuite_3.3.0+ds-8_amd64.deb Checksums-Sha256: 248aa897032254c4ee598c516e0b76267e435d78fece31ba8898ee9dd24d45bf 124524888 hhsuite-dbgsym_3.3.0+ds-8_amd64.deb 6c88e1b150ceedf4bf9556bbac7673cb84ed42e1aff20ffd16076b8315a5572f 56303700 hhsuite_3.3.0+ds-8_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 31 Oct 2024 20:31:14 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.5), bash (= 5.2.32-1+b2), binutils (= 2.43.1-5), binutils-aarch64-linux-gnu (= 2.43.1-5), binutils-common (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 3.30.5-1), cmake-data (= 3.30.5-1), coreutils (= 9.5-1+b1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-7), cpp-14-aarch64-linux-gnu (= 14.2.0-7), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9+b1), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20+b1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1+b1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-1.1+b1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-7), g++-14-aarch64-linux-gnu (= 14.2.0-7), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-7), gcc-14-aarch64-linux-gnu (= 14.2.0-7), gcc-14-base (= 14.2.0-7), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4+b1), groff-base (= 1.23.0-5), gzip (= 1.12-1.1+b1), help2man (= 1.49.3+b1), hicolor-icon-theme (= 0.18-1), hostname (= 3.25), imagemagick (= 8:7.1.1.39+dfsg1-1), imagemagick-7-common (= 8:7.1.1.39+dfsg1-1), imagemagick-7.q16 (= 8:7.1.1.39+dfsg1-1), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-1), libasan8 (= 14.2.0-7), libatomic1 (= 14.2.0-7), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-2), libaudit1 (= 1:4.0.1-2), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libbrotli1 (= 1.1.0-2+b5), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-3), libcap2 (= 1:2.66-5+b1), libcc1-0 (= 14.2.0-7), libcom-err2 (= 1.47.1-1+b1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libcurl4t64 (= 8.10.1-2), libdav1d7 (= 1.5.0-1+b1), libdb5.3t64 (= 5.3.28+dfsg2-9), libde265-0 (= 1.0.15-1+b2), libdebconfclient0 (= 0.272+b1), libdebhelper-perl (= 13.20), libdeflate0 (= 1.22-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.192-4), libexpat1 (= 2.6.3-2), libffi8 (= 3.4.6-1), libfftw3-double3 (= 3.3.10-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libfontconfig1 (= 2.15.0-1.1+b1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-7), libgcc-s1 (= 14.2.0-7), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libglib2.0-0t64 (= 2.82.2-2), libgmp10 (= 2:6.3.0+dfsg-2+b2), libgnutls30t64 (= 3.8.6-2+b1), libgomp1 (= 14.2.0-7), libgprofng0 (= 2.43.1-5), libgssapi-krb5-2 (= 1.21.3-3), libheif-plugin-dav1d (= 1.18.2-2), libheif-plugin-libde265 (= 1.18.2-2), libheif1 (= 1.18.2-2), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.2.0-7), libicu72 (= 72.1-5+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-7), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-3), libjsoncpp26 (= 1.9.6-2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), liblcms2-2 (= 2.16-2), libldap-2.5-0 (= 2.5.18+dfsg-3+b1), liblerc4 (= 4.0.0+ds-4+b2), liblocale-gettext-perl (= 1.07-7+b1), liblqr-1-0 (= 0.4.2-2.1+b1), liblsan0 (= 14.2.0-7), libltdl7 (= 2.4.7-7+b2), liblz4-1 (= 1.9.4-3+b1), liblzma5 (= 5.6.3-1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmagickcore-7.q16-10 (= 8:7.1.1.39+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.1.39+dfsg1-1), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.64.0-1), libopenjp2-7 (= 2.5.0-2+b3), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libpng16-16t64 (= 1.6.44-2), libproc2-0 (= 2:4.0.4-6), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14.2.0-7), libraw23t64 (= 0.21.3-1), librhash1 (= 1.4.5-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-8), libsasl2-modules-db (= 2.1.28+dfsg1-8), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsharpyuv0 (= 1.4.0-0.1), libsimde-dev (= 0.8.2-1), libsmartcols1 (= 2.40.2-9), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.3.2-2), libstdc++-14-dev (= 14.2.0-7), libstdc++6 (= 14.2.0-7), libsystemd0 (= 256.7-2), libtasn1-6 (= 4.19.0-3+b2), libtiff6 (= 4.5.1+git230720-5), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-7), libubsan1 (= 14.2.0-7), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libuv1t64 (= 1.48.0-6), libwebp7 (= 1.4.0-0.1), libwebpdemux2 (= 1.4.0-0.1), libwebpmux3 (= 1.4.0-0.1), libx11-6 (= 2:1.8.7-1+b1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1+b1), libxcb1 (= 1.17.0-2), libxdmcp6 (= 1:1.1.2-3+b1), libxext6 (= 2:1.3.4-1+b2), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.5-1), m4 (= 1.4.19-4), make (= 4.3-4.1+b1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-2), patch (= 2.7.6-7+b1), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-6), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.11-1), tar (= 1.35+dfsg-3), util-linux (= 2.40.2-9), xz-utils (= 5.6.3-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1691916431" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hhsuite-dbgsym_3.3.0+ds-8_amd64.deb ----------------------------------- new Debian package, version 2.0. size 124524888 bytes: control archive=5220 bytes. 4643 bytes, 12 lines control 11214 bytes, 106 lines md5sums Package: hhsuite-dbgsym Source: hhsuite Version: 3.3.0+ds-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 127698 Depends: hhsuite (= 3.3.0+ds-8) Section: debug Priority: optional Description: debug symbols for hhsuite Build-Ids: 013bf0a1c6843a9039507656bd3f735bf4b5c54a 01d66bd8d061330aa452be2da866f565928e730d 046268c794c5342cf2b882342cf3b6da7dd05a8e 089f7f009dab9dee31edc86246834eb397914024 09309a5de3f7c67bdd3c723e3983a32c3c03c7aa 0bf23bf0a9e09e86d2087fee26ee25e366b0a833 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drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 26136 2023-08-13 08:47 ./usr/lib/debug/.build-id/fb/27fc6f6371c9e52ec07f900e23a08a6b677179.debug -rw-r--r-- root/root 667456 2023-08-13 08:47 ./usr/lib/debug/.build-id/fb/7f111995c71339cdb8609d80c5a4d15db75c9b.debug -rw-r--r-- root/root 898688 2023-08-13 08:47 ./usr/lib/debug/.build-id/fb/e63dd04a78a4e7c2d6a5ba1aded86388d3e204.debug drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 873944 2023-08-13 08:47 ./usr/lib/debug/.dwz/x86_64-linux-gnu/hhsuite.debug drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/share/doc/hhsuite-dbgsym -> hhsuite hhsuite_3.3.0+ds-8_amd64.deb ---------------------------- new Debian package, version 2.0. size 56303700 bytes: control archive=4480 bytes. 1472 bytes, 29 lines control 10398 bytes, 146 lines md5sums Package: hhsuite Version: 3.3.0+ds-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 467511 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 14), perl:any, hhsuite-data (= 3.3.0+ds-8), python3 Conflicts: ffindex Built-Using: simde (= 0.8.2-1) Section: science Priority: optional Homepage: https://toolkit.tuebingen.mpg.de/ Description: sensitive protein sequence searching based on HMM-HMM alignment HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). . This package contains HHsearch and HHblits among other programs and utilities. . HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling. . HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments. drwxr-xr-x root/root 0 2023-08-13 08:47 ./ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/bin/ lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/a3m_database_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/a3m_database_filter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/a3m_database_reduce -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/a3m_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/a3m_reduce -> ../libexec/hhsuite/simd-dispatch -rwxr-xr-x root/root 31216 2023-08-13 08:47 ./usr/bin/ffindex_apply -rwxr-xr-x root/root 31280 2023-08-13 08:47 ./usr/bin/ffindex_build -rwxr-xr-x root/root 27056 2023-08-13 08:47 ./usr/bin/ffindex_from_fasta -rwxr-xr-x root/root 31040 2023-08-13 08:47 ./usr/bin/ffindex_from_fasta_with_split -rwxr-xr-x root/root 27024 2023-08-13 08:47 ./usr/bin/ffindex_get -rwxr-xr-x root/root 27120 2023-08-13 08:47 ./usr/bin/ffindex_modify -rwxr-xr-x root/root 22848 2023-08-13 08:47 ./usr/bin/ffindex_order -rwxr-xr-x root/root 22848 2023-08-13 08:47 ./usr/bin/ffindex_reduce -rwxr-xr-x root/root 22848 2023-08-13 08:47 ./usr/bin/ffindex_unpack lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhalign -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhalign_omp -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhblits -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhblits_ca3m -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhblits_omp -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhconsensus -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhfilter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhmake -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhsearch -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/bin/hhsearch_omp -> ../libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/ lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/lib/hh -> hhsuite drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/data/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete -rw-r--r-- root/root 135 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.phr -rw-r--r-- root/root 112 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.pin -rw-r--r-- root/root 433 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.psq lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/scripts -> ../../share/hhsuite/scripts drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/libexec/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/libexec/hhsuite/ -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-avx -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-avx2 -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-plain -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-sse3 -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-sse4.1 -rwxr-xr-x root/root 51688 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_extract-ssse3 -rwxr-xr-x root/root 59880 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_filter-avx -rwxr-xr-x root/root 59880 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_filter-avx2 -rwxr-xr-x root/root 59880 2023-08-13 08:47 ./usr/libexec/hhsuite/a3m_database_filter-plain -rwxr-xr-x root/root 59880 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8190456 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-avx -rwxr-xr-x root/root 8178168 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-avx2 -rwxr-xr-x root/root 8190456 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-plain -rwxr-xr-x root/root 8190456 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-sse3 -rwxr-xr-x root/root 8186360 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-sse4.1 -rwxr-xr-x root/root 8190456 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_ca3m-ssse3 -rwxr-xr-x root/root 8190456 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-avx -rwxr-xr-x root/root 8182264 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-avx2 -rwxr-xr-x root/root 8186360 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-plain -rwxr-xr-x root/root 8186360 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-sse3 -rwxr-xr-x root/root 8182264 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-sse4.1 -rwxr-xr-x root/root 8186360 2023-08-13 08:47 ./usr/libexec/hhsuite/hhblits_omp-ssse3 -rwxr-xr-x root/root 7645688 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-avx -rwxr-xr-x root/root 7649784 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-avx2 -rwxr-xr-x root/root 7641592 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-plain -rwxr-xr-x root/root 7641592 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-sse3 -rwxr-xr-x root/root 7641592 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-sse4.1 -rwxr-xr-x root/root 7641592 2023-08-13 08:47 ./usr/libexec/hhsuite/hhconsensus-ssse3 -rwxr-xr-x root/root 362992 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-avx -rwxr-xr-x root/root 367088 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-avx2 -rwxr-xr-x root/root 358896 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-plain -rwxr-xr-x root/root 358896 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-sse3 -rwxr-xr-x root/root 358896 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-sse4.1 -rwxr-xr-x root/root 358896 2023-08-13 08:47 ./usr/libexec/hhsuite/hhfilter-ssse3 -rwxr-xr-x root/root 7625208 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-avx -rwxr-xr-x root/root 7625208 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-avx2 -rwxr-xr-x root/root 7617016 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-plain -rwxr-xr-x root/root 7617016 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-sse3 -rwxr-xr-x root/root 7617016 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-sse4.1 -rwxr-xr-x root/root 7617016 2023-08-13 08:47 ./usr/libexec/hhsuite/hhmake-ssse3 -rwxr-xr-x root/root 8223224 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-avx -rwxr-xr-x root/root 8210936 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-avx2 -rwxr-xr-x root/root 8223224 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-plain -rwxr-xr-x root/root 8223224 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-sse3 -rwxr-xr-x root/root 8219128 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-sse4.1 -rwxr-xr-x root/root 8223224 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch-ssse3 -rwxr-xr-x root/root 8231416 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-avx -rwxr-xr-x root/root 8223224 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-avx2 -rwxr-xr-x root/root 8231416 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-plain -rwxr-xr-x root/root 8231416 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-sse3 -rwxr-xr-x root/root 8227320 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-sse4.1 -rwxr-xr-x root/root 8231416 2023-08-13 08:47 ./usr/libexec/hhsuite/hhsearch_omp-ssse3 -rwxr-xr-x root/root 453 2023-08-13 08:47 ./usr/libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/hhsuite/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/share/doc/hhsuite/README.md.gz -rw-r--r-- root/root 1841 2023-08-13 08:47 ./usr/share/doc/hhsuite/changelog.Debian.gz -rw-r--r-- root/root 20399 2023-08-13 08:47 ./usr/share/doc/hhsuite/copyright drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/hhsuite/examples/ -rw-r--r-- root/root 32126 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.a3m -rw-r--r-- root/root 57578 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhm -rw-r--r-- root/root 181765 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhr -rw-r--r-- root/root 506 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.seq drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/hhsuite/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/hhsuite/scripts/ -rw-r--r-- root/root 24577 2020-08-16 23:16 ./usr/share/hhsuite/scripts/Align.pm -rw-r--r-- root/root 4710 2020-08-16 23:16 ./usr/share/hhsuite/scripts/HHPaths.pm -rwxr-xr-x root/root 8021 2023-08-13 08:47 ./usr/share/hhsuite/scripts/a3m.py -rwxr-xr-x root/root 31681 2023-08-13 08:47 ./usr/share/hhsuite/scripts/addss.pl -rwxr-xr-x root/root 438 2023-08-13 08:47 ./usr/share/hhsuite/scripts/check_a3m.py -rwxr-xr-x root/root 28735 2023-08-13 08:47 ./usr/share/hhsuite/scripts/cif2fasta.py -rwxr-xr-x root/root 4654 2023-08-13 08:47 ./usr/share/hhsuite/scripts/create_profile_from_hhm.pl -rwxr-xr-x root/root 6815 2023-08-13 08:47 ./usr/share/hhsuite/scripts/create_profile_from_hmmer.pl -rwxr-xr-x root/root 2081 2023-08-13 08:47 ./usr/share/hhsuite/scripts/ffindex.py -rwxr-xr-x root/root 446 2023-08-13 08:47 ./usr/share/hhsuite/scripts/get_a3m_size.py -rwxr-xr-x root/root 7179 2023-08-13 08:47 ./usr/share/hhsuite/scripts/hh_reader.py -rwxr-xr-x root/root 48079 2023-08-13 08:47 ./usr/share/hhsuite/scripts/hhmakemodel.pl -rwxr-xr-x root/root 87343 2023-08-13 08:47 ./usr/share/hhsuite/scripts/hhmakemodel.py -rwxr-xr-x root/root 16961 2023-08-13 08:47 ./usr/share/hhsuite/scripts/hhsuitedb.py -rwxr-xr-x root/root 20214 2020-08-16 23:16 ./usr/share/hhsuite/scripts/mergeali.pl -rwxr-xr-x root/root 5717 2023-08-13 08:47 ./usr/share/hhsuite/scripts/multithread.pl -rwxr-xr-x root/root 40490 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdb2fasta.pl -rwxr-xr-x root/root 13183 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdbfilter.pl -rwxr-xr-x root/root 8648 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdbfilter.py -rwxr-xr-x root/root 28328 2020-08-16 23:16 ./usr/share/hhsuite/scripts/reformat.pl -rwxr-xr-x root/root 14019 2023-08-13 08:47 ./usr/share/hhsuite/scripts/renumberpdb.pl -rwxr-xr-x root/root 3651 2023-08-13 08:47 ./usr/share/hhsuite/scripts/splitfasta.pl drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/man/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhalign.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhblits.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhblits_omp.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhconsensus.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhfilter.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhmake.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhsearch.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1340 B] Get:5 copy:/<>/apt_archive ./ Packages [1419 B] Fetched 3374 B in 0s (183 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 shared-mime-info t1utils ucf unzip 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 15.4 MB of archives. After this operation, 68.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b1 [755 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.10.1-2 [328 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 2.2.0-4+b1 [112 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.21-1 [59.1 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.0.3-1+b1 [208 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.0.3-1+b1 [467 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1+b1 [32.6 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.45-1 [114 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-1 [852 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.45-1 [480 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.17.0-1 [3055 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b6 [63.8 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:34 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-1 [115 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.66-1 [217 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:43 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b4 [34.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:53 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.38-1+b1 [127 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b4 [31.2 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b4 [97.7 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1+b1 [24.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:90 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3 [48.9 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b3 [41.7 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:126 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.46-1+b1 [63.6 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.30-1+b1 [27.1 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:130 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b3 [13.1 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b3 [20.1 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.902.0+ds-2+b1 [33.9 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-2 [58.9 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.119.0 [1056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.4 MB in 0s (53.5 MB/s) Selecting previously unselected package netbase. (Reading database ... 24142 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../005-shared-mime-info_2.4-5+b1_arm64.deb ... Unpacking shared-mime-info (2.4-5+b1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../006-libnghttp3-9_1.4.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.4.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../007-libngtcp2-16_1.6.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../008-libngtcp2-crypto-gnutls8_1.6.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../009-libcurl3t64-gnutls_8.10.1-2_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.10.1-2) ... Selecting previously unselected package libstemmer0d:arm64. Preparing to unpack .../010-libstemmer0d_2.2.0-4+b1_arm64.deb ... Unpacking libstemmer0d:arm64 (2.2.0-4+b1) ... Selecting previously unselected package libxmlb2:arm64. 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Preparing to unpack .../017-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../018-gpgconf_2.2.45-1_arm64.deb ... Unpacking gpgconf (2.2.45-1) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../019-libsqlite3-0_3.46.1-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.46.1-1) ... Selecting previously unselected package gpg. Preparing to unpack .../020-gpg_2.2.45-1_arm64.deb ... Unpacking gpg (2.2.45-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../021-iso-codes_4.17.0-1_all.deb ... Unpacking iso-codes (4.17.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../022-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../023-libapt-pkg-perl_0.1.40+b6_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40+b6) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../024-libb-hooks-op-check-perl_0.22-3+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../025-libdynaloader-functions-perl_0.004-1_all.deb ... Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../026-libdevel-callchecker-perl_0.009-1+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../027-libparams-classify-perl_0.015-2+b4_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../028-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../029-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../030-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../032-libvariable-magic-perl_0.64-1+b1_arm64.deb ... Unpacking libvariable-magic-perl (0.64-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../033-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../034-libberkeleydb-perl_0.66-1_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.66-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../035-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../036-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../037-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../038-libhtml-parser-perl_3.83-1+b1_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.83-1+b1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../039-libcgi-pm-perl_4.66-1_all.deb ... Unpacking libcgi-pm-perl (4.66-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../040-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../041-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../042-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../043-libclass-xsaccessor-perl_1.19-4+b4_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b4) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../044-libclone-perl_0.47-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.47-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../045-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../046-libparams-util-perl_1.102-3+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../047-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../048-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../049-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../050-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../051-libcpanel-json-xs-perl_4.38-1+b1_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.38-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../145-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b6) ... Setting up liblz1:arm64 (1.15~pre2-1) ... Setting up libberkeleydb-perl:arm64 (0.66-1) ... Setting up plzip (1.11-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.38-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxmlb2:arm64 (0.3.21-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-28+b1) ... Setting up libsqlite3-0:arm64 (3.46.1-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.902.0+ds-2+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up liblzo2-2:arm64 (2.10-3) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1+b1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b4) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4+b1) ... Setting up shared-mime-info (2.4-5+b1) ... Setting up diffstat (1.66-1+b1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b1) ... Setting up libnghttp3-9:arm64 (1.4.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b3) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2+b1) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libstemmer0d:arm64 (2.2.0-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.3.2-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-5) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libcurl3t64-gnutls:arm64 (8.10.1-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b3) ... Setting up libappstream5:arm64 (1.0.3-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.46-1+b1) ... Setting up appstream (1.0.3-1+b1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up gpgconf (2.2.45-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.119.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 3668296 Build-Time: 4422 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 56 Job: hhsuite_3.3.0+ds-8 Lintian: pass Machine Architecture: arm64 Package: hhsuite Package-Time: 4521 Source-Version: 3.3.0+ds-8 Space: 3668296 Status: successful Version: 3.3.0+ds-8 -------------------------------------------------------------------------------- Finished at 2024-10-31T20:31:19Z Build needed 01:15:21, 3668296k disk space