sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org
+==============================================================================+
| hmmer2 2.3.2+dfsg-8 (i386) Sat, 03 Jun 2023 11:37:42 +0000 |
+==============================================================================+
Package: hmmer2
Version: 2.3.2+dfsg-8
Source Version: 2.3.2+dfsg-8
Distribution: unstable
Machine Architecture: arm64
Host Architecture: i386
Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any
Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.emsIhqn5LV...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/hmmer2-Bws8wu/resolver-AKBEWy' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://mirror.einval.org/debian unstable InRelease [195 kB]
Get:2 http://mirror.einval.org/debian unstable/main Sources [10.0 MB]
Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9299 kB]
Get:4 http://mirror.einval.org/debian unstable/main i386 Packages [9324 kB]
Fetched 28.9 MB in 8s (3826 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
libssl3
1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 1800 kB of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 http://mirror.einval.org/debian unstable/main arm64 libssl3 arm64 3.0.9-1 [1800 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 1800 kB in 0s (42.1 MB/s)
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(Reading database ... 10810 files and directories currently installed.)
Preparing to unpack .../libssl3_3.0.9-1_arm64.deb ...
Unpacking libssl3:arm64 (3.0.9-1) over (3.0.8-1) ...
Setting up libssl3:arm64 (3.0.9-1) ...
Processing triggers for libc-bin (2.36-9) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'hmmer2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/hmmer2.git
Please use:
git clone https://salsa.debian.org/med-team/hmmer2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 354 kB of source archives.
Get:1 http://mirror.einval.org/debian unstable/main hmmer2 2.3.2+dfsg-8 (dsc) [2268 B]
Get:2 http://mirror.einval.org/debian unstable/main hmmer2 2.3.2+dfsg-8 (tar) [332 kB]
Get:3 http://mirror.einval.org/debian unstable/main hmmer2 2.3.2+dfsg-8 (diff) [20.0 kB]
Fetched 354 kB in 0s (6435 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/hmmer2-Bws8wu/hmmer2-2.3.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/hmmer2-Bws8wu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386
Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [778 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [820 B]
Fetched 2207 B in 0s (128 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils-i686-linux-gnu
bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config
crossbuild-essential-i386 debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu
g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu
gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8:i386
libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386
libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386
libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386
libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot
libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386
libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386
libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386
libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl
libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libperl4-corelibs-perl
libpipeline1 libpkgconf3 libquadmath0:i386 libquadmath0-i386-cross
libsquid-dev:i386 libsquid1:i386 libssl3:i386 libstdc++-12-dev:i386
libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross
libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386
libubsan1-i386-cross libuchardet0 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386
linux-libc-dev-i386-cross m4 man-db pkg-config:i386 pkgconf:i386 pkgconf-bin
po-debconf rename sensible-utils ucf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-i686-linux-gnu
gcc-12-doc gcc-12-multilib-i686-linux-gnu manpages-dev flex bison
gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386
libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386
biosquid:i386 libstdc++-12-doc:i386 libtool-doc gfortran
| fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386
libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl
| libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binutils-i686-linux-gnu
bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config
crossbuild-essential-i386 debhelper dh-autoreconf dh-exec
dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu
g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu
gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8:i386
libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386
libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386
libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386
libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot
libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386
libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386
libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386
libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl
libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libperl4-corelibs-perl
libpipeline1 libpkgconf3 libquadmath0:i386 libquadmath0-i386-cross
libsquid-dev:i386 libsquid1:i386 libssl3:i386 libstdc++-12-dev:i386
libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross
libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386
libubsan1-i386-cross libuchardet0 libxml-libxml-perl
libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386
linux-libc-dev-i386-cross m4 man-db pkg-config:i386 pkgconf:i386 pkgconf-bin
po-debconf rename sbuild-build-depends-main-dummy:i386 sensible-utils ucf
0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded.
Need to get 89.3 MB of archives.
After this operation, 361 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B]
Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB]
Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB]
Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB]
Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB]
Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB]
Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB]
Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB]
Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB]
Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB]
Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB]
Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB]
Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB]
Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB]
Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB]
Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu-base arm64 12.2.0-14cross1 [37.7 kB]
Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-12-i686-linux-gnu arm64 12.2.0-14cross1 [8762 kB]
Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:12.2.0-3 [3968 B]
Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB]
Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.40-2 [2362 kB]
Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB]
Get:25 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.36-8cross1 [1340 kB]
Get:26 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 12.2.0-14cross1 [59.6 kB]
Get:27 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 12.2.0-14cross1 [118 kB]
Get:28 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 12.2.0-14cross1 [27.1 kB]
Get:29 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 12.2.0-14cross1 [7472 B]
Get:30 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 12.2.0-14cross1 [2080 kB]
Get:31 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 12.2.0-14cross1 [618 kB]
Get:32 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 12.2.0-14cross1 [870 kB]
Get:33 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 12.2.0-14cross1 [227 kB]
Get:34 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-i386-cross all 12.2.0-14cross1 [2428 kB]
Get:35 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu arm64 12.2.0-14cross1 [17.4 MB]
Get:36 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:12.2.0-3 [1464 B]
Get:37 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.1.4-1cross1 [1839 kB]
Get:38 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.36-8cross1 [1715 kB]
Get:39 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-i386-cross all 12.2.0-14cross1 [2084 kB]
Get:40 http://mirror.einval.org/debian unstable/main arm64 g++-12-i686-linux-gnu arm64 12.2.0-14cross1 [9598 kB]
Get:41 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:12.2.0-3 [1172 B]
Get:42 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB]
Get:43 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB]
Get:44 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB]
Get:45 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB]
Get:46 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:47 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB]
Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB]
Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB]
Get:51 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB]
Get:52 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB]
Get:53 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB]
Get:54 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB]
Get:55 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB]
Get:56 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB]
Get:57 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.9 [6704 B]
Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB]
Get:59 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB]
Get:60 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:61 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:62 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B]
Get:63 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:64 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:65 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB]
Get:66 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB]
Get:67 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB]
Get:68 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:69 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:70 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB]
Get:71 http://mirror.einval.org/debian unstable/main arm64 dh-exec arm64 0.27 [27.6 kB]
Get:72 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB]
Get:73 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB]
Get:74 http://mirror.einval.org/debian unstable/main i386 gcc-12-base i386 12.2.0-14 [37.5 kB]
Get:75 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 12.2.0-14 [59.5 kB]
Get:76 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.36-9 [2626 kB]
Get:77 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 12.2.0-14 [2079 kB]
Get:78 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 12.2.0-14 [7692 B]
Get:79 http://mirror.einval.org/debian unstable/main i386 linux-libc-dev i386 6.1.27-1 [1776 kB]
Get:80 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.33-2 [95.6 kB]
Get:81 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.33-2 [126 kB]
Get:82 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2 [20.1 kB]
Get:83 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-2 [35.1 kB]
Get:84 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-2 [82.4 kB]
Get:85 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2 [9284 B]
Get:86 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.0.9-1 [2019 kB]
Get:87 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-2 [359 kB]
Get:88 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-2 [144 kB]
Get:89 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB]
Get:90 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-2 [42.2 kB]
Get:91 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB]
Get:92 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB]
Get:93 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.36-9 [1718 kB]
Get:94 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 12.2.0-14 [121 kB]
Get:95 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 12.2.0-14 [27.6 kB]
Get:96 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 12.2.0-14 [661 kB]
Get:97 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 12.2.0-14 [870 kB]
Get:98 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 12.2.0-14 [226 kB]
Get:99 http://mirror.einval.org/debian unstable/main i386 libgcc-12-dev i386 12.2.0-14 [2432 kB]
Get:100 http://mirror.einval.org/debian unstable/main arm64 libperl4-corelibs-perl all 0.004-3 [38.5 kB]
Get:101 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB]
Get:102 http://mirror.einval.org/debian unstable/main i386 libsquid1 i386 1.9g+cvs20050121-12 [81.8 kB]
Get:103 http://mirror.einval.org/debian unstable/main i386 libsquid-dev i386 1.9g+cvs20050121-12 [152 kB]
Get:104 http://mirror.einval.org/debian unstable/main i386 libstdc++-12-dev i386 12.2.0-14 [2101 kB]
Get:105 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB]
Get:106 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-1 [25.9 kB]
Get:107 http://mirror.einval.org/debian unstable/main i386 pkg-config i386 1.8.1-1 [13.7 kB]
Get:108 http://mirror.einval.org/debian unstable/main arm64 rename all 2.01-1 [21.0 kB]
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Setting up autoconf (2.71-3) ...
Setting up sensible-utils (0.0.17+nmu1) ...
Setting up libuchardet0:arm64 (0.0.7-1) ...
Setting up libc6-i386-cross (2.36-8cross1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libfile-homedir-perl (1.006-2) ...
Setting up libquadmath0-i386-cross (12.2.0-14cross1) ...
Setting up libelf1:arm64 (0.188-2.1) ...
Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ...
Setting up liblocale-gettext-perl (1.07-5) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-12) ...
Setting up cpp-12-i686-linux-gnu (12.2.0-14cross1) ...
Setting up libtool (2.4.7-5) ...
Setting up libatomic1-i386-cross (12.2.0-14cross1) ...
Setting up libgomp1-i386-cross (12.2.0-14cross1) ...
Setting up libc6-dev-i386-cross (2.36-8cross1) ...
Setting up pkgconf:i386 (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libgcc-s1-i386-cross (12.2.0-14cross1) ...
Setting up dh-autoreconf (20) ...
Setting up libitm1-i386-cross (12.2.0-14cross1) ...
Setting up pkg-config:i386 (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up cpp-i686-linux-gnu (4:12.2.0-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml-sax-perl (1.02+dfsg-3) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libasan8-i386-cross (12.2.0-14cross1) ...
Setting up libstdc++6-i386-cross (12.2.0-14cross1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up debhelper (13.11.4) ...
Setting up dh-exec (0.27) ...
Setting up libubsan1-i386-cross (12.2.0-14cross1) ...
Setting up libxml-simple-perl (2.25-2) ...
Setting up libgcc-12-dev-i386-cross (12.2.0-14cross1) ...
Setting up libconfig-auto-perl (0.44-2) ...
Setting up libstdc++-12-dev-i386-cross (12.2.0-14cross1) ...
Setting up libdebian-dpkgcross-perl (2.6.20) ...
Setting up gcc-12-i686-linux-gnu (12.2.0-14cross1) ...
Setting up g++-12-i686-linux-gnu (12.2.0-14cross1) ...
Setting up gcc-i686-linux-gnu (4:12.2.0-3) ...
Setting up dpkg-cross (2.6.20) ...
Setting up g++-i686-linux-gnu (4:12.2.0-3) ...
Setting up crossbuild-essential-i386 (12.9) ...
Setting up libgcc-s1:i386 (12.2.0-14) ...
Setting up libc6:i386 (2.36-9) ...
Setting up libsquid1:i386 (1.9g+cvs20050121-12) ...
Setting up libasan8:i386 (12.2.0-14) ...
Setting up libstdc++6:i386 (12.2.0-14) ...
Setting up libitm1:i386 (12.2.0-14) ...
Setting up libkeyutils1:i386 (1.6.3-2) ...
Setting up libssl3:i386 (3.0.9-1) ...
Setting up libcrypt1:i386 (1:4.4.33-2) ...
Setting up libcom-err2:i386 (1.47.0-2) ...
Setting up libgomp1:i386 (12.2.0-14) ...
Setting up libsquid-dev:i386 (1.9g+cvs20050121-12) ...
Setting up libkrb5support0:i386 (1.20.1-2) ...
Setting up libquadmath0:i386 (12.2.0-14) ...
Setting up libatomic1:i386 (12.2.0-14) ...
Setting up libk5crypto3:i386 (1.20.1-2) ...
Setting up libubsan1:i386 (12.2.0-14) ...
Setting up libcrypt-dev:i386 (1:4.4.33-2) ...
Setting up libkrb5-3:i386 (1.20.1-2) ...
Setting up libgcc-12-dev:i386 (12.2.0-14) ...
Setting up libgssapi-krb5-2:i386 (1.20.1-2) ...
Setting up libtirpc3:i386 (1.3.3+ds-1) ...
Setting up libtirpc-dev:i386 (1.3.3+ds-1) ...
Setting up libnsl2:i386 (1.3.0-2) ...
Setting up libnsl-dev:i386 (1.3.0-2) ...
Setting up libc6-dev:i386 (2.36-9) ...
Setting up libstdc++-12-dev:i386 (12.2.0-14) ...
Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (i386 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64)
Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.22 g++-12_12.2.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-i386-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-i386-cross_12.2.0-14cross1 linux-libc-dev_6.1.27-1
Package versions: adduser_3.134 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 binutils-aarch64-linux-gnu_2.40-2 binutils-common_2.40-2 binutils-i686-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-12_12.2.0-14 cpp-12-i686-linux-gnu_12.2.0-14cross1 cpp-i686-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-i386_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-12_12.2.0-14 g++-12-i686-linux-gnu_12.2.0-14cross1 g++-i686-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-12-i686-linux-gnu_12.2.0-14cross1 gcc-12-i686-linux-gnu-base_12.2.0-14cross1 gcc-i686-linux-gnu_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14 libasan8-i386-cross_12.2.0-14cross1 libatomic1_12.2.0-14 libatomic1-i386-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2 libblkid1_2.38.1-5+b1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-9 libc-dev-bin_2.36-9 libc6_2.36-9 libc6-dev_2.36-9 libc6-dev-i386-cross_2.36-8cross1 libc6-i386-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_12.2.0-14 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.22 libelf1_0.188-2.1 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev_12.2.0-14 libgcc-12-dev-i386-cross_12.2.0-14cross1 libgcc-s1_12.2.0-14 libgcc-s1-i386-cross_12.2.0-14cross1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14 libgomp1-i386-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libhwasan0_12.2.0-14 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.25-1 libitm1_12.2.0-14 libitm1-i386-cross_12.2.0-14cross1 libjansson4_2.14-2 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5+b1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libperl4-corelibs-perl_0.004-3 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libquadmath0_12.2.0-14 libquadmath0-i386-cross_12.2.0-14cross1 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b6 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.4-2.1 libsmartcols1_2.38.1-5+b1 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libssl3_3.0.9-1 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-i386-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-i386-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsystemd0_252.6-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-14 libubsan1_12.2.0-14 libubsan1-i386-cross_12.2.0-14cross1 libuchardet0_0.0.7-1 libudev1_252.6-1 libunistring2_1.0-2 libuuid1_2.38.1-5+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.27-1 linux-libc-dev-i386-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 ncurses-base_6.4-4 ncurses-bin_6.4-4 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 rename_2.01-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: hmmer2
Binary: hmmer2, hmmer2-doc, libhmmer2-dev
Architecture: any all
Version: 2.3.2+dfsg-8
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Laszlo Kajan <lkajan@debian.org>
Homepage: http://hmmer.janelia.org/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/hmmer2
Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config
Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename
Package-List:
hmmer2 deb science optional arch=any
hmmer2-doc deb doc optional arch=all
libhmmer2-dev deb libdevel optional arch=any
Checksums-Sha1:
7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
6d6d658fa934eb53c22780e16c7899171587dbcc 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz
Checksums-Sha256:
f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
9cfce31a7ad72d780abfd68ddef533c87ae4388dc9e9e7e9680630f25791ad0d 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz
Files:
4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz
a223d42d33db0c92ee26caccbc9a706b 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz
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gpgv: Signature made Sun Dec 11 16:03:58 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hmmer2_2.3.2+dfsg-8.dsc: no acceptable signature found
dpkg-source: info: extracting hmmer2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying version2-manpage
dpkg-source: info: applying userguidepdf
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying use_debian_packaged_biosquid.patch
dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch
dpkg-source: info: applying add-runstatedir-option.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.i386
DEB_BUILD_OPTIONS=nocheck
HOME=/var/lib/sbuild
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=helmut
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package hmmer2
dpkg-buildpackage: info: source version 2.3.2+dfsg-8
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -e configure_not_used ] ; then mv configure_not_used configure; fi
rm -f configure.ac
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
debian/rules override_dh_autoreconf
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp -a debian/missing-sources/configure.ac .
mv configure configure_not_used
dh_autoreconf
configure.ac:111: warning: underquoted definition of CHECK_GNU_MAKE
configure.ac:111: run info Automake 'Extending aclocal'
configure.ac:111: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal
configure.ac:153: warning: The macro `AC_TRY_COMPILE' is obsolete.
configure.ac:153: You should run autoupdate.
./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from...
configure.ac:153: the top level
configure.ac:479: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:479: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
configure.ac:281: ACX_PTHREAD is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:479: the top level
configure.ac:479: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:479: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:281: ACX_PTHREAD is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from...
configure.ac:479: the top level
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm
./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --enable-threads --enable-lfs
configure: loading site script /etc/dpkg-cross/cross-config.i386
configure: configuring HMMER for your system.
configure: This is a full source distribution - using full config
checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether i686-linux-gnu-gcc accepts -g... yes
checking for i686-linux-gnu-gcc option to enable C11 features... none needed
checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib
checking for ar... /usr/bin/ar
checking build system type... aarch64-unknown-linux-gnu
checking host system type... i686-pc-linux-gnu
checking whether your make is GNU make... yes, it is.
configure: configured for optional LFS, large file support
configure: enabled POSIX multithreading support
checking for pthread_setconcurrency... yes
checking for pthread_attr_setscope... yes
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... i686-linux-gnu-gcc
checking for ntohs... yes
checking for ntohl... yes
checking for htons... yes
checking for htonl... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating testsuite/Makefile
config.status: creating Makefile
config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting
config.status: creating src/config.h
# avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together)
sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \
-e '/^#define PACKAGE_NAME /a #endif' \
-e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \
-e '/^#define PACKAGE_VERSION /a #endif' \
-e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \
-e '/^#define _LARGEFILE_SOURCE /a #endif' \
-e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \
-e '/^#define _LARGEFILE64_SOURCE /a #endif' \
-e '/^#define VERSION /i #ifndef VERSION' \
-e '/^#define VERSION /a #endif' \
src/config.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
hmmalign.c:19:10: fatal error: squidconf.h: No such file or directory
19 | #include "squidconf.h"
| ^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:89: hmmalign.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
alphabet.c:17:10: fatal error: squidconf.h: No such file or directory
17 | #include "squidconf.h"
| ^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:89: alphabet.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/testsuite'
i686-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c
Package libsquid was not found in the pkg-config search path.
Perhaps you should add the directory containing `libsquid.pc'
to the PKG_CONFIG_PATH environment variable
Package 'libsquid', required by 'virtual:world', not found
In file included from alignalign_test.c:27:
../src/structs.h:24:10: fatal error: squid.h: No such file or directory
24 | #include "squid.h"
| ^~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:43: alignalign_test.o] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/testsuite'
make[1]: *** [Makefile:84: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 returned exit code 2
make: *** [debian/rules:15: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2023-06-03T11:39:15Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 3644
Build-Time: 11
Distribution: unstable
Fail-Stage: build
Foreign Architectures: i386
Host Architecture: i386
Install-Time: 47
Job: hmmer2_2.3.2+dfsg-8
Machine Architecture: arm64
Package: hmmer2
Package-Time: 93
Source-Version: 2.3.2+dfsg-8
Space: 3644
Status: attempted
Version: 2.3.2+dfsg-8
--------------------------------------------------------------------------------
Finished at 2023-06-03T11:39:15Z
Build needed 00:01:33, 3644k disk space