sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | hhsuite 3.3.0+ds-9 (amd64) Mon, 20 Oct 2025 13:10:03 +0000 | +==============================================================================+ Package: hhsuite Version: 3.3.0+ds-9 Source Version: 3.3.0+ds-9 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.wWNgfw6y0C... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-91vFP5/resolver-dEfCeT' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [207 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.2 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [10.2 MB] Fetched 31.7 MB in 7s (4337 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: diffutils libselinux1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 477 kB of archives. After this operation, 91.1 kB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 diffutils arm64 1:3.12-1 [397 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libselinux1 arm64 3.9-2 [80.1 kB] Fetched 477 kB in 0s (14.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12013 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.12-1_arm64.deb ... Unpacking diffutils (1:3.12-1) over (1:3.10-4) ... Setting up diffutils (1:3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12013 files and directories currently installed.) Preparing to unpack .../libselinux1_3.9-2_arm64.deb ... Unpacking libselinux1:arm64 (3.9-2) over (3.9-1) ... Setting up libselinux1:arm64 (3.9-2) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4794 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (dsc) [2153 B] Get:2 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (tar) [4775 kB] Get:3 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (diff) [16.9 kB] Fetched 4794 kB in 0s (44.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hhsuite-91vFP5/hhsuite-3.3.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-91vFP5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [801 B] Fetched 2168 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libffi8 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0t64 libgnutls30t64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0:amd64 libhwasan0-amd64-cross libidn2-0 libitm1:amd64 libitm1-amd64-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblocale-gettext-perl liblqr-1-0 liblsan0:amd64 liblsan0-amd64-cross libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtasn1-6 libtiff6 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff imagemagick-7-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig libraw-bin xdg-utils lrzip glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libfftw3-bin libfftw3-dev low-memory-monitor gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libstdc++-15-doc:amd64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libmagickcore-7.q16-10-extra ghostscript netpbm libidn2-0:amd64 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-15-base:amd64 gcc-15-cross-base gcc-15-x86-64-linux-gnu gcc-15-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libffi8 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-15-dev:amd64 libgcc-15-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libglib2.0-0t64 libgnutls30t64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0:amd64 libhwasan0-amd64-cross libidn2-0 libitm1:amd64 libitm1-amd64-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblocale-gettext-perl liblqr-1-0 liblsan0:amd64 liblsan0-amd64-cross libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-15-dev:amd64 libstdc++-15-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libtasn1-6 libtiff6 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 linux-libc-dev-amd64-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 351 MB of archives. After this operation, 1525 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.20.2-2+b1 [18.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libde265-0 arm64 1.0.16-1 [153 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.20.2-2+b1 [16.9 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libheif1 arm64 1.20.2-2+b1 [504 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.0-5 [1434 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-5 [415 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libraw23t64 arm64 0.21.4-2 [371 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.2.7+dfsg1-1 [69.2 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.2.7+dfsg1-1 [1623 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.2.7+dfsg1-1 [268 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get:69 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.16.0-4 [368 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get:89 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu-base arm64 15.2.0-4cross1 [53.0 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 cpp-15-x86-64-linux-gnu arm64 15.2.0-4cross1 [83.7 MB] Get:91 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:15.2.0-4 [5296 B] Get:92 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.45-7 [1566 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 gcc-15-cross-base all 15.2.0-4cross1 [48.4 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 15.2.0-4cross1 [71.6 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 15.2.0-4cross1 [132 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 15.2.0-4cross1 [25.9 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 15.2.0-4cross1 [9232 B] Get:98 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 15.2.0-4cross1 [2770 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 15.2.0-4cross1 [1247 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 15.2.0-4cross1 [2480 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.41-11cross1 [1560 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 15.2.0-4cross1 [689 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 15.2.0-4cross1 [1107 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 15.2.0-4cross1 [1534 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 15.2.0-4cross1 [145 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev-amd64-cross all 15.2.0-4cross1 [2707 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 gcc-15-x86-64-linux-gnu arm64 15.2.0-4cross1 [92.1 MB] Get:108 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:15.2.0-4 [1448 B] Get:109 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.12.38-1cross1 [2470 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.41-11cross1 [1992 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev-amd64-cross all 15.2.0-4cross1 [2423 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 g++-15-x86-64-linux-gnu arm64 15.2.0-4cross1 [89.1 MB] Get:113 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:15.2.0-4 [1200 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:115 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:121 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.37.1.2-1 [29.7 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.37.1.2-1 [75.4 kB] Get:129 http://mirror.einval.org/debian unstable/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.2.7+dfsg1-1 [728 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 imagemagick arm64 8:7.1.2.7+dfsg1-1 [21.8 kB] Get:134 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:135 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.41-12 [2846 kB] Get:136 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 15.2.0-4 [2778 kB] Get:137 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 15.2.0-4 [9508 B] Get:138 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:139 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:140 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.41-12 [1991 kB] Get:141 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 15.2.0-4 [26.5 kB] Get:143 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 15.2.0-4 [1249 kB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 15.2.0-4 [2491 kB] Get:145 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 15.2.0-4 [1108 kB] Get:147 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 15.2.0-4 [1538 kB] Get:148 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 15.2.0-4 [145 kB] Get:149 http://mirror.einval.org/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-4 [2719 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Get:151 http://mirror.einval.org/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-4 [2421 kB] Preconfiguring packages ... Fetched 351 MB in 4s (99.7 MB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 12015 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../002-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../003-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../004-libpng16-16t64_1.6.50-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../005-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../008-fontconfig-config_2.15.0-2.4_arm64.deb ... Unpacking fontconfig-config (2.15.0-2.4) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../009-libfontconfig1_2.15.0-2.4_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-2.4) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../010-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../011-libdav1d7_1.5.1-1_arm64.deb ... Unpacking libdav1d7:arm64 (1.5.1-1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../012-libheif-plugin-dav1d_1.20.2-2+b1_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.20.2-2+b1) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../013-libde265-0_1.0.16-1_arm64.deb ... Unpacking libde265-0:arm64 (1.0.16-1) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../014-libheif-plugin-libde265_1.20.2-2+b1_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.20.2-2+b1) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../015-libheif1_1.20.2-2+b1_arm64.deb ... Unpacking libheif1:arm64 (1.20.2-2+b1) ... Selecting previously unselected package libjbig0:arm64. 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Preparing to unpack .../028-libtiff6_4.7.1-1_arm64.deb ... Unpacking libtiff6:arm64 (4.7.1-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../029-libwebpdemux2_1.5.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../030-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../031-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../032-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../033-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. 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Unpacking libmagickcore-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Selecting previously unselected package libmagickwand-7.q16-10:arm64. Preparing to unpack .../040-libmagickwand-7.q16-10_8%3a7.1.2.7+dfsg1-1_arm64.deb ... Unpacking libmagickwand-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../041-libncursesw6_6.5+20250216-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../042-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../043-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../044-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../045-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../046-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../047-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../048-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../049-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../050-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../051-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../052-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../053-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../054-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../055-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../056-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../057-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... 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Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../064-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../065-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../066-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../067-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../068-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. 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Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libltdl7:arm64 (2.5.4-5) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libraw23t64:arm64 (0.21.4-2) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:arm64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:arm64 (4.7.1-1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up gcc-15-cross-base (15.2.0-4cross1) ... Setting up libde265-0:arm64 (1.0.16-1) ... Setting up libgcc-s1-amd64-cross (15.2.0-4cross1) ... Setting up gcc-15-base:amd64 (15.2.0-4) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up binutils-x86-64-linux-gnu (2.45-7) ... Setting up libstdc++6-amd64-cross (15.2.0-4cross1) ... Setting up cpp-x86-64-linux-gnu (4:15.2.0-4) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libasan8-amd64-cross (15.2.0-4cross1) ... Setting up liblsan0-amd64-cross (15.2.0-4cross1) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libc6-dev-amd64-cross (2.41-11cross1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libtsan2-amd64-cross (15.2.0-4cross1) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libgomp1-amd64-cross (15.2.0-4cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up libitm1-amd64-cross (15.2.0-4cross1) ... Setting up libglib2.0-0t64:arm64 (2.86.0-5) ... No schema files found: doing nothing. Setting up libatomic1-amd64-cross (15.2.0-4cross1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libhwasan0-amd64-cross (15.2.0-4cross1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libquadmath0-amd64-cross (15.2.0-4cross1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libubsan1-amd64-cross (15.2.0-4cross1) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up groff-base (1.23.0-9) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-15-dev-amd64-cross (15.2.0-4cross1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libstdc++-15-dev-amd64-cross (15.2.0-4cross1) ... Setting up libcurl4t64:arm64 (8.16.0-4) ... Setting up debhelper (13.28) ... Setting up gcc-15-x86-64-linux-gnu (15.2.0-4cross1) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up g++-15-x86-64-linux-gnu (15.2.0-4cross1) ... Setting up gcc-x86-64-linux-gnu (4:15.2.0-4) ... Setting up g++-x86-64-linux-gnu (4:15.2.0-4) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up libheif-plugin-dav1d:arm64 (1.20.2-2+b1) ... Setting up libheif1:arm64 (1.20.2-2+b1) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Setting up libc6:amd64 (2.41-12) ... Setting up libhwasan0:amd64 (15.2.0-4) ... Setting up libasan8:amd64 (15.2.0-4) ... Setting up libtsan2:amd64 (15.2.0-4) ... Setting up libstdc++6:amd64 (15.2.0-4) ... Setting up liblsan0:amd64 (15.2.0-4) ... Setting up libitm1:amd64 (15.2.0-4) ... Setting up libheif-plugin-libde265:arm64 (1.20.2-2+b1) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Setting up libcrypt1:amd64 (1:4.4.38-1) ... Setting up libgomp1:amd64 (15.2.0-4) ... Setting up libquadmath0:amd64 (15.2.0-4) ... Setting up libatomic1:amd64 (15.2.0-4) ... Setting up libubsan1:amd64 (15.2.0-4) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libc6-dev:amd64 (2.41-12) ... Setting up imagemagick-7.q16 (8:7.1.2.7+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode Setting up libgcc-15-dev:amd64 (15.2.0-4) ... Setting up libstdc++-15-dev:amd64 (15.2.0-4) ... Setting up imagemagick (8:7.1.2.7+dfsg1-1) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for base-files (14) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-37-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) arm64 (aarch64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-amd64-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-amd64-cross_15.2.0-4cross1 linux-libc-dev_6.16.12-2 Package versions: apt_3.1.8 apt-utils_3.1.8 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-aarch64-linux-gnu_2.45-7 binutils-common_2.45-7 binutils-x86-64-linux-gnu_2.45-7 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-aarch64-linux-gnu_15.2.0-4 cpp-15-x86-64-linux-gnu_15.2.0-4cross1 cpp-aarch64-linux-gnu_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-amd64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig-config_2.15.0-2.4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-aarch64-linux-gnu_15.2.0-4 g++-15-x86-64-linux-gnu_15.2.0-4cross1 g++-aarch64-linux-gnu_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-4 gcc-15-aarch64-linux-gnu_15.2.0-4 gcc-15-base_15.2.0-4 gcc-15-cross-base_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-4cross1 gcc-15-x86-64-linux-gnu-base_15.2.0-4cross1 gcc-aarch64-linux-gnu_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 help2man_1.49.3+b1 hicolor-icon-theme_0.18-2 hostname_3.25 imagemagick_8:7.1.2.7+dfsg1-1 imagemagick-7-common_8:7.1.2.7+dfsg1-1 imagemagick-7.q16_8:7.1.2.7+dfsg1-1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.8 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-4 libasan8-amd64-cross_15.2.0-4cross1 libatomic1_15.2.0-4 libatomic1-amd64-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-amd64-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-amd64-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libcurl4t64_8.16.0-4 libdav1d7_1.5.1-1 libdb5.3t64_5.3.28+dfsg2-10 libde265-0_1.0.16-1 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfftw3-double3_3.3.10-2+b1 libfile-stripnondeterminism-perl_1.15.0-1 libfontconfig1_2.15.0-2.4 libfreetype6_2.13.3+dfsg-1 libgcc-15-dev_15.2.0-4 libgcc-15-dev-amd64-cross_15.2.0-4cross1 libgcc-s1_15.2.0-4 libgcc-s1-amd64-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libglib2.0-0t64_2.86.0-5 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-4 libgomp1-amd64-cross_15.2.0-4cross1 libgprofng0_2.45-7 libgssapi-krb5-2_1.21.3-5 libheif-plugin-dav1d_1.20.2-2+b1 libheif-plugin-libde265_1.20.2-2+b1 libheif1_1.20.2-2+b1 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-4 libhwasan0-amd64-cross_15.2.0-4cross1 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-4 libitm1-amd64-cross_15.2.0-4cross1 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libjsoncpp26_1.9.6-4 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblcms2-2_2.16-2 libldap2_2.6.10+dfsg-1 liblerc4_4.0.0+ds-5 liblocale-gettext-perl_1.07-7+b1 liblqr-1-0_0.4.2-2.1+b2 liblsan0_15.2.0-4 liblsan0-amd64-cross_15.2.0-4cross1 libltdl7_2.5.4-5 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmagickcore-7.q16-10_8:7.1.2.7+dfsg1-1 libmagickwand-7.q16-10_8:7.1.2.7+dfsg1-1 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libopenjp2-7_2.5.3-2.1 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpng16-16t64_1.6.50-1 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libquadmath0_15.2.0-4 libquadmath0-amd64-cross_15.2.0-4cross1 libraw23t64_0.21.4-2 librhash1_1.4.6-1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-2 libsframe2_2.45-7 libsharpyuv0_1.5.0-0.1 libsimde-dev_0.8.2-3 libsmartcols1_2.41.2-4 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-amd64-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-amd64-cross_15.2.0-4cross1 libsystemd0_258.1-1 libtasn1-6_4.20.0-2 libtiff6_4.7.1-1 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libtsan2_15.2.0-4 libtsan2-amd64-cross_15.2.0-4cross1 libubsan1_15.2.0-4 libubsan1-amd64-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258.1-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libwebp7_1.5.0-0.1 libwebpdemux2_1.5.0-0.1 libwebpmux3_1.5.0-0.1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.12-2 linux-libc-dev-amd64-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-1 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hhsuite Binary: hhsuite, hhsuite-data Architecture: any all Version: 3.3.0+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Sascha Steinbiss , Homepage: https://toolkit.tuebingen.mpg.de/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man Package-List: hhsuite deb science optional arch=any hhsuite-data deb science optional arch=all Checksums-Sha1: d90462ba593366296d8916e184b42325caa4201b 4775072 hhsuite_3.3.0+ds.orig.tar.xz 128e4d8b43032a85c68321b4a4661e17c1f23044 16904 hhsuite_3.3.0+ds-9.debian.tar.xz Checksums-Sha256: a81037f2e2a4801f1a42f5aa5939334fe038053d05ceabdc0899fefb8cc00a44 4775072 hhsuite_3.3.0+ds.orig.tar.xz 930c7195042d4c83975b99039a4df4904041a557a8d142f38dcc94f4ecc3f900 16904 hhsuite_3.3.0+ds-9.debian.tar.xz Files: d01293f2b8337f9b914b30976c2a87e9 4775072 hhsuite_3.3.0+ds.orig.tar.xz 4bb89a0a1a1f74616d3a20353441f119 16904 hhsuite_3.3.0+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjyZMkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGUng/8DARYxNCdXH2u7niHsiA+3O/aP9vlylHN nHOhDi1BU+CDGNYwKls9rRqbY2vsPqe/JagvsbBqLDOqY62TC0j7/pY+5MK8ZdcB PumSfXSbbaA4FsOOxjlInYXa1HrXO9n+NtfAXuFQ9GGZmxRtVEytKcVZ3XDF5lA7 6YpsPCuBR9cMclyE0bfLEwM5ALZJKi4w4KSB90oRQOOPfti1TQSc3GKz+ydAqxdc MmC+Uhe2mF/TYidVBRtm8bd2FBEVgYuhIr/at5kwgb7UOrdempVKG3ewvTmkdCWW JtIc/XkO1bHDmY2DSv2gN+7EHGsWwdquQu3m/Lc1sMKv6/qaFULSZm2Ja4NtWD6y iMtJgD/Js467eN6uDOBCNasJg+3fSHRNtkWXcYa1WEKm4UYHYhBYC1jKGKjwR5wG KcT/sTWAWPZTB9Q3fa7xbCz57w5V1z7PhjdqXIHsYqn119zh0bR/KmRJpQiRbQFK C4zPbBH20wqD5T+/wOVUYooYDU1YHiKBXTiK3VXJz/qPLHP+XyIUwam1mR+s+pPf 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CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.3.0+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; \ done cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx2 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx2 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx cd build_sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse4.1 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse4.1 cd build_ssse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-ssse3 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_ssse3 cd build_sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse3 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse3 export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd build_plain && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (5.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_plain make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_build --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles /<>/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src 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/<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx2' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx2' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make 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-Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx2' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script 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lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx2' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make 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-std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_avx2' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx2' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx2' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx2 /<>/build_avx2/data /<>/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx2' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx2/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.crf.h > /<>/build_avx2/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.crf.h.tmp /<>/build_avx2/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx2/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.lib.h > /<>/build_avx2/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.lib.h.tmp /<>/build_avx2/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx2/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/cs219.lib.h > /<>/build_avx2/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/cs219.lib.h.tmp /<>/build_avx2/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx2' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx2' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx2' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx2 /<>/build_avx2/src/cs /<>/build_avx2/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx2/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx2/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-avx2.dir/link.d "CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o" -o hhblits-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 70%] Built target hhblits-avx2 make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhmake-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-avx2.dir/link.d "CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o" -o hhmake-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 72%] Built target hhmake-avx2 make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhfilter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-avx2.dir/link.d "CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o" -o hhfilter-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 74%] Built target hhfilter-avx2 make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-avx2.dir/link.d "CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o" -o hhsearch-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 76%] Built target hhsearch-avx2 make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-avx2.dir/link.d "CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o" -o hhalign-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 78%] Built target hhalign-avx2 make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhconsensus-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-avx2.dir/link.d "CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o" -o hhconsensus-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 80%] Built target hhconsensus-avx2 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-avx2.dir/link.d "CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o" -o a3m_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 83%] Built target a3m_extract-avx2 make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-avx2.dir/link.d "CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 85%] Built target a3m_reduce-avx2 make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-avx2.dir/link.d "CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 87%] Built target a3m_database_reduce-avx2 make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-avx2.dir/link.d "CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 89%] Built target a3m_database_extract-avx2 make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_filter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-avx2.dir/link.d "CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 91%] Built target a3m_database_filter-avx2 make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/cstranslate-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-avx2.dir/link.d "CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx2 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 92%] Built target cstranslate-avx2 make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-avx2.dir/link.d "CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 94%] Built target hhblits_omp-avx2 make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-avx2.dir/link.d "CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 96%] Built target hhsearch_omp-avx2 make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-avx2.dir/link.d "CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 98%] Built target hhalign_omp-avx2 make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_ca3m-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o cd /<>/build_avx2/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx2.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-avx2.dir/link.d "CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [100%] Built target hhblits_ca3m-avx2 make[3]: Leaving directory '/<>/build_avx2' /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles /<>/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_avx' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_avx' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o 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/<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o 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Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src 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Linking C executable ffindex_modify cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src 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Linking C executable ffindex_unpack cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx /<>/build_avx/data /<>/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.crf.h > /<>/build_avx/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.crf.h.tmp /<>/build_avx/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.lib.h > /<>/build_avx/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.lib.h.tmp /<>/build_avx/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/cs219.lib.h > /<>/build_avx/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/cs219.lib.h.tmp /<>/build_avx/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx /<>/build_avx/src/cs /<>/build_avx/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-avx.dir/link.d "CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o" -o hhblits-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 70%] Built target hhblits-avx make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhmake-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-avx.dir/link.d "CMakeFiles/hhmake-avx.dir/hhmake.cpp.o" -o hhmake-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 72%] Built target hhmake-avx make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhfilter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-avx.dir/link.d "CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o" -o hhfilter-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 74%] Built target hhfilter-avx make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-avx.dir/link.d "CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o" -o hhsearch-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 76%] Built target hhsearch-avx make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-avx.dir/link.d "CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o" -o hhalign-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 78%] Built target hhalign-avx make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhconsensus-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-avx.dir/link.d "CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o" -o hhconsensus-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 80%] Built target hhconsensus-avx make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-avx.dir/link.d "CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o" -o a3m_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 83%] Built target a3m_extract-avx make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-avx.dir/link.d "CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 85%] Built target a3m_reduce-avx make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-avx.dir/link.d "CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 87%] Built target a3m_database_reduce-avx make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-avx.dir/link.d "CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 89%] Built target a3m_database_extract-avx make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_filter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-avx.dir/link.d "CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 91%] Built target a3m_database_filter-avx make -f src/CMakeFiles/cstranslate-avx.dir/build.make src/CMakeFiles/cstranslate-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/cstranslate-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/cstranslate-avx.dir/build.make src/CMakeFiles/cstranslate-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-avx.dir/link.d "CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 92%] Built target cstranslate-avx make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-avx.dir/link.d "CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 94%] Built target hhblits_omp-avx make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-avx.dir/link.d "CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 96%] Built target hhsearch_omp-avx make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-avx.dir/link.d "CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 98%] Built target hhalign_omp-avx make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_ca3m-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o cd /<>/build_avx/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-avx.dir/link.d "CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [100%] Built target hhblits_ca3m-avx make[3]: Leaving directory '/<>/build_avx' /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles /<>/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse4.1 /<>/build_sse4.1/data /<>/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse4.1/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.crf.h > /<>/build_sse4.1/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.crf.h.tmp /<>/build_sse4.1/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse4.1/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.lib.h > /<>/build_sse4.1/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.lib.h.tmp /<>/build_sse4.1/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse4.1/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/cs219.lib.h > /<>/build_sse4.1/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/cs219.lib.h.tmp /<>/build_sse4.1/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse4.1' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse4.1' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse4.1 /<>/build_sse4.1/src/cs /<>/build_sse4.1/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse4.1.dir/link.d "CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o" -o hhblits-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 70%] Built target hhblits-sse4.1 make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhmake-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse4.1.dir/link.d "CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o" -o hhmake-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 72%] Built target hhmake-sse4.1 make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhfilter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse4.1.dir/link.d "CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o" -o hhfilter-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 74%] Built target hhfilter-sse4.1 make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse4.1.dir/link.d "CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o" -o hhsearch-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 76%] Built target hhsearch-sse4.1 make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse4.1.dir/link.d "CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o" -o hhalign-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 78%] Built target hhalign-sse4.1 make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhconsensus-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse4.1.dir/link.d "CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o" -o hhconsensus-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 80%] Built target hhconsensus-sse4.1 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse4.1.dir/link.d "CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o" -o a3m_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 83%] Built target a3m_extract-sse4.1 make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse4.1.dir/link.d "CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 85%] Built target a3m_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse4.1.dir/link.d "CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 87%] Built target a3m_database_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-sse4.1.dir/link.d "CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 89%] Built target a3m_database_extract-sse4.1 make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_filter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse4.1.dir/link.d "CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 91%] Built target a3m_database_filter-sse4.1 make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/cstranslate-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse4.1.dir/link.d "CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse4.1 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 92%] Built target cstranslate-sse4.1 make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse4.1.dir/link.d "CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 94%] Built target hhblits_omp-sse4.1 make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse4.1.dir/link.d "CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 96%] Built target hhsearch_omp-sse4.1 make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse4.1.dir/link.d "CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 98%] Built target hhalign_omp-sse4.1 make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_ca3m-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o cd /<>/build_sse4.1/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse4.1.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse4.1.dir/link.d "CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [100%] Built target hhblits_ca3m-sse4.1 make[3]: Leaving directory '/<>/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles /<>/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_ssse3 /<>/build_ssse3/data /<>/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_ssse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.crf.h > /<>/build_ssse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.crf.h.tmp /<>/build_ssse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_ssse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.lib.h > /<>/build_ssse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.lib.h.tmp /<>/build_ssse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_ssse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/cs219.lib.h > /<>/build_ssse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/cs219.lib.h.tmp /<>/build_ssse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_ssse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_ssse3' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o 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cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_ssse3 /<>/build_ssse3/src/cs /<>/build_ssse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_ssse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-ssse3.dir/link.d "CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o" -o hhblits-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 70%] Built target hhblits-ssse3 make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhmake-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-ssse3.dir/link.d "CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o" -o hhmake-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 72%] Built target hhmake-ssse3 make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhfilter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-ssse3.dir/link.d "CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o" -o hhfilter-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 74%] Built target hhfilter-ssse3 make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-ssse3.dir/link.d "CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o" -o hhsearch-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 76%] Built target hhsearch-ssse3 make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-ssse3.dir/link.d "CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o" -o hhalign-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 78%] Built target hhalign-ssse3 make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhconsensus-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-ssse3.dir/link.d "CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o" -o hhconsensus-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 80%] Built target hhconsensus-ssse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-ssse3.dir/link.d "CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o" -o a3m_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 83%] Built target a3m_extract-ssse3 make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-ssse3.dir/link.d "CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 85%] Built target a3m_reduce-ssse3 make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-ssse3.dir/link.d "CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 87%] Built target a3m_database_reduce-ssse3 make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-ssse3.dir/link.d "CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 89%] Built target a3m_database_extract-ssse3 make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_filter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-ssse3.dir/link.d "CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 91%] Built target a3m_database_filter-ssse3 make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/cstranslate-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-ssse3.dir/link.d "CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-ssse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 92%] Built target cstranslate-ssse3 make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-ssse3.dir/link.d "CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 94%] Built target hhblits_omp-ssse3 make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-ssse3.dir/link.d "CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 96%] Built target hhsearch_omp-ssse3 make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-ssse3.dir/link.d "CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 98%] Built target hhalign_omp-ssse3 make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_ca3m-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o cd /<>/build_ssse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-ssse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-ssse3.dir/link.d "CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [100%] Built target hhblits_ca3m-ssse3 make[3]: Leaving directory '/<>/build_ssse3' /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles /<>/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse3' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse3 /<>/build_sse3/data /<>/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.crf.h > /<>/build_sse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.crf.h.tmp /<>/build_sse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.lib.h > /<>/build_sse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.lib.h.tmp /<>/build_sse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/cs219.lib.h > /<>/build_sse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/cs219.lib.h.tmp /<>/build_sse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse3' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse3 /<>/build_sse3/src/cs /<>/build_sse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse3/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse3.dir/link.d "CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o" -o hhblits-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 70%] Built target hhblits-sse3 make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhmake-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse3.dir/link.d "CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o" -o hhmake-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 72%] Built target hhmake-sse3 make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhfilter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse3.dir/link.d "CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o" -o hhfilter-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 74%] Built target hhfilter-sse3 make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse3.dir/link.d "CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o" -o hhsearch-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 76%] Built target hhsearch-sse3 make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse3.dir/link.d "CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o" -o hhalign-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 78%] Built target hhalign-sse3 make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhconsensus-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse3.dir/link.d "CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o" -o hhconsensus-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 80%] Built target hhconsensus-sse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse3.dir/link.d "CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o" -o a3m_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 83%] Built target a3m_extract-sse3 make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse3.dir/link.d "CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 85%] Built target a3m_reduce-sse3 make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse3.dir/link.d "CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 87%] Built target a3m_database_reduce-sse3 make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-sse3.dir/link.d "CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 89%] Built target a3m_database_extract-sse3 make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_filter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse3.dir/link.d "CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 91%] Built target a3m_database_filter-sse3 make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/cstranslate-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse3.dir/link.d "CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 92%] Built target cstranslate-sse3 make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse3.dir/link.d "CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 94%] Built target hhblits_omp-sse3 make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse3.dir/link.d "CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 96%] Built target hhsearch_omp-sse3 make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse3.dir/link.d "CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 98%] Built target hhalign_omp-sse3 make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_ca3m-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o cd /<>/build_sse3/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse3.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse3.dir/link.d "CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [100%] Built target hhblits_ca3m-sse3 make[3]: Leaving directory '/<>/build_sse3' /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles /<>/build_plain//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_plain' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/x86_64-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_plain' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:53: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 6 has type ‘int64_t’ {aka ‘long int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~~^ ~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld [ 5%] Linking C executable ffindex_apply cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_plain' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_plain' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_plain' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_plain' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_plain' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_plain' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT 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Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_plain' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_plain' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/x86_64-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_plain /<>/build_plain/data /<>/build_plain/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_plain' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_plain/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/context_data.crf.h > /<>/build_plain/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/context_data.crf.h.tmp /<>/build_plain/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_plain/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/context_data.lib.h > /<>/build_plain/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/context_data.lib.h.tmp /<>/build_plain/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_plain/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/cs219.lib.h > /<>/build_plain/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/cs219.lib.h.tmp /<>/build_plain/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_plain' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_plain' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_plain' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_plain' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_plain' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_plain /<>/build_plain/src/cs /<>/build_plain/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_plain/src/cs && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_plain/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/x86_64-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/x86_64-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 69%] Building CXX object src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script 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/<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-plain.dir/link.d "CMakeFiles/hhmake-plain.dir/hhmake.cpp.o" -o hhmake-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 72%] Built target hhmake-plain make -f src/CMakeFiles/hhfilter-plain.dir/build.make src/CMakeFiles/hhfilter-plain.dir/depend make[4]: 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src/CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-plain.dir/link.d "CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o" -o hhfilter-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 74%] Built target hhfilter-plain make -f src/CMakeFiles/hhsearch-plain.dir/build.make src/CMakeFiles/hhsearch-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhsearch-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhsearch-plain.dir/build.make src/CMakeFiles/hhsearch-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 75%] Building CXX object src/CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-plain.dir/link.d "CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o" -o hhsearch-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 76%] Built target hhsearch-plain make -f src/CMakeFiles/hhalign-plain.dir/build.make src/CMakeFiles/hhalign-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhalign-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhalign-plain.dir/build.make src/CMakeFiles/hhalign-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 77%] Building CXX object src/CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-plain.dir/link.d "CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o" -o hhalign-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 78%] Built target hhalign-plain make -f src/CMakeFiles/hhconsensus-plain.dir/build.make src/CMakeFiles/hhconsensus-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhconsensus-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhconsensus-plain.dir/build.make src/CMakeFiles/hhconsensus-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-plain.dir/link.d "CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o" -o hhconsensus-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 80%] Built target hhconsensus-plain make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_plain' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/15/string:51, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ostream:42, from /usr/x86_64-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/x86_64-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_extract-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-plain.dir/link.d "CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o" -o a3m_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 83%] Built target a3m_extract-plain make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make 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--verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-plain.dir/link.d "CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o" -o a3m_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 85%] Built target a3m_reduce-plain make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o.d -o 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-include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-plain.dir/link.d "CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 89%] Built target a3m_database_extract-plain make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_filter-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o cd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-plain.dir/link.d "CMakeFiles/a3m_database_filter-plain.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 91%] Built target a3m_database_filter-plain make -f src/CMakeFiles/cstranslate-plain.dir/build.make src/CMakeFiles/cstranslate-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/cstranslate-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/cstranslate-plain.dir/build.make src/CMakeFiles/cstranslate-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 92%] Building CXX object src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-plain.dir/link.d "CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o" -o cstranslate-plain libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 92%] Built target cstranslate-plain make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-plain.dir/link.d "CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o" -o hhblits_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 94%] Built target hhblits_omp-plain make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhsearch_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-plain.dir/link.d "CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o" -o hhsearch_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 96%] Built target hhsearch_omp-plain make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhalign_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-plain.dir/link.d "CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o" -o hhalign_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 98%] Built target hhalign_omp-plain make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_ca3m-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o cd /<>/build_plain/src && /usr/bin/x86_64-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:970, from /usr/x86_64-linux-gnu/include/c++/15/cstdio:47, from /usr/x86_64-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/x86_64-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/x86_64-linux-gnu/include/c++/15/string:56, from /usr/x86_64-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/x86_64-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/x86_64-linux-gnu/include/c++/15/ios:46, from /usr/x86_64-linux-gnu/include/c++/15/istream:42, from /usr/x86_64-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/x86_64-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-plain.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -mfpmath=sse -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-plain.dir/link.d "CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [100%] Built target hhblits_ca3m-plain make[3]: Leaving directory '/<>/build_plain' /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles 0 make[2]: Leaving directory '/<>/build_plain' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/hhsuite/usr/libexec/hhsuite/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Installing: /<>/debian/tmp/usr/data/context_data.crf -- Installing: /<>/debian/tmp/usr/data/context_data.lib -- Installing: /<>/debian/tmp/usr/data/cs219.lib -- Installing: /<>/debian/tmp/usr/data/do_not_delete -- Installing: /<>/debian/tmp/usr/data/do_not_delete.phr -- Installing: /<>/debian/tmp/usr/data/do_not_delete.pin -- Installing: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx2 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx2 -- Installing: /<>/debian/tmp/usr/scripts/a3m.py -- Installing: /<>/debian/tmp/usr/scripts/addss.pl -- Installing: /<>/debian/tmp/usr/scripts/Align.pm -- Installing: /<>/debian/tmp/usr/scripts/check_a3m.py -- Installing: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Installing: /<>/debian/tmp/usr/scripts/ffindex.py -- Installing: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Installing: /<>/debian/tmp/usr/scripts/hh_reader.py -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Installing: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Installing: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Installing: /<>/debian/tmp/usr/scripts/mergeali.pl -- Installing: /<>/debian/tmp/usr/scripts/multithread.pl -- Installing: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Installing: /<>/debian/tmp/usr/scripts/reformat.pl -- Installing: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Installing: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse4.1 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-ssse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_plain' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_plain' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-plain -- Installing: /<>/debian/tmp/usr/bin/hhmake-plain -- Installing: /<>/debian/tmp/usr/bin/hhfilter-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign-plain -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-plain -- Installing: /<>/debian/tmp/usr/bin/cstranslate-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-plain -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_plain' mkdir -p /<>/debian/hhsuite/usr/bin dh_install -phhsuite debian/bin/simd-dispatch /usr/libexec/hhsuite/ for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter cstranslate ; do dh_install usr/bin/${prog}* /usr/libexec/hhsuite/; done cd /<>/debian/hhsuite/usr/bin \ && for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter; do \ ln -s ../libexec/hhsuite/simd-dispatch ${prog} ; done cd /<>/debian/hhsuite/usr/libexec/hhsuite/bin \ && for prog in cstranslate ; do \ ln -s ../simd-dispatch ${prog} ; done dh_install -phhsuite usr/bin/ffindex_* usr/bin/ make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/hhsuite/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhalign Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/hhsuite/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/hhsuite/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits_omp Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/hhsuite/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhconsensus Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/hhsuite/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhfilter Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/hhsuite/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhmake Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/hhsuite/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhsearch Try `--no-discard-stderr' if option outputs to stderr dh_installman --arch make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-9_amd64.deb'. dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-9_amd64.deb'. dpkg-genbuildinfo --build=any -O../hhsuite_3.3.0+ds-9_amd64.buildinfo dpkg-genchanges --build=any -O../hhsuite_3.3.0+ds-9_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-20T14:17:14Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hhsuite_3.3.0+ds-9_amd64.changes: --------------------------------- Format: 1.8 Date: Fri, 17 Oct 2025 17:36:29 +0200 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 3.3.0+ds-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment Closes: 1112991 Changes: hhsuite (3.3.0+ds-9) unstable; urgency=medium . * Fix build with CMake 4 Closes: #1112991 * d/watch: version=5 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: 245a15dc32e6b3c65d5a901ddd8c5e7e92330555 126869920 hhsuite-dbgsym_3.3.0+ds-9_amd64.deb ae9bc08d295bca191585622a10f09e7c07e827d5 7138 hhsuite_3.3.0+ds-9_amd64.buildinfo 205575dc16accb7860e16f069aaba916983c9074 57476900 hhsuite_3.3.0+ds-9_amd64.deb Checksums-Sha256: fe007021435c0da12c4096da881e57eca914fa1610daf3a7f0df312c110d2d27 126869920 hhsuite-dbgsym_3.3.0+ds-9_amd64.deb 7194a1d9b635b94015daa38a3f6e1be4d208b8c92329a10abb3cf69c68e018cd 7138 hhsuite_3.3.0+ds-9_amd64.buildinfo 7b83be93b81ab43ca81ba478382579db4c0b2db4a6963ac0ec04f5a6fdb38dbc 57476900 hhsuite_3.3.0+ds-9_amd64.deb Files: 2425f703e50fc60e2cf9ff496c40c5dc 126869920 debug optional hhsuite-dbgsym_3.3.0+ds-9_amd64.deb d3b1ebd83a3b6d6d3cf4e3e24cddab0f 7138 science optional hhsuite_3.3.0+ds-9_amd64.buildinfo 2c0f6d140ef06b5b3e271b2150524780 57476900 science optional hhsuite_3.3.0+ds-9_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Architecture: amd64 Version: 3.3.0+ds-9 Checksums-Md5: 2425f703e50fc60e2cf9ff496c40c5dc 126869920 hhsuite-dbgsym_3.3.0+ds-9_amd64.deb 2c0f6d140ef06b5b3e271b2150524780 57476900 hhsuite_3.3.0+ds-9_amd64.deb Checksums-Sha1: 245a15dc32e6b3c65d5a901ddd8c5e7e92330555 126869920 hhsuite-dbgsym_3.3.0+ds-9_amd64.deb 205575dc16accb7860e16f069aaba916983c9074 57476900 hhsuite_3.3.0+ds-9_amd64.deb Checksums-Sha256: fe007021435c0da12c4096da881e57eca914fa1610daf3a7f0df312c110d2d27 126869920 hhsuite-dbgsym_3.3.0+ds-9_amd64.deb 7b83be93b81ab43ca81ba478382579db4c0b2db4a6963ac0ec04f5a6fdb38dbc 57476900 hhsuite_3.3.0+ds-9_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 20 Oct 2025 14:17:08 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-7), binutils-aarch64-linux-gnu (= 2.45-7), binutils-common (= 2.45-7), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 4.1.1+really3.31.6-2), cmake-data (= 4.1.1+really3.31.6-2), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-aarch64-linux-gnu (= 15.2.0-4), cpp-aarch64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.4), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-4), g++-15-aarch64-linux-gnu (= 15.2.0-4), g++-aarch64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-4), gcc-15-aarch64-linux-gnu (= 15.2.0-4), gcc-15-base (= 15.2.0-4), gcc-aarch64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), help2man (= 1.49.3+b1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), imagemagick (= 8:7.1.2.7+dfsg1-1), imagemagick-7-common (= 8:7.1.2.7+dfsg1-1), imagemagick-7.q16 (= 8:7.1.2.7+dfsg1-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-4+b1), libasan8 (= 15.2.0-4), libatomic1 (= 15.2.0-4), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-7), libblkid1 (= 2.41.2-4), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-4), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-7), libctf0 (= 2.45-7), libcurl4t64 (= 8.16.0-4), libdav1d7 (= 1.5.1-1), libdb5.3t64 (= 5.3.28+dfsg2-10), libde265-0 (= 1.0.16-1), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfftw3-double3 (= 3.3.10-2+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libfontconfig1 (= 2.15.0-2.4), libfreetype6 (= 2.13.3+dfsg-1), libgcc-15-dev (= 15.2.0-4), libgcc-s1 (= 15.2.0-4), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libglib2.0-0t64 (= 2.86.0-5), libgmp10 (= 2:6.3.0+dfsg-5), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-4), libgprofng0 (= 2.45-7), libgssapi-krb5-2 (= 1.21.3-5), libheif-plugin-dav1d (= 1.20.2-2+b1), libheif-plugin-libde265 (= 1.20.2-2+b1), libheif1 (= 1.20.2-2+b1), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-4), libidn2-0 (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-4), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-4), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblcms2-2 (= 2.16-2), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5), liblocale-gettext-perl (= 1.07-7+b1), liblqr-1-0 (= 0.4.2-2.1+b2), liblsan0 (= 15.2.0-4), libltdl7 (= 2.5.4-5), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmagickcore-7.q16-10 (= 8:7.1.2.7+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.2.7+dfsg1-1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libopenjp2-7 (= 2.5.3-2.1), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpng16-16t64 (= 1.6.50-1), libproc2-0 (= 2:4.0.4-9), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 15.2.0-4), libraw23t64 (= 0.21.4-2), librhash1 (= 1.4.6-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-7), libsharpyuv0 (= 1.5.0-0.1), libsimde-dev (= 0.8.2-3), libsmartcols1 (= 2.41.2-4), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-4), libstdc++6 (= 15.2.0-4), libsystemd0 (= 258.1-1), libtasn1-6 (= 4.20.0-2), libtiff6 (= 4.7.1-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-5), libtsan2 (= 15.2.0-4), libubsan1 (= 15.2.0-4), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libuv1t64 (= 1.51.0-2), libwebp7 (= 1.5.0-0.1), libwebpdemux2 (= 1.5.0-0.1), libwebpmux3 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxml2-16 (= 2.14.6+dfsg-0.1), libxxhash0 (= 0.8.3-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.12-2), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1760715389" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hhsuite-dbgsym_3.3.0+ds-9_amd64.deb ----------------------------------- new Debian package, version 2.0. size 126869920 bytes: control archive=5196 bytes. 4643 bytes, 12 lines control 11214 bytes, 106 lines md5sums Package: hhsuite-dbgsym Source: hhsuite Version: 3.3.0+ds-9 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 550633 Depends: hhsuite (= 3.3.0+ds-9) Section: debug Priority: optional Description: debug symbols for hhsuite Build-Ids: 06e292e7a2256eecd80e44c479f2cb89d785151a 07b97a9126dbb1bb59d13c116bd2a37a355e8910 0ca476ae807101761b6ee2b31b31d8fefffb4584 0fd7aa91ad5f2ca336b113d865281beed8f4bc73 1566687d8f7b3a9e4aef8ac3bd8d2cb3469ecaec 18559924feabd1ef7b0e2cd88d56b75bbe893b7d 189d9d0b808e5b447b0b5b8bac61c471ace5e8ea 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drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 875304 2025-10-17 15:36 ./usr/lib/debug/.dwz/x86_64-linux-gnu/hhsuite.debug drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite-dbgsym -> hhsuite hhsuite_3.3.0+ds-9_amd64.deb ---------------------------- new Debian package, version 2.0. size 57476900 bytes: control archive=4484 bytes. 1472 bytes, 29 lines control 10398 bytes, 146 lines md5sums Package: hhsuite Version: 3.3.0+ds-9 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 468087 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 14), perl:any, hhsuite-data (= 3.3.0+ds-9), python3 Conflicts: ffindex Built-Using: simde (= 0.8.2-3) Section: science Priority: optional Homepage: https://toolkit.tuebingen.mpg.de/ Description: sensitive protein sequence searching based on HMM-HMM alignment HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). . This package contains HHsearch and HHblits among other programs and utilities. . HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling. . HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments. drwxr-xr-x root/root 0 2025-10-17 15:36 ./ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/bin/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_filter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_reduce -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_reduce -> ../libexec/hhsuite/simd-dispatch -rwxr-xr-x root/root 31216 2025-10-17 15:36 ./usr/bin/ffindex_apply -rwxr-xr-x root/root 31280 2025-10-17 15:36 ./usr/bin/ffindex_build -rwxr-xr-x root/root 27056 2025-10-17 15:36 ./usr/bin/ffindex_from_fasta -rwxr-xr-x root/root 31040 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0 2025-10-17 15:36 ./usr/bin/hhfilter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhmake -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhsearch -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhsearch_omp -> ../libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/lib/hh -> hhsuite drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/data/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete -rw-r--r-- root/root 135 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.phr -rw-r--r-- root/root 112 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.pin -rw-r--r-- root/root 433 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.psq lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/scripts -> ../../share/hhsuite/scripts drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/ -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-avx -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-avx2 -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-plain -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse3 -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse4.1 -rwxr-xr-x root/root 55784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-ssse3 -rwxr-xr-x root/root 63976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-avx -rwxr-xr-x root/root 63976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-avx2 -rwxr-xr-x root/root 59880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-plain -rwxr-xr-x root/root 59880 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15:36 ./usr/libexec/hhsuite/a3m_extract-plain -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse3 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse4.1 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-ssse3 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-avx -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-avx2 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-plain -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse3 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse4.1 -rwxr-xr-x root/root 51608 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-ssse3 drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/bin/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/bin/cstranslate -> ../simd-dispatch -rwxr-xr-x root/root 6281784 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-avx -rwxr-xr-x root/root 6277688 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-avx2 -rwxr-xr-x root/root 6265400 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-plain -rwxr-xr-x root/root 6265400 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse3 -rwxr-xr-x root/root 6277688 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse4.1 -rwxr-xr-x root/root 6265400 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-ssse3 -rwxr-xr-x root/root 8255992 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-avx -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-avx2 -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-plain -rwxr-xr-x root/root 8223224 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse3 -rwxr-xr-x root/root 8255992 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse4.1 -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-ssse3 -rwxr-xr-x root/root 8264184 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-avx -rwxr-xr-x root/root 8235512 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-avx2 -rwxr-xr-x root/root 8231416 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-plain -rwxr-xr-x root/root 8231416 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse3 -rwxr-xr-x root/root 8264184 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse4.1 -rwxr-xr-x root/root 8231416 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-ssse3 -rwxr-xr-x root/root 8206840 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-avx -rwxr-xr-x root/root 8178168 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-avx2 -rwxr-xr-x root/root 8178168 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-plain -rwxr-xr-x root/root 8178168 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse3 -rwxr-xr-x root/root 8206840 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse4.1 -rwxr-xr-x root/root 8178168 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-ssse3 -rwxr-xr-x root/root 8210936 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-avx -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-avx2 -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-plain -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse3 -rwxr-xr-x root/root 8210936 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse4.1 -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-ssse3 -rwxr-xr-x root/root 8215032 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-avx -rwxr-xr-x root/root 8186360 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-avx2 -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-plain -rwxr-xr-x root/root 8182264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse3 -rwxr-xr-x root/root 8215032 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse4.1 -rwxr-xr-x root/root 8186360 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-ssse3 -rwxr-xr-x root/root 7670264 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-avx -rwxr-xr-x root/root 7657976 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-avx2 -rwxr-xr-x root/root 7641592 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-plain -rwxr-xr-x root/root 7641592 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse3 -rwxr-xr-x root/root 7666168 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse4.1 -rwxr-xr-x root/root 7641592 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-ssse3 -rwxr-xr-x root/root 371184 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-avx -rwxr-xr-x root/root 367088 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-avx2 -rwxr-xr-x root/root 358896 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-plain -rwxr-xr-x root/root 358896 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse3 -rwxr-xr-x root/root 367088 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse4.1 -rwxr-xr-x root/root 358896 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-ssse3 -rwxr-xr-x root/root 7645688 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-avx -rwxr-xr-x root/root 7633400 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-avx2 -rwxr-xr-x root/root 7617016 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-plain -rwxr-xr-x root/root 7617016 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse3 -rwxr-xr-x root/root 7641592 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse4.1 -rwxr-xr-x root/root 7617016 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-ssse3 -rwxr-xr-x root/root 8247800 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-avx -rwxr-xr-x root/root 8219128 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-avx2 -rwxr-xr-x root/root 8215032 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-plain -rwxr-xr-x root/root 8215032 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse3 -rwxr-xr-x root/root 8247800 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse4.1 -rwxr-xr-x root/root 8215032 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-ssse3 -rwxr-xr-x root/root 8251896 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-avx -rwxr-xr-x root/root 8223224 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-avx2 -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-plain -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse3 -rwxr-xr-x root/root 8255992 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse4.1 -rwxr-xr-x root/root 8227320 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-ssse3 -rwxr-xr-x root/root 453 2025-10-17 15:36 ./usr/libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/share/doc/hhsuite/README.md.gz -rw-r--r-- root/root 1909 2025-10-17 15:36 ./usr/share/doc/hhsuite/changelog.Debian.gz -rw-r--r-- root/root 20399 2025-10-17 15:36 ./usr/share/doc/hhsuite/copyright drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite/examples/ -rw-r--r-- root/root 32126 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.a3m -rw-r--r-- root/root 57578 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhm -rw-r--r-- root/root 181765 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhr -rw-r--r-- root/root 506 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.seq drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/hhsuite/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/hhsuite/scripts/ -rw-r--r-- root/root 24577 2020-08-16 23:16 ./usr/share/hhsuite/scripts/Align.pm -rw-r--r-- root/root 4710 2020-08-16 23:16 ./usr/share/hhsuite/scripts/HHPaths.pm -rwxr-xr-x root/root 8021 2025-10-17 15:36 ./usr/share/hhsuite/scripts/a3m.py -rwxr-xr-x root/root 31681 2025-10-17 15:36 ./usr/share/hhsuite/scripts/addss.pl -rwxr-xr-x root/root 438 2025-10-17 15:36 ./usr/share/hhsuite/scripts/check_a3m.py -rwxr-xr-x root/root 28735 2025-10-17 15:36 ./usr/share/hhsuite/scripts/cif2fasta.py -rwxr-xr-x root/root 4654 2025-10-17 15:36 ./usr/share/hhsuite/scripts/create_profile_from_hhm.pl -rwxr-xr-x root/root 6815 2025-10-17 15:36 ./usr/share/hhsuite/scripts/create_profile_from_hmmer.pl -rwxr-xr-x root/root 2081 2025-10-17 15:36 ./usr/share/hhsuite/scripts/ffindex.py -rwxr-xr-x root/root 446 2025-10-17 15:36 ./usr/share/hhsuite/scripts/get_a3m_size.py -rwxr-xr-x root/root 7179 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hh_reader.py -rwxr-xr-x root/root 48079 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhmakemodel.pl -rwxr-xr-x root/root 87343 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhmakemodel.py -rwxr-xr-x root/root 16961 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhsuitedb.py -rwxr-xr-x root/root 20214 2020-08-16 23:16 ./usr/share/hhsuite/scripts/mergeali.pl -rwxr-xr-x root/root 5717 2025-10-17 15:36 ./usr/share/hhsuite/scripts/multithread.pl -rwxr-xr-x root/root 40490 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdb2fasta.pl -rwxr-xr-x root/root 13183 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdbfilter.pl -rwxr-xr-x root/root 8648 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdbfilter.py -rwxr-xr-x root/root 28328 2020-08-16 23:16 ./usr/share/hhsuite/scripts/reformat.pl -rwxr-xr-x root/root 14019 2025-10-17 15:36 ./usr/share/hhsuite/scripts/renumberpdb.pl -rwxr-xr-x root/root 3651 2025-10-17 15:36 ./usr/share/hhsuite/scripts/splitfasta.pl drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/man/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhalign.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhblits.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhblits_omp.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhconsensus.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhfilter.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhmake.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhsearch.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1340 B] Get:5 copy:/<>/apt_archive ./ Packages [1419 B] Fetched 3374 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 shared-mime-info t1utils ucf unzip 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 16.9 MB of archives. After this operation, 74.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get:7 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:8 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-4 [362 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libfyaml0 arm64 0.9-2 [194 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 3.0.1-1 [126 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.24-1 [63.2 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.1.1-1 [210 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.1.1-1 [560 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.68-1 [32.8 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.56-2 [84.0 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2 [59.1 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.8-3 [122 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3 [22.9 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-8 [884 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.8-3 [579 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.18.0-1 [3125 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.42 [64.3 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-1 [115 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.71-1 [217 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:47 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:57 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.40-1 [129 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-3 [31.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b5 [97.7 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.85-1 [23.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:77 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-4 [25.6 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:94 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.80-1 [184 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15-3 [37.8 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:117 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.637-1 [41.5 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:130 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.49-1 [64.3 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.31-1 [27.2 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:134 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1 [13.2 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-3 [19.9 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-6 [299 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.904.0+ds-1 [43.6 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.12-3 [60.0 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.3-1 [74.4 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.127.0 [1066 kB] Preconfiguring packages ... Fetched 16.9 MB in 0s (59.4 MB/s) Selecting previously unselected package netbase. (Reading database ... 24624 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.5.4-1_arm64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../004-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../020-gpgconf_2.4.8-3_arm64.deb ... Unpacking gpgconf (2.4.8-3) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../021-libksba8_1.6.7-2+b1_arm64.deb ... Unpacking libksba8:arm64 (1.6.7-2+b1) ... Selecting previously unselected package libnpth0t64:arm64. 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Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../098-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../099-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../100-libio-interactive-perl_1.027-1_all.deb ... Unpacking libio-interactive-perl (1.027-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../101-libipc-run3-perl_0.049-1_all.deb ... Unpacking libipc-run3-perl (0.049-1) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../102-libjson-maybexs-perl_1.004008-1_all.deb ... Unpacking libjson-maybexs-perl (1.004008-1) ... Selecting previously unselected package liblist-compare-perl. 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Selecting previously unselected package libmouse-perl:arm64. Preparing to unpack .../115-libmouse-perl_2.5.11-1+b1_arm64.deb ... Unpacking libmouse-perl:arm64 (2.5.11-1+b1) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../116-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../117-libsub-identify-perl_0.14-3+b3_arm64.deb ... Unpacking libsub-identify-perl (0.14-3+b3) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../118-libsub-name-perl_0.28-1_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.28-1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../119-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../120-libpath-tiny-perl_0.148-1_all.deb ... Unpacking libpath-tiny-perl (0.148-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../121-libperlio-gzip-perl_0.20-1+b4_arm64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b4) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../122-libperlio-utf8-strict-perl_0.010-1+b3_arm64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1+b3) ... Selecting previously unselected package libproc-processtable-perl:arm64. Preparing to unpack .../123-libproc-processtable-perl_0.637-1_arm64.deb ... Unpacking libproc-processtable-perl:arm64 (0.637-1) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../124-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. 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Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libnpth0t64:arm64 (1.8-3) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libgpg-error0:arm64 (1.56-2) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxmlb2:arm64 (0.3.24-1) ... Setting up libdevel-size-perl (0.85-1) ... Setting up unzip (6.0-29) ... Setting up libsqlite3-0:arm64 (3.46.1-8) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.11.2-2) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... 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Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libstemmer0d:arm64 (3.0.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.4-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.3-3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2.1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libcurl3t64-gnutls:arm64 (8.16.0-4) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libappstream5:arm64 (1.1.1-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up appstream (1.1.1-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.4.8-3) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up gpg (2.4.8-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.80-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.127.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 3915 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 70 Job: hhsuite_3.3.0+ds-9 Lintian: pass Machine Architecture: arm64 Package: hhsuite Package-Time: 4031 Source-Version: 3.3.0+ds-9 Space: n/a Status: successful Version: 3.3.0+ds-9 -------------------------------------------------------------------------------- Finished at 2025-10-20T14:17:14Z Build needed 01:07:11, no disk space