sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | hhsuite 3.3.0+ds-8 (s390x) Mon, 14 Oct 2024 04:44:41 +0000 | +==============================================================================+ Package: hhsuite Version: 3.3.0+ds-8 Source Version: 3.3.0+ds-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-09777e5a-82c7-4519-8495-3ba0ed4bc85d' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-xlIa1q/resolver-lX2l8L' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [202 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-14-0204.32-F-2024-10-14-0204.32.pdiff [16.1 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-14-0204.32-F-2024-10-14-0204.32.pdiff [15.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-14-0204.32-F-2024-10-14-0204.32.pdiff [16.1 kB] Get:6 http://localhost:3142/debian sid/main s390x Packages [9595 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-14-0204.32-F-2024-10-14-0204.32.pdiff [15.8 kB] Fetched 9957 kB in 2s (5196 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4794 kB of source archives. Get:1 http://localhost:3142/debian sid/main hhsuite 3.3.0+ds-8 (dsc) [2271 B] Get:2 http://localhost:3142/debian sid/main hhsuite 3.3.0+ds-8 (tar) [4775 kB] Get:3 http://localhost:3142/debian sid/main hhsuite 3.3.0+ds-8 (diff) [16.9 kB] Fetched 4794 kB in 1s (6662 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hhsuite-xlIa1q/hhsuite-3.3.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-xlIa1q' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [801 B] Fetched 2168 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cmake cmake-data cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2 libcrypt-dev:s390x libcrypt1:s390x libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0t64 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libicu72 libitm1:s390x libitm1-s390x-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1t64 libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libncursesw6 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtiff6 libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 linux-libc-dev-s390x-cross m4 man-db po-debconf procps sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff imagemagick-6-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig libraw-bin xdg-utils lrzip glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x libfftw3-bin libfftw3-dev low-memory-monitor krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-6.q16-7-extra libstdc++-14-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libmagickcore-6.q16-7-extra ghostscript netpbm libidn2-0:s390x ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cmake cmake-data cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc-14-base:s390x gcc-14-cross-base gcc-14-s390x-linux-gnu gcc-14-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1 libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2 libcrypt-dev:s390x libcrypt1:s390x libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-14-dev:s390x libgcc-14-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0t64 libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libicu72 libitm1:s390x libitm1-s390x-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1t64 libmagickcore-6.q16-7t64 libmagickwand-6.q16-7t64 libncursesw6 libnghttp2-14 libopenjp2-7 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-14-dev:s390x libstdc++-14-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtiff6 libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 linux-libc-dev-s390x-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:s390x sensible-utils 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After this operation, 444 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 libfftw3-double3 amd64 3.3.10-1+b3 [780 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get:5 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:6 http://localhost:3142/debian sid/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get:7 http://localhost:3142/debian sid/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:8 http://localhost:3142/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:9 http://localhost:3142/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:10 http://localhost:3142/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:11 http://localhost:3142/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:12 http://localhost:3142/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:13 http://localhost:3142/debian sid/main amd64 libdav1d7 amd64 1.4.3-1 [551 kB] Get:14 http://localhost:3142/debian sid/main amd64 libheif-plugin-dav1d amd64 1.18.2-2 [10.9 kB] Get:15 http://localhost:3142/debian sid/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB] Get:16 http://localhost:3142/debian sid/main amd64 libheif-plugin-libde265 amd64 1.18.2-2 [14.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 libheif1 amd64 1.18.2-2 [312 kB] Get:18 http://localhost:3142/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:19 http://localhost:3142/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:20 http://localhost:3142/debian sid/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:21 http://localhost:3142/debian sid/main amd64 libglib2.0-0t64 amd64 2.82.1-1 [1499 kB] Get:22 http://localhost:3142/debian sid/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b1 [29.2 kB] Get:23 http://localhost:3142/debian sid/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get:24 http://localhost:3142/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:25 http://localhost:3142/debian sid/main amd64 libraw23t64 amd64 0.21.2-2.1 [388 kB] Get:26 http://localhost:3142/debian sid/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get:27 http://localhost:3142/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:28 http://localhost:3142/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:29 http://localhost:3142/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get:30 http://localhost:3142/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get:31 http://localhost:3142/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:32 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:33 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:34 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:35 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:36 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:37 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:39 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get:40 http://localhost:3142/debian sid/main amd64 imagemagick-6-common all 8:6.9.13.12+dfsg1-1 [67.3 kB] Get:41 http://localhost:3142/debian sid/main amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [1710 kB] Get:42 http://localhost:3142/debian sid/main amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.13.12+dfsg1-1 [311 kB] Get:43 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:44 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:46 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:48 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:49 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:51 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:52 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:53 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get:54 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:56 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:57 http://localhost:3142/debian sid/main amd64 autoconf all 2.72-3 [493 kB] Get:58 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:60 http://localhost:3142/debian sid/main amd64 autopoint all 0.22.5-2 [723 kB] Get:61 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.43.1-5 [2502 kB] Get:62 http://localhost:3142/debian sid/main amd64 cmake-data all 3.30.5-1 [2223 kB] Get:63 http://localhost:3142/debian sid/main amd64 libarchive13t64 amd64 3.7.4-1 [349 kB] Get:64 http://localhost:3142/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:65 http://localhost:3142/debian sid/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:68 http://localhost:3142/debian sid/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:69 http://localhost:3142/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:70 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:71 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:72 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get:73 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.63.0-1 [74.8 kB] Get:74 http://localhost:3142/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:76 http://localhost:3142/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get:77 http://localhost:3142/debian sid/main amd64 libcurl4t64 amd64 8.10.1-2 [352 kB] Get:78 http://localhost:3142/debian sid/main amd64 libjsoncpp26 amd64 1.9.6-2 [81.6 kB] Get:79 http://localhost:3142/debian sid/main amd64 librhash1 amd64 1.4.4-3 [131 kB] Get:80 http://localhost:3142/debian sid/main amd64 libuv1t64 amd64 1.48.0-6 [148 kB] Get:81 http://localhost:3142/debian sid/main amd64 cmake amd64 3.30.5-1 [11.4 MB] Get:82 http://localhost:3142/debian sid/main amd64 gcc-14-s390x-linux-gnu-base amd64 14.2.0-6cross1 [46.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 cpp-14-s390x-linux-gnu amd64 14.2.0-6cross1 [9404 kB] Get:84 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:14.2.0-1 [4848 B] Get:85 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:86 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.40-3cross1 [1139 kB] Get:87 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 14.2.0-6cross1 [31.9 kB] Get:88 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 14.2.0-6cross1 [129 kB] Get:89 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 14.2.0-6cross1 [26.4 kB] Get:90 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 14.2.0-6cross1 [8272 B] Get:91 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 14.2.0-6cross1 [2564 kB] Get:92 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 14.2.0-6cross1 [715 kB] Get:93 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 14.2.0-6cross1 [1055 kB] Get:94 http://localhost:3142/debian sid/main amd64 libgcc-14-dev-s390x-cross all 14.2.0-6cross1 [877 kB] Get:95 http://localhost:3142/debian sid/main amd64 gcc-14-s390x-linux-gnu amd64 14.2.0-6cross1 [17.8 MB] Get:96 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:14.2.0-1 [1448 B] Get:97 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 6.11.2-1cross1 [2262 kB] Get:98 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.40-3cross1 [1521 kB] Get:99 http://localhost:3142/debian sid/main amd64 libstdc++-14-dev-s390x-cross all 14.2.0-6cross1 [2377 kB] Get:100 http://localhost:3142/debian sid/main amd64 g++-14-s390x-linux-gnu amd64 14.2.0-6cross1 [10.4 MB] Get:101 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:102 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:103 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:104 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:105 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:107 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:108 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:109 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:110 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:111 http://localhost:3142/debian sid/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:112 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:113 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:114 http://localhost:3142/debian sid/main amd64 debhelper all 13.20 [915 kB] Get:115 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:117 http://localhost:3142/debian sid/main s390x gcc-14-base s390x 14.2.0-6 [46.7 kB] Get:118 http://localhost:3142/debian sid/main amd64 help2man amd64 1.49.3 [198 kB] Get:119 http://localhost:3142/debian sid/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get:120 http://localhost:3142/debian sid/main amd64 imagemagick-6.q16 amd64 8:6.9.13.12+dfsg1-1 [290 kB] Get:121 http://localhost:3142/debian sid/main amd64 imagemagick amd64 8:6.9.13.12+dfsg1-1 [19.6 kB] Get:122 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 14.2.0-6 [31.9 kB] Get:123 http://localhost:3142/debian sid/main s390x libc6 s390x 2.40-3 [2410 kB] Get:124 http://localhost:3142/debian sid/main s390x libasan8 s390x 14.2.0-6 [2572 kB] Get:125 http://localhost:3142/debian sid/main s390x libatomic1 s390x 14.2.0-6 [8580 B] Get:126 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.36-5 [93.9 kB] Get:127 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.36-5 [122 kB] Get:128 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.40-3 [1526 kB] Get:129 http://localhost:3142/debian sid/main s390x libgomp1 s390x 14.2.0-6 [132 kB] Get:130 http://localhost:3142/debian sid/main s390x libitm1 s390x 14.2.0-6 [26.9 kB] Get:131 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 14.2.0-6 [763 kB] Get:132 http://localhost:3142/debian sid/main s390x libubsan1 s390x 14.2.0-6 [1056 kB] Get:133 http://localhost:3142/debian sid/main s390x libgcc-14-dev s390x 14.2.0-6 [877 kB] Get:134 http://localhost:3142/debian sid/main amd64 libsimde-dev all 0.8.2-1 [465 kB] Get:135 http://localhost:3142/debian sid/main s390x libstdc++-14-dev s390x 14.2.0-6 [2399 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 115 MB in 1s (177 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up imagemagick-6-common (8:6.9.13.12+dfsg1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up binutils-s390x-linux-gnu (2.43.1-5) ... Setting up gcc-14-s390x-linux-gnu-base:amd64 (14.2.0-6cross1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up hicolor-icon-theme (0.18-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up gcc-14-base:s390x (14.2.0-6) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b4) ... Setting up libc6-s390x-cross (2.40-3cross1) ... Setting up libuv1t64:amd64 (1.48.0-6) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.63.0-1) ... Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (6.11.2-1cross1) ... Setting up libglib2.0-0t64:amd64 (2.82.1-1) ... No schema files found: doing nothing. Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libjsoncpp26:amd64 (1.9.6-2) ... Setting up libproc2-0:amd64 (2:4.0.4-6) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgcc-s1-s390x-cross (14.2.0-6cross1) ... Setting up libncursesw6:amd64 (6.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libltdl7:amd64 (2.4.7-7+b1) ... Setting up libfftw3-double3:amd64 (3.3.10-1+b3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up cpp-14-s390x-linux-gnu (14.2.0-6cross1) ... Setting up libraw23t64:amd64 (0.21.2-2.1) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libitm1-s390x-cross (14.2.0-6cross1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:amd64 (1.4.3-1) ... Setting up liblqr-1-0:amd64 (0.4.2-2.1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libc6-dev-s390x-cross (2.40-3cross1) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-6) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:amd64 (1.4.4-3) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up libde265-0:amd64 (1.0.15-1+b2) ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up libgomp1-s390x-cross (14.2.0-6cross1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up cpp-s390x-linux-gnu (4:14.2.0-1) ... Setting up libtool (2.4.7-7) ... Setting up libstdc++6-s390x-cross (14.2.0-6cross1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libatomic1-s390x-cross (14.2.0-6cross1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up libasan8-s390x-cross (14.2.0-6cross1) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libarchive13t64:amd64 (3.7.4-1) ... Setting up libubsan1-s390x-cross (14.2.0-6cross1) ... Setting up libcurl4t64:amd64 (8.10.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-s390x-cross (14.2.0-6cross1) ... Setting up cmake (3.30.5-1) ... Setting up debhelper (13.20) ... Setting up gcc-14-s390x-linux-gnu (14.2.0-6cross1) ... Setting up gcc-s390x-linux-gnu (4:14.2.0-1) ... Setting up libstdc++-14-dev-s390x-cross (14.2.0-6cross1) ... Setting up g++-14-s390x-linux-gnu (14.2.0-6cross1) ... Setting up g++-s390x-linux-gnu (4:14.2.0-1) ... Setting up crossbuild-essential-s390x (12.12) ... Setting up libgcc-s1:s390x (14.2.0-6) ... Setting up libc6:s390x (2.40-3) ... Setting up libasan8:s390x (14.2.0-6) ... Setting up libheif-plugin-dav1d:amd64 (1.18.2-2) ... Setting up libstdc++6:s390x (14.2.0-6) ... Setting up libitm1:s390x (14.2.0-6) ... Setting up libheif-plugin-libde265:amd64 (1.18.2-2) ... Setting up libheif1:amd64 (1.18.2-2) ... Setting up libmagickcore-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... Setting up libcrypt1:s390x (1:4.4.36-5) ... Setting up libgomp1:s390x (14.2.0-6) ... Setting up libmagickwand-6.q16-7t64:amd64 (8:6.9.13.12+dfsg1-1) ... Setting up libatomic1:s390x (14.2.0-6) ... Setting up libubsan1:s390x (14.2.0-6) ... Setting up imagemagick-6.q16 (8:6.9.13.12+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up libcrypt-dev:s390x (1:4.4.36-5) ... Setting up libc6-dev:s390x (2.40-3) ... Setting up libgcc-14-dev:s390x (14.2.0-6) ... Setting up libstdc++-14-dev:s390x (14.2.0-6) ... Setting up imagemagick (8:6.9.13.12+dfsg1-1) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-s390x-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-s390x-cross_14.2.0-6cross1 linux-libc-dev_6.11.2-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 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source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hhsuite Binary: hhsuite, hhsuite-data Architecture: any all Version: 3.3.0+ds-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Sascha Steinbiss Homepage: https://toolkit.tuebingen.mpg.de/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man Package-List: hhsuite deb science optional arch=any hhsuite-data deb science optional arch=all Checksums-Sha1: d90462ba593366296d8916e184b42325caa4201b 4775072 hhsuite_3.3.0+ds.orig.tar.xz 0c6aa80d717ee79df31a05f33d2f461b1b6f0c88 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Checksums-Sha256: a81037f2e2a4801f1a42f5aa5939334fe038053d05ceabdc0899fefb8cc00a44 4775072 hhsuite_3.3.0+ds.orig.tar.xz d408a3d42581737068f06b96cd922c462f672beeb4faf94f41ac37340170b3cb 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Files: d01293f2b8337f9b914b30976c2a87e9 4775072 hhsuite_3.3.0+ds.orig.tar.xz 81b05abfd099550bfb153063e218961e 16868 hhsuite_3.3.0+ds-8.debian.tar.xz Dgit: 140af672217dfdd27cb9e04f647e16721cab7092 debian archive/debian/3.3.0+ds-8 https://git.dgit.debian.org/hhsuite -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTYqGkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoEMA/+LuZTmLibgbYZApaOGZdaX+PkhrsA zfcKaSk3+e/HPlWNU154xxOVy+O+Y5pCo/EknRdiMEmQPW4Xp5CJOKEFkJE98rpu zorYV6MrnGZbtce76kYae9bIOO7ufuZgOmJQmC8o4Br1ARVzcdb0CoeT/I/YlUaO 1GeZ7FRxPV5+2FnJepnZtN3pVs9flLqfmjkTUpuXunVczXQ/9OqQDHLl+9FRuW9l G/rWE7wu1PZC12UYSIOaCP5ZLWBdD8aTCrD787zdv7NEdhH19LJmrpNiaV9pUmbn 1gWsCwnOkTJPw49XsA6PmabKG3eigVh/vX9OPCyUIFlwsgWk1j59a6iuRdVfKKec tu6iS43HxaDNpmr9RDMPwRy0IJyzFVVfefcFEkiq81xvXWeCyZaIMZG1jiprbitC n17iBZeZbuSNpVfwA8afeBsxfEQF5mMa14pv0b1tYMxFySu578muNQulSbVHRyIm 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dpkg-source: info: applying ppc64el.patch dpkg-source: info: applying exe_suffix dpkg-source: info: applying gcc-13.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.OO5jJyaOW2/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-09777e5a-82c7-4519-8495-3ba0ed4bc85d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.3.0+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure --builddirectory mybuild -- -DNATIVE_ARCH=0 cd mybuild && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/s390x-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DBUILD_TESTING:BOOL=OFF -DNATIVE_ARCH=0 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/mybuild make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build --builddirectory mybuild cd mybuild && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/mybuild' /usr/bin/cmake -S/<> -B/<>/mybuild --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/mybuild/CMakeFiles /<>/mybuild//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/mybuild' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/s390x-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/mybuild' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/mybuild' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/mybuild' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/mybuild' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/mybuild' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/mybuild' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/mybuild' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/mybuild' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/mybuild /<>/mybuild/lib/ffindex/src /<>/mybuild/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/mybuild' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/mybuild/lib/ffindex/src && /usr/bin/s390x-linux-gnu-gcc -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/mybuild/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/mybuild' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/mybuild /<>/mybuild/data /<>/mybuild/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/mybuild' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/mybuild/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/mybuild/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/mybuild/generated/context_data.crf.h > /<>/mybuild/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/mybuild/generated/context_data.crf.h.tmp /<>/mybuild/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/mybuild/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/mybuild/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/mybuild/generated/context_data.lib.h > /<>/mybuild/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/mybuild/generated/context_data.lib.h.tmp /<>/mybuild/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/mybuild/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/mybuild/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/mybuild/generated/cs219.lib.h > /<>/mybuild/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/mybuild/generated/cs219.lib.h.tmp /<>/mybuild/generated/cs219.lib.h make[4]: Leaving directory '/<>/mybuild' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/mybuild' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/mybuild/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/s390x-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/mybuild' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/mybuild' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/mybuild/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/s390x-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/mybuild' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/mybuild/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/s390x-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/mybuild /<>/mybuild/src/cs /<>/mybuild/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/mybuild' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/mybuild/src/cs && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/mybuild/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/mybuild/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/s390x-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/mybuild' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/mybuild' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/s390x-linux-gnu/include/c++/14/cstdio:42, from /usr/s390x-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/s390x-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/s390x-linux-gnu/include/c++/14/string:54, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/istream:40, from /usr/s390x-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/s390x-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/mybuild/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/s390x-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/mybuild' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits.dir/build.make src/CMakeFiles/hhblits.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhblits.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhblits.dir/build.make src/CMakeFiles/hhblits.dir/build make[4]: Entering directory '/<>/mybuild' [ 69%] Building CXX object src/CMakeFiles/hhblits.dir/hhblits_app.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits.dir/hhblits_app.cpp.o -o hhblits libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 70%] Built target hhblits make -f src/CMakeFiles/hhmake.dir/build.make src/CMakeFiles/hhmake.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhmake.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhmake.dir/build.make src/CMakeFiles/hhmake.dir/build make[4]: Entering directory '/<>/mybuild' [ 71%] Building CXX object src/CMakeFiles/hhmake.dir/hhmake.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake.dir/hhmake.cpp.o -MF CMakeFiles/hhmake.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhmake.dir/hhmake.cpp.o -o hhmake libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 72%] Built target hhmake make -f src/CMakeFiles/hhfilter.dir/build.make src/CMakeFiles/hhfilter.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhfilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhfilter.dir/build.make src/CMakeFiles/hhfilter.dir/build make[4]: Entering directory '/<>/mybuild' [ 73%] Building CXX object src/CMakeFiles/hhfilter.dir/hhfilter.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhfilter.dir/hhfilter.cpp.o -o hhfilter libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 74%] Built target hhfilter make -f src/CMakeFiles/hhsearch.dir/build.make src/CMakeFiles/hhsearch.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhsearch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhsearch.dir/build.make src/CMakeFiles/hhsearch.dir/build make[4]: Entering directory '/<>/mybuild' [ 75%] Building CXX object src/CMakeFiles/hhsearch.dir/hhblits_app.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch.dir/hhblits_app.cpp.o -o hhsearch libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 76%] Built target hhsearch make -f src/CMakeFiles/hhalign.dir/build.make src/CMakeFiles/hhalign.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhalign.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhalign.dir/build.make src/CMakeFiles/hhalign.dir/build make[4]: Entering directory '/<>/mybuild' [ 77%] Building CXX object src/CMakeFiles/hhalign.dir/hhblits_app.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign.dir/hhblits_app.cpp.o -o hhalign libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 78%] Built target hhalign make -f src/CMakeFiles/hhconsensus.dir/build.make src/CMakeFiles/hhconsensus.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhconsensus.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhconsensus.dir/build.make src/CMakeFiles/hhconsensus.dir/build make[4]: Entering directory '/<>/mybuild' [ 79%] Building CXX object src/CMakeFiles/hhconsensus.dir/hhconsensus.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhconsensus.dir/hhconsensus.cpp.o -o hhconsensus libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 80%] Built target hhconsensus make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/mybuild' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/s390x-linux-gnu/include/c++/14/string:49, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/ostream:40, from /usr/s390x-linux-gnu/include/c++/14/iostream:41, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/s390x-linux-gnu/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/mybuild/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/s390x-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract.dir/build.make src/CMakeFiles/a3m_extract.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/a3m_extract.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/a3m_extract.dir/build.make src/CMakeFiles/a3m_extract.dir/build make[4]: Entering directory '/<>/mybuild' [ 82%] Building CXX object src/CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_extract.dir/a3m_extract.cpp.o -o a3m_extract ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 83%] Built target a3m_extract make -f src/CMakeFiles/a3m_reduce.dir/build.make src/CMakeFiles/a3m_reduce.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/a3m_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/a3m_reduce.dir/build.make src/CMakeFiles/a3m_reduce.dir/build make[4]: Entering directory '/<>/mybuild' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_reduce.dir/a3m_reduce.cpp.o -o a3m_reduce ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 85%] Built target a3m_reduce make -f src/CMakeFiles/a3m_database_reduce.dir/build.make src/CMakeFiles/a3m_database_reduce.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/a3m_database_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/a3m_database_reduce.dir/build.make src/CMakeFiles/a3m_database_reduce.dir/build make[4]: Entering directory '/<>/mybuild' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_reduce.dir/a3m_database_reduce.cpp.o -o a3m_database_reduce ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 87%] Built target a3m_database_reduce make -f src/CMakeFiles/a3m_database_extract.dir/build.make src/CMakeFiles/a3m_database_extract.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/a3m_database_extract.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/a3m_database_extract.dir/build.make src/CMakeFiles/a3m_database_extract.dir/build make[4]: Entering directory '/<>/mybuild' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_extract.dir/a3m_database_extract.cpp.o -o a3m_database_extract ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 89%] Built target a3m_database_extract make -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/a3m_database_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/build make[4]: Entering directory '/<>/mybuild' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -o a3m_database_filter ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/mybuild' [ 91%] Built target a3m_database_filter make -f src/CMakeFiles/cstranslate.dir/build.make src/CMakeFiles/cstranslate.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/cstranslate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/cstranslate.dir/build.make src/CMakeFiles/cstranslate.dir/build make[4]: Entering directory '/<>/mybuild' [ 92%] Building CXX object src/CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cstranslate.dir/cs/cstranslate_app.cc.o -o cstranslate libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 92%] Built target cstranslate make -f src/CMakeFiles/hhblits_omp.dir/build.make src/CMakeFiles/hhblits_omp.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhblits_omp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhblits_omp.dir/build.make src/CMakeFiles/hhblits_omp.dir/build make[4]: Entering directory '/<>/mybuild' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/s390x-linux-gnu/include/c++/14/cstdio:42, from /usr/s390x-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/s390x-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/s390x-linux-gnu/include/c++/14/string:54, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/istream:40, from /usr/s390x-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_omp.dir/hhblits_omp.cpp.o -o hhblits_omp libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 94%] Built target hhblits_omp make -f src/CMakeFiles/hhsearch_omp.dir/build.make src/CMakeFiles/hhsearch_omp.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhsearch_omp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhsearch_omp.dir/build.make src/CMakeFiles/hhsearch_omp.dir/build make[4]: Entering directory '/<>/mybuild' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/s390x-linux-gnu/include/c++/14/cstdio:42, from /usr/s390x-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/s390x-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/s390x-linux-gnu/include/c++/14/string:54, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/istream:40, from /usr/s390x-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhsearch_omp.dir/hhblits_omp.cpp.o -o hhsearch_omp libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 96%] Built target hhsearch_omp make -f src/CMakeFiles/hhalign_omp.dir/build.make src/CMakeFiles/hhalign_omp.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhalign_omp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhalign_omp.dir/build.make src/CMakeFiles/hhalign_omp.dir/build make[4]: Entering directory '/<>/mybuild' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/s390x-linux-gnu/include/c++/14/cstdio:42, from /usr/s390x-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/s390x-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/s390x-linux-gnu/include/c++/14/string:54, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/istream:40, from /usr/s390x-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhalign_omp.dir/hhblits_omp.cpp.o -o hhalign_omp libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [ 98%] Built target hhalign_omp make -f src/CMakeFiles/hhblits_ca3m.dir/build.make src/CMakeFiles/hhblits_ca3m.dir/depend make[4]: Entering directory '/<>/mybuild' cd /<>/mybuild && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/mybuild /<>/mybuild/src /<>/mybuild/src/CMakeFiles/hhblits_ca3m.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhblits_ca3m.dir/build.make src/CMakeFiles/hhblits_ca3m.dir/build make[4]: Entering directory '/<>/mybuild' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o cd /<>/mybuild/src && /usr/bin/s390x-linux-gnu-g++ -DOPENMP -I/<>/mybuild/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/mybuild/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/s390x-linux-gnu/include/stdio.h:970, from /usr/s390x-linux-gnu/include/c++/14/cstdio:42, from /usr/s390x-linux-gnu/include/c++/14/ext/string_conversions.h:45, from /usr/s390x-linux-gnu/include/c++/14/bits/basic_string.h:4154, from /usr/s390x-linux-gnu/include/c++/14/string:54, from /usr/s390x-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/s390x-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/s390x-linux-gnu/include/c++/14/ios:44, from /usr/s390x-linux-gnu/include/c++/14/istream:40, from /usr/s390x-linux-gnu/include/c++/14/fstream:40, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/s390x-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m cd /<>/mybuild/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hhblits_ca3m.dir/hhblits_ca3m.cpp.o -o hhblits_ca3m libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/mybuild' [100%] Built target hhblits_ca3m make[3]: Leaving directory '/<>/mybuild' /usr/bin/cmake -E cmake_progress_start /<>/mybuild/CMakeFiles 0 make[2]: Leaving directory '/<>/mybuild' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/hhsuite/usr/libexec/hhsuite/bin dh_auto_install --builddirectory mybuild cd mybuild && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/mybuild' /usr/bin/cmake -S/<> -B/<>/mybuild --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/mybuild' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/mybuild' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Installing: /<>/debian/tmp/usr/data/context_data.crf -- Installing: /<>/debian/tmp/usr/data/context_data.lib -- Installing: /<>/debian/tmp/usr/data/cs219.lib -- Installing: /<>/debian/tmp/usr/data/do_not_delete -- Installing: /<>/debian/tmp/usr/data/do_not_delete.phr -- Installing: /<>/debian/tmp/usr/data/do_not_delete.pin -- Installing: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits -- Installing: /<>/debian/tmp/usr/bin/hhmake -- Installing: /<>/debian/tmp/usr/bin/hhfilter -- Installing: /<>/debian/tmp/usr/bin/hhsearch -- Installing: /<>/debian/tmp/usr/bin/hhalign -- Installing: /<>/debian/tmp/usr/bin/hhconsensus -- Installing: /<>/debian/tmp/usr/bin/a3m_extract -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter -- Installing: /<>/debian/tmp/usr/bin/cstranslate -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m -- Installing: /<>/debian/tmp/usr/scripts/a3m.py -- Installing: /<>/debian/tmp/usr/scripts/addss.pl -- Installing: /<>/debian/tmp/usr/scripts/Align.pm -- Installing: /<>/debian/tmp/usr/scripts/check_a3m.py -- Installing: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Installing: /<>/debian/tmp/usr/scripts/ffindex.py -- Installing: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Installing: /<>/debian/tmp/usr/scripts/hh_reader.py -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Installing: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Installing: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Installing: /<>/debian/tmp/usr/scripts/mergeali.pl -- Installing: /<>/debian/tmp/usr/scripts/multithread.pl -- Installing: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Installing: /<>/debian/tmp/usr/scripts/reformat.pl -- Installing: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Installing: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/mybuild' for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter ; do dh_install -phhsuite usr/bin/${prog} usr/bin/ ; done dh_install -phhsuite usr/bin/cstranslate* usr/libexec/hhsuite/bin dh_install -phhsuite usr/bin/ffindex_* usr/bin/ make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/tmp/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhalign Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/tmp/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhblits Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/tmp/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhblits_omp Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/tmp/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhconsensus Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/tmp/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhfilter Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/tmp/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhmake Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/tmp/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1' help2man: can't get `-h all' info from debian/tmp/usr/bin/hhsearch Try `--no-discard-stderr' if option outputs to stderr dh_installman --arch make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-8_s390x.deb'. dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-8_s390x.deb'. dpkg-genbuildinfo --build=any -O../hhsuite_3.3.0+ds-8_s390x.buildinfo dpkg-genchanges --build=any -O../hhsuite_3.3.0+ds-8_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-14T04:47:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hhsuite_3.3.0+ds-8_s390x.changes: --------------------------------- Format: 1.8 Date: Sun, 13 Aug 2023 10:47:11 +0200 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 3.3.0+ds-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment Closes: 1037689 Changes: hhsuite (3.3.0+ds-8) unstable; urgency=medium . * Team upload. * gcc-13.patch: new: fix ftbfs with gcc 13. (Closes: #1037689) * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 76744e1ccb2fa6b4eb76cb6cdb0362f10f22268f 19514664 hhsuite-dbgsym_3.3.0+ds-8_s390x.deb 728df8fc5ad9b9f3494667235ee132b5be26cc7d 7156 hhsuite_3.3.0+ds-8_s390x.buildinfo fdfcf7203e2095a951717245448a0b63366ad9f4 10686116 hhsuite_3.3.0+ds-8_s390x.deb Checksums-Sha256: 61e499366d7299b4a11b40e16cab8ca8392ca7f1437177f5a9d8baf567598ca8 19514664 hhsuite-dbgsym_3.3.0+ds-8_s390x.deb 445845d068a75639f0494370092ff0f54e6a7d59b65dbb2d1e5d132c80097d54 7156 hhsuite_3.3.0+ds-8_s390x.buildinfo d8700dfea407941437ace6b17d835e64e2061535a39d4897037757781f6b8541 10686116 hhsuite_3.3.0+ds-8_s390x.deb Files: 48cbadc3eae966a70e8326026f5c7c9d 19514664 debug optional hhsuite-dbgsym_3.3.0+ds-8_s390x.deb 31ac41e9b979cf06f298392e72982f68 7156 science optional hhsuite_3.3.0+ds-8_s390x.buildinfo 10a0da53783ea8d272f0e9a9dfa812b1 10686116 science optional hhsuite_3.3.0+ds-8_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Architecture: s390x Version: 3.3.0+ds-8 Checksums-Md5: 48cbadc3eae966a70e8326026f5c7c9d 19514664 hhsuite-dbgsym_3.3.0+ds-8_s390x.deb 10a0da53783ea8d272f0e9a9dfa812b1 10686116 hhsuite_3.3.0+ds-8_s390x.deb Checksums-Sha1: 76744e1ccb2fa6b4eb76cb6cdb0362f10f22268f 19514664 hhsuite-dbgsym_3.3.0+ds-8_s390x.deb fdfcf7203e2095a951717245448a0b63366ad9f4 10686116 hhsuite_3.3.0+ds-8_s390x.deb Checksums-Sha256: 61e499366d7299b4a11b40e16cab8ca8392ca7f1437177f5a9d8baf567598ca8 19514664 hhsuite-dbgsym_3.3.0+ds-8_s390x.deb d8700dfea407941437ace6b17d835e64e2061535a39d4897037757781f6b8541 10686116 hhsuite_3.3.0+ds-8_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 14 Oct 2024 04:47:56 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-5), binutils-common (= 2.43.1-5), binutils-x86-64-linux-gnu (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 3.30.5-1), cmake-data (= 3.30.5-1), coreutils (= 9.4-3.1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-6), cpp-14-x86-64-linux-gnu (= 14.2.0-6), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-1.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-6), g++-14-x86-64-linux-gnu (= 14.2.0-6), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 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1.47.1-1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libcurl4t64 (= 8.10.1-2), libdav1d7 (= 1.4.3-1), libdb5.3t64 (= 5.3.28+dfsg2-8), libde265-0 (= 1.0.15-1+b2), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdeflate0 (= 1.22-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libexpat1 (= 2.6.3-1), libffi8 (= 3.4.6-1), libfftw3-double3 (= 3.3.10-1+b3), libfile-stripnondeterminism-perl (= 1.14.0-1), libfontconfig1 (= 2.15.0-1.1), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.2.0-6), libgcc-s1 (= 14.2.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libglib2.0-0t64 (= 2.82.1-1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-6), libgprofng0 (= 2.43.1-5), libgssapi-krb5-2 (= 1.21.3-3), libheif-plugin-dav1d (= 1.18.2-2), libheif-plugin-libde265 (= 1.18.2-2), libheif1 (= 1.18.2-2), libhogweed6t64 (= 3.10-1), libhwasan0 (= 14.2.0-6), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-6), libjansson4 (= 2.14-2+b2), libjbig0 (= 2.1-6.1+b1), libjpeg62-turbo (= 1:2.1.5-3), libjsoncpp26 (= 1.9.6-2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), liblcms2-2 (= 2.16-2), libldap-2.5-0 (= 2.5.18+dfsg-3), liblerc4 (= 4.0.0+ds-4+b1), liblocale-gettext-perl (= 1.07-7), liblqr-1-0 (= 0.4.2-2.1+b1), liblsan0 (= 14.2.0-6), libltdl7 (= 2.4.7-7+b1), liblz4-1 (= 1.9.4-3), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmagickcore-6.q16-7t64 (= 8:6.9.13.12+dfsg1-1), libmagickwand-6.q16-7t64 (= 8:6.9.13.12+dfsg1-1), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.63.0-1), libopenjp2-7 (= 2.5.0-2+b3), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.8-1), libpng16-16t64 (= 1.6.44-2), libproc2-0 (= 2:4.0.4-6), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14.2.0-6), libraw23t64 (= 0.21.2-2.1), librhash1 (= 1.4.4-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-8), libsasl2-modules-db (= 2.1.28+dfsg1-8), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsharpyuv0 (= 1.4.0-0.1), libsimde-dev (= 0.8.2-1), libsmartcols1 (= 2.40.2-9), libssh2-1t64 (= 1.11.0-7), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-6), libstdc++6 (= 14.2.0-6), libsystemd0 (= 256.7-1), libtasn1-6 (= 4.19.0-3+b2), libtiff6 (= 4.5.1+git230720-5), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-6), libubsan1 (= 14.2.0-6), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libuv1t64 (= 1.48.0-6), libwebp7 (= 1.4.0-0.1), libwebpdemux2 (= 1.4.0-0.1), libwebpmux3 (= 1.4.0-0.1), libx11-6 (= 2:1.8.7-1+b1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1+b1), libxcb1 (= 1.17.0-2), libxdmcp6 (= 1:1.1.2-3+b1), libxext6 (= 2:1.3.4-1+b2), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.2-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-9), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1691916431" 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hhsuite_3.3.0+ds-8_s390x.deb ---------------------------- new Debian package, version 2.0. size 10686116 bytes: control archive=2712 bytes. 1471 bytes, 29 lines control 4311 bytes, 65 lines md5sums Package: hhsuite Version: 3.3.0+ds-8 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 79570 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 14), perl:any, hhsuite-data (= 3.3.0+ds-8), python3 Conflicts: ffindex Built-Using: simde (= 0.8.2-1) Section: science Priority: optional Homepage: https://toolkit.tuebingen.mpg.de/ Description: sensitive protein sequence searching based on HMM-HMM alignment HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). . This package contains HHsearch and HHblits among other programs and utilities. . HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling. . HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments. drwxr-xr-x root/root 0 2023-08-13 08:47 ./ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/bin/ -rwxr-xr-x root/root 51456 2023-08-13 08:47 ./usr/bin/a3m_database_extract -rwxr-xr-x root/root 55552 2023-08-13 08:47 ./usr/bin/a3m_database_filter -rwxr-xr-x root/root 51456 2023-08-13 08:47 ./usr/bin/a3m_database_reduce -rwxr-xr-x root/root 47360 2023-08-13 08:47 ./usr/bin/a3m_extract -rwxr-xr-x root/root 47360 2023-08-13 08:47 ./usr/bin/a3m_reduce -rwxr-xr-x root/root 26952 2023-08-13 08:47 ./usr/bin/ffindex_apply -rwxr-xr-x root/root 27016 2023-08-13 08:47 ./usr/bin/ffindex_build -rwxr-xr-x root/root 22792 2023-08-13 08:47 ./usr/bin/ffindex_from_fasta -rwxr-xr-x root/root 22696 2023-08-13 08:47 ./usr/bin/ffindex_from_fasta_with_split -rwxr-xr-x root/root 22760 2023-08-13 08:47 ./usr/bin/ffindex_get -rwxr-xr-x root/root 22856 2023-08-13 08:47 ./usr/bin/ffindex_modify -rwxr-xr-x root/root 22696 2023-08-13 08:47 ./usr/bin/ffindex_order -rwxr-xr-x root/root 22696 2023-08-13 08:47 ./usr/bin/ffindex_reduce -rwxr-xr-x root/root 22696 2023-08-13 08:47 ./usr/bin/ffindex_unpack -rwxr-xr-x root/root 8317376 2023-08-13 08:47 ./usr/bin/hhalign -rwxr-xr-x root/root 8325568 2023-08-13 08:47 ./usr/bin/hhalign_omp -rwxr-xr-x root/root 8272320 2023-08-13 08:47 ./usr/bin/hhblits -rwxr-xr-x root/root 8276416 2023-08-13 08:47 ./usr/bin/hhblits_ca3m -rwxr-xr-x root/root 8280512 2023-08-13 08:47 ./usr/bin/hhblits_omp -rwxr-xr-x root/root 7723360 2023-08-13 08:47 ./usr/bin/hhconsensus -rwxr-xr-x root/root 436568 2023-08-13 08:47 ./usr/bin/hhfilter -rwxr-xr-x root/root 7702880 2023-08-13 08:47 ./usr/bin/hhmake -rwxr-xr-x root/root 8305088 2023-08-13 08:47 ./usr/bin/hhsearch -rwxr-xr-x root/root 8317376 2023-08-13 08:47 ./usr/bin/hhsearch_omp drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/ lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/lib/hh -> hhsuite drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/data/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete -rw-r--r-- root/root 135 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.phr -rw-r--r-- root/root 112 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.pin -rw-r--r-- root/root 433 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.psq lrwxrwxrwx root/root 0 2023-08-13 08:47 ./usr/lib/hhsuite/scripts -> ../../share/hhsuite/scripts drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/libexec/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/libexec/hhsuite/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/libexec/hhsuite/bin/ -rwxr-xr-x root/root 6289824 2023-08-13 08:47 ./usr/libexec/hhsuite/bin/cstranslate drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/hhsuite/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/share/doc/hhsuite/README.md.gz -rw-r--r-- root/root 1841 2023-08-13 08:47 ./usr/share/doc/hhsuite/changelog.Debian.gz -rw-r--r-- root/root 20399 2023-08-13 08:47 ./usr/share/doc/hhsuite/copyright drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/doc/hhsuite/examples/ -rw-r--r-- root/root 32126 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.a3m -rw-r--r-- root/root 57578 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhm -rw-r--r-- root/root 181765 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhr -rw-r--r-- root/root 506 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.seq drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/hhsuite/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/hhsuite/scripts/ -rw-r--r-- root/root 24577 2020-08-16 23:16 ./usr/share/hhsuite/scripts/Align.pm -rw-r--r-- root/root 4710 2020-08-16 23:16 ./usr/share/hhsuite/scripts/HHPaths.pm -rwxr-xr-x 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./usr/share/hhsuite/scripts/hhsuitedb.py -rwxr-xr-x root/root 20214 2020-08-16 23:16 ./usr/share/hhsuite/scripts/mergeali.pl -rwxr-xr-x root/root 5717 2023-08-13 08:47 ./usr/share/hhsuite/scripts/multithread.pl -rwxr-xr-x root/root 40490 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdb2fasta.pl -rwxr-xr-x root/root 13183 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdbfilter.pl -rwxr-xr-x root/root 8648 2023-08-13 08:47 ./usr/share/hhsuite/scripts/pdbfilter.py -rwxr-xr-x root/root 28328 2020-08-16 23:16 ./usr/share/hhsuite/scripts/reformat.pl -rwxr-xr-x root/root 14019 2023-08-13 08:47 ./usr/share/hhsuite/scripts/renumberpdb.pl -rwxr-xr-x root/root 3651 2023-08-13 08:47 ./usr/share/hhsuite/scripts/splitfasta.pl drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/man/ drwxr-xr-x root/root 0 2023-08-13 08:47 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhalign.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhblits.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhblits_omp.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhconsensus.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhfilter.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhmake.1.gz -rw-r--r-- root/root 20 2023-08-13 08:47 ./usr/share/man/man1/hhsearch.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1340 B] Get:5 copy:/<>/apt_archive ./ Packages [1419 B] Fetched 3374 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:s390x shared-mime-info t1utils ucf unzip 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 15.7 MB of archives. After this operation, 66.0 MB of additional disk space will be used. 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sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:66 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.84-1 [23.9 kB] Get:68 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get:69 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:70 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:73 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:74 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:75 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:77 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:78 http://localhost:3142/debian sid/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:79 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:84 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-2 [31.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:86 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:87 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:88 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:90 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:91 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:92 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:93 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:95 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:96 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:97 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:98 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:99 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:101 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:102 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:104 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get:105 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-3 [54.4 kB] Get:106 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:107 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:108 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:110 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:111 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:112 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:113 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.11-1 [143 kB] Get:114 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:117 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:118 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:120 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:121 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:122 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:123 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:124 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:125 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:126 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.46-1 [64.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.30-1 [27.0 kB] Get:128 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:129 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:130 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:131 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:132 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:133 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:134 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:135 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:136 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:137 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:138 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:139 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5 [314 kB] Get:140 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.902.0+ds-2 [35.1 kB] Get:141 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-2 [63.6 kB] Get:142 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:143 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:144 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:145 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:146 http://localhost:3142/debian sid/main amd64 lintian all 2.119.0 [1056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.7 MB in 0s (157 MB/s) Selecting previously unselected package netbase. (Reading database ... 24469 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../005-shared-mime-info_2.4-5+b1_amd64.deb ... Unpacking shared-mime-info (2.4-5+b1) ... 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Preparing to unpack .../017-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../018-gpgconf_2.2.44-1_amd64.deb ... Unpacking gpgconf (2.2.44-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../019-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... 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Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../026-libdevel-callchecker-perl_0.009-1_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-1) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../027-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../028-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../029-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../030-libmodule-implementation-perl_0.09-2_all.deb ... 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Unpacking libparams-util-perl (1.102-3) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../047-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../048-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../049-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../050-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../051-libcpanel-json-xs-perl_4.38-1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.38-1) ... Selecting previously unselected package libdevel-stacktrace-perl. 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Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.15~pre1-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl:amd64 (2.5.11-1) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.38-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxmlb2:amd64 (0.3.19-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.902.0+ds-2) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up liblzo2-2:amd64 (2.10-3) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... 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Setting up libnghttp3-9:amd64 (1.4.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:amd64 (0.27-1+b2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.146-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.6.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libstemmer0d:amd64 (2.2.0-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.3.2-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-5) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libcurl3t64-gnutls:amd64 (8.10.1-2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libappstream5:amd64 (1.0.3-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.46-1) ... Setting up appstream (1.0.3-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up gpgconf (2.2.44-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.44-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.11-2) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.119.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 640480 Build-Time: 174 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 11 Job: hhsuite_3.3.0+ds-8 Lintian: pass Machine Architecture: amd64 Package: hhsuite Package-Time: 195 Source-Version: 3.3.0+ds-8 Space: 640480 Status: successful Version: 3.3.0+ds-8 -------------------------------------------------------------------------------- Finished at 2024-10-14T04:47:56Z Build needed 00:03:15, 640480k disk space