sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | hhsuite 3.3.0+ds-9 (i386) Fri, 24 Oct 2025 06:25:46 +0000 | +==============================================================================+ Package: hhsuite Version: 3.3.0+ds-9 Source Version: 3.3.0+ds-9 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.tGfF3p4XPE... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-P0cJJL/resolver-mg9czx' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [207 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.2 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9949 kB] Fetched 31.5 MB in 8s (4169 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils binutils binutils-aarch64-linux-gnu binutils-common cpp-15 cpp-15-aarch64-linux-gnu diffutils g++-15 g++-15-aarch64-linux-gnu gcc-15 gcc-15-aarch64-linux-gnu gcc-15-base libapt-pkg7.0 libasan8 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0 libgcc-15-dev libgcc-s1 libgomp1 libgprofng0 libhwasan0 libitm1 liblsan0 libselinux1 libsframe2 libstdc++-15-dev libstdc++6 libtsan2 libubsan1 login.defs sysvinit-utils 35 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 64.5 MB of archives. After this operation, 910 MB disk space will be freed. Get:1 http://mirror.einval.org/debian unstable/main arm64 diffutils arm64 1:3.12-1 [397 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 15.2.0-7 [41.3 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 gcc-15-base arm64 15.2.0-7 [53.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-7 [53.5 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 15.2.0-7 [126 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 15.2.0-7 [24.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 15.2.0-7 [9940 B] Get:8 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 15.2.0-7 [2601 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 15.2.0-7 [1194 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 15.2.0-7 [2401 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 15.2.0-7 [1064 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 15.2.0-7 [1480 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 gcc-15 arm64 15.2.0-7 [514 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 g++-15 arm64 15.2.0-7 [24.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-7 [11.1 MB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-7 [2346 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-7 [2373 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-7 [19.6 MB] Get:19 http://mirror.einval.org/debian unstable/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-7 [10.1 MB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-15 arm64 15.2.0-7 [1272 B] Get:21 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 15.2.0-7 [647 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libctf-nobfd0 arm64 2.45-8 [154 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libctf0 arm64 2.45-8 [85.7 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libsframe2 arm64 2.45-8 [79.7 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libgprofng0 arm64 2.45-8 [670 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libbinutils arm64 2.45-8 [677 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 binutils-common arm64 2.45-8 [2558 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 binutils arm64 2.45-8 [263 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 binutils-aarch64-linux-gnu arm64 2.45-8 [847 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg7.0 arm64 3.1.9 [1035 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 apt arm64 3.1.9 [1380 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 apt-utils arm64 3.1.9 [322 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 sysvinit-utils arm64 3.15-5 [34.8 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libselinux1 arm64 3.9-2 [80.1 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 login.defs all 1:4.18.0-2 [211 kB] Fetched 64.5 MB in 1s (97.9 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4794 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (dsc) [2153 B] Get:2 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (tar) [4775 kB] Get:3 http://mirror.einval.org/debian unstable/main hhsuite 3.3.0+ds-9 (diff) [16.9 kB] Fetched 4794 kB in 0s (33.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hhsuite-P0cJJL/hhsuite-3.3.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-P0cJJL' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [755 B] Get:5 copy:/<>/apt_archive ./ Packages [797 B] Fetched 2161 B in 0s (98.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-15-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-i686-linux-gnu g++-i686-linux-gnu gcc-15-base:i386 gcc-15-cross-base gcc-15-i686-linux-gnu gcc-15-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2 libcrypt-dev:i386 libcrypt1:i386 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libffi8 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-15-dev:i386 libgcc-15-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0t64 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libidn2-0 libitm1:i386 libitm1-i386-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:i386 libquadmath0-i386-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-15-dev:i386 libstdc++-15-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtiff6 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 linux-libc-dev-i386-cross m4 man-db po-debconf procps sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff imagemagick-7-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig libraw-bin xdg-utils lrzip glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libfftw3-bin libfftw3-dev low-memory-monitor gnutls-bin krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libstdc++-15-doc:i386 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libmagickcore-7.q16-10-extra ghostscript netpbm libidn2-0:i386 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-15-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-i686-linux-gnu g++-i686-linux-gnu gcc-15-base:i386 gcc-15-cross-base gcc-15-i686-linux-gnu gcc-15-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 intltool-debian libarchive-zip-perl libarchive13t64 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2 libcrypt-dev:i386 libcrypt1:i386 libcurl4t64 libdav1d7 libde265-0 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfakeroot libffi8 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-15-dev:i386 libgcc-15-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libglib2.0-0t64 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libidn2-0 libitm1:i386 libitm1-i386-cross libjbig0 libjpeg62-turbo libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap2 liblerc4 liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1t64 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpipeline1 libpng16-16t64 libproc2-0 libpsl5t64 libquadmath0:i386 libquadmath0-i386-cross libraw23t64 librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsimde-dev libssh2-1t64 libstdc++-15-dev:i386 libstdc++-15-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtiff6 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 linux-libc-dev-i386-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:i386 sensible-utils 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 339 MB of archives. After this operation, 1467 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.20.2-2+b1 [18.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libde265-0 arm64 1.0.16-1 [153 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.20.2-2+b1 [16.9 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libheif1 arm64 1.20.2-2+b1 [504 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.1-1 [1436 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b2 [27.0 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-7 [415 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libraw23t64 arm64 0.21.4-2 [371 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7-common all 8:7.1.2.7+dfsg1-1 [69.2 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libmagickcore-7.q16-10 arm64 8:7.1.2.7+dfsg1-1 [1623 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libmagickwand-7.q16-10 arm64 8:7.1.2.7+dfsg1-1 [268 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get:69 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc2-1 [369 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get:89 http://mirror.einval.org/debian unstable/main arm64 gcc-15-i686-linux-gnu-base arm64 15.2.0-4cross1 [53.0 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 cpp-15-i686-linux-gnu arm64 15.2.0-4cross1 [83.7 MB] Get:91 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:15.2.0-4 [5288 B] Get:92 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.45-8 [1508 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 gcc-15-cross-base all 15.2.0-4cross1 [48.4 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.41-11cross1 [1424 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 15.2.0-4cross1 [87.0 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 15.2.0-4cross1 [139 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 15.2.0-4cross1 [27.5 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 15.2.0-4cross1 [7492 B] Get:99 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 15.2.0-4cross1 [2642 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 15.2.0-4cross1 [733 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 15.2.0-4cross1 [1080 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 15.2.0-4cross1 [229 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libgcc-15-dev-i386-cross all 15.2.0-4cross1 [2618 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 gcc-15-i686-linux-gnu arm64 15.2.0-4cross1 [92.1 MB] Get:105 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:15.2.0-4 [1444 B] Get:106 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.12.38-1cross1 [2470 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.41-11cross1 [1806 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libstdc++-15-dev-i386-cross all 15.2.0-4cross1 [2488 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 g++-15-i686-linux-gnu arm64 15.2.0-4cross1 [89.1 MB] Get:110 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:15.2.0-4 [1192 B] Get:111 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:112 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:118 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.37.1.2-1 [29.7 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.37.1.2-1 [75.4 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 gcc-15-base i386 15.2.0-7 [53.3 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 imagemagick-7.q16 arm64 8:7.1.2.7+dfsg1-1 [728 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 imagemagick arm64 8:7.1.2.7+dfsg1-1 [21.8 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 15.2.0-7 [87.0 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.41-12 [2720 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 15.2.0-7 [2651 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 15.2.0-7 [7744 B] Get:135 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Get:136 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.41-12 [1809 kB] Get:138 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 15.2.0-7 [142 kB] Get:139 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 15.2.0-7 [28.0 kB] Get:140 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 15.2.0-7 [781 kB] Get:141 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 15.2.0-7 [1081 kB] Get:142 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 15.2.0-7 [229 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 libgcc-15-dev i386 15.2.0-7 [2625 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Get:145 http://mirror.einval.org/debian unstable/main i386 libstdc++-15-dev i386 15.2.0-7 [2507 kB] Preconfiguring packages ... Fetched 339 MB in 4s (89.0 MB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 12017 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../001-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../002-libfftw3-double3_3.3.10-2+b1_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../003-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../004-libpng16-16t64_1.6.50-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.50-1) ... 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Setting up hicolor-icon-theme (0.18-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up imagemagick-7-common (8:7.1.2.7+dfsg1-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up binutils-i686-linux-gnu (2.45-8) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libfakeroot:arm64 (1.37.1.2-1) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up linux-libc-dev-i386-cross (6.12.38-1cross1) ... Setting up autotools-dev (20240727.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.50-1) ... Setting up gcc-15-i686-linux-gnu-base:arm64 (15.2.0-4cross1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:arm64 (6.5+20250216-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libltdl7:arm64 (2.5.4-7) ... Setting up libfftw3-double3:arm64 (3.3.10-2+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libraw23t64:arm64 (0.21.4-2) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:arm64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:arm64 (4.7.1-1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libc6-i386-cross (2.41-11cross1) ... Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up gcc-15-cross-base (15.2.0-4cross1) ... Setting up libde265-0:arm64 (1.0.16-1) ... Setting up gcc-15-base:i386 (15.2.0-7) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up libquadmath0-i386-cross (15.2.0-4cross1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libatomic1-i386-cross (15.2.0-4cross1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up cpp-15-i686-linux-gnu (15.2.0-4cross1) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libgomp1-i386-cross (15.2.0-4cross1) ... Setting up libc6-dev-i386-cross (2.41-11cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up libgcc-s1-i386-cross (15.2.0-4cross1) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:arm64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libitm1-i386-cross (15.2.0-4cross1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b2) ... Setting up groff-base (1.23.0-9) ... Setting up cpp-i686-linux-gnu (4:15.2.0-4) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasan8-i386-cross (15.2.0-4cross1) ... Setting up libstdc++6-i386-cross (15.2.0-4cross1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up libubsan1-i386-cross (15.2.0-4cross1) ... Setting up libgcc-15-dev-i386-cross (15.2.0-4cross1) ... Setting up libstdc++-15-dev-i386-cross (15.2.0-4cross1) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up gcc-15-i686-linux-gnu (15.2.0-4cross1) ... Setting up g++-15-i686-linux-gnu (15.2.0-4cross1) ... Setting up gcc-i686-linux-gnu (4:15.2.0-4) ... Setting up g++-i686-linux-gnu (4:15.2.0-4) ... Setting up crossbuild-essential-i386 (12.12) ... Setting up libgcc-s1:i386 (15.2.0-7) ... Setting up libc6:i386 (2.41-12) ... Setting up libasan8:i386 (15.2.0-7) ... Setting up libheif-plugin-dav1d:arm64 (1.20.2-2+b1) ... Setting up libstdc++6:i386 (15.2.0-7) ... Setting up libitm1:i386 (15.2.0-7) ... Setting up libheif-plugin-libde265:arm64 (1.20.2-2+b1) ... Setting up libheif1:arm64 (1.20.2-2+b1) ... Setting up libcrypt1:i386 (1:4.4.38-1) ... Setting up libgomp1:i386 (15.2.0-7) ... Setting up libquadmath0:i386 (15.2.0-7) ... Setting up libatomic1:i386 (15.2.0-7) ... Setting up libmagickcore-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Setting up libubsan1:i386 (15.2.0-7) ... Setting up libcrypt-dev:i386 (1:4.4.38-1) ... Setting up libc6-dev:i386 (2.41-12) ... Setting up libgcc-15-dev:i386 (15.2.0-7) ... Setting up libmagickwand-7.q16-10:arm64 (8:7.1.2.7+dfsg1-1) ... Setting up libstdc++-15-dev:i386 (15.2.0-7) ... Setting up imagemagick-7.q16 (8:7.1.2.7+dfsg1-1) ... update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode update-alternatives: warning: update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode Setting up imagemagick (8:7.1.2.7+dfsg1-1) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-37-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) arm64 (aarch64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-15_15.2.0-7 gcc-15_15.2.0-7 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-7 libstdc++-15-dev-i386-cross_15.2.0-4cross1 libstdc++6_15.2.0-7 libstdc++6-i386-cross_15.2.0-4cross1 linux-libc-dev_6.16.12-2 Package versions: apt_3.1.9 apt-utils_3.1.9 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-8 binutils-aarch64-linux-gnu_2.45-8 binutils-common_2.45-8 binutils-i686-linux-gnu_2.45-8 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-7 cpp-15-aarch64-linux-gnu_15.2.0-7 cpp-15-i686-linux-gnu_15.2.0-4cross1 cpp-aarch64-linux-gnu_4:15.2.0-4 cpp-i686-linux-gnu_4:15.2.0-4 crossbuild-essential-i386_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig-config_2.15.0-2.4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-15_15.2.0-7 g++-15-aarch64-linux-gnu_15.2.0-7 g++-15-i686-linux-gnu_15.2.0-4cross1 g++-aarch64-linux-gnu_4:15.2.0-4 g++-i686-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-7 gcc-15-aarch64-linux-gnu_15.2.0-7 gcc-15-base_15.2.0-7 gcc-15-cross-base_15.2.0-4cross1 gcc-15-i686-linux-gnu_15.2.0-4cross1 gcc-15-i686-linux-gnu-base_15.2.0-4cross1 gcc-aarch64-linux-gnu_4:15.2.0-4 gcc-i686-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 help2man_1.49.3+b1 hicolor-icon-theme_0.18-2 hostname_3.25 imagemagick_8:7.1.2.7+dfsg1-1 imagemagick-7-common_8:7.1.2.7+dfsg1-1 imagemagick-7.q16_8:7.1.2.7+dfsg1-1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.9 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-7 libasan8-i386-cross_15.2.0-4cross1 libatomic1_15.2.0-7 libatomic1-i386-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libc6-dev-i386-cross_2.41-11cross1 libc6-i386-cross_2.41-11cross1 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libhwasan0_15.2.0-7 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-7 libitm1-i386-cross_15.2.0-4cross1 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libjsoncpp26_1.9.6-4 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblcms2-2_2.16-2 libldap2_2.6.10+dfsg-1 liblerc4_4.0.0+ds-5 liblocale-gettext-perl_1.07-7+b1 liblqr-1-0_0.4.2-2.1+b2 liblsan0_15.2.0-7 libltdl7_2.5.4-7 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmagickcore-7.q16-10_8:7.1.2.7+dfsg1-1 libmagickwand-7.q16-10_8:7.1.2.7+dfsg1-1 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libopenjp2-7_2.5.3-2.1 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpng16-16t64_1.6.50-1 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libquadmath0_15.2.0-7 libquadmath0-i386-cross_15.2.0-4cross1 libraw23t64_0.21.4-2 librhash1_1.4.6-1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-2 libsframe2_2.45-8 libsharpyuv0_1.5.0-0.1 libsimde-dev_0.8.2-3 libsmartcols1_2.41.2-4 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-7 libstdc++-15-dev-i386-cross_15.2.0-4cross1 libstdc++6_15.2.0-7 libstdc++6-i386-cross_15.2.0-4cross1 libsystemd0_258.1-1 libtasn1-6_4.20.0-2 libtiff6_4.7.1-1 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libtsan2_15.2.0-7 libubsan1_15.2.0-7 libubsan1-i386-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258.1-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libwebp7_1.5.0-0.1 libwebpdemux2_1.5.0-0.1 libwebpmux3_1.5.0-0.1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libxau6_1:1.0.11-1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.12-2 linux-libc-dev-i386-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.15-5 tar_1.35+dfsg-3.1 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hhsuite Binary: hhsuite, hhsuite-data Architecture: any all Version: 3.3.0+ds-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Sascha Steinbiss , Homepage: https://toolkit.tuebingen.mpg.de/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libsimde-dev, cmake, imagemagick, help2man Package-List: hhsuite deb science optional arch=any hhsuite-data deb science optional arch=all Checksums-Sha1: d90462ba593366296d8916e184b42325caa4201b 4775072 hhsuite_3.3.0+ds.orig.tar.xz 128e4d8b43032a85c68321b4a4661e17c1f23044 16904 hhsuite_3.3.0+ds-9.debian.tar.xz Checksums-Sha256: a81037f2e2a4801f1a42f5aa5939334fe038053d05ceabdc0899fefb8cc00a44 4775072 hhsuite_3.3.0+ds.orig.tar.xz 930c7195042d4c83975b99039a4df4904041a557a8d142f38dcc94f4ecc3f900 16904 hhsuite_3.3.0+ds-9.debian.tar.xz Files: d01293f2b8337f9b914b30976c2a87e9 4775072 hhsuite_3.3.0+ds.orig.tar.xz 4bb89a0a1a1f74616d3a20353441f119 16904 hhsuite_3.3.0+ds-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjyZMkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGUng/8DARYxNCdXH2u7niHsiA+3O/aP9vlylHN nHOhDi1BU+CDGNYwKls9rRqbY2vsPqe/JagvsbBqLDOqY62TC0j7/pY+5MK8ZdcB PumSfXSbbaA4FsOOxjlInYXa1HrXO9n+NtfAXuFQ9GGZmxRtVEytKcVZ3XDF5lA7 6YpsPCuBR9cMclyE0bfLEwM5ALZJKi4w4KSB90oRQOOPfti1TQSc3GKz+ydAqxdc MmC+Uhe2mF/TYidVBRtm8bd2FBEVgYuhIr/at5kwgb7UOrdempVKG3ewvTmkdCWW JtIc/XkO1bHDmY2DSv2gN+7EHGsWwdquQu3m/Lc1sMKv6/qaFULSZm2Ja4NtWD6y iMtJgD/Js467eN6uDOBCNasJg+3fSHRNtkWXcYa1WEKm4UYHYhBYC1jKGKjwR5wG KcT/sTWAWPZTB9Q3fa7xbCz57w5V1z7PhjdqXIHsYqn119zh0bR/KmRJpQiRbQFK C4zPbBH20wqD5T+/wOVUYooYDU1YHiKBXTiK3VXJz/qPLHP+XyIUwam1mR+s+pPf Bs4RMJ4g8YIZSyxWtBRCkwLPAdn9sxBfqVUufE/7o7be8q/R1vWKZT13nIHtV4AS /q4P0CJZbSVihhlvKrFnZi2xhkwmzws3uVViq3DSnsdXKMwyhLvFEIQ2k0hetwJu TpJWe3iaTro= =Uxj1 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./hhsuite_3.3.0+ds-9.dsc: no acceptable signature found dpkg-source: info: extracting hhsuite in /<> dpkg-source: info: unpacking hhsuite_3.3.0+ds.orig.tar.xz dpkg-source: info: unpacking hhsuite_3.3.0+ds-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_without_mpi dpkg-source: info: applying perlscript_uselib dpkg-source: info: applying perl_interpreter dpkg-source: info: applying drop-fmemopen.h.patch dpkg-source: info: applying python3 dpkg-source: info: applying ppc64el.patch dpkg-source: info: applying exe_suffix dpkg-source: info: applying gcc-13.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.3.0+ds-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 build-* mybuild find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; \ done cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx2 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.5s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx2 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-avx -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.3s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_avx cd build_sse4.1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse4.1 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse4.1 cd build_ssse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-ssse3 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_ssse3 cd build_sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse3 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.2s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse3 export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd build_plain && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-plain -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.4s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_plain for SIMD in sse2 sse ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 ; \ done cd build_sse2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse2 -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse2 cd build_sse && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DEXE_SUFFIX=-sse -DNATIVE_ARCH=0 -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU CMake Deprecation Warning at lib/ffindex/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for fmemopen -- Looking for fmemopen - found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- xxd not found, using xxdi.pl instead CMake Warning at src/CMakeLists.txt:21 (message): CPU without native SIMD instructions. Performance will be bad. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Configuring done (6.4s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build_sse make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_build --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles /<>/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_avx2' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx2' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx2' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_avx2' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx2' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx2' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_avx2' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_avx2' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx2' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx2 /<>/build_avx2/lib/ffindex/src /<>/build_avx2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx2' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx2' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx2 /<>/build_avx2/data /<>/build_avx2/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx2' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx2/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.crf.h > /<>/build_avx2/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.crf.h.tmp /<>/build_avx2/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx2/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/context_data.lib.h > /<>/build_avx2/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/context_data.lib.h.tmp /<>/build_avx2/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx2/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx2/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx2/generated/cs219.lib.h > /<>/build_avx2/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx2/generated/cs219.lib.h.tmp /<>/build_avx2/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx2' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx2' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx2' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx2' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx2 /<>/build_avx2/src/cs /<>/build_avx2/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx2/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx2' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits-avx2.dir/build.make src/CMakeFiles/hhblits-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-avx2.dir/link.d "CMakeFiles/hhblits-avx2.dir/hhblits_app.cpp.o" -o hhblits-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 70%] Built target hhblits-avx2 make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhmake-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhmake-avx2.dir/build.make src/CMakeFiles/hhmake-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-avx2.dir/link.d "CMakeFiles/hhmake-avx2.dir/hhmake.cpp.o" -o hhmake-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 72%] Built target hhmake-avx2 make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhfilter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhfilter-avx2.dir/build.make src/CMakeFiles/hhfilter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-avx2.dir/link.d "CMakeFiles/hhfilter-avx2.dir/hhfilter.cpp.o" -o hhfilter-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 74%] Built target hhfilter-avx2 make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch-avx2.dir/build.make src/CMakeFiles/hhsearch-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-avx2.dir/link.d "CMakeFiles/hhsearch-avx2.dir/hhblits_app.cpp.o" -o hhsearch-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 76%] Built target hhsearch-avx2 make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign-avx2.dir/build.make src/CMakeFiles/hhalign-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-avx2.dir/link.d "CMakeFiles/hhalign-avx2.dir/hhblits_app.cpp.o" -o hhalign-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 78%] Built target hhalign-avx2 make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhconsensus-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhconsensus-avx2.dir/build.make src/CMakeFiles/hhconsensus-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-avx2.dir/link.d "CMakeFiles/hhconsensus-avx2.dir/hhconsensus.cpp.o" -o hhconsensus-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 80%] Built target hhconsensus-avx2 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx2' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx2/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_extract-avx2.dir/build.make src/CMakeFiles/a3m_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-avx2.dir/link.d "CMakeFiles/a3m_extract-avx2.dir/a3m_extract.cpp.o" -o a3m_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 83%] Built target a3m_extract-avx2 make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_reduce-avx2.dir/build.make src/CMakeFiles/a3m_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-avx2.dir/link.d "CMakeFiles/a3m_reduce-avx2.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 85%] Built target a3m_reduce-avx2 make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_reduce-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_reduce-avx2.dir/build.make src/CMakeFiles/a3m_database_reduce-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-avx2.dir/link.d "CMakeFiles/a3m_database_reduce-avx2.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 87%] Built target a3m_database_reduce-avx2 make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_extract-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_extract-avx2.dir/build.make src/CMakeFiles/a3m_database_extract-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-avx2.dir/link.d "CMakeFiles/a3m_database_extract-avx2.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 89%] Built target a3m_database_extract-avx2 make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/a3m_database_filter-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/a3m_database_filter-avx2.dir/build.make src/CMakeFiles/a3m_database_filter-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-avx2.dir/link.d "CMakeFiles/a3m_database_filter-avx2.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-avx2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx2' [ 91%] Built target a3m_database_filter-avx2 make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/cstranslate-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/cstranslate-avx2.dir/build.make src/CMakeFiles/cstranslate-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-avx2.dir/link.d "CMakeFiles/cstranslate-avx2.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx2 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 92%] Built target cstranslate-avx2 make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_omp-avx2.dir/build.make src/CMakeFiles/hhblits_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-avx2.dir/link.d "CMakeFiles/hhblits_omp-avx2.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 94%] Built target hhblits_omp-avx2 make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhsearch_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhsearch_omp-avx2.dir/build.make src/CMakeFiles/hhsearch_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-avx2.dir/link.d "CMakeFiles/hhsearch_omp-avx2.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 96%] Built target hhsearch_omp-avx2 make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhalign_omp-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhalign_omp-avx2.dir/build.make src/CMakeFiles/hhalign_omp-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-avx2.dir/link.d "CMakeFiles/hhalign_omp-avx2.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [ 98%] Built target hhalign_omp-avx2 make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/depend make[4]: Entering directory '/<>/build_avx2' cd /<>/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx2 /<>/build_avx2/src /<>/build_avx2/src/CMakeFiles/hhblits_ca3m-avx2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx2' make -f src/CMakeFiles/hhblits_ca3m-avx2.dir/build.make src/CMakeFiles/hhblits_ca3m-avx2.dir/build make[4]: Entering directory '/<>/build_avx2' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o cd /<>/build_avx2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx2 cd /<>/build_avx2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-avx2.dir/link.d "CMakeFiles/hhblits_ca3m-avx2.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx2' [100%] Built target hhblits_ca3m-avx2 make[3]: Leaving directory '/<>/build_avx2' /usr/bin/cmake -E cmake_progress_start /<>/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles /<>/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_avx' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_avx' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_avx' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_avx' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_avx' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_avx' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_avx' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_avx' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_avx' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_avx /<>/build_avx/lib/ffindex/src /<>/build_avx/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_avx' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_avx/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_avx/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_avx' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_avx /<>/build_avx/data /<>/build_avx/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_avx' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_avx/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.crf.h > /<>/build_avx/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.crf.h.tmp /<>/build_avx/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_avx/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/context_data.lib.h > /<>/build_avx/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/context_data.lib.h.tmp /<>/build_avx/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_avx/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_avx/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_avx/generated/cs219.lib.h > /<>/build_avx/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_avx/generated/cs219.lib.h.tmp /<>/build_avx/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_avx' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_avx' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_avx' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_avx' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_avx /<>/build_avx/src/cs /<>/build_avx/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_avx/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_avx/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_avx' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_avx' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits-avx.dir/build.make src/CMakeFiles/hhblits-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 69%] Building CXX object src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-avx.dir/link.d "CMakeFiles/hhblits-avx.dir/hhblits_app.cpp.o" -o hhblits-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 70%] Built target hhblits-avx make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhmake-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhmake-avx.dir/build.make src/CMakeFiles/hhmake-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 71%] Building CXX object src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-avx.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-avx.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-avx.dir/link.d "CMakeFiles/hhmake-avx.dir/hhmake.cpp.o" -o hhmake-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 72%] Built target hhmake-avx make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhfilter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhfilter-avx.dir/build.make src/CMakeFiles/hhfilter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 73%] Building CXX object src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-avx.dir/link.d "CMakeFiles/hhfilter-avx.dir/hhfilter.cpp.o" -o hhfilter-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 74%] Built target hhfilter-avx make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch-avx.dir/build.make src/CMakeFiles/hhsearch-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 75%] Building CXX object src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-avx.dir/link.d "CMakeFiles/hhsearch-avx.dir/hhblits_app.cpp.o" -o hhsearch-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 76%] Built target hhsearch-avx make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign-avx.dir/build.make src/CMakeFiles/hhalign-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 77%] Building CXX object src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-avx.dir/link.d "CMakeFiles/hhalign-avx.dir/hhblits_app.cpp.o" -o hhalign-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 78%] Built target hhalign-avx make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhconsensus-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhconsensus-avx.dir/build.make src/CMakeFiles/hhconsensus-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-avx.dir/link.d "CMakeFiles/hhconsensus-avx.dir/hhconsensus.cpp.o" -o hhconsensus-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 80%] Built target hhconsensus-avx make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_avx' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_avx/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_extract-avx.dir/build.make src/CMakeFiles/a3m_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-avx.dir/link.d "CMakeFiles/a3m_extract-avx.dir/a3m_extract.cpp.o" -o a3m_extract-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 83%] Built target a3m_extract-avx make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_reduce-avx.dir/build.make src/CMakeFiles/a3m_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-avx.dir/link.d "CMakeFiles/a3m_reduce-avx.dir/a3m_reduce.cpp.o" -o a3m_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 85%] Built target a3m_reduce-avx make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_reduce-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_reduce-avx.dir/build.make src/CMakeFiles/a3m_database_reduce-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-avx.dir/link.d "CMakeFiles/a3m_database_reduce-avx.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-avx ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_avx' [ 87%] Built target a3m_database_reduce-avx make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/a3m_database_extract-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_extract-avx.dir/build.make src/CMakeFiles/a3m_database_extract-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-avx.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script 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/<>/build_avx/src/CMakeFiles/a3m_database_filter-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/a3m_database_filter-avx.dir/build.make src/CMakeFiles/a3m_database_filter-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-avx.dir/a3m_database_filter.cpp.o.d -o 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'/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/cstranslate-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/cstranslate-avx.dir/build.make src/CMakeFiles/cstranslate-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 92%] Building CXX object src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-avx.dir/link.d "CMakeFiles/cstranslate-avx.dir/cs/cstranslate_app.cc.o" -o cstranslate-avx libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 92%] Built target cstranslate-avx make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_omp-avx.dir/build.make src/CMakeFiles/hhblits_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-avx.dir/link.d "CMakeFiles/hhblits_omp-avx.dir/hhblits_omp.cpp.o" -o hhblits_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 94%] Built target hhblits_omp-avx make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhsearch_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhsearch_omp-avx.dir/build.make src/CMakeFiles/hhsearch_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-avx.dir/link.d "CMakeFiles/hhsearch_omp-avx.dir/hhblits_omp.cpp.o" -o hhsearch_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 96%] Built target hhsearch_omp-avx make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhalign_omp-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhalign_omp-avx.dir/build.make src/CMakeFiles/hhalign_omp-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-avx.dir/link.d "CMakeFiles/hhalign_omp-avx.dir/hhblits_omp.cpp.o" -o hhalign_omp-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [ 98%] Built target hhalign_omp-avx make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/depend make[4]: Entering directory '/<>/build_avx' cd /<>/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_avx /<>/build_avx/src /<>/build_avx/src/CMakeFiles/hhblits_ca3m-avx.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_avx' make -f src/CMakeFiles/hhblits_ca3m-avx.dir/build.make src/CMakeFiles/hhblits_ca3m-avx.dir/build make[4]: Entering directory '/<>/build_avx' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o cd /<>/build_avx/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_avx/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_avx/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-avx cd /<>/build_avx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-avx.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-avx.dir/link.d "CMakeFiles/hhblits_ca3m-avx.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-avx libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_avx' [100%] Built target hhblits_ca3m-avx make[3]: Leaving directory '/<>/build_avx' /usr/bin/cmake -E cmake_progress_start /<>/build_avx/CMakeFiles 0 make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles /<>/build_sse4.1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse4.1 /<>/build_sse4.1/lib/ffindex/src /<>/build_sse4.1/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse4.1/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse4.1' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse4.1 /<>/build_sse4.1/data /<>/build_sse4.1/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse4.1/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.crf.h > /<>/build_sse4.1/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.crf.h.tmp /<>/build_sse4.1/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse4.1/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/context_data.lib.h > /<>/build_sse4.1/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/context_data.lib.h.tmp /<>/build_sse4.1/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse4.1/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse4.1/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse4.1/generated/cs219.lib.h > /<>/build_sse4.1/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse4.1/generated/cs219.lib.h.tmp /<>/build_sse4.1/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse4.1' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse4.1' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse4.1 /<>/build_sse4.1/src/cs /<>/build_sse4.1/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse4.1/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits-sse4.1.dir/build.make src/CMakeFiles/hhblits-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse4.1.dir/link.d "CMakeFiles/hhblits-sse4.1.dir/hhblits_app.cpp.o" -o hhblits-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 70%] Built target hhblits-sse4.1 make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhmake-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhmake-sse4.1.dir/build.make src/CMakeFiles/hhmake-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse4.1.dir/link.d "CMakeFiles/hhmake-sse4.1.dir/hhmake.cpp.o" -o hhmake-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 72%] Built target hhmake-sse4.1 make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhfilter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhfilter-sse4.1.dir/build.make src/CMakeFiles/hhfilter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse4.1.dir/link.d "CMakeFiles/hhfilter-sse4.1.dir/hhfilter.cpp.o" -o hhfilter-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 74%] Built target hhfilter-sse4.1 make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch-sse4.1.dir/build.make src/CMakeFiles/hhsearch-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse4.1.dir/link.d "CMakeFiles/hhsearch-sse4.1.dir/hhblits_app.cpp.o" -o hhsearch-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 76%] Built target hhsearch-sse4.1 make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign-sse4.1.dir/build.make src/CMakeFiles/hhalign-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse4.1.dir/link.d "CMakeFiles/hhalign-sse4.1.dir/hhblits_app.cpp.o" -o hhalign-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 78%] Built target hhalign-sse4.1 make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhconsensus-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhconsensus-sse4.1.dir/build.make src/CMakeFiles/hhconsensus-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse4.1.dir/link.d "CMakeFiles/hhconsensus-sse4.1.dir/hhconsensus.cpp.o" -o hhconsensus-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 80%] Built target hhconsensus-sse4.1 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse4.1/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse4.1.dir/link.d "CMakeFiles/a3m_extract-sse4.1.dir/a3m_extract.cpp.o" -o a3m_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 83%] Built target a3m_extract-sse4.1 make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse4.1.dir/link.d "CMakeFiles/a3m_reduce-sse4.1.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 85%] Built target a3m_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_reduce-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build.make src/CMakeFiles/a3m_database_reduce-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse4.1.dir/link.d "CMakeFiles/a3m_database_reduce-sse4.1.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 87%] Built target a3m_database_reduce-sse4.1 make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_extract-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_extract-sse4.1.dir/build.make src/CMakeFiles/a3m_database_extract-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-sse4.1.dir/link.d "CMakeFiles/a3m_database_extract-sse4.1.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 89%] Built target a3m_database_extract-sse4.1 make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/a3m_database_filter-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/a3m_database_filter-sse4.1.dir/build.make src/CMakeFiles/a3m_database_filter-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse4.1.dir/link.d "CMakeFiles/a3m_database_filter-sse4.1.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse4.1 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse4.1' [ 91%] Built target a3m_database_filter-sse4.1 make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/cstranslate-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/cstranslate-sse4.1.dir/build.make src/CMakeFiles/cstranslate-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse4.1.dir/link.d "CMakeFiles/cstranslate-sse4.1.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse4.1 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 92%] Built target cstranslate-sse4.1 make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_omp-sse4.1.dir/build.make src/CMakeFiles/hhblits_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse4.1.dir/link.d "CMakeFiles/hhblits_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 94%] Built target hhblits_omp-sse4.1 make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhsearch_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhsearch_omp-sse4.1.dir/build.make src/CMakeFiles/hhsearch_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse4.1.dir/link.d "CMakeFiles/hhsearch_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 96%] Built target hhsearch_omp-sse4.1 make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhalign_omp-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhalign_omp-sse4.1.dir/build.make src/CMakeFiles/hhalign_omp-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse4.1.dir/link.d "CMakeFiles/hhalign_omp-sse4.1.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [ 98%] Built target hhalign_omp-sse4.1 make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/depend make[4]: Entering directory '/<>/build_sse4.1' cd /<>/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse4.1 /<>/build_sse4.1/src /<>/build_sse4.1/src/CMakeFiles/hhblits_ca3m-sse4.1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse4.1' make -f src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build.make src/CMakeFiles/hhblits_ca3m-sse4.1.dir/build make[4]: Entering directory '/<>/build_sse4.1' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o cd /<>/build_sse4.1/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse4.1/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse4.1/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse4.1 cd /<>/build_sse4.1/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse4.1.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse4.1.dir/link.d "CMakeFiles/hhblits_ca3m-sse4.1.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse4.1 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse4.1' [100%] Built target hhblits_ca3m-sse4.1 make[3]: Leaving directory '/<>/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /<>/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles /<>/build_ssse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_ssse3 /<>/build_ssse3/lib/ffindex/src /<>/build_ssse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_ssse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_ssse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_ssse3 /<>/build_ssse3/data /<>/build_ssse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_ssse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.crf.h > /<>/build_ssse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.crf.h.tmp /<>/build_ssse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_ssse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/context_data.lib.h > /<>/build_ssse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/context_data.lib.h.tmp /<>/build_ssse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_ssse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_ssse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_ssse3/generated/cs219.lib.h > /<>/build_ssse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_ssse3/generated/cs219.lib.h.tmp /<>/build_ssse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_ssse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a 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/<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_ssse3 /<>/build_ssse3/src/cs /<>/build_ssse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_ssse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_ssse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_ssse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits-ssse3.dir/build.make src/CMakeFiles/hhblits-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-ssse3.dir/link.d "CMakeFiles/hhblits-ssse3.dir/hhblits_app.cpp.o" -o hhblits-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 70%] Built target hhblits-ssse3 make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhmake-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhmake-ssse3.dir/build.make src/CMakeFiles/hhmake-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-ssse3.dir/link.d "CMakeFiles/hhmake-ssse3.dir/hhmake.cpp.o" -o hhmake-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 72%] Built target hhmake-ssse3 make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhfilter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhfilter-ssse3.dir/build.make src/CMakeFiles/hhfilter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-ssse3.dir/link.d "CMakeFiles/hhfilter-ssse3.dir/hhfilter.cpp.o" -o hhfilter-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 74%] Built target hhfilter-ssse3 make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch-ssse3.dir/build.make src/CMakeFiles/hhsearch-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-ssse3.dir/link.d "CMakeFiles/hhsearch-ssse3.dir/hhblits_app.cpp.o" -o hhsearch-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 76%] Built target hhsearch-ssse3 make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign-ssse3.dir/build.make src/CMakeFiles/hhalign-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-ssse3.dir/link.d "CMakeFiles/hhalign-ssse3.dir/hhblits_app.cpp.o" -o hhalign-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 78%] Built target hhalign-ssse3 make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhconsensus-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhconsensus-ssse3.dir/build.make src/CMakeFiles/hhconsensus-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-ssse3.dir/link.d "CMakeFiles/hhconsensus-ssse3.dir/hhconsensus.cpp.o" -o hhconsensus-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 80%] Built target hhconsensus-ssse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_extract-ssse3.dir/build.make src/CMakeFiles/a3m_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-ssse3.dir/link.d "CMakeFiles/a3m_extract-ssse3.dir/a3m_extract.cpp.o" -o a3m_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 83%] Built target a3m_extract-ssse3 make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-ssse3.dir/link.d "CMakeFiles/a3m_reduce-ssse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 85%] Built target a3m_reduce-ssse3 make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_reduce-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_reduce-ssse3.dir/build.make src/CMakeFiles/a3m_database_reduce-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-ssse3.dir/link.d "CMakeFiles/a3m_database_reduce-ssse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 87%] Built target a3m_database_reduce-ssse3 make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_extract-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_extract-ssse3.dir/build.make src/CMakeFiles/a3m_database_extract-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-ssse3.dir/link.d "CMakeFiles/a3m_database_extract-ssse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 89%] Built target a3m_database_extract-ssse3 make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/a3m_database_filter-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/a3m_database_filter-ssse3.dir/build.make src/CMakeFiles/a3m_database_filter-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-ssse3.dir/link.d "CMakeFiles/a3m_database_filter-ssse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-ssse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_ssse3' [ 91%] Built target a3m_database_filter-ssse3 make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/cstranslate-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/cstranslate-ssse3.dir/build.make src/CMakeFiles/cstranslate-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-ssse3.dir/link.d "CMakeFiles/cstranslate-ssse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-ssse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 92%] Built target cstranslate-ssse3 make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_omp-ssse3.dir/build.make src/CMakeFiles/hhblits_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-ssse3.dir/link.d "CMakeFiles/hhblits_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 94%] Built target hhblits_omp-ssse3 make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhsearch_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhsearch_omp-ssse3.dir/build.make src/CMakeFiles/hhsearch_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-ssse3.dir/link.d "CMakeFiles/hhsearch_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 96%] Built target hhsearch_omp-ssse3 make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhalign_omp-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhalign_omp-ssse3.dir/build.make src/CMakeFiles/hhalign_omp-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-ssse3.dir/link.d "CMakeFiles/hhalign_omp-ssse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [ 98%] Built target hhalign_omp-ssse3 make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/depend make[4]: Entering directory '/<>/build_ssse3' cd /<>/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_ssse3 /<>/build_ssse3/src /<>/build_ssse3/src/CMakeFiles/hhblits_ca3m-ssse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_ssse3' make -f src/CMakeFiles/hhblits_ca3m-ssse3.dir/build.make src/CMakeFiles/hhblits_ca3m-ssse3.dir/build make[4]: Entering directory '/<>/build_ssse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o cd /<>/build_ssse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_ssse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_ssse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-ssse3 cd /<>/build_ssse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-ssse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-ssse3.dir/link.d "CMakeFiles/hhblits_ca3m-ssse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-ssse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_ssse3' [100%] Built target hhblits_ca3m-ssse3 make[3]: Leaving directory '/<>/build_ssse3' /usr/bin/cmake -E cmake_progress_start /<>/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles /<>/build_sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse3' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse3' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse3' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse3' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse3' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse3' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse3' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> 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/<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse3' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse3 /<>/build_sse3/lib/ffindex/src /<>/build_sse3/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse3' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse3/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse3/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse3' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse3 /<>/build_sse3/data /<>/build_sse3/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse3' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse3/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.crf.h > /<>/build_sse3/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.crf.h.tmp /<>/build_sse3/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse3/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/context_data.lib.h > /<>/build_sse3/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/context_data.lib.h.tmp /<>/build_sse3/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse3/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse3/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse3/generated/cs219.lib.h > /<>/build_sse3/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse3/generated/cs219.lib.h.tmp /<>/build_sse3/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse3' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse3' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse3' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse3' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse3 /<>/build_sse3/src/cs /<>/build_sse3/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse3/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse3/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse3' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits-sse3.dir/build.make src/CMakeFiles/hhblits-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse3.dir/link.d "CMakeFiles/hhblits-sse3.dir/hhblits_app.cpp.o" -o hhblits-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 70%] Built target hhblits-sse3 make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhmake-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhmake-sse3.dir/build.make src/CMakeFiles/hhmake-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse3.dir/link.d "CMakeFiles/hhmake-sse3.dir/hhmake.cpp.o" -o hhmake-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 72%] Built target hhmake-sse3 make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhfilter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhfilter-sse3.dir/build.make src/CMakeFiles/hhfilter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse3.dir/link.d "CMakeFiles/hhfilter-sse3.dir/hhfilter.cpp.o" -o hhfilter-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 74%] Built target hhfilter-sse3 make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch-sse3.dir/build.make src/CMakeFiles/hhsearch-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse3.dir/link.d "CMakeFiles/hhsearch-sse3.dir/hhblits_app.cpp.o" -o hhsearch-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 76%] Built target hhsearch-sse3 make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign-sse3.dir/build.make src/CMakeFiles/hhalign-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse3.dir/link.d "CMakeFiles/hhalign-sse3.dir/hhblits_app.cpp.o" -o hhalign-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 78%] Built target hhalign-sse3 make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhconsensus-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhconsensus-sse3.dir/build.make src/CMakeFiles/hhconsensus-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse3.dir/link.d "CMakeFiles/hhconsensus-sse3.dir/hhconsensus.cpp.o" -o hhconsensus-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 80%] Built target hhconsensus-sse3 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse3' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse3/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_extract-sse3.dir/build.make src/CMakeFiles/a3m_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse3.dir/link.d "CMakeFiles/a3m_extract-sse3.dir/a3m_extract.cpp.o" -o a3m_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 83%] Built target a3m_extract-sse3 make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_reduce-sse3.dir/build.make src/CMakeFiles/a3m_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse3.dir/link.d "CMakeFiles/a3m_reduce-sse3.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 85%] Built target a3m_reduce-sse3 make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_reduce-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_reduce-sse3.dir/build.make src/CMakeFiles/a3m_database_reduce-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse3.dir/link.d "CMakeFiles/a3m_database_reduce-sse3.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 87%] Built target a3m_database_reduce-sse3 make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_extract-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_extract-sse3.dir/build.make src/CMakeFiles/a3m_database_extract-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-sse3.dir/link.d "CMakeFiles/a3m_database_extract-sse3.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 89%] Built target a3m_database_extract-sse3 make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/a3m_database_filter-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/a3m_database_filter-sse3.dir/build.make src/CMakeFiles/a3m_database_filter-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse3.dir/link.d "CMakeFiles/a3m_database_filter-sse3.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse3 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse3' [ 91%] Built target a3m_database_filter-sse3 make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/cstranslate-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/cstranslate-sse3.dir/build.make src/CMakeFiles/cstranslate-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse3.dir/link.d "CMakeFiles/cstranslate-sse3.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse3 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 92%] Built target cstranslate-sse3 make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_omp-sse3.dir/build.make src/CMakeFiles/hhblits_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse3.dir/link.d "CMakeFiles/hhblits_omp-sse3.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 94%] Built target hhblits_omp-sse3 make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhsearch_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhsearch_omp-sse3.dir/build.make src/CMakeFiles/hhsearch_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse3.dir/link.d "CMakeFiles/hhsearch_omp-sse3.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 96%] Built target hhsearch_omp-sse3 make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhalign_omp-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhalign_omp-sse3.dir/build.make src/CMakeFiles/hhalign_omp-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse3.dir/link.d "CMakeFiles/hhalign_omp-sse3.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [ 98%] Built target hhalign_omp-sse3 make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/depend make[4]: Entering directory '/<>/build_sse3' cd /<>/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse3 /<>/build_sse3/src /<>/build_sse3/src/CMakeFiles/hhblits_ca3m-sse3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse3' make -f src/CMakeFiles/hhblits_ca3m-sse3.dir/build.make src/CMakeFiles/hhblits_ca3m-sse3.dir/build make[4]: Entering directory '/<>/build_sse3' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o cd /<>/build_sse3/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse3/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse3/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse3 cd /<>/build_sse3/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse3.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse3.dir/link.d "CMakeFiles/hhblits_ca3m-sse3.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse3 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse3' [100%] Built target hhblits_ca3m-sse3 make[3]: Leaving directory '/<>/build_sse3' /usr/bin/cmake -E cmake_progress_start /<>/build_sse3/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles /<>/build_plain//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_plain' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_plain' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_plain' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_plain' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_plain' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_plain' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_plain' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_plain /<>/build_plain/lib/ffindex/src /<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_plain' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> 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/<>/build_plain/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_plain' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_plain/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_plain/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_plain' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_plain /<>/build_plain/data /<>/build_plain/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_plain' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_plain/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/context_data.crf.h > /<>/build_plain/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/context_data.crf.h.tmp /<>/build_plain/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_plain/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/context_data.lib.h > /<>/build_plain/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/context_data.lib.h.tmp /<>/build_plain/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_plain/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_plain/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_plain/generated/cs219.lib.h > /<>/build_plain/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_plain/generated/cs219.lib.h.tmp /<>/build_plain/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_plain' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_plain' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_plain' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_plain' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_plain' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_plain /<>/build_plain/src/cs /<>/build_plain/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_plain/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_plain/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_plain' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhblits.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhhit.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhmatrices.h:12, from /<>/src/hhmatrices.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhsearch.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhalign.h:11, from /<>/src/hhalign.cpp:30: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhhitlist.h:16, from /<>/src/hhhitlist.cpp:9: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhposteriordecoder.cpp:29: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhutil.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhalignment.h:18, from /<>/src/hhalignment.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhforwardalgorithm.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmm.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhposteriordecoderrunner.h:10, from /<>/src/hhposteriordecoderrunner.cpp:17: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhhalfalignment.h:6, from /<>/src/hhfullalignment.h:5, from /<>/src/hhfullalignment.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhhmmsimd.cpp:10: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriormatrix.h:12, from /<>/src/hhposteriormatrix.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbi.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhbacktracemac.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhmacalgorithm.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhprefilter.h:17, from /<>/src/hhprefilter.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhviterbimatrix.h:11, from /<>/src/hhviterbimatrix.cpp:11: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhposteriordecoder.h:35, from /<>/src/hhbackwardalgorithm.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/ffindexdatabase.cpp:2: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhdatabase.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:19, from /<>/src/hhhalfalignment.h:6, from /<>/src/hhhalfalignment.cpp:3: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhhmmsimd.h:5, from /<>/src/hhviterbirunner.h:4, from /<>/src/hhviterbirunner.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhdatabase.h:19, from /<>/src/hhhmm.h:10, from /<>/src/hhfunc.h:12, from /<>/src/hhfunc.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_plain' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits-plain.dir/build.make src/CMakeFiles/hhblits-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 69%] Building CXX object src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_app.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 70%] Linking CXX executable hhblits-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-plain.dir/link.d "CMakeFiles/hhblits-plain.dir/hhblits_app.cpp.o" -o hhblits-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 70%] Built target hhblits-plain make -f src/CMakeFiles/hhmake-plain.dir/build.make src/CMakeFiles/hhmake-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhmake-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhmake-plain.dir/build.make src/CMakeFiles/hhmake-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 71%] Building CXX object src/CMakeFiles/hhmake-plain.dir/hhmake.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-plain.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-plain.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-plain.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhmake.cpp:47: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 72%] Linking CXX executable hhmake-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-plain.dir/link.d "CMakeFiles/hhmake-plain.dir/hhmake.cpp.o" -o hhmake-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 72%] Built target hhmake-plain make -f src/CMakeFiles/hhfilter-plain.dir/build.make src/CMakeFiles/hhfilter-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhfilter-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhfilter-plain.dir/build.make src/CMakeFiles/hhfilter-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 73%] Building CXX object src/CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhfilter.cpp:29: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 74%] Linking CXX executable hhfilter-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-plain.dir/link.d "CMakeFiles/hhfilter-plain.dir/hhfilter.cpp.o" -o hhfilter-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 74%] Built target hhfilter-plain make -f src/CMakeFiles/hhsearch-plain.dir/build.make src/CMakeFiles/hhsearch-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhsearch-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhsearch-plain.dir/build.make src/CMakeFiles/hhsearch-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 75%] Building CXX object src/CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_app.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 76%] Linking CXX executable hhsearch-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-plain.dir/link.d "CMakeFiles/hhsearch-plain.dir/hhblits_app.cpp.o" -o hhsearch-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 76%] Built target hhsearch-plain make -f src/CMakeFiles/hhalign-plain.dir/build.make src/CMakeFiles/hhalign-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhalign-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhalign-plain.dir/build.make src/CMakeFiles/hhalign-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 77%] Building CXX object src/CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_app.cpp:1: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 78%] Linking CXX executable hhalign-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-plain.dir/link.d "CMakeFiles/hhalign-plain.dir/hhblits_app.cpp.o" -o hhalign-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 78%] Built target hhalign-plain make -f src/CMakeFiles/hhconsensus-plain.dir/build.make src/CMakeFiles/hhconsensus-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhconsensus-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhconsensus-plain.dir/build.make src/CMakeFiles/hhconsensus-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhconsensus.cpp:27: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ [ 80%] Linking CXX executable hhconsensus-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-plain.dir/link.d "CMakeFiles/hhconsensus-plain.dir/hhconsensus.cpp.o" -o hhconsensus-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 80%] Built target hhconsensus-plain make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_plain' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_plain/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_extract-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_extract-plain.dir/build.make src/CMakeFiles/a3m_extract-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-plain.dir/link.d "CMakeFiles/a3m_extract-plain.dir/a3m_extract.cpp.o" -o a3m_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 83%] Built target a3m_extract-plain make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_reduce-plain.dir/build.make src/CMakeFiles/a3m_reduce-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-plain.dir/link.d "CMakeFiles/a3m_reduce-plain.dir/a3m_reduce.cpp.o" -o a3m_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 85%] Built target a3m_reduce-plain make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_reduce-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_reduce-plain.dir/build.make src/CMakeFiles/a3m_database_reduce-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-plain.dir/link.d "CMakeFiles/a3m_database_reduce-plain.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 87%] Built target a3m_database_reduce-plain make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_extract-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/a3m_database_extract-plain.dir/build.make src/CMakeFiles/a3m_database_extract-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-plain.dir/link.d "CMakeFiles/a3m_database_extract-plain.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-plain ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_plain' [ 89%] Built target a3m_database_extract-plain make -f src/CMakeFiles/a3m_database_filter-plain.dir/build.make src/CMakeFiles/a3m_database_filter-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/a3m_database_filter-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f 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/<>/build_plain/src/CMakeFiles/cstranslate-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/cstranslate-plain.dir/build.make src/CMakeFiles/cstranslate-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 92%] Building CXX object src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-plain.dir/link.d "CMakeFiles/cstranslate-plain.dir/cs/cstranslate_app.cc.o" -o cstranslate-plain libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 92%] Built target cstranslate-plain make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_omp-plain.dir/build.make src/CMakeFiles/hhblits_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-plain.dir/link.d "CMakeFiles/hhblits_omp-plain.dir/hhblits_omp.cpp.o" -o hhblits_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 94%] Built target hhblits_omp-plain make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhsearch_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhsearch_omp-plain.dir/build.make src/CMakeFiles/hhsearch_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-plain.dir/link.d "CMakeFiles/hhsearch_omp-plain.dir/hhblits_omp.cpp.o" -o hhsearch_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 96%] Built target hhsearch_omp-plain make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhalign_omp-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhalign_omp-plain.dir/build.make src/CMakeFiles/hhalign_omp-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-plain.dir/link.d "CMakeFiles/hhalign_omp-plain.dir/hhblits_omp.cpp.o" -o hhalign_omp-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [ 98%] Built target hhalign_omp-plain make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/depend make[4]: Entering directory '/<>/build_plain' cd /<>/build_plain && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_plain /<>/build_plain/src /<>/build_plain/src/CMakeFiles/hhblits_ca3m-plain.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_plain' make -f src/CMakeFiles/hhblits_ca3m-plain.dir/build.make src/CMakeFiles/hhblits_ca3m-plain.dir/build make[4]: Entering directory '/<>/build_plain' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o cd /<>/build_plain/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_plain/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_plain/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp In file included from /<>/src/hhutil.h:14, from /<>/src/hhblits.h:46, from /<>/src/hhblits_ca3m.cpp:8: /<>/src/hhutil-inl.h: In function ‘simd_float simdf32_fpow2(simd_float)’: /<>/src/hhutil-inl.h:371:45: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 371 | inline simd_float simdf32_fpow2(simd_float X) { | ^ /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-plain cd /<>/build_plain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-plain.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-plain.dir/link.d "CMakeFiles/hhblits_ca3m-plain.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-plain libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_plain' [100%] Built target hhblits_ca3m-plain make[3]: Leaving directory '/<>/build_plain' /usr/bin/cmake -E cmake_progress_start /<>/build_plain/CMakeFiles 0 make[2]: Leaving directory '/<>/build_plain' for SIMD in sse2 sse ; do \ dh_auto_build --builddirectory build_${SIMD} ; \ done cd build_sse2 && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse2' /usr/bin/cmake -S/<> -B/<>/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse2/CMakeFiles /<>/build_sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse2' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse2' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse2' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse2' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse2' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse2' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse2' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse2' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse2' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse2 /<>/build_sse2/lib/ffindex/src /<>/build_sse2/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse2' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse2/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse2/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse2' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse2 /<>/build_sse2/data /<>/build_sse2/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse2' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse2/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse2/generated/context_data.crf.h > /<>/build_sse2/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse2/generated/context_data.crf.h.tmp /<>/build_sse2/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse2/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse2/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse2/generated/context_data.lib.h > /<>/build_sse2/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse2/generated/context_data.lib.h.tmp /<>/build_sse2/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse2/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse2/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse2/generated/cs219.lib.h > /<>/build_sse2/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse2/generated/cs219.lib.h.tmp /<>/build_sse2/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse2' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse2' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse2' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse2' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse2' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse2/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse2 /<>/build_sse2/src/cs /<>/build_sse2/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse2' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse2/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse2/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse2/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse2' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse2' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse2/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse2' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse2.dir/build.make src/CMakeFiles/hhblits-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhblits-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhblits-sse2.dir/build.make src/CMakeFiles/hhblits-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse2.dir/hhblits_app.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse2.dir/link.d "CMakeFiles/hhblits-sse2.dir/hhblits_app.cpp.o" -o hhblits-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 70%] Built target hhblits-sse2 make -f src/CMakeFiles/hhmake-sse2.dir/build.make src/CMakeFiles/hhmake-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhmake-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhmake-sse2.dir/build.make src/CMakeFiles/hhmake-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse2.dir/hhmake.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse2.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse2.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse2.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse2.dir/link.d "CMakeFiles/hhmake-sse2.dir/hhmake.cpp.o" -o hhmake-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 72%] Built target hhmake-sse2 make -f src/CMakeFiles/hhfilter-sse2.dir/build.make src/CMakeFiles/hhfilter-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhfilter-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhfilter-sse2.dir/build.make src/CMakeFiles/hhfilter-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse2.dir/hhfilter.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse2.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse2.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse2.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse2.dir/link.d "CMakeFiles/hhfilter-sse2.dir/hhfilter.cpp.o" -o hhfilter-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 74%] Built target hhfilter-sse2 make -f src/CMakeFiles/hhsearch-sse2.dir/build.make src/CMakeFiles/hhsearch-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhsearch-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhsearch-sse2.dir/build.make src/CMakeFiles/hhsearch-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse2.dir/hhblits_app.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse2.dir/link.d "CMakeFiles/hhsearch-sse2.dir/hhblits_app.cpp.o" -o hhsearch-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 76%] Built target hhsearch-sse2 make -f src/CMakeFiles/hhalign-sse2.dir/build.make src/CMakeFiles/hhalign-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhalign-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhalign-sse2.dir/build.make src/CMakeFiles/hhalign-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse2.dir/hhblits_app.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse2.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse2.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse2.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse2.dir/link.d "CMakeFiles/hhalign-sse2.dir/hhblits_app.cpp.o" -o hhalign-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 78%] Built target hhalign-sse2 make -f src/CMakeFiles/hhconsensus-sse2.dir/build.make src/CMakeFiles/hhconsensus-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhconsensus-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhconsensus-sse2.dir/build.make src/CMakeFiles/hhconsensus-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse2.dir/hhconsensus.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse2.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse2.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse2.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse2.dir/link.d "CMakeFiles/hhconsensus-sse2.dir/hhconsensus.cpp.o" -o hhconsensus-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 80%] Built target hhconsensus-sse2 make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse2' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse2/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse2' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse2.dir/build.make src/CMakeFiles/a3m_extract-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/a3m_extract-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/a3m_extract-sse2.dir/build.make src/CMakeFiles/a3m_extract-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse2.dir/a3m_extract.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse2.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse2.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse2.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse2.dir/link.d "CMakeFiles/a3m_extract-sse2.dir/a3m_extract.cpp.o" -o a3m_extract-sse2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse2' [ 83%] Built target a3m_extract-sse2 make -f src/CMakeFiles/a3m_reduce-sse2.dir/build.make src/CMakeFiles/a3m_reduce-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/a3m_reduce-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/a3m_reduce-sse2.dir/build.make src/CMakeFiles/a3m_reduce-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse2.dir/a3m_reduce.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse2.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse2.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse2.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse2.dir/link.d "CMakeFiles/a3m_reduce-sse2.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse2' [ 85%] Built target a3m_reduce-sse2 make -f src/CMakeFiles/a3m_database_reduce-sse2.dir/build.make src/CMakeFiles/a3m_database_reduce-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/a3m_database_reduce-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/a3m_database_reduce-sse2.dir/build.make src/CMakeFiles/a3m_database_reduce-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse2.dir/a3m_database_reduce.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse2.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse2.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse2.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse2.dir/link.d "CMakeFiles/a3m_database_reduce-sse2.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse2' [ 87%] Built target a3m_database_reduce-sse2 make -f src/CMakeFiles/a3m_database_extract-sse2.dir/build.make src/CMakeFiles/a3m_database_extract-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/a3m_database_extract-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/a3m_database_extract-sse2.dir/build.make src/CMakeFiles/a3m_database_extract-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse2.dir/a3m_database_extract.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse2.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse2.dir/a3m_database_extract.cpp.o.d -o 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src/CMakeFiles/a3m_database_filter-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/a3m_database_filter-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/a3m_database_filter-sse2.dir/build.make src/CMakeFiles/a3m_database_filter-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse2.dir/a3m_database_filter.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse2.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse2.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse2.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse2.dir/link.d "CMakeFiles/a3m_database_filter-sse2.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse2 ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse2' [ 91%] Built target a3m_database_filter-sse2 make -f src/CMakeFiles/cstranslate-sse2.dir/build.make src/CMakeFiles/cstranslate-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/cstranslate-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/cstranslate-sse2.dir/build.make src/CMakeFiles/cstranslate-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse2.dir/cs/cstranslate_app.cc.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse2.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse2.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse2.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse2.dir/link.d "CMakeFiles/cstranslate-sse2.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse2 libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 92%] Built target cstranslate-sse2 make -f src/CMakeFiles/hhblits_omp-sse2.dir/build.make src/CMakeFiles/hhblits_omp-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhblits_omp-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhblits_omp-sse2.dir/build.make src/CMakeFiles/hhblits_omp-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse2.dir/hhblits_omp.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse2.dir/link.d "CMakeFiles/hhblits_omp-sse2.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 94%] Built target hhblits_omp-sse2 make -f src/CMakeFiles/hhsearch_omp-sse2.dir/build.make src/CMakeFiles/hhsearch_omp-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhsearch_omp-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhsearch_omp-sse2.dir/build.make src/CMakeFiles/hhsearch_omp-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse2.dir/hhblits_omp.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse2.dir/link.d "CMakeFiles/hhsearch_omp-sse2.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 96%] Built target hhsearch_omp-sse2 make -f src/CMakeFiles/hhalign_omp-sse2.dir/build.make src/CMakeFiles/hhalign_omp-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhalign_omp-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhalign_omp-sse2.dir/build.make src/CMakeFiles/hhalign_omp-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse2.dir/hhblits_omp.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse2.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse2.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse2.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse2.dir/link.d "CMakeFiles/hhalign_omp-sse2.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [ 98%] Built target hhalign_omp-sse2 make -f src/CMakeFiles/hhblits_ca3m-sse2.dir/build.make src/CMakeFiles/hhblits_ca3m-sse2.dir/depend make[4]: Entering directory '/<>/build_sse2' cd /<>/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse2 /<>/build_sse2/src /<>/build_sse2/src/CMakeFiles/hhblits_ca3m-sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse2' make -f src/CMakeFiles/hhblits_ca3m-sse2.dir/build.make src/CMakeFiles/hhblits_ca3m-sse2.dir/build make[4]: Entering directory '/<>/build_sse2' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse2.dir/hhblits_ca3m.cpp.o cd /<>/build_sse2/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse2/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse2/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse2.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse2.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse2.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse2 cd /<>/build_sse2/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse2.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse2.dir/link.d "CMakeFiles/hhblits_ca3m-sse2.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse2 libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse2' [100%] Built target hhblits_ca3m-sse2 make[3]: Leaving directory '/<>/build_sse2' /usr/bin/cmake -E cmake_progress_start /<>/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse2' cd build_sse && make -j1 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/build_sse' /usr/bin/cmake -S/<> -B/<>/build_sse --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build_sse/CMakeFiles /<>/build_sse//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex.dir/build.make lib/ffindex/src/CMakeFiles/ffindex.dir/build make[4]: Entering directory '/<>/build_sse' [ 1%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffindex.c.o -MF CMakeFiles/ffindex.dir/ffindex.c.o.d -o CMakeFiles/ffindex.dir/ffindex.c.o -c /<>/lib/ffindex/src/ffindex.c /<>/lib/ffindex/src/ffindex.c: In function ‘ffindex_index_parse’: /<>/lib/ffindex/src/ffindex.c:291:43: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 291 | fprintf(stderr, "Failed to allocate %ld bytes\n", nbytes); | ~~^ ~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 2%] Building C object lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex.dir/ffutil.c.o -MF CMakeFiles/ffindex.dir/ffutil.c.o.d -o CMakeFiles/ffindex.dir/ffutil.c.o -c /<>/lib/ffindex/src/ffutil.c [ 3%] Linking C static library libffindex.a cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -P CMakeFiles/ffindex.dir/cmake_clean_target.cmake cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libffindex.a CMakeFiles/ffindex.dir/ffindex.c.o CMakeFiles/ffindex.dir/ffutil.c.o /usr/bin/i686-linux-gnu-ranlib libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 3%] Built target ffindex make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_apply.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_apply.dir/build make[4]: Entering directory '/<>/build_sse' [ 4%] Building C object lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -UHAVE_MPI -MD -MT lib/ffindex/src/CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -MF CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o.d -o CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -c /<>/lib/ffindex/src/ffindex_apply_mpi.c /<>/lib/ffindex/src/ffindex_apply_mpi.c: In function ‘ffindex_apply_by_entry’: /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:42: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/lib/ffindex/src/ffindex_apply_mpi.c:172:47: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 172 | fprintf(log_file_out, "%s\t%ld\t%ld\t%lld\t%d\n", entry->name, entry->offset, entry->length, end - start, WEXITSTATUS(status)); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d [ 5%] Linking C executable ffindex_apply cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_apply.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_apply.dir/link.d CMakeFiles/ffindex_apply.dir/ffindex_apply_mpi.c.o -o ffindex_apply libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 5%] Built target ffindex_apply make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/build make[4]: Entering directory '/<>/build_sse' [ 6%] Building C object lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -MF CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o.d -o CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -c /<>/lib/ffindex/src/ffindex_reduce.c [ 7%] Linking C executable ffindex_reduce cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_reduce.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_reduce.dir/link.d CMakeFiles/ffindex_reduce.dir/ffindex_reduce.c.o -o ffindex_reduce libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 7%] Built target ffindex_reduce make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_build.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_build.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_build.dir/build make[4]: Entering directory '/<>/build_sse' [ 8%] Building C object lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_build.dir/ffindex_build.c.o -MF CMakeFiles/ffindex_build.dir/ffindex_build.c.o.d -o CMakeFiles/ffindex_build.dir/ffindex_build.c.o -c /<>/lib/ffindex/src/ffindex_build.c [ 9%] Linking C executable ffindex_build cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_build.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_build.dir/link.d CMakeFiles/ffindex_build.dir/ffindex_build.c.o -o ffindex_build libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 9%] Built target ffindex_build make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/build make[4]: Entering directory '/<>/build_sse' [ 10%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -MF CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o.d -o CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta.c [ 11%] Linking C executable ffindex_from_fasta cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta.dir/link.d CMakeFiles/ffindex_from_fasta.dir/ffindex_from_fasta.c.o -o ffindex_from_fasta libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 11%] Built target ffindex_from_fasta make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_get.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_get.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_get.dir/build make[4]: Entering directory '/<>/build_sse' [ 12%] Building C object lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_get.dir/ffindex_get.c.o -MF CMakeFiles/ffindex_get.dir/ffindex_get.c.o.d -o CMakeFiles/ffindex_get.dir/ffindex_get.c.o -c /<>/lib/ffindex/src/ffindex_get.c [ 13%] Linking C executable ffindex_get cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_get.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_get.dir/link.d CMakeFiles/ffindex_get.dir/ffindex_get.c.o -o ffindex_get libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 13%] Built target ffindex_get make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_modify.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_modify.dir/build make[4]: Entering directory '/<>/build_sse' [ 14%] Building C object lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -MF CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o.d -o CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -c /<>/lib/ffindex/src/ffindex_modify.c [ 15%] Linking C executable ffindex_modify cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_modify.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_modify.dir/link.d CMakeFiles/ffindex_modify.dir/ffindex_modify.c.o -o ffindex_modify libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 15%] Built target ffindex_modify make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/build make[4]: Entering directory '/<>/build_sse' [ 16%] Building C object lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -MF CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o.d -o CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -c /<>/lib/ffindex/src/ffindex_unpack.c [ 17%] Linking C executable ffindex_unpack cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_unpack.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_unpack.dir/link.d CMakeFiles/ffindex_unpack.dir/ffindex_unpack.c.o -o ffindex_unpack libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 17%] Built target ffindex_unpack make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_order.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_order.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_order.dir/build make[4]: Entering directory '/<>/build_sse' [ 18%] Building C object lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_order.dir/ffindex_order.c.o -MF CMakeFiles/ffindex_order.dir/ffindex_order.c.o.d -o CMakeFiles/ffindex_order.dir/ffindex_order.c.o -c /<>/lib/ffindex/src/ffindex_order.c [ 19%] Linking C executable ffindex_order cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_order.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_order.dir/link.d CMakeFiles/ffindex_order.dir/ffindex_order.c.o -o ffindex_order libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 19%] Built target ffindex_order make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/ffindex/src /<>/build_sse /<>/build_sse/lib/ffindex/src /<>/build_sse/lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build.make lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/build make[4]: Entering directory '/<>/build_sse' [ 20%] Building C object lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o cd /<>/build_sse/lib/ffindex/src && /usr/bin/i686-linux-gnu-gcc -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/lib/ffindex/src/ext -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT lib/ffindex/src/CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -MF CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o.d -o CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -c /<>/lib/ffindex/src/ffindex_from_fasta_with_split.c [ 21%] Linking C executable ffindex_from_fasta_with_split cd /<>/build_sse/lib/ffindex/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ffindex_from_fasta_with_split.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-gcc -std=c99 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/ffindex_from_fasta_with_split.dir/link.d CMakeFiles/ffindex_from_fasta_with_split.dir/ffindex_from_fasta_with_split.c.o -o ffindex_from_fasta_with_split libffindex.a make[4]: Leaving directory '/<>/build_sse' [ 21%] Built target ffindex_from_fasta_with_split make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/data /<>/build_sse /<>/build_sse/data /<>/build_sse/data/CMakeFiles/generated.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/build_sse' [ 22%] Generating ../generated/context_data.crf.h cd /<>/data && mkdir -p /<>/build_sse/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.crf > /<>/build_sse/generated/context_data.crf.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse/generated/context_data.crf.h > /<>/build_sse/generated/context_data.crf.h.tmp cd /<>/data && mv -f /<>/build_sse/generated/context_data.crf.h.tmp /<>/build_sse/generated/context_data.crf.h [ 23%] Generating ../generated/context_data.lib.h cd /<>/data && mkdir -p /<>/build_sse/generated cd /<>/data && /<>/cmake/xxdi.pl context_data.lib > /<>/build_sse/generated/context_data.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse/generated/context_data.lib.h > /<>/build_sse/generated/context_data.lib.h.tmp cd /<>/data && mv -f /<>/build_sse/generated/context_data.lib.h.tmp /<>/build_sse/generated/context_data.lib.h [ 24%] Generating ../generated/cs219.lib.h cd /<>/data && mkdir -p /<>/build_sse/generated cd /<>/data && /<>/cmake/xxdi.pl cs219.lib > /<>/build_sse/generated/cs219.lib.h cd /<>/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /<>/build_sse/generated/cs219.lib.h > /<>/build_sse/generated/cs219.lib.h.tmp cd /<>/data && mv -f /<>/build_sse/generated/cs219.lib.h.tmp /<>/build_sse/generated/cs219.lib.h make[4]: Leaving directory '/<>/build_sse' [ 24%] Built target generated make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/build make[4]: Entering directory '/<>/build_sse' [ 25%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 26%] Linking CXX static library libhhviterbialgorithm_with_celloff.a cd /<>/build_sse/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff.dir/cmake_clean_target.cmake cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff.a CMakeFiles/hhviterbialgorithm_with_celloff.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff.a make[4]: Leaving directory '/<>/build_sse' [ 26%] Built target hhviterbialgorithm_with_celloff make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make[4]: Entering directory '/<>/build_sse' [ 27%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 28%] Linking CXX static library libhhviterbialgorithm_with_celloff_and_ss.a cd /<>/build_sse/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_with_celloff_and_ss.a CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 28%] Built target hhviterbialgorithm_with_celloff_and_ss make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhviterbialgorithm_and_ss.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_and_ss.dir/build make[4]: Entering directory '/<>/build_sse' [ 29%] Building CXX object src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DVITERBI_SS_SCORE=1 -MD -MT src/CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 30%] Linking CXX static library libhhviterbialgorithm_and_ss.a cd /<>/build_sse/src && /usr/bin/cmake -P CMakeFiles/hhviterbialgorithm_and_ss.dir/cmake_clean_target.cmake cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhviterbialgorithm_and_ss.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libhhviterbialgorithm_and_ss.a CMakeFiles/hhviterbialgorithm_and_ss.dir/hhviterbialgorithm.cpp.o /usr/bin/i686-linux-gnu-ranlib libhhviterbialgorithm_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 30%] Built target hhviterbialgorithm_and_ss make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cs /<>/build_sse /<>/build_sse/src/cs /<>/build_sse/src/cs/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/cs/CMakeFiles/CS_OBJECTS.dir/build.make src/cs/CMakeFiles/CS_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse' [ 31%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/aa.cc.o -MF CMakeFiles/CS_OBJECTS.dir/aa.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/aa.cc.o -c /<>/src/cs/aa.cc [ 32%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/as.cc.o -MF CMakeFiles/CS_OBJECTS.dir/as.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/as.cc.o -c /<>/src/cs/as.cc [ 33%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -MF CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o -c /<>/src/cs/assert_helpers.cc [ 34%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -MF CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o -c /<>/src/cs/blosum_matrix.cc [ 35%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -MF CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o -c /<>/src/cs/getopt_pp.cc [ 36%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/log.cc.o -MF CMakeFiles/CS_OBJECTS.dir/log.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/log.cc.o -c /<>/src/cs/log.cc [ 37%] Building CXX object src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o cd /<>/build_sse/src/cs && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/cs/CMakeFiles/CS_OBJECTS.dir/application.cc.o -MF CMakeFiles/CS_OBJECTS.dir/application.cc.o.d -o CMakeFiles/CS_OBJECTS.dir/application.cc.o -c /<>/src/cs/application.cc [ 38%] Linking CXX static library libCS_OBJECTS.a cd /<>/build_sse/src/cs && /usr/bin/cmake -P CMakeFiles/CS_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse/src/cs && /usr/bin/cmake -E cmake_link_script CMakeFiles/CS_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libCS_OBJECTS.a CMakeFiles/CS_OBJECTS.dir/aa.cc.o CMakeFiles/CS_OBJECTS.dir/as.cc.o CMakeFiles/CS_OBJECTS.dir/assert_helpers.cc.o CMakeFiles/CS_OBJECTS.dir/blosum_matrix.cc.o CMakeFiles/CS_OBJECTS.dir/getopt_pp.cc.o CMakeFiles/CS_OBJECTS.dir/log.cc.o CMakeFiles/CS_OBJECTS.dir/application.cc.o /usr/bin/i686-linux-gnu-ranlib libCS_OBJECTS.a make[4]: Leaving directory '/<>/build_sse' [ 38%] Built target CS_OBJECTS make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/build_sse' [ 39%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c /<>/src/hhblits.cpp [ 40%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o -c /<>/src/hhdecl.cpp [ 41%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o -c /<>/src/hhhit.cpp [ 42%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o -c /<>/src/hhmatrices.cpp [ 43%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o -c /<>/src/hhsearch.cpp [ 44%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o -c /<>/src/hhalign.cpp [ 45%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o -c /<>/src/hhhitlist.cpp [ 46%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o -c /<>/src/hhposteriordecoder.cpp [ 47%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o -c /<>/src/hhutil.cpp [ 48%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/util.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/util.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/util.cpp.o -c /<>/src/util.cpp [ 49%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o -c /<>/src/hhalignment.cpp /<>/src/hhalignment.cpp: In member function ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’: /<>/src/hhalignment.cpp:1797:39: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 86 [-Wformat-overflow=] 1797 | sprintf(details, "The alingment %s does not contain any sequences.", | ^~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhalignment.h:6, from /<>/src/hhalignment.cpp:8: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int Alignment::Filter2(char*, int, int, float, int, int, int, const float (*)[20])’ at /<>/src/hhalignment.cpp:1797:14: /usr/i686-linux-gnu/include/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 47 and 4142 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o -c /<>/src/hhforwardalgorithm.cpp [ 51%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o -c /<>/src/hhhmm.cpp [ 52%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o -c /<>/src/hhposteriordecoderrunner.cpp [ 53%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o -c /<>/src/hhviterbialgorithm.cpp [ 54%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o -c /<>/src/hhfullalignment.cpp [ 55%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o -c /<>/src/hhhmmsimd.cpp [ 56%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o -c /<>/src/hhposteriormatrix.cpp [ 57%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o -c /<>/src/hhviterbi.cpp [ 58%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o -c /<>/src/hhbacktracemac.cpp [ 59%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o -c /<>/src/hhmacalgorithm.cpp [ 60%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o -c /<>/src/hhprefilter.cpp [ 61%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o -c /<>/src/hhviterbimatrix.cpp [ 62%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o -c /<>/src/hhbackwardalgorithm.cpp [ 63%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o -c /<>/src/ffindexdatabase.cpp [ 64%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o -c /<>/src/hhdatabase.cpp [ 65%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o -c /<>/src/hhhalfalignment.cpp [ 66%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o -c /<>/src/hhviterbirunner.cpp [ 67%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -MF CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o.d -o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o -c /<>/src/hhfunc.cpp [ 68%] Linking CXX static library libHH_OBJECTS.a cd /<>/build_sse/src && /usr/bin/cmake -P CMakeFiles/HH_OBJECTS.dir/cmake_clean_target.cmake cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/HH_OBJECTS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libHH_OBJECTS.a CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdecl.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhit.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmatrices.cpp.o CMakeFiles/HH_OBJECTS.dir/hhsearch.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalign.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhitlist.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoder.cpp.o CMakeFiles/HH_OBJECTS.dir/hhutil.cpp.o CMakeFiles/HH_OBJECTS.dir/util.cpp.o CMakeFiles/HH_OBJECTS.dir/hhalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhforwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriordecoderrunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbialgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfullalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhmmsimd.cpp.o CMakeFiles/HH_OBJECTS.dir/hhposteriormatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbi.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbacktracemac.cpp.o CMakeFiles/HH_OBJECTS.dir/hhmacalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/hhprefilter.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbimatrix.cpp.o CMakeFiles/HH_OBJECTS.dir/hhbackwardalgorithm.cpp.o CMakeFiles/HH_OBJECTS.dir/ffindexdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhdatabase.cpp.o CMakeFiles/HH_OBJECTS.dir/hhhalfalignment.cpp.o CMakeFiles/HH_OBJECTS.dir/hhviterbirunner.cpp.o CMakeFiles/HH_OBJECTS.dir/hhfunc.cpp.o /usr/bin/i686-linux-gnu-ranlib libHH_OBJECTS.a make[4]: Leaving directory '/<>/build_sse' [ 68%] Built target HH_OBJECTS make -f src/CMakeFiles/hhblits-sse.dir/build.make src/CMakeFiles/hhblits-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhblits-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhblits-sse.dir/build.make src/CMakeFiles/hhblits-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 69%] Building CXX object src/CMakeFiles/hhblits-sse.dir/hhblits_app.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits-sse.dir/hhblits_app.cpp.o -MF CMakeFiles/hhblits-sse.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhblits-sse.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 70%] Linking CXX executable hhblits-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits-sse.dir/link.d "CMakeFiles/hhblits-sse.dir/hhblits_app.cpp.o" -o hhblits-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 70%] Built target hhblits-sse make -f src/CMakeFiles/hhmake-sse.dir/build.make src/CMakeFiles/hhmake-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhmake-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhmake-sse.dir/build.make src/CMakeFiles/hhmake-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 71%] Building CXX object src/CMakeFiles/hhmake-sse.dir/hhmake.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhmake-sse.dir/hhmake.cpp.o -MF CMakeFiles/hhmake-sse.dir/hhmake.cpp.o.d -o CMakeFiles/hhmake-sse.dir/hhmake.cpp.o -c /<>/src/hhmake.cpp [ 72%] Linking CXX executable hhmake-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhmake-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhmake-sse.dir/link.d "CMakeFiles/hhmake-sse.dir/hhmake.cpp.o" -o hhmake-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 72%] Built target hhmake-sse make -f src/CMakeFiles/hhfilter-sse.dir/build.make src/CMakeFiles/hhfilter-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhfilter-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhfilter-sse.dir/build.make src/CMakeFiles/hhfilter-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 73%] Building CXX object src/CMakeFiles/hhfilter-sse.dir/hhfilter.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhfilter-sse.dir/hhfilter.cpp.o -MF CMakeFiles/hhfilter-sse.dir/hhfilter.cpp.o.d -o CMakeFiles/hhfilter-sse.dir/hhfilter.cpp.o -c /<>/src/hhfilter.cpp [ 74%] Linking CXX executable hhfilter-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhfilter-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhfilter-sse.dir/link.d "CMakeFiles/hhfilter-sse.dir/hhfilter.cpp.o" -o hhfilter-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 74%] Built target hhfilter-sse make -f src/CMakeFiles/hhsearch-sse.dir/build.make src/CMakeFiles/hhsearch-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhsearch-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhsearch-sse.dir/build.make src/CMakeFiles/hhsearch-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 75%] Building CXX object src/CMakeFiles/hhsearch-sse.dir/hhblits_app.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch-sse.dir/hhblits_app.cpp.o -MF CMakeFiles/hhsearch-sse.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhsearch-sse.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 76%] Linking CXX executable hhsearch-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch-sse.dir/link.d "CMakeFiles/hhsearch-sse.dir/hhblits_app.cpp.o" -o hhsearch-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 76%] Built target hhsearch-sse make -f src/CMakeFiles/hhalign-sse.dir/build.make src/CMakeFiles/hhalign-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhalign-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhalign-sse.dir/build.make src/CMakeFiles/hhalign-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 77%] Building CXX object src/CMakeFiles/hhalign-sse.dir/hhblits_app.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign-sse.dir/hhblits_app.cpp.o -MF CMakeFiles/hhalign-sse.dir/hhblits_app.cpp.o.d -o CMakeFiles/hhalign-sse.dir/hhblits_app.cpp.o -c /<>/src/hhblits_app.cpp [ 78%] Linking CXX executable hhalign-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign-sse.dir/link.d "CMakeFiles/hhalign-sse.dir/hhblits_app.cpp.o" -o hhalign-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 78%] Built target hhalign-sse make -f src/CMakeFiles/hhconsensus-sse.dir/build.make src/CMakeFiles/hhconsensus-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhconsensus-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhconsensus-sse.dir/build.make src/CMakeFiles/hhconsensus-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 79%] Building CXX object src/CMakeFiles/hhconsensus-sse.dir/hhconsensus.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhconsensus-sse.dir/hhconsensus.cpp.o -MF CMakeFiles/hhconsensus-sse.dir/hhconsensus.cpp.o.d -o CMakeFiles/hhconsensus-sse.dir/hhconsensus.cpp.o -c /<>/src/hhconsensus.cpp [ 80%] Linking CXX executable hhconsensus-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhconsensus-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhconsensus-sse.dir/link.d "CMakeFiles/hhconsensus-sse.dir/hhconsensus.cpp.o" -o hhconsensus-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 80%] Built target hhconsensus-sse make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/A3M_COMPRESS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/A3M_COMPRESS.dir/build.make src/CMakeFiles/A3M_COMPRESS.dir/build make[4]: Entering directory '/<>/build_sse' [ 80%] Building CXX object src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -MF CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o.d -o CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o -c /<>/src/a3m_compress.cpp /<>/src/a3m_compress.cpp: In function ‘std::string& rtrim(std::string&)’: /<>/src/a3m_compress.cpp:504:43: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 504 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/15/string:51, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/bits/ostream.h:43, from /usr/i686-linux-gnu/include/c++/15/ostream:42, from /usr/i686-linux-gnu/include/c++/15/iostream:43, from /<>/src/a3m_compress.h:11, from /<>/src/a3m_compress.cpp:8: /usr/i686-linux-gnu/include/c++/15/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 81%] Linking CXX static library libA3M_COMPRESS.a cd /<>/build_sse/src && /usr/bin/cmake -P CMakeFiles/A3M_COMPRESS.dir/cmake_clean_target.cmake cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/A3M_COMPRESS.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-ar qc libA3M_COMPRESS.a CMakeFiles/A3M_COMPRESS.dir/a3m_compress.cpp.o /usr/bin/i686-linux-gnu-ranlib libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 81%] Built target A3M_COMPRESS make -f src/CMakeFiles/a3m_extract-sse.dir/build.make src/CMakeFiles/a3m_extract-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/a3m_extract-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/a3m_extract-sse.dir/build.make src/CMakeFiles/a3m_extract-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 82%] Building CXX object src/CMakeFiles/a3m_extract-sse.dir/a3m_extract.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_extract-sse.dir/a3m_extract.cpp.o -MF CMakeFiles/a3m_extract-sse.dir/a3m_extract.cpp.o.d -o CMakeFiles/a3m_extract-sse.dir/a3m_extract.cpp.o -c /<>/src/a3m_extract.cpp [ 83%] Linking CXX executable a3m_extract-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_extract-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_extract-sse.dir/link.d "CMakeFiles/a3m_extract-sse.dir/a3m_extract.cpp.o" -o a3m_extract-sse ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 83%] Built target a3m_extract-sse make -f src/CMakeFiles/a3m_reduce-sse.dir/build.make src/CMakeFiles/a3m_reduce-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/a3m_reduce-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/a3m_reduce-sse.dir/build.make src/CMakeFiles/a3m_reduce-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 84%] Building CXX object src/CMakeFiles/a3m_reduce-sse.dir/a3m_reduce.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_reduce-sse.dir/a3m_reduce.cpp.o -MF CMakeFiles/a3m_reduce-sse.dir/a3m_reduce.cpp.o.d -o CMakeFiles/a3m_reduce-sse.dir/a3m_reduce.cpp.o -c /<>/src/a3m_reduce.cpp [ 85%] Linking CXX executable a3m_reduce-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_reduce-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_reduce-sse.dir/link.d "CMakeFiles/a3m_reduce-sse.dir/a3m_reduce.cpp.o" -o a3m_reduce-sse ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 85%] Built target a3m_reduce-sse make -f src/CMakeFiles/a3m_database_reduce-sse.dir/build.make src/CMakeFiles/a3m_database_reduce-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/a3m_database_reduce-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/a3m_database_reduce-sse.dir/build.make src/CMakeFiles/a3m_database_reduce-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 86%] Building CXX object src/CMakeFiles/a3m_database_reduce-sse.dir/a3m_database_reduce.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_reduce-sse.dir/a3m_database_reduce.cpp.o -MF CMakeFiles/a3m_database_reduce-sse.dir/a3m_database_reduce.cpp.o.d -o CMakeFiles/a3m_database_reduce-sse.dir/a3m_database_reduce.cpp.o -c /<>/src/a3m_database_reduce.cpp [ 87%] Linking CXX executable a3m_database_reduce-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_reduce-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_reduce-sse.dir/link.d "CMakeFiles/a3m_database_reduce-sse.dir/a3m_database_reduce.cpp.o" -o a3m_database_reduce-sse ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 87%] Built target a3m_database_reduce-sse make -f src/CMakeFiles/a3m_database_extract-sse.dir/build.make src/CMakeFiles/a3m_database_extract-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/a3m_database_extract-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/a3m_database_extract-sse.dir/build.make src/CMakeFiles/a3m_database_extract-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 88%] Building CXX object src/CMakeFiles/a3m_database_extract-sse.dir/a3m_database_extract.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_extract-sse.dir/a3m_database_extract.cpp.o -MF CMakeFiles/a3m_database_extract-sse.dir/a3m_database_extract.cpp.o.d -o CMakeFiles/a3m_database_extract-sse.dir/a3m_database_extract.cpp.o -c /<>/src/a3m_database_extract.cpp [ 89%] Linking CXX executable a3m_database_extract-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_extract-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_extract-sse.dir/link.d "CMakeFiles/a3m_database_extract-sse.dir/a3m_database_extract.cpp.o" -o a3m_database_extract-sse ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 89%] Built target a3m_database_extract-sse make -f src/CMakeFiles/a3m_database_filter-sse.dir/build.make src/CMakeFiles/a3m_database_filter-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/a3m_database_filter-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/a3m_database_filter-sse.dir/build.make src/CMakeFiles/a3m_database_filter-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 90%] Building CXX object src/CMakeFiles/a3m_database_filter-sse.dir/a3m_database_filter.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/a3m_database_filter-sse.dir/a3m_database_filter.cpp.o -MF CMakeFiles/a3m_database_filter-sse.dir/a3m_database_filter.cpp.o.d -o CMakeFiles/a3m_database_filter-sse.dir/a3m_database_filter.cpp.o -c /<>/src/a3m_database_filter.cpp [ 91%] Linking CXX executable a3m_database_filter-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/a3m_database_filter-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/a3m_database_filter-sse.dir/link.d "CMakeFiles/a3m_database_filter-sse.dir/a3m_database_filter.cpp.o" -o a3m_database_filter-sse ../lib/ffindex/src/libffindex.a libA3M_COMPRESS.a make[4]: Leaving directory '/<>/build_sse' [ 91%] Built target a3m_database_filter-sse make -f src/CMakeFiles/cstranslate-sse.dir/build.make src/CMakeFiles/cstranslate-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/cstranslate-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/cstranslate-sse.dir/build.make src/CMakeFiles/cstranslate-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 92%] Building CXX object src/CMakeFiles/cstranslate-sse.dir/cs/cstranslate_app.cc.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/cstranslate-sse.dir/cs/cstranslate_app.cc.o -MF CMakeFiles/cstranslate-sse.dir/cs/cstranslate_app.cc.o.d -o CMakeFiles/cstranslate-sse.dir/cs/cstranslate_app.cc.o -c /<>/src/cs/cstranslate_app.cc [ 92%] Linking CXX executable cstranslate-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cstranslate-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/cstranslate-sse.dir/link.d "CMakeFiles/cstranslate-sse.dir/cs/cstranslate_app.cc.o" -o cstranslate-sse libHH_OBJECTS.a libA3M_COMPRESS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 92%] Built target cstranslate-sse make -f src/CMakeFiles/hhblits_omp-sse.dir/build.make src/CMakeFiles/hhblits_omp-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhblits_omp-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhblits_omp-sse.dir/build.make src/CMakeFiles/hhblits_omp-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 93%] Building CXX object src/CMakeFiles/hhblits_omp-sse.dir/hhblits_omp.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_omp-sse.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhblits_omp-sse.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhblits_omp-sse.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable hhblits_omp-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_omp-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_omp-sse.dir/link.d "CMakeFiles/hhblits_omp-sse.dir/hhblits_omp.cpp.o" -o hhblits_omp-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 94%] Built target hhblits_omp-sse make -f src/CMakeFiles/hhsearch_omp-sse.dir/build.make src/CMakeFiles/hhsearch_omp-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhsearch_omp-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhsearch_omp-sse.dir/build.make src/CMakeFiles/hhsearch_omp-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 95%] Building CXX object src/CMakeFiles/hhsearch_omp-sse.dir/hhblits_omp.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHSEARCH=1 -MD -MT src/CMakeFiles/hhsearch_omp-sse.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhsearch_omp-sse.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhsearch_omp-sse.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable hhsearch_omp-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhsearch_omp-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhsearch_omp-sse.dir/link.d "CMakeFiles/hhsearch_omp-sse.dir/hhblits_omp.cpp.o" -o hhsearch_omp-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 96%] Built target hhsearch_omp-sse make -f src/CMakeFiles/hhalign_omp-sse.dir/build.make src/CMakeFiles/hhalign_omp-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhalign_omp-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhalign_omp-sse.dir/build.make src/CMakeFiles/hhalign_omp-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 97%] Building CXX object src/CMakeFiles/hhalign_omp-sse.dir/hhblits_omp.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -DHHALIGN=1 -MD -MT src/CMakeFiles/hhalign_omp-sse.dir/hhblits_omp.cpp.o -MF CMakeFiles/hhalign_omp-sse.dir/hhblits_omp.cpp.o.d -o CMakeFiles/hhalign_omp-sse.dir/hhblits_omp.cpp.o -c /<>/src/hhblits_omp.cpp /<>/src/hhblits_omp.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_omp.cpp:26:51: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 26 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhsearch.h:34, from /<>/src/hhblits_omp.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_omp.cpp:26:17, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_omp.cpp:167:33: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable hhalign_omp-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhalign_omp-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhalign_omp-sse.dir/link.d "CMakeFiles/hhalign_omp-sse.dir/hhblits_omp.cpp.o" -o hhalign_omp-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [ 98%] Built target hhalign_omp-sse make -f src/CMakeFiles/hhblits_ca3m-sse.dir/build.make src/CMakeFiles/hhblits_ca3m-sse.dir/depend make[4]: Entering directory '/<>/build_sse' cd /<>/build_sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build_sse /<>/build_sse/src /<>/build_sse/src/CMakeFiles/hhblits_ca3m-sse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/<>/build_sse' make -f src/CMakeFiles/hhblits_ca3m-sse.dir/build.make src/CMakeFiles/hhblits_ca3m-sse.dir/build make[4]: Entering directory '/<>/build_sse' [ 99%] Building CXX object src/CMakeFiles/hhblits_ca3m-sse.dir/hhblits_ca3m.cpp.o cd /<>/build_sse/src && /usr/bin/i686-linux-gnu-g++ -DOPENMP -I/<>/build_sse/generated -I/<>/src -I/<>/lib/ffindex/src -I/<>/lib/simde -I/<>/lib/simd -I/<>/build_sse/src -I/<>/src/cs -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -MD -MT src/CMakeFiles/hhblits_ca3m-sse.dir/hhblits_ca3m.cpp.o -MF CMakeFiles/hhblits_ca3m-sse.dir/hhblits_ca3m.cpp.o.d -o CMakeFiles/hhblits_ca3m-sse.dir/hhblits_ca3m.cpp.o -c /<>/src/hhblits_ca3m.cpp /<>/src/hhblits_ca3m.cpp: In function ‘int main(int, const char**)’: /<>/src/hhblits_ca3m.cpp:24:49: warning: ‘.ffindex’ directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 24 | snprintf(index_filename, FILENAME_MAX, "%s.ffindex", base); | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/stdio.h:970, from /usr/i686-linux-gnu/include/c++/15/cstdio:47, from /usr/i686-linux-gnu/include/c++/15/ext/string_conversions.h:47, from /usr/i686-linux-gnu/include/c++/15/bits/basic_string.h:4444, from /usr/i686-linux-gnu/include/c++/15/string:56, from /usr/i686-linux-gnu/include/c++/15/bits/locale_classes.h:42, from /usr/i686-linux-gnu/include/c++/15/bits/ios_base.h:43, from /usr/i686-linux-gnu/include/c++/15/ios:46, from /usr/i686-linux-gnu/include/c++/15/istream:42, from /usr/i686-linux-gnu/include/c++/15/fstream:42, from /<>/src/hhblits.h:11, from /<>/src/hhblits_ca3m.cpp:8: In function ‘int snprintf(char*, size_t, const char*, ...)’, inlined from ‘void OutputFFIndex::close()’ at /<>/src/hhblits_ca3m.cpp:24:15, inlined from ‘int main(int, const char**)’ at /<>/src/hhblits_ca3m.cpp:358:29: /usr/i686-linux-gnu/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 9 and 4104 bytes into a destination of size 4096 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable hhblits_ca3m-sse cd /<>/build_sse/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/hhblits_ca3m-sse.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -include stdlib.h -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -fsigned-char -fopenmp -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/hhblits_ca3m-sse.dir/link.d "CMakeFiles/hhblits_ca3m-sse.dir/hhblits_ca3m.cpp.o" -o hhblits_ca3m-sse libHH_OBJECTS.a ../lib/ffindex/src/libffindex.a cs/libCS_OBJECTS.a libhhviterbialgorithm_with_celloff.a libhhviterbialgorithm_and_ss.a libhhviterbialgorithm_with_celloff_and_ss.a make[4]: Leaving directory '/<>/build_sse' [100%] Built target hhblits_ca3m-sse make[3]: Leaving directory '/<>/build_sse' /usr/bin/cmake -E cmake_progress_start /<>/build_sse/CMakeFiles 0 make[2]: Leaving directory '/<>/build_sse' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/hhsuite/usr/libexec/hhsuite/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 plain ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_avx2' /usr/bin/cmake -S/<> -B/<>/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Installing: /<>/debian/tmp/usr/data/context_data.crf -- Installing: /<>/debian/tmp/usr/data/context_data.lib -- Installing: /<>/debian/tmp/usr/data/cs219.lib -- Installing: /<>/debian/tmp/usr/data/do_not_delete -- Installing: /<>/debian/tmp/usr/data/do_not_delete.phr -- Installing: /<>/debian/tmp/usr/data/do_not_delete.pin -- Installing: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx2 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx2 -- Installing: /<>/debian/tmp/usr/scripts/a3m.py -- Installing: /<>/debian/tmp/usr/scripts/addss.pl -- Installing: /<>/debian/tmp/usr/scripts/Align.pm -- Installing: /<>/debian/tmp/usr/scripts/check_a3m.py -- Installing: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Installing: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Installing: /<>/debian/tmp/usr/scripts/ffindex.py -- Installing: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Installing: /<>/debian/tmp/usr/scripts/hh_reader.py -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Installing: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Installing: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Installing: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Installing: /<>/debian/tmp/usr/scripts/mergeali.pl -- Installing: /<>/debian/tmp/usr/scripts/multithread.pl -- Installing: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Installing: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Installing: /<>/debian/tmp/usr/scripts/reformat.pl -- Installing: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Installing: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx2' cd build_avx && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_avx' /usr/bin/cmake -S/<> -B/<>/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-avx -- Installing: /<>/debian/tmp/usr/bin/hhmake-avx -- Installing: /<>/debian/tmp/usr/bin/hhfilter-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign-avx -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-avx -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-avx -- Installing: /<>/debian/tmp/usr/bin/cstranslate-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-avx -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-avx -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_avx' cd build_sse4.1 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse4.1' /usr/bin/cmake -S/<> -B/<>/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse4.1 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse4.1 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse4.1' cd build_ssse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_ssse3' /usr/bin/cmake -S/<> -B/<>/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-ssse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-ssse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-ssse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-ssse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_ssse3' cd build_sse3 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse3' /usr/bin/cmake -S/<> -B/<>/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse3 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse3 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse3 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse3 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse3' cd build_plain && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_plain' /usr/bin/cmake -S/<> -B/<>/build_plain --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_plain' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_plain' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-plain -- Installing: /<>/debian/tmp/usr/bin/hhmake-plain -- Installing: /<>/debian/tmp/usr/bin/hhfilter-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign-plain -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-plain -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-plain -- Installing: /<>/debian/tmp/usr/bin/cstranslate-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-plain -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-plain -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_plain' mkdir -p /<>/debian/hhsuite/usr/bin dh_install -phhsuite debian/bin/simd-dispatch /usr/libexec/hhsuite/ for SIMD in sse2 sse ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_sse2 && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse2' /usr/bin/cmake -S/<> -B/<>/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse2 -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse2 -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse2 -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse2 -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse2 -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse2 -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse2' cd build_sse && make -j1 install DESTDIR=/<>/hhsuite-3.3.0\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/<>/build_sse' /usr/bin/cmake -S/<> -B/<>/build_sse --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/build_sse' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/build_sse' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/ffindex_reduce -- Installing: /<>/debian/tmp/usr/bin/ffindex_apply -- Installing: /<>/debian/tmp/usr/bin/ffindex_build -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta -- Installing: /<>/debian/tmp/usr/bin/ffindex_get -- Installing: /<>/debian/tmp/usr/bin/ffindex_modify -- Installing: /<>/debian/tmp/usr/bin/ffindex_unpack -- Installing: /<>/debian/tmp/usr/bin/ffindex_order -- Installing: /<>/debian/tmp/usr/bin/ffindex_from_fasta_with_split -- Up-to-date: /<>/debian/tmp/usr/data/context_data.crf -- Up-to-date: /<>/debian/tmp/usr/data/context_data.lib -- Up-to-date: /<>/debian/tmp/usr/data/cs219.lib -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.phr -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.pin -- Up-to-date: /<>/debian/tmp/usr/data/do_not_delete.psq -- Installing: /<>/debian/tmp/usr/bin/hhblits-sse -- Installing: /<>/debian/tmp/usr/bin/hhmake-sse -- Installing: /<>/debian/tmp/usr/bin/hhfilter-sse -- Installing: /<>/debian/tmp/usr/bin/hhsearch-sse -- Installing: /<>/debian/tmp/usr/bin/hhalign-sse -- Installing: /<>/debian/tmp/usr/bin/hhconsensus-sse -- Installing: /<>/debian/tmp/usr/bin/a3m_extract-sse -- Installing: /<>/debian/tmp/usr/bin/a3m_reduce-sse -- Installing: /<>/debian/tmp/usr/bin/a3m_database_reduce-sse -- Installing: /<>/debian/tmp/usr/bin/a3m_database_extract-sse -- Installing: /<>/debian/tmp/usr/bin/a3m_database_filter-sse -- Installing: /<>/debian/tmp/usr/bin/cstranslate-sse -- Installing: /<>/debian/tmp/usr/bin/hhblits_omp-sse -- Installing: /<>/debian/tmp/usr/bin/hhsearch_omp-sse -- Installing: /<>/debian/tmp/usr/bin/hhalign_omp-sse -- Installing: /<>/debian/tmp/usr/bin/hhblits_ca3m-sse -- Up-to-date: /<>/debian/tmp/usr/scripts/a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/addss.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/Align.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/check_a3m.py -- Up-to-date: /<>/debian/tmp/usr/scripts/cif2fasta.py -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hhm.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/create_profile_from_hmmer.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/ffindex.py -- Up-to-date: /<>/debian/tmp/usr/scripts/get_a3m_size.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hh_reader.py -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/hhmakemodel.py -- Up-to-date: /<>/debian/tmp/usr/scripts/HHPaths.pm -- Up-to-date: /<>/debian/tmp/usr/scripts/hhsuitedb.py -- Up-to-date: /<>/debian/tmp/usr/scripts/mergeali.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/multithread.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdb2fasta.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/pdbfilter.py -- Up-to-date: /<>/debian/tmp/usr/scripts/reformat.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/renumberpdb.pl -- Up-to-date: /<>/debian/tmp/usr/scripts/splitfasta.pl make[2]: Leaving directory '/<>/build_sse' for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter cstranslate ; do dh_install usr/bin/${prog}* /usr/libexec/hhsuite/; done cd /<>/debian/hhsuite/usr/bin \ && for prog in hhalign hhalign_omp hhblits hhblits_omp hhblits_ca3m hhconsensus hhfilter hhmake hhsearch hhsearch_omp a3m_extract a3m_reduce a3m_database_reduce a3m_database_extract a3m_database_filter; do \ ln -s ../libexec/hhsuite/simd-dispatch ${prog} ; done cd /<>/debian/hhsuite/usr/libexec/hhsuite/bin \ && for prog in cstranslate ; do \ ln -s ../simd-dispatch ${prog} ; done dh_install -phhsuite usr/bin/ffindex_* usr/bin/ make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhalign" 'debian/hhsuite/usr/bin/hhalign' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhalign.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhalign Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits" 'debian/hhsuite/usr/bin/hhblits' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhblits_omp" 'debian/hhsuite/usr/bin/hhblits_omp' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhblits_omp.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhblits_omp Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhconsensus" 'debian/hhsuite/usr/bin/hhconsensus' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhconsensus.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhconsensus Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhfilter" 'debian/hhsuite/usr/bin/hhfilter' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhfilter.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhfilter Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhmake" 'debian/hhsuite/usr/bin/hhmake' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhmake.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhmake Try `--no-discard-stderr' if option outputs to stderr export HHLIB=. && help2man --no-info --help-option '-h all' --version-string 3.3.0+ds -n "$n_hhsearch" 'debian/hhsuite/usr/bin/hhsearch' | sed -e 's/\(^\|[^\]\)-/\1\\-/g;' > 'hhsearch.1' help2man: can't get `-h all' info from debian/hhsuite/usr/bin/hhsearch Try `--no-discard-stderr' if option outputs to stderr dh_installman --arch make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/hhsuite/usr/share/hhsuite/scripts/*.pm make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hhsuite' in '../hhsuite_3.3.0+ds-9_i386.deb'. dpkg-deb: building package 'hhsuite-dbgsym' in '../hhsuite-dbgsym_3.3.0+ds-9_i386.deb'. dpkg-genbuildinfo --build=any -O../hhsuite_3.3.0+ds-9_i386.buildinfo dpkg-genchanges --build=any -O../hhsuite_3.3.0+ds-9_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-24T08:03:32Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ---------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hhsuite_3.3.0+ds-9_i386.changes: -------------------------------- Format: 1.8 Date: Fri, 17 Oct 2025 17:36:29 +0200 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 3.3.0+ds-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment Closes: 1112991 Changes: hhsuite (3.3.0+ds-9) unstable; urgency=medium . * Fix build with CMake 4 Closes: #1112991 * d/watch: version=5 * Standards-Version: 4.7.2 (routine-update) * debputy lint --auto-fix (routine-update) Checksums-Sha1: e78d2cb5971123759e38ecc292a6b2f4e7c56d7c 159617320 hhsuite-dbgsym_3.3.0+ds-9_i386.deb 8131dd196024ac4cf680b9d975ed8f1df9babaf9 7107 hhsuite_3.3.0+ds-9_i386.buildinfo 6ecf92887c4e49df560d42f5f8a3bf452094279a 74925832 hhsuite_3.3.0+ds-9_i386.deb Checksums-Sha256: 48d35c84a575ed3563833811c52a962af8eddc501e63e29091960a0c14e6a789 159617320 hhsuite-dbgsym_3.3.0+ds-9_i386.deb c4ed112e34370723bd85d9ed9aa1f4c65d0e5df186ca81edc2584c44bac9de21 7107 hhsuite_3.3.0+ds-9_i386.buildinfo 23673e8ef560c0337d3c9145d6d0a4539b3699d82526a944b7bde7928e0540d8 74925832 hhsuite_3.3.0+ds-9_i386.deb Files: 4f8cbe5aeb8d80a6d8b147079880be93 159617320 debug optional hhsuite-dbgsym_3.3.0+ds-9_i386.deb 8cee9d90b8e71fce155994c7098189bf 7107 science optional hhsuite_3.3.0+ds-9_i386.buildinfo e8940aa4f464e6d3b191c5c82568d3b3 74925832 science optional hhsuite_3.3.0+ds-9_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hhsuite Binary: hhsuite hhsuite-dbgsym Architecture: i386 Version: 3.3.0+ds-9 Checksums-Md5: 4f8cbe5aeb8d80a6d8b147079880be93 159617320 hhsuite-dbgsym_3.3.0+ds-9_i386.deb e8940aa4f464e6d3b191c5c82568d3b3 74925832 hhsuite_3.3.0+ds-9_i386.deb Checksums-Sha1: e78d2cb5971123759e38ecc292a6b2f4e7c56d7c 159617320 hhsuite-dbgsym_3.3.0+ds-9_i386.deb 6ecf92887c4e49df560d42f5f8a3bf452094279a 74925832 hhsuite_3.3.0+ds-9_i386.deb Checksums-Sha256: 48d35c84a575ed3563833811c52a962af8eddc501e63e29091960a0c14e6a789 159617320 hhsuite-dbgsym_3.3.0+ds-9_i386.deb 23673e8ef560c0337d3c9145d6d0a4539b3699d82526a944b7bde7928e0540d8 74925832 hhsuite_3.3.0+ds-9_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 24 Oct 2025 08:03:25 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-8), binutils-aarch64-linux-gnu (= 2.45-8), binutils-common (= 2.45-8), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 4.1.1+really3.31.6-2), cmake-data (= 4.1.1+really3.31.6-2), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-7), cpp-15-aarch64-linux-gnu (= 15.2.0-7), cpp-aarch64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.4), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-7), g++-15-aarch64-linux-gnu (= 15.2.0-7), g++-aarch64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-7), gcc-15-aarch64-linux-gnu (= 15.2.0-7), gcc-15-base (= 15.2.0-7), gcc-aarch64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), help2man (= 1.49.3+b1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25), imagemagick (= 8:7.1.2.7+dfsg1-1), imagemagick-7-common (= 8:7.1.2.7+dfsg1-1), imagemagick-7.q16 (= 8:7.1.2.7+dfsg1-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-4+b1), libasan8 (= 15.2.0-7), libatomic1 (= 15.2.0-7), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-8), libblkid1 (= 2.41.2-4), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-7), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libcurl4t64 (= 8.17.0~rc2-1), libdav1d7 (= 1.5.1-1), libdb5.3t64 (= 5.3.28+dfsg2-10), libde265-0 (= 1.0.16-1), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfftw3-double3 (= 3.3.10-2+b1), libfile-stripnondeterminism-perl (= 1.15.0-1), libfontconfig1 (= 2.15.0-2.4), libfreetype6 (= 2.13.3+dfsg-1), libgcc-15-dev (= 15.2.0-7), libgcc-s1 (= 15.2.0-7), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libglib2.0-0t64 (= 2.86.1-1), libgmp10 (= 2:6.3.0+dfsg-5), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-7), libgprofng0 (= 2.45-8), libgssapi-krb5-2 (= 1.21.3-5), libheif-plugin-dav1d (= 1.20.2-2+b1), libheif-plugin-libde265 (= 1.20.2-2+b1), libheif1 (= 1.20.2-2+b1), libhogweed6t64 (= 3.10.2-1), libhwasan0 (= 15.2.0-7), libidn2-0 (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-7), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-4), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblcms2-2 (= 2.16-2), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5), liblocale-gettext-perl (= 1.07-7+b1), liblqr-1-0 (= 0.4.2-2.1+b2), liblsan0 (= 15.2.0-7), libltdl7 (= 2.5.4-7), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmagickcore-7.q16-10 (= 8:7.1.2.7+dfsg1-1), libmagickwand-7.q16-10 (= 8:7.1.2.7+dfsg1-1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libopenjp2-7 (= 2.5.3-2.1), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpng16-16t64 (= 1.6.50-1), libproc2-0 (= 2:4.0.4-9), libpsl5t64 (= 0.21.2-1.1+b1), libraw23t64 (= 0.21.4-2), librhash1 (= 1.4.6-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsharpyuv0 (= 1.5.0-0.1), libsimde-dev (= 0.8.2-3), libsmartcols1 (= 2.41.2-4), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-7), libstdc++6 (= 15.2.0-7), libsystemd0 (= 258.1-1), libtasn1-6 (= 4.20.0-2), libtiff6 (= 4.7.1-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-7), libubsan1 (= 15.2.0-7), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libuv1t64 (= 1.51.0-2), libwebp7 (= 1.5.0-0.1), libwebpdemux2 (= 1.5.0-0.1), libwebpmux3 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxml2-16 (= 2.14.6+dfsg-0.1), libxxhash0 (= 0.8.3-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.12-2), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-5), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1760715389" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hhsuite-dbgsym_3.3.0+ds-9_i386.deb ---------------------------------- new Debian package, version 2.0. size 159617320 bytes: control archive=6532 bytes. 5954 bytes, 12 lines control 14604 bytes, 138 lines md5sums Package: hhsuite-dbgsym Source: hhsuite Version: 3.3.0+ds-9 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 726477 Depends: hhsuite (= 3.3.0+ds-9) Section: debug Priority: optional Description: debug symbols for hhsuite Build-Ids: 01b2af97fe0e033c70004ac14cae0baef7a86586 05b1c7563563522635125a5ef8856df9b3be3cbc 065ebbdaaaaf6ef1c191b5a03be41d95fe39fd2f 0a1c02925c3856238ee11849a5ff03039b7ea881 0da0b67541e364504bf2549a3a1d8e5172e89b01 0f62e68f41b6855a6fedd40f735958ccd712e2ee 1181e80ae48230aa8b0f0f9730706751bf5da46f 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drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite-dbgsym -> hhsuite hhsuite_3.3.0+ds-9_i386.deb --------------------------- new Debian package, version 2.0. size 74925832 bytes: control archive=5136 bytes. 1471 bytes, 29 lines control 12668 bytes, 178 lines md5sums Package: hhsuite Version: 3.3.0+ds-9 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 627754 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 14), perl:any, hhsuite-data (= 3.3.0+ds-9), python3 Conflicts: ffindex Built-Using: simde (= 0.8.2-3) Section: science Priority: optional Homepage: https://toolkit.tuebingen.mpg.de/ Description: sensitive protein sequence searching based on HMM-HMM alignment HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). . This package contains HHsearch and HHblits among other programs and utilities. . HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling. . HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments. drwxr-xr-x root/root 0 2025-10-17 15:36 ./ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/bin/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_filter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_database_reduce -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_extract -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/a3m_reduce -> ../libexec/hhsuite/simd-dispatch -rwxr-xr-x root/root 30348 2025-10-17 15:36 ./usr/bin/ffindex_apply -rwxr-xr-x root/root 30380 2025-10-17 15:36 ./usr/bin/ffindex_build -rwxr-xr-x root/root 30316 2025-10-17 15:36 ./usr/bin/ffindex_from_fasta -rwxr-xr-x root/root 30244 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0 2025-10-17 15:36 ./usr/bin/hhfilter -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhmake -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhsearch -> ../libexec/hhsuite/simd-dispatch lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/bin/hhsearch_omp -> ../libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/lib/hh -> hhsuite drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/data/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete -rw-r--r-- root/root 135 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.phr -rw-r--r-- root/root 112 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.pin -rw-r--r-- root/root 433 2020-08-16 23:16 ./usr/lib/hhsuite/data/do_not_delete.psq lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/lib/hhsuite/scripts -> ../../share/hhsuite/scripts drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/ -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-avx -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-avx2 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-plain -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse2 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse3 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-sse4.1 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_extract-ssse3 -rwxr-xr-x root/root 63072 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-avx -rwxr-xr-x root/root 63072 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-avx2 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-plain -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-sse -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-sse2 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-sse3 -rwxr-xr-x root/root 63072 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-sse4.1 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_filter-ssse3 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-avx -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-avx2 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-plain -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-sse -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-sse2 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-sse3 -rwxr-xr-x root/root 58976 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-sse4.1 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_database_reduce-ssse3 -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-avx -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-avx2 -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-plain -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse2 -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse3 -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-sse4.1 -rwxr-xr-x root/root 50784 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_extract-ssse3 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-avx -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-avx2 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-plain -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse2 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse3 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-sse4.1 -rwxr-xr-x root/root 54880 2025-10-17 15:36 ./usr/libexec/hhsuite/a3m_reduce-ssse3 drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/bin/ lrwxrwxrwx root/root 0 2025-10-17 15:36 ./usr/libexec/hhsuite/bin/cstranslate -> ../simd-dispatch -rwxr-xr-x root/root 6285000 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-avx -rwxr-xr-x root/root 6276808 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-avx2 -rwxr-xr-x root/root 6264520 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-plain -rwxr-xr-x root/root 6268616 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse -rwxr-xr-x root/root 6264520 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse2 -rwxr-xr-x root/root 6264520 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse3 -rwxr-xr-x root/root 6276808 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-sse4.1 -rwxr-xr-x root/root 6264520 2025-10-17 15:36 ./usr/libexec/hhsuite/cstranslate-ssse3 -rwxr-xr-x root/root 8316580 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-avx -rwxr-xr-x root/root 8287908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-avx2 -rwxr-xr-x root/root 8337060 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-plain -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse2 -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse3 -rwxr-xr-x root/root 8312484 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-sse4.1 -rwxr-xr-x root/root 8275620 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign-ssse3 -rwxr-xr-x root/root 8324772 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-avx -rwxr-xr-x root/root 8296100 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-avx2 -rwxr-xr-x root/root 8345252 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-plain -rwxr-xr-x root/root 8287908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse -rwxr-xr-x root/root 8287908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse2 -rwxr-xr-x root/root 8287908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse3 -rwxr-xr-x root/root 8324772 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-sse4.1 -rwxr-xr-x root/root 8283812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhalign_omp-ssse3 -rwxr-xr-x root/root 8259236 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-avx -rwxr-xr-x root/root 8234660 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-avx2 -rwxr-xr-x root/root 8283812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-plain -rwxr-xr-x root/root 8230564 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse -rwxr-xr-x root/root 8226468 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse2 -rwxr-xr-x root/root 8226468 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse3 -rwxr-xr-x root/root 8259236 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-sse4.1 -rwxr-xr-x root/root 8226468 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits-ssse3 -rwxr-xr-x root/root 8271524 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-avx -rwxr-xr-x root/root 8242852 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-avx2 -rwxr-xr-x root/root 8292004 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-plain -rwxr-xr-x root/root 8234660 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse -rwxr-xr-x root/root 8230564 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse2 -rwxr-xr-x root/root 8230564 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse3 -rwxr-xr-x root/root 8263332 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-sse4.1 -rwxr-xr-x root/root 8230564 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_ca3m-ssse3 -rwxr-xr-x root/root 8271524 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-avx -rwxr-xr-x root/root 8242852 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-avx2 -rwxr-xr-x root/root 8292004 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-plain -rwxr-xr-x root/root 8238756 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse -rwxr-xr-x root/root 8234660 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse2 -rwxr-xr-x root/root 8234660 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse3 -rwxr-xr-x root/root 8267428 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-sse4.1 -rwxr-xr-x root/root 8234660 2025-10-17 15:36 ./usr/libexec/hhsuite/hhblits_omp-ssse3 -rwxr-xr-x root/root 7706272 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-avx -rwxr-xr-x root/root 7689888 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-avx2 -rwxr-xr-x root/root 7673504 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-plain -rwxr-xr-x root/root 7669408 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse -rwxr-xr-x root/root 7673504 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse2 -rwxr-xr-x root/root 7673504 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse3 -rwxr-xr-x root/root 7702176 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-sse4.1 -rwxr-xr-x root/root 7673504 2025-10-17 15:36 ./usr/libexec/hhsuite/hhconsensus-ssse3 -rwxr-xr-x root/root 399004 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-avx -rwxr-xr-x root/root 394908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-avx2 -rwxr-xr-x root/root 390812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-plain -rwxr-xr-x root/root 386716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse -rwxr-xr-x root/root 390812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse2 -rwxr-xr-x root/root 390812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse3 -rwxr-xr-x root/root 399004 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-sse4.1 -rwxr-xr-x root/root 390812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhfilter-ssse3 -rwxr-xr-x root/root 7681696 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-avx -rwxr-xr-x root/root 7665312 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-avx2 -rwxr-xr-x root/root 7648928 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-plain -rwxr-xr-x root/root 7644832 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse -rwxr-xr-x root/root 7648928 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse2 -rwxr-xr-x root/root 7648928 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse3 -rwxr-xr-x root/root 7681696 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-sse4.1 -rwxr-xr-x root/root 7648928 2025-10-17 15:36 ./usr/libexec/hhsuite/hhmake-ssse3 -rwxr-xr-x root/root 8308388 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-avx -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-avx2 -rwxr-xr-x root/root 8332964 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-plain -rwxr-xr-x root/root 8275620 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse -rwxr-xr-x root/root 8271524 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse2 -rwxr-xr-x root/root 8271524 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse3 -rwxr-xr-x root/root 8304292 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-sse4.1 -rwxr-xr-x root/root 8271524 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch-ssse3 -rwxr-xr-x root/root 8312484 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-avx -rwxr-xr-x root/root 8287908 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-avx2 -rwxr-xr-x root/root 8341156 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-plain -rwxr-xr-x root/root 8283812 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse2 -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse3 -rwxr-xr-x root/root 8312484 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-sse4.1 -rwxr-xr-x root/root 8279716 2025-10-17 15:36 ./usr/libexec/hhsuite/hhsearch_omp-ssse3 -rwxr-xr-x root/root 453 2025-10-17 15:36 ./usr/libexec/hhsuite/simd-dispatch drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite/ -rw-r--r-- root/root 1986 2020-08-16 23:16 ./usr/share/doc/hhsuite/README.md.gz -rw-r--r-- root/root 1909 2025-10-17 15:36 ./usr/share/doc/hhsuite/changelog.Debian.gz -rw-r--r-- root/root 20399 2025-10-17 15:36 ./usr/share/doc/hhsuite/copyright drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/doc/hhsuite/examples/ -rw-r--r-- root/root 32126 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.a3m -rw-r--r-- root/root 57578 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhm -rw-r--r-- root/root 181765 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.hhr -rw-r--r-- root/root 506 2020-08-16 23:16 ./usr/share/doc/hhsuite/examples/query.seq drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/hhsuite/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/hhsuite/scripts/ -rw-r--r-- root/root 24577 2020-08-16 23:16 ./usr/share/hhsuite/scripts/Align.pm -rw-r--r-- root/root 4710 2020-08-16 23:16 ./usr/share/hhsuite/scripts/HHPaths.pm -rwxr-xr-x root/root 8021 2025-10-17 15:36 ./usr/share/hhsuite/scripts/a3m.py -rwxr-xr-x root/root 31681 2025-10-17 15:36 ./usr/share/hhsuite/scripts/addss.pl -rwxr-xr-x root/root 438 2025-10-17 15:36 ./usr/share/hhsuite/scripts/check_a3m.py -rwxr-xr-x root/root 28735 2025-10-17 15:36 ./usr/share/hhsuite/scripts/cif2fasta.py -rwxr-xr-x root/root 4654 2025-10-17 15:36 ./usr/share/hhsuite/scripts/create_profile_from_hhm.pl -rwxr-xr-x root/root 6815 2025-10-17 15:36 ./usr/share/hhsuite/scripts/create_profile_from_hmmer.pl -rwxr-xr-x root/root 2081 2025-10-17 15:36 ./usr/share/hhsuite/scripts/ffindex.py -rwxr-xr-x root/root 446 2025-10-17 15:36 ./usr/share/hhsuite/scripts/get_a3m_size.py -rwxr-xr-x root/root 7179 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hh_reader.py -rwxr-xr-x root/root 48079 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhmakemodel.pl -rwxr-xr-x root/root 87343 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhmakemodel.py -rwxr-xr-x root/root 16961 2025-10-17 15:36 ./usr/share/hhsuite/scripts/hhsuitedb.py -rwxr-xr-x root/root 20214 2020-08-16 23:16 ./usr/share/hhsuite/scripts/mergeali.pl -rwxr-xr-x root/root 5717 2025-10-17 15:36 ./usr/share/hhsuite/scripts/multithread.pl -rwxr-xr-x root/root 40490 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdb2fasta.pl -rwxr-xr-x root/root 13183 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdbfilter.pl -rwxr-xr-x root/root 8648 2025-10-17 15:36 ./usr/share/hhsuite/scripts/pdbfilter.py -rwxr-xr-x root/root 28328 2020-08-16 23:16 ./usr/share/hhsuite/scripts/reformat.pl -rwxr-xr-x root/root 14019 2025-10-17 15:36 ./usr/share/hhsuite/scripts/renumberpdb.pl -rwxr-xr-x root/root 3651 2025-10-17 15:36 ./usr/share/hhsuite/scripts/splitfasta.pl drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/man/ drwxr-xr-x root/root 0 2025-10-17 15:36 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhalign.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhblits.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhblits_omp.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhconsensus.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhfilter.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhmake.1.gz -rw-r--r-- root/root 20 2025-10-17 15:36 ./usr/share/man/man1/hhsearch.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1337 B] Get:5 copy:/<>/apt_archive ./ Packages [1414 B] Fetched 3366 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 shared-mime-info t1utils ucf unzip 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. Need to get 16.9 MB of archives. After this operation, 74.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get:7 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:8 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b3 [755 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc2-1 [363 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libfyaml0 arm64 0.9-2 [194 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libstemmer0d arm64 3.0.1-1 [126 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libxmlb2 arm64 0.3.24-1 [63.2 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libappstream5 arm64 1.1.1-1 [210 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 appstream arm64 1.1.1-1 [560 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.68-1 [32.8 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.56-2 [84.0 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libassuan9 arm64 3.0.2-2 [59.1 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.4.8-4 [121 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-3 [22.9 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-8 [884 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.4.8-4 [573 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.18.0-1 [3125 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.42 [64.3 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:38 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.66-1 [115 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.71-1 [217 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:47 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:57 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.40-1 [129 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-3 [31.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b5 [97.7 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.85-1 [23.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:77 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:78 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-4 [25.6 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:94 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.24-1 [23.2 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.81-1 [186 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15-3 [37.8 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:117 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.637-1 [41.5 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:130 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.49-1 [64.3 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.31-1 [27.2 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:134 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1 [13.2 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-3 [19.9 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.20-1 [117 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-6 [299 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.904.0+ds-1 [43.6 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.12-3 [60.0 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.3-1 [74.4 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:150 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get:151 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.127.0 [1066 kB] Preconfiguring packages ... Fetched 16.9 MB in 2s (10.6 MB/s) Selecting previously unselected package netbase. (Reading database ... 24579 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.5.4-1_arm64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../004-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package gpgconf. Preparing to unpack .../020-gpgconf_2.4.8-4_arm64.deb ... Unpacking gpgconf (2.4.8-4) ... Selecting previously unselected package libksba8:arm64. Preparing to unpack .../021-libksba8_1.6.7-2+b1_arm64.deb ... Unpacking libksba8:arm64 (1.6.7-2+b1) ... Selecting previously unselected package libnpth0t64:arm64. 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Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libnpth0t64:arm64 (1.8-3) ... Setting up libunicode-utf8-perl (0.62-3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libgpg-error0:arm64 (1.56-2) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libxmlb2:arm64 (0.3.24-1) ... Setting up libdevel-size-perl (0.85-1) ... Setting up unzip (6.0-29) ... Setting up libsqlite3-0:arm64 (3.46.1-8) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.11.2-2) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:arm64 (0.9-2) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.3-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-4) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4+b1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up diffstat (1.68-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up ucf (3.0052) ... 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Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libstemmer0d:arm64 (3.0.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.4-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.3-3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2.1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.18.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc2-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libappstream5:arm64 (1.1.1-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up appstream (1.1.1-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.4.8-4) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up gpg (2.4.8-4) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.81-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.20-1) ... Setting up lintian (2.127.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 5713 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 81 Job: hhsuite_3.3.0+ds-9 Lintian: pass Machine Architecture: arm64 Package: hhsuite Package-Time: 5866 Source-Version: 3.3.0+ds-9 Space: n/a Status: successful Version: 3.3.0+ds-9 -------------------------------------------------------------------------------- Finished at 2025-10-24T08:03:32Z Build needed 01:37:46, no disk space