sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley
+==============================================================================+
| hmmer2 2.3.2+dfsg-7 (armel) Mon, 05 Dec 2022 08:02:11 +0000 |
+==============================================================================+
Package: hmmer2
Version: 2.3.2+dfsg-7
Source Version: 2.3.2+dfsg-7
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-c690c348-aeb5-420b-bef3-807c0ac0ab6d' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/hmmer2-ubH0uJ/resolver-sE56Ea' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://localhost:3142/debian sid InRelease [161 kB]
Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2022-12-05-0203.20-F-2022-12-05-0203.20.pdiff [26.2 kB]
Get:4 http://localhost:3142/debian sid/main Sources T-2022-12-05-0203.20-F-2022-12-05-0203.20.pdiff [26.2 kB]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-12-05-0203.20-F-2022-12-05-0203.20.pdiff [20.7 kB]
Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-12-05-0203.20-F-2022-12-05-0203.20.pdiff [20.7 kB]
Get:6 http://localhost:3142/debian sid/main armel Packages [8983 kB]
Fetched 9318 kB in 2s (4845 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'hmmer2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/hmmer2.git
Please use:
git clone https://salsa.debian.org/med-team/hmmer2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 348 kB of source archives.
Get:1 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-7 (dsc) [2268 B]
Get:2 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-7 (tar) [332 kB]
Get:3 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-7 (diff) [14.2 kB]
Fetched 348 kB in 0s (7347 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/hmmer2-ubH0uJ/hmmer2-2.3.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/hmmer2-ubH0uJ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [439 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [532 B]
Fetched 1928 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
crossbuild-essential-armel debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi
g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi
gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base
gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel
libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel
libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl
libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl
libdebian-dpkgcross-perl libelf1 libfile-homedir-perl
libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel
libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross
libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72
libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1
libnsl-dev:armel libnsl2:armel libperl4-corelibs-perl libpipeline1
libpkgconf3 libsquid-dev:armel libsquid1:armel libssl3:armel
libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel
libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel
libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0
libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel
linux-libc-dev-armel-cross m4 man-db pkg-config:armel pkgconf:armel
pkgconf-bin po-debconf rename sensible-utils ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex
bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev
libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel
libnss-nis:armel libnss-nisplus:armel manpages-dev:armel krb5-doc:armel
krb5-user:armel biosquid:armel libstdc++-11-doc:armel libtool-doc gfortran
| fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libidn2-0:armel libarchive-cpio-perl krb5-locales:armel
libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl
| libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
bsdextrautils cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
crossbuild-essential-armel debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi
g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi
gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base
gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libasan6:armel libasan8-armel-cross libatomic1:armel
libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev:armel
libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl
libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdebhelper-perl
libdebian-dpkgcross-perl libelf1 libfile-homedir-perl
libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel
libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross
libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu72
libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel
libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1
libnsl-dev:armel libnsl2:armel libperl4-corelibs-perl libpipeline1
libpkgconf3 libsquid-dev:armel libsquid1:armel libssl3:armel
libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel
libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel
libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0
libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel
linux-libc-dev-armel-cross m4 man-db pkg-config:armel pkgconf:armel
pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy:armel
sensible-utils ucf
0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
Need to get 83.1 MB of archives.
After this operation, 337 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B]
Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB]
Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB]
Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB]
Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB]
Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB]
Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB]
Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB]
Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB]
Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB]
Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.1-1 [1384 kB]
Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB]
Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB]
Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB]
Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB]
Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.39-8 [3232 kB]
Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi-base amd64 12.2.0-9cross2 [37.3 kB]
Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [8663 kB]
Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:12.2.0-1 [17.2 kB]
Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.19 [16.3 kB]
Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-9cross2 [32.8 kB]
Get:25 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.36-3cross1 [885 kB]
Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 12.2.0-9cross2 [38.4 kB]
Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 12.2.0-9cross2 [96.8 kB]
Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 12.2.0-9cross2 [8912 B]
Get:29 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 12.2.0-9cross2 [2092 kB]
Get:30 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 12.2.0-9cross2 [464 kB]
Get:31 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 12.2.0-9cross2 [862 kB]
Get:32 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armel-cross all 12.2.0-9cross2 [732 kB]
Get:33 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [17.0 MB]
Get:34 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:12.2.0-1 [1452 B]
Get:35 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.0.6-2cross1 [1763 kB]
Get:36 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.36-3cross1 [1284 kB]
Get:37 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armel-cross all 12.2.0-9cross2 [2033 kB]
Get:38 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [9594 kB]
Get:39 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:12.2.0-1 [1176 B]
Get:40 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:41 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:42 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB]
Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB]
Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB]
Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB]
Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.19 [15.3 kB]
Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.19 [25.6 kB]
Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.9 [6704 B]
Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.1 [80.8 kB]
Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB]
Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B]
Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:63 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-1 [172 kB]
Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB]
Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB]
Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.1 [941 kB]
Get:69 http://localhost:3142/debian sid/main amd64 dh-exec amd64 0.27 [27.8 kB]
Get:70 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.3.0-8 [209 kB]
Get:71 http://localhost:3142/debian sid/main armel gcc-12-base armel 12.2.0-9 [37.1 kB]
Get:72 http://localhost:3142/debian sid/main armel libgcc-s1 armel 12.2.0-9 [38.4 kB]
Get:73 http://localhost:3142/debian sid/main armel libc6 armel 2.36-6 [2184 kB]
Get:74 http://localhost:3142/debian sid/main armel libasan6 armel 11.3.0-8 [1945 kB]
Get:75 http://localhost:3142/debian sid/main armel libatomic1 armel 12.2.0-9 [9152 B]
Get:76 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.0.10-2 [1650 kB]
Get:77 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.33-1 [96.0 kB]
Get:78 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.33-1 [125 kB]
Get:79 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.46.6~rc1-1+b1 [14.2 kB]
Get:80 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-1 [29.2 kB]
Get:81 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-1 [74.0 kB]
Get:82 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-1 [14.8 kB]
Get:83 http://localhost:3142/debian sid/main armel libssl3 armel 3.0.7-1 [1621 kB]
Get:84 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-1 [284 kB]
Get:85 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-1 [110 kB]
Get:86 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.3+ds-1 [72.0 kB]
Get:87 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-2 [33.0 kB]
Get:88 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.3+ds-1 [182 kB]
Get:89 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-2 [61.7 kB]
Get:90 http://localhost:3142/debian sid/main armel libc6-dev armel 2.36-6 [1287 kB]
Get:91 http://localhost:3142/debian sid/main armel libgomp1 armel 12.2.0-9 [99.6 kB]
Get:92 http://localhost:3142/debian sid/main armel libstdc++6 armel 12.2.0-9 [506 kB]
Get:93 http://localhost:3142/debian sid/main armel libubsan1 armel 12.2.0-9 [863 kB]
Get:94 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.3.0-8 [702 kB]
Get:95 http://localhost:3142/debian sid/main amd64 libperl4-corelibs-perl all 0.004-3 [38.5 kB]
Get:96 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.0-11 [35.7 kB]
Get:97 http://localhost:3142/debian sid/main armel libsquid1 armel 1.9g+cvs20050121-12 [66.4 kB]
Get:98 http://localhost:3142/debian sid/main armel libsquid-dev armel 1.9g+cvs20050121-12 [134 kB]
Get:99 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.3.0-8 [1974 kB]
Get:100 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.0-11 [29.2 kB]
Get:101 http://localhost:3142/debian sid/main armel pkgconf armel 1.8.0-11 [25.6 kB]
Get:102 http://localhost:3142/debian sid/main armel pkg-config armel 1.8.0-11 [13.4 kB]
Get:103 http://localhost:3142/debian sid/main amd64 rename all 1.31-1 [22.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 83.1 MB in 1s (70.0 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 15686 files and directories currently installed.)
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Setting up dpkg-cross (2.6.19) ...
Setting up crossbuild-essential-armel (12.9) ...
Setting up libgcc-s1:armel (12.2.0-9) ...
Setting up libc6:armel (2.36-6) ...
Setting up libsquid1:armel (1.9g+cvs20050121-12) ...
Setting up libstdc++6:armel (12.2.0-9) ...
Setting up libkeyutils1:armel (1.6.3-1) ...
Setting up libcrypt1:armel (1:4.4.33-1) ...
Setting up libcom-err2:armel (1.46.6~rc1-1+b1) ...
Setting up libgomp1:armel (12.2.0-9) ...
Setting up libsquid-dev:armel (1.9g+cvs20050121-12) ...
Setting up libasan6:armel (11.3.0-8) ...
Setting up libkrb5support0:armel (1.20.1-1) ...
Setting up libatomic1:armel (12.2.0-9) ...
Setting up libk5crypto3:armel (1.20.1-1) ...
Setting up libubsan1:armel (12.2.0-9) ...
Setting up libgcc-11-dev:armel (11.3.0-8) ...
Setting up libcrypt-dev:armel (1:4.4.33-1) ...
Setting up libssl3:armel (3.0.7-1) ...
Setting up libkrb5-3:armel (1.20.1-1) ...
Setting up libgssapi-krb5-2:armel (1.20.1-1) ...
Setting up libtirpc3:armel (1.3.3+ds-1) ...
Setting up libtirpc-dev:armel (1.3.3+ds-1) ...
Setting up libnsl2:armel (1.3.0-2) ...
Setting up libnsl-dev:armel (1.3.0-2) ...
Setting up libc6-dev:armel (2.36-6) ...
Setting up libstdc++-11-dev:armel (11.3.0-8) ...
Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armel included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64)
Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.11 g++-11_11.3.0-8 g++-12_12.2.0-9 gcc-11_11.3.0-8 gcc-12_12.2.0-9 libc6-dev_2.36-6 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 linux-libc-dev_6.0.10-2
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-2+b1 binutils_2.39-8 binutils-arm-linux-gnueabi_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-9 cpp-12-arm-linux-gnueabi_12.2.0-9cross2 cpp-arm-linux-gnueabi_4:12.2.0-1 cross-config_2.6.19 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.11 dpkg-cross_2.6.19 dpkg-dev_1.21.11 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.30.1-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-9 g++-12-arm-linux-gnueabi_12.2.0-9cross2 g++-arm-linux-gnueabi_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-9 gcc-12-arm-linux-gnueabi_12.2.0-9cross2 gcc-12-arm-linux-gnueabi-base_12.2.0-9cross2 gcc-12-base_12.2.0-9 gcc-12-cross-base_12.2.0-9cross2 gcc-9-base_9.5.0-2+b2 gcc-arm-linux-gnueabi_4:12.2.0-1 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-9 libasan8-armel-cross_12.2.0-9cross2 libatomic1_12.2.0-9 libatomic1-armel-cross_12.2.0-9cross2 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbinutils_2.39-8 libblkid1_2.38.1-4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-6 libc-dev-bin_2.36-6 libc6_2.36-6 libc6-armel-cross_2.36-3cross1 libc6-dev_2.36-6 libc6-dev-armel-cross_2.36-3cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.44-1 libcc1-0_12.2.0-9 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39-8 libctf0_2.39-8 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.1 libdebian-dpkgcross-perl_2.6.19 libdpkg-perl_1.21.11 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.30.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.0-2 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-9 libgcc-12-dev-armel-cross_12.2.0-9cross2 libgcc-s1_12.2.0-9 libgcc-s1-armel-cross_12.2.0-9cross2 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-9 libgomp1-armel-cross_12.2.0-9cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-9 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-9 liblz4-1_1.9.4-1 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl4-corelibs-perl_0.004-3 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-11 libquadmath0_12.2.0-9 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b3 libsemanage-common_3.4-1 libsemanage2_3.4-1+b3 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.46.6~rc1-1+b1 libssl3_3.0.7-1 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 libsub-override-perl_0.09-4 libsystemd0_252.2-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-8 libtsan2_12.2.0-9 libubsan1_12.2.0-9 libubsan1-armel-cross_12.2.0-9cross2 libuchardet0_0.0.7-1 libudev1_252.2-1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.10-2 linux-libc-dev-armel-cross_6.0.6-2cross1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 rename_1.31-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-7 tar_1.34+dfsg-1.1 tzdata_2022f-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: hmmer2
Binary: hmmer2, hmmer2-doc, libhmmer2-dev
Architecture: any all
Version: 2.3.2+dfsg-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Laszlo Kajan <lkajan@debian.org>
Homepage: http://hmmer.janelia.org/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/hmmer2
Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config
Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename
Package-List:
hmmer2 deb science optional arch=any
hmmer2-doc deb doc optional arch=all
libhmmer2-dev deb libdevel optional arch=any
Checksums-Sha1:
7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
8b8be7c85950037ee38b0834a9f912b01299a921 14160 hmmer2_2.3.2+dfsg-7.debian.tar.xz
Checksums-Sha256:
f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
5b652ba701a43cb03ab6b7d9773a2edc4998cc823e8cb0656fb4a321f29ec54f 14160 hmmer2_2.3.2+dfsg-7.debian.tar.xz
Files:
4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
43fb94be1b5017bdb0f8fd5f44607c6c 14160 hmmer2_2.3.2+dfsg-7.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-gpg-verify.pNH9UIzz/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep 9 18:59:30 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hmmer2_2.3.2+dfsg-7.dsc: no acceptable signature found
dpkg-source: info: extracting hmmer2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying version2-manpage
dpkg-source: info: applying userguidepdf
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying use_debian_packaged_biosquid.patch
dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch
dpkg-source: info: applying add-runstatedir-option.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-c690c348-aeb5-420b-bef3-807c0ac0ab6d
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package hmmer2
dpkg-buildpackage: info: source version 2.3.2+dfsg-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --enable-threads --enable-lfs
configure: loading site script /etc/dpkg-cross/cross-config.armel
configure: configuring HMMER for your system.
configure: This is a full source distribution - using full config
checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether arm-linux-gnueabi-gcc accepts -g... yes
checking for arm-linux-gnueabi-gcc option to accept ANSI C... none needed
checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib
checking for ar... /usr/bin/ar
checking build system type... x86_64-pc-linux-gnu
checking host system type... arm-unknown-linux-gnueabi
checking whether your make is GNU make... yes, it is.
configure: configured for optional LFS, large file support
configure: enabled POSIX multithreading support
checking for pthread_setconcurrency... yes
checking for pthread_attr_setscope... yes
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... arm-linux-gnueabi-gcc
checking for ntohs... yes
checking for ntohl... yes
checking for htons... yes
checking for htonl... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating Makefile
config.status: creating src/config.h
# avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together)
sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \
-e '/^#define PACKAGE_NAME /a #endif' \
-e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \
-e '/^#define PACKAGE_VERSION /a #endif' \
-e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \
-e '/^#define _LARGEFILE_SOURCE /a #endif' \
-e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \
-e '/^#define _LARGEFILE64_SOURCE /a #endif' \
-e '/^#define VERSION /i #ifndef VERSION' \
-e '/^#define VERSION /a #endif' \
src/config.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
hmmalign.c:19:10: fatal error: squidconf.h: No such file or directory
19 | #include "squidconf.h"
| ^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:89: hmmalign.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
alphabet.c:17:10: fatal error: squidconf.h: No such file or directory
17 | #include "squidconf.h"
| ^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:89: alphabet.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/testsuite'
arm-linux-gnueabi-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
In file included from alignalign_test.c:27:
../src/structs.h:24:10: fatal error: squid.h: No such file or directory
24 | #include "squid.h"
| ^~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:43: alignalign_test.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/testsuite'
make[1]: *** [Makefile:84: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 returned exit code 2
make: *** [debian/rules:13: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-12-05T08:02:34Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 2800
Build-Time: 2
Distribution: unstable
Fail-Stage: build
Foreign Architectures: armel
Host Architecture: armel
Install-Time: 11
Job: hmmer2_2.3.2+dfsg-7
Machine Architecture: amd64
Package: hmmer2
Package-Time: 23
Source-Version: 2.3.2+dfsg-7
Space: 2800
Status: attempted
Version: 2.3.2+dfsg-7
--------------------------------------------------------------------------------
Finished at 2022-12-05T08:02:34Z
Build needed 00:00:23, 2800k disk space