sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | hmmer2 2.3.2+dfsg-13 (riscv64) Sat, 14 Nov 2026 19:56:54 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-13 Source Version: 2.3.2+dfsg-13 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.FObr5IPi4_... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 14 Nov 2026 19:56:58 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.2 MB] Get:3 http://localhost:3142/debian unstable/main riscv64 Packages [10.5 MB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages [10.9 MB] Fetched 33.7 MB in 3s (12.2 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 14 Nov 2026 19:57:03 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hmmer2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hmmer2.git Please use: git clone https://salsa.debian.org/med-team/hmmer2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 355 kB of source archives. Get:1 http://localhost:3142/debian unstable/main hmmer2 2.3.2+dfsg-13 (dsc) [2236 B] Get:2 http://localhost:3142/debian unstable/main hmmer2 2.3.2+dfsg-13 (tar) [332 kB] Get:3 http://localhost:3142/debian unstable/main hmmer2 2.3.2+dfsg-13 (diff) [21.1 kB] Fetched 355 kB in 1s (320 kB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 14 Nov 2026 19:57:04 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), dh-exec, libperl4-corelibs-perl, libsquid-dev, pkgconf, rename, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 14), dh-exec, libperl4-corelibs-perl, libsquid-dev, pkgconf, rename, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-riscv64:amd64, apt-utils:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-7qrcHD/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Sources [785 B] Get:5 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Packages [830 B] Fetched 2224 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libperl4-corelibs-perl libpipeline1 libpkgconf7 libsquid-dev:riscv64 libsquid1t64:riscv64 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-riscv64-cross m4 man-db pkgconf:riscv64 pkgconf-bin po-debconf rename sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 manpages-dev:riscv64 biosquid:riscv64 libstdc++-16-doc:riscv64 libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests libidn2-0:riscv64 libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils cpp-16-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz file g++-16-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-16-base:riscv64 gcc-16-cross-base gcc-16-riscv64-linux-gnu gcc-16-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libc-gconv-modules-extra:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgcc-16-dev:riscv64 libgcc-16-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgomp1:riscv64 libgomp1-riscv64-cross libitm1:riscv64 libitm1-riscv64-cross liblsan0:riscv64 liblsan0-riscv64-cross libmagic-mgc libmagic1t64 libperl4-corelibs-perl libpipeline1 libpkgconf7 libsquid-dev:riscv64 libsquid1t64:riscv64 libstdc++-16-dev:riscv64 libstdc++-16-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-riscv64-cross m4 man-db pkgconf:riscv64 pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy:riscv64 sensible-utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After this operation, 850 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.25.0-2 [1200 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-3 [892 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.47.50.20261021-1 [1588 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [17.5 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:16.2.0-1 [4524 B] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.43-3cross8 [1229 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 16.2.0-3cross1 [74.3 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 16.2.0-3cross1 [137 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 16.2.0-3cross1 [25.6 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 16.2.0-3cross1 [8604 B] Get:27 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 16.2.0-3cross1 [2982 kB] Get:28 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 16.2.0-3cross1 [1341 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 16.2.0-3cross1 [2695 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 16.2.0-3cross1 [750 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 16.2.0-3cross1 [1190 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-riscv64-cross all 16.2.0-3cross1 [5847 kB] Get:33 http://localhost:3142/debian unstable/main amd64 gcc-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [34.3 MB] Get:34 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:16.2.0-1 [1444 B] Get:35 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 7.3.4-1 [12.0 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.43-3cross8 [3495 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-riscv64-cross all 16.2.0-3cross1 [6916 kB] Get:38 http://localhost:3142/debian unstable/main amd64 g++-16-riscv64-linux-gnu amd64 16.2.0-3cross1 [18.6 MB] Get:39 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:16.2.0-1 [1200 B] Get:40 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:41 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:43 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:46 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:47 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1+b1 [684 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:52 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:53 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:54 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dh-exec amd64 0.31 [26.1 kB] Get:56 http://localhost:3142/debian unstable/main riscv64 gcc-16-base riscv64 16.2.0-4 [39.3 kB] Get:57 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 16.2.0-4 [74.2 kB] Get:58 http://localhost:3142/debian unstable/main riscv64 libc-gconv-modules-extra riscv64 2.43-7 [1104 kB] Get:59 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.43-7 [1465 kB] Get:60 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 16.2.0-4 [2994 kB] Get:61 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 16.2.0-4 [8508 B] Get:62 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.43-7 [3497 kB] Get:63 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 16.2.0-4 [137 kB] Get:64 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 16.2.0-4 [25.5 kB] Get:65 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 16.2.0-4 [1342 kB] Get:66 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 16.2.0-4 [2706 kB] Get:67 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 16.2.0-4 [774 kB] Get:68 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 16.2.0-4 [1191 kB] Get:69 http://localhost:3142/debian unstable/main riscv64 libgcc-16-dev riscv64 16.2.0-4 [5793 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libperl4-corelibs-perl all 0.005-1 [39.0 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:72 http://localhost:3142/debian unstable/main riscv64 libsquid1t64 riscv64 1.9g+cvs20050121-16+b1 [76.9 kB] Get:73 http://localhost:3142/debian unstable/main riscv64 libsquid-dev riscv64 1.9g+cvs20050121-16+b1 [266 kB] Get:74 http://localhost:3142/debian unstable/main riscv64 libstdc++-16-dev riscv64 16.2.0-4 [10.6 MB] Get:75 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:76 http://localhost:3142/debian unstable/main riscv64 pkgconf riscv64 2.5.1-4 [33.6 kB] Get:77 http://localhost:3142/debian unstable/main amd64 rename all 2.02-2 [19.9 kB] Preconfiguring packages ... Fetched 143 MB in 1s (126 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12109 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2+b2_amd64.deb ... 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Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1+b1) ... Setting up libdebhelper-perl (14.5) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up libperl4-corelibs-perl (0.005-1) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up binutils-riscv64-linux-gnu (2.47.50.20261021-1) ... Setting up m4 (1.4.21-1) ... Setting up rename (2.02-2) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up gcc-16-base:riscv64 (16.2.0-4) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up linux-libc-dev-riscv64-cross (7.3.4-1) ... Setting up libc6-riscv64-cross (2.43-3cross8) ... Setting up libgomp1-riscv64-cross (16.2.0-3cross1) ... Setting up libatomic1-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up automake (1:1.19-3) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libitm1-riscv64-cross (16.2.0-3cross1) ... Setting up pkgconf:riscv64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libgcc-s1-riscv64-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.25.0-2) ... Setting up libc6-dev-riscv64-cross (2.43-3cross8) ... Setting up libasan8-riscv64-cross (16.2.0-3cross1) ... Setting up cpp-riscv64-linux-gnu (4:16.2.0-1) ... Setting up libstdc++6-riscv64-cross (16.2.0-3cross1) ... Setting up libubsan1-riscv64-cross (16.2.0-3cross1) ... Setting up po-debconf (1.0.22) ... Setting up liblsan0-riscv64-cross (16.2.0-3cross1) ... Setting up libtsan2-riscv64-cross (16.2.0-3cross1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up dh-exec (0.31) ... Setting up libstdc++-16-dev-riscv64-cross (16.2.0-3cross1) ... Setting up gcc-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up gcc-riscv64-linux-gnu (4:16.2.0-1) ... Setting up g++-16-riscv64-linux-gnu (16.2.0-3cross1) ... Setting up g++-riscv64-linux-gnu (4:16.2.0-1) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libgcc-s1:riscv64 (16.2.0-4) ... Setting up libc6:riscv64 (2.43-7) ... Setting up libasan8:riscv64 (16.2.0-4) ... Setting up libc6-dev:riscv64 (2.43-7) ... Setting up libtsan2:riscv64 (16.2.0-4) ... Setting up libsquid1t64:riscv64 (1.9g+cvs20050121-16+b1) ... Setting up libstdc++6:riscv64 (16.2.0-4) ... Setting up liblsan0:riscv64 (16.2.0-4) ... Setting up libitm1:riscv64 (16.2.0-4) ... Setting up libgomp1:riscv64 (16.2.0-4) ... Setting up libsquid-dev:riscv64 (1.9g+cvs20050121-16+b1) ... Setting up libatomic1:riscv64 (16.2.0-4) ... Setting up libubsan1:riscv64 (16.2.0-4) ... Setting up libgcc-16-dev:riscv64 (16.2.0-4) ... Setting up libstdc++-16-dev:riscv64 (16.2.0-4) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 14 Nov 2026 19:57:18 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 14 Nov 2026 19:57:19 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.12 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-riscv64-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-riscv64-cross_16.2.0-3cross1 linux-libc-dev_7.3.4-1 Package versions: apt_3.3.7 apt-utils_3.3.7 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4+b1 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-riscv64-linux-gnu_2.47.50.20261021-1 binutils-x86-64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.12-0.3 cpp_4:16.2.0-1 cpp-16_16.2.0-4 cpp-16-riscv64-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-4 cpp-riscv64-linux-gnu_4:16.2.0-1 cpp-x86-64-linux-gnu_4:16.2.0-1 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-exec_0.31 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.12 dpkg-dev_1.23.12 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.2.0-1 g++-16_16.2.0-4 g++-16-riscv64-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-4 g++-riscv64-linux-gnu_4:16.2.0-1 g++-x86-64-linux-gnu_4:16.2.0-1 gcc_4:16.2.0-1 gcc-16_16.2.0-4 gcc-16-base_16.2.0-4 gcc-16-cross-base_16.2.0-3cross1 gcc-16-riscv64-linux-gnu_16.2.0-3cross1 gcc-16-riscv64-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-4 gcc-riscv64-linux-gnu_4:16.2.0-1 gcc-x86-64-linux-gnu_4:16.2.0-1 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.25.0-2 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.7 libarchive-zip-perl_1.68-1 libasan8_16.2.0-4 libasan8-riscv64-cross_16.2.0-3cross1 libatomic1_16.2.0-4 libatomic1-riscv64-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1+b1 libbinutils_2.47.50.20261021-1 libblkid1_2.42.4-1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libc6-dev-riscv64-cross_2.43-3cross8 libc6-riscv64-cross_2.43-3cross8 libcap-ng0_0.9.6-1+b1 libcap2_1:2.78-1+b2 libcc1-0_16.2.0-4 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-12 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.12 libelf1t64_0.196-1 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-4 libgcc-16-dev-riscv64-cross_16.2.0-3cross1 libgcc-s1_16.2.0-4 libgcc-s1-riscv64-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-4 libgomp1-riscv64-cross_16.2.0-3cross1 libgprofng0_2.47.50.20261021-1 libhogweed6t64_3.10.2-1+b1 libhwasan0_16.2.0-4 libisl23_0.28-1 libitm1_16.2.0-4 libitm1-riscv64-cross_16.2.0-3cross1 libjansson4_2.15.1-1 liblsan0_16.2.0-4 liblsan0-riscv64-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.49-1 libperl4-corelibs-perl_0.005-1 libperl5.44_5.44.0-3 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libquadmath0_16.2.0-4 libseccomp2_2.6.1-1+b2 libselinux1_3.11-2.1+b1 libsframe3_2.47.50.20261021-1 libsmartcols1_2.42.4-1 libsquid-dev_1.9g+cvs20050121-16+b1 libsquid1t64_1.9g+cvs20050121-16+b1 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-4 libstdc++-16-dev-riscv64-cross_16.2.0-3cross1 libstdc++6_16.2.0-4 libstdc++6-riscv64-cross_16.2.0-3cross1 libsystemd0_262.2-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-4 libtsan2-riscv64-cross_16.2.0-3cross1 libubsan1_16.2.0-4 libubsan1-riscv64-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262.2-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1+b1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.3.4-1 linux-libc-dev-riscv64-cross_7.3.4-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.20.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 perl_5.44.0-3 perl-base_5.44.0-3 perl-modules-5.44_5.44.0-3 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 rename_2.02-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-2 tar_1.35+dfsg-7 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Sat, 14 Nov 2026 19:57:19 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer2 Binary: hmmer2, hmmer2-doc, libhmmer2-dev Architecture: any all Version: 2.3.2+dfsg-13 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://hmmer.janelia.org/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config Build-Depends: debhelper-compat (= 14), dh-exec, libperl4-corelibs-perl, libsquid-dev, pkgconf, rename Package-List: hmmer2 deb science optional arch=any hmmer2-doc deb doc optional arch=all libhmmer2-dev deb libdevel optional arch=any Checksums-Sha1: 7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz ce89a6d65be717182df9abc0a6e259aa74964979 21084 hmmer2_2.3.2+dfsg-13.debian.tar.xz Checksums-Sha256: f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz d9080de3046114893bdba60881499f89345612b71a20c71579cef205333585c9 21084 hmmer2_2.3.2+dfsg-13.debian.tar.xz Files: 4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz c3fc41578ba0349b83727e2f9796c46b 21084 hmmer2_2.3.2+dfsg-13.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmr13N4RHHRpbGxlQGRl 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/usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting hmmer2 in /build/reproducible-path/hmmer2-2.3.2+dfsg dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch dpkg-source: info: applying add-runstatedir-option.patch dpkg-source: info: applying fixup-implicit-function-declaration.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.934xIiaQg9/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_clean if [ -e configure_not_used ] ; then mv configure_not_used configure; fi rm -f configure.ac src/config.h make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' cp -a debian/missing-sources/configure.ac . mv configure configure_not_used dh_autoreconf autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force configure.ac:119: warning: underquoted definition of CHECK_GNU_MAKE configure.ac:119: run info Automake 'Extending aclocal' configure.ac:119: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal autoreconf: configure.ac: tracing autoreconf: configure.ac: subdirectory squid not present autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force configure.ac:161: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:161: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:161: the top level configure.ac:487: warning: The macro 'AC_LANG_C' is obsolete. configure.ac:487: You should run autoupdate. ./lib/autoconf/c.m4:73: AC_LANG_C is expanded from... configure.ac:289: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:1584: AC_ARG_ENABLE is expanded from... configure.ac:487: the top level configure.ac:487: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:487: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:289: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:1584: AC_ARG_ENABLE is expanded from... configure.ac:487: the top level autoreconf: configure.ac: src/config.h.in was not generated by autoheader autoreconf: force update of src/config.h.in with --replace-handwritten autoreconf: configure.ac: not using Automake autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_auto_configure -- --enable-threads --enable-lfs PTHREAD_CFLAGS="-D_XOPEN_SOURCE=500" # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=riscv64-linux-gnu --enable-threads --enable-lfs PTHREAD_CFLAGS=-D_XOPEN_SOURCE=500 configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for riscv64-linux-gnu-gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C23 features... none needed checking for riscv64-linux-gnu-ranlib... riscv64-linux-gnu-ranlib checking for ar... /usr/bin/ar checking for riscv64-linux-gnu-pkg-config... /usr/bin/riscv64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking build system type... x86_64-pc-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... yes checking for pthread_attr_setscope... yes checking for pthread_join in LIBS= with CFLAGS=-D_XOPEN_SOURCE=500... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... riscv64-linux-gnu-gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_auto_build -a make -j1 make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' make[2]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/src' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmalign.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c alphabet.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c core_algorithms.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c debug.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c display.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c emit.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c emulation.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c fast_algorithms.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c histogram.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmio.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c mathsupport.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c masks.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c misc.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c modelmakers.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c plan7.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c plan9.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c postprob.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c prior.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c pvm.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c threads.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c tophits.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c trace.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmbuild.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmcalibrate.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmconvert.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmemit.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmfetch.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmindex.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmpfam.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -D_XOPEN_SOURCE=500 `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -c hmmsearch.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D_XOPEN_SOURCE=500 -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm make[2]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/src' make[2]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o riscv64-linux-gnu-ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/src' make[2]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/testsuite' riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c alignalign_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o alignalign_test -L../src alignalign_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c evd_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o evd_test -L../src evd_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c masks_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o masks_test -L../src masks_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c parsingviterbi_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o parsingviterbi_test -L../src parsingviterbi_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c tophits_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o tophits_test -L../src tophits_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c trace_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o trace_test -L../src trace_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c viterbi_exercise.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o viterbi_exercise -L../src viterbi_exercise.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `/usr/bin/riscv64-linux-gnu-pkg-config --cflags libsquid` -I../src -c weeviterbi_test.c riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/hmmer2-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=500 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o weeviterbi_test -L../src weeviterbi_test.o -lhmmer `/usr/bin/riscv64-linux-gnu-pkg-config --libs libsquid` -lm make[2]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/testsuite' make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_auto_install -- prefix=/build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/hmmer2-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/build/reproducible-path/hmmer2-2.3.2\+dfsg/debian/tmp make[2]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' mkdir -p /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/bin mkdir -p /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1 for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch ; do\ cp src/$file /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/bin/;\ done for file in hmmer hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch; do\ cp documentation/man/$file.man /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1/$file.1;\ done make[2]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' chmod -R u\+rwX /build/reproducible-path/hmmer2-2.3.2\+dfsg/debian/tmp # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1: rename 's/^hmm/hmm2/;' /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/bin/* cd /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/bin; rename 's/^hmm/hmm2/;' * cd /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * mv /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1/hmm2er.1 /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1/hmmer2.1 # lkajan: resolve man page hypen issue: sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/tmp/share/man/man1/* make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' sed -e "s/@DEB_HOST_MULTIARCH@/riscv64-linux-gnu/" \ -e "s/@VERSION@/2.3.2/" debian/pkgconfig/libhmmer2.pc.in > debian/pkgconfig/libhmmer2.pc dh_install rm -f debian/pkgconfig/libhmmer2.pc make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_installchangelogs -k NOTES make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' cd testsuite && make clean && cd .. make[2]: Entering directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/testsuite' rm -f *.o *~ Makefile.bak core alignalign_test evd_test masks_test parsingviterbi_test tophits_test trace_test viterbi_exercise weeviterbi_test TAGS gmon.out make[2]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg/testsuite' dh_installexamples mkdir -p /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples; cp -a testsuite/* /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples/; mkdir /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; cp -a tutorial/* /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; sed -i "s#hmm#hmm2#g" /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples/exercises.sqc sed -i "s#../tut#./tut#g" /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples/exercises.sqc find /build/reproducible-path/hmmer2-2.3.2+dfsg/debian/hmmer2/usr/share/doc/hmmer2/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer2-2.3.2+dfsg^.^g" make[1]: Leaving directory '/build/reproducible-path/hmmer2-2.3.2+dfsg' dh_installman -a dh_perl -a dh_link -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_fixperms -a dh_strip_nondeterminism -a dh_compress -a dh_installdeb -a dh_computeautosubstvars -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package hmmer2: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libhmmer2-dev: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libhmmer2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'hmmer2' in '../hmmer2_2.3.2+dfsg-13_riscv64.deb'. dpkg-deb: building package 'hmmer2-dbgsym' in '../hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb'. dpkg-deb: building package 'libhmmer2-dev' in '../libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb'. dpkg-genbuildinfo --build=any -O../hmmer2_2.3.2+dfsg-13_riscv64.buildinfo dpkg-genchanges --build=any -O../hmmer2_2.3.2+dfsg-13_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-11-14T19:57:39Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Sat, 14 Nov 2026 19:57:39 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/hmmer2-2.3.2+dfsg/ -------------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/hmmer2-2.3.2+dfsg/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 14 Nov 2026 19:57:39 +0000 | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-13_riscv64.changes: ------------------------------------- Format: 1.8 Date: Thu, 12 Nov 2026 16:33:47 +0100 Source: hmmer2 Binary: hmmer2 hmmer2-dbgsym libhmmer2-dev Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 2.3.2+dfsg-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hmmer2 - profile hidden Markov models for protein sequence analysis libhmmer2-dev - profile hidden Markov models for protein sequence analysis (devel Closes: 1135016 Changes: hmmer2 (2.3.2+dfsg-13) unstable; urgency=medium . * d/watch: - Version=5 - Fix by pointing to Github * Do not recommend xpdf-reader Closes: #1135016 * Standards-Version: 4.7.4 (routine-update) * Reflow Uploaders field (cme) * Remove Priority field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * Reformat the Last-Update date as ISO YYYY-MM-DD. * Remove unused dh-exec usage from debian/libhmmer2-dev.install. * Replace FSF postal address with a reference to https://www.gnu.org/licenses/. * Set upstream metadata fields: Bug-Database. Checksums-Sha1: 61becfa174ce53888592615c43f065b165920f04 1634332 hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb 115268ddccdf8a86c03185462e2eb5a5212f0bb0 5385 hmmer2_2.3.2+dfsg-13_riscv64.buildinfo a395331caa635ba6b600796c54a5ffaaac7667d1 312000 hmmer2_2.3.2+dfsg-13_riscv64.deb 1a205f62006a759fafb4d4b0af0c9a6e127981d4 208660 libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb Checksums-Sha256: 1a61055196c79f69f826735a842718302fbdd6711810263b38bcda7e80a27f30 1634332 hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb 1c1562ec9127cc70143b0f8be28d945be805729ac44ec2adfca0ebefd0ac6ced 5385 hmmer2_2.3.2+dfsg-13_riscv64.buildinfo 2faba4ebee2bfd764facd3ddb37651ab0c32e41108e5d5f10f87292f7d1df91a 312000 hmmer2_2.3.2+dfsg-13_riscv64.deb bdf66ffef345437f4e476ad8b6fd39808b74ff052e0a1dff30df2a41965ef6bc 208660 libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb Files: 5cf612fb2c3238aef867c0ce26aaf657 1634332 debug optional hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb b9df6cb41ee42ffdc446a3a814407361 5385 science optional hmmer2_2.3.2+dfsg-13_riscv64.buildinfo 43abc6262ba4aef7f16ec4eaa35dfdb8 312000 science optional hmmer2_2.3.2+dfsg-13_riscv64.deb 1f47710a920c803319792b8b8d0cddd9 208660 libdevel optional libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 14 Nov 2026 19:57:39 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer2 Binary: hmmer2 hmmer2-dbgsym libhmmer2-dev Architecture: riscv64 Version: 2.3.2+dfsg-13 Checksums-Md5: 5cf612fb2c3238aef867c0ce26aaf657 1634332 hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb 43abc6262ba4aef7f16ec4eaa35dfdb8 312000 hmmer2_2.3.2+dfsg-13_riscv64.deb 1f47710a920c803319792b8b8d0cddd9 208660 libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb Checksums-Sha1: 61becfa174ce53888592615c43f065b165920f04 1634332 hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb a395331caa635ba6b600796c54a5ffaaac7667d1 312000 hmmer2_2.3.2+dfsg-13_riscv64.deb 1a205f62006a759fafb4d4b0af0c9a6e127981d4 208660 libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb Checksums-Sha256: 1a61055196c79f69f826735a842718302fbdd6711810263b38bcda7e80a27f30 1634332 hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb 2faba4ebee2bfd764facd3ddb37651ab0c32e41108e5d5f10f87292f7d1df91a 312000 hmmer2_2.3.2+dfsg-13_riscv64.deb bdf66ffef345437f4e476ad8b6fd39808b74ff052e0a1dff30df2a41965ef6bc 208660 libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 14 Nov 2026 19:57:38 +0000 Build-Path: /build/reproducible-path/hmmer2-2.3.2+dfsg Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4+b1), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-x86-64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), coreutils (= 9.12-0.3), cpp (= 4:16.2.0-1), cpp-16 (= 16.2.0-4), cpp-16-x86-64-linux-gnu (= 16.2.0-4), cpp-x86-64-linux-gnu (= 4:16.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-exec (= 0.31), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.12), dpkg-dev (= 1.23.12), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.2.0-1), g++-16 (= 16.2.0-4), g++-16-x86-64-linux-gnu (= 16.2.0-4), g++-x86-64-linux-gnu (= 4:16.2.0-1), gcc (= 4:16.2.0-1), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-x86-64-linux-gnu (= 16.2.0-4), gcc-x86-64-linux-gnu (= 4:16.2.0-1), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.25.0-2), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libatomic1 (= 16.2.0-4), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1+b1), libbinutils (= 2.47.50.20261021-1), libblkid1 (= 2.42.4-1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1+b1), libcap2 (= 1:2.78-1+b2), libcc1-0 (= 16.2.0-4), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-12), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.12), libelf1t64 (= 0.196-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-4), libgprofng0 (= 2.47.50.20261021-1), libhwasan0 (= 16.2.0-4), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), liblsan0 (= 16.2.0-4), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.49-1), libperl4-corelibs-perl (= 0.005-1), libperl5.44 (= 5.44.0-3), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libquadmath0 (= 16.2.0-4), libseccomp2 (= 2.6.1-1+b2), libselinux1 (= 3.11-2.1+b1), libsframe3 (= 2.47.50.20261021-1), libsmartcols1 (= 2.42.4-1), libsquid-dev (= 1.9g+cvs20050121-16+b1), libsquid1t64 (= 1.9g+cvs20050121-16+b1), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsystemd0 (= 262.2-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.3.4-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), perl (= 5.44.0-3), perl-base (= 5.44.0-3), perl-modules-5.44 (= 5.44.0-3), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), rename (= 2.02-2), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-2), tar (= 1.35+dfsg-7), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1794497627" +------------------------------------------------------------------------------+ | Package contents Sat, 14 Nov 2026 19:57:39 +0000 | +------------------------------------------------------------------------------+ hmmer2-dbgsym_2.3.2+dfsg-13_riscv64.deb --------------------------------------- new Debian package, version 2.0. size 1634332 bytes: control archive=960 bytes. 709 bytes, 12 lines control 954 bytes, 9 lines md5sums Package: hmmer2-dbgsym Source: hmmer2 Version: 2.3.2+dfsg-13 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 3046 Depends: hmmer2 (= 2.3.2+dfsg-13) Section: debug Priority: optional Description: debug symbols for hmmer2 Build-Ids: 6458f4fcc4086f1815f65fb2fba4f250a4ffdee3 9bae321e9f0e4c5a58c1b9f812b16ba37829a654 9fcb9b88afe88b922f55e875cf1ffa1097d43368 a95116892ac64ab7208771001035a70b47163086 accceda01b9dc850c025a91c002d29412246592b bf24bcc279a4837e4e794823eaf78c8d338e6c16 c2c604194f99cb4f6601e478d47a23d1ff3c69eb ea089c1875b33a7cc7897d1ab000901c282198e9 f3d5a0086b4776dced647ee950d3e499e6c4b8d8 drwxr-xr-x root/root 0 2026-11-12 15:33 ./ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/64/ -rw-r--r-- root/root 335040 2026-11-12 15:33 ./usr/lib/debug/.build-id/64/58f4fcc4086f1815f65fb2fba4f250a4ffdee3.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 353392 2026-11-12 15:33 ./usr/lib/debug/.build-id/9b/ae321e9f0e4c5a58c1b9f812b16ba37829a654.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/9f/ -rw-r--r-- root/root 350840 2026-11-12 15:33 ./usr/lib/debug/.build-id/9f/cb9b88afe88b922f55e875cf1ffa1097d43368.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/a9/ -rw-r--r-- root/root 332064 2026-11-12 15:33 ./usr/lib/debug/.build-id/a9/5116892ac64ab7208771001035a70b47163086.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/ac/ -rw-r--r-- root/root 340008 2026-11-12 15:33 ./usr/lib/debug/.build-id/ac/cceda01b9dc850c025a91c002d29412246592b.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/bf/ -rw-r--r-- root/root 335024 2026-11-12 15:33 ./usr/lib/debug/.build-id/bf/24bcc279a4837e4e794823eaf78c8d338e6c16.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 338008 2026-11-12 15:33 ./usr/lib/debug/.build-id/c2/c604194f99cb4f6601e478d47a23d1ff3c69eb.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/ea/ -rw-r--r-- root/root 361800 2026-11-12 15:33 ./usr/lib/debug/.build-id/ea/089c1875b33a7cc7897d1ab000901c282198e9.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/debug/.build-id/f3/ -rw-r--r-- root/root 348120 2026-11-12 15:33 ./usr/lib/debug/.build-id/f3/d5a0086b4776dced647ee950d3e499e6c4b8d8.debug drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-11-12 15:33 ./usr/share/doc/hmmer2-dbgsym -> hmmer2 hmmer2_2.3.2+dfsg-13_riscv64.deb -------------------------------- new Debian package, version 2.0. size 312000 bytes: control archive=2600 bytes. 964 bytes, 21 lines control 5091 bytes, 69 lines md5sums Package: hmmer2 Version: 2.3.2+dfsg-13 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 1848 Depends: libc6 (>= 2.38), libsquid1t64 (>= 1.9g+cvs20050121) Recommends: biosquid Suggests: hmmer2-doc (>= 2.3.2+dfsg-13) Section: science Priority: optional Homepage: https://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. Commands: hmm2align, hmm2build, hmm2calibrate, hmm2convert, hmm2emit, hmm2fetch, hmm2index, hmm2pfam, hmm2search drwxr-xr-x root/root 0 2026-11-12 15:33 ./ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/bin/ -rwxr-xr-x root/root 138280 2026-11-12 15:33 ./usr/bin/hmm2align -rwxr-xr-x root/root 148576 2026-11-12 15:33 ./usr/bin/hmm2build -rwxr-xr-x root/root 138184 2026-11-12 15:33 ./usr/bin/hmm2calibrate -rwxr-xr-x root/root 133960 2026-11-12 15:33 ./usr/bin/hmm2convert -rwxr-xr-x root/root 133880 2026-11-12 15:33 ./usr/bin/hmm2emit -rwxr-xr-x root/root 133592 2026-11-12 15:33 ./usr/bin/hmm2fetch -rwxr-xr-x root/root 133504 2026-11-12 15:33 ./usr/bin/hmm2index -rwxr-xr-x root/root 143176 2026-11-12 15:33 ./usr/bin/hmm2pfam -rwxr-xr-x root/root 142976 2026-11-12 15:33 ./usr/bin/hmm2search drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/hmmer2/ lrwxrwxrwx root/root 0 2026-11-12 15:33 ./usr/lib/hmmer2/hmmindex -> ../../bin/hmm2index lrwxrwxrwx root/root 0 2026-11-12 15:33 ./usr/lib/hmmer2/hmmpfam -> ../../bin/hmm2pfam drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/hmmer2/ -rw-r--r-- root/root 2293 2026-11-12 15:33 ./usr/share/doc/hmmer2/00README lrwxrwxrwx root/root 0 2026-11-12 15:33 ./usr/share/doc/hmmer2/NOTES.gz -> changelog.gz -rw-r--r-- root/root 615 2026-11-12 15:33 ./usr/share/doc/hmmer2/README.Debian -rw-r--r-- root/root 1177 2026-11-12 15:33 ./usr/share/doc/hmmer2/changelog.Debian.gz -rw-r--r-- root/root 2161 2026-11-12 15:33 ./usr/share/doc/hmmer2/changelog.gz -rw-r--r-- root/root 1346 2026-11-12 15:33 ./usr/share/doc/hmmer2/copyright drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/hmmer2/examples/ -rw-r--r-- root/root 1931 2026-11-12 15:33 ./usr/share/doc/hmmer2/examples/Makefile -rw-r--r-- root/root 1757 2026-11-12 15:33 ./usr/share/doc/hmmer2/examples/Makefile.in -rw-r--r-- root/root 392 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.fa -rw-r--r-- root/root 126 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nfa -rw-r--r-- root/root 168 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nslx -rw-r--r-- root/root 2122 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pam -rw-r--r-- root/root 2816 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pri -rw-r--r-- root/root 297 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.slx -rw-r--r-- root/root 3271 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.sto -rw-r--r-- root/root 2684 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/README -rw-r--r-- root/root 7729 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/alignalign_test.c -rw-r--r-- root/root 9913 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/evd_test.c -rw-r--r-- root/root 592 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/exercises-pvm.sqc -rw-r--r-- root/root 548 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/exercises-threaded.sqc -rw-r--r-- root/root 10522 2026-11-12 15:33 ./usr/share/doc/hmmer2/examples/exercises.sqc -rw-r--r-- root/root 1611 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fitting_test.c -rw-r--r-- root/root 16930 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3-bin -rw-r--r-- root/root 16930 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3-bin-swap -rw-r--r-- root/root 31906 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.hmm -rw-r--r-- root/root 20514 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.seed -rw-r--r-- root/root 3926 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/masks_test.c -rw-r--r-- root/root 5491 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/parsingviterbi_test.c -rwxr-xr-x root/root 17674 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/sqc -rwxr-xr-x root/root 876 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/test1-conversion.pl -rw-r--r-- root/root 27349 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/titin.fa -rw-r--r-- root/root 4900 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tophits_test.c -rw-r--r-- root/root 4781 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/trace_test.c -rw-r--r-- root/root 4313 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/trace_test.hmm -rw-r--r-- root/root 514 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/trace_test.seq -rw-r--r-- root/root 112 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/trace_test.slx drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/hmmer2/examples/tutorial/ -rw-r--r-- root/root 1489 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/Artemia.fa -rw-r--r-- root/root 418 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/amino.null -rw-r--r-- root/root 3014 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/amino.pri -rw-r--r-- root/root 33550 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/fn3.sto -rw-r--r-- root/root 25284 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/globins50.msf -rw-r--r-- root/root 101046 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/globins630.fa -rw-r--r-- root/root 195 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/nucleic.null -rw-r--r-- root/root 745 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/nucleic.pri -rw-r--r-- root/root 112640 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/pkinase.sto -rw-r--r-- root/root 29502 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/rrm.hmm -rw-r--r-- root/root 18294 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/tutorial/rrm.sto -rw-r--r-- root/root 5363 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/viterbi_exercise.c -rw-r--r-- root/root 5202 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.c -rw-r--r-- root/root 27073 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.hmm -rw-r--r-- root/root 535 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.seq drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/man/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/man/man1/ -rw-r--r-- root/root 1748 2026-11-12 15:33 ./usr/share/man/man1/hmm2align.1.gz -rw-r--r-- root/root 4765 2026-11-12 15:33 ./usr/share/man/man1/hmm2build.1.gz -rw-r--r-- root/root 1703 2026-11-12 15:33 ./usr/share/man/man1/hmm2calibrate.1.gz -rw-r--r-- root/root 1113 2026-11-12 15:33 ./usr/share/man/man1/hmm2convert.1.gz -rw-r--r-- root/root 1364 2026-11-12 15:33 ./usr/share/man/man1/hmm2emit.1.gz -rw-r--r-- root/root 945 2026-11-12 15:33 ./usr/share/man/man1/hmm2fetch.1.gz -rw-r--r-- root/root 752 2026-11-12 15:33 ./usr/share/man/man1/hmm2index.1.gz -rw-r--r-- root/root 3395 2026-11-12 15:33 ./usr/share/man/man1/hmm2pfam.1.gz -rw-r--r-- root/root 3046 2026-11-12 15:33 ./usr/share/man/man1/hmm2search.1.gz -rw-r--r-- root/root 1691 2026-11-12 15:33 ./usr/share/man/man1/hmmer2.1.gz libhmmer2-dev_2.3.2+dfsg-13_riscv64.deb --------------------------------------- new Debian package, version 2.0. size 208660 bytes: control archive=1108 bytes. 879 bytes, 22 lines control 696 bytes, 10 lines md5sums Package: libhmmer2-dev Source: hmmer2 Version: 2.3.2+dfsg-13 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 1712 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (devel) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains header files and static library that can be used to link against libhmmer. drwxr-xr-x root/root 0 2026-11-12 15:33 ./ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/include/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/include/hmmer2/ -rw-r--r-- root/root 4524 2026-11-12 15:33 ./usr/include/hmmer2/config.h -rw-r--r-- root/root 16177 2026-11-12 15:33 ./usr/include/hmmer2/funcs.h -rw-r--r-- root/root 1201 2003-10-04 19:01 ./usr/include/hmmer2/globals.h -rw-r--r-- root/root 1733 2003-10-04 19:01 ./usr/include/hmmer2/postprob.h -rw-r--r-- root/root 24821 2003-10-04 19:01 ./usr/include/hmmer2/structs.h drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/riscv64-linux-gnu/ -rw-r--r-- root/root 1680848 2026-11-12 15:33 ./usr/lib/riscv64-linux-gnu/libhmmer.a drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/lib/riscv64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 263 2026-11-12 15:33 ./usr/lib/riscv64-linux-gnu/pkgconfig/libhmmer2.pc drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-11-12 15:33 ./usr/share/doc/libhmmer2-dev/ lrwxrwxrwx root/root 0 2026-11-12 15:33 ./usr/share/doc/libhmmer2-dev/NOTES.gz -> changelog.gz -rw-r--r-- root/root 1178 2026-11-12 15:33 ./usr/share/doc/libhmmer2-dev/changelog.Debian.gz -rw-r--r-- root/root 2161 2026-11-12 15:33 ./usr/share/doc/libhmmer2-dev/changelog.gz -rw-r--r-- root/root 1346 2026-11-12 15:33 ./usr/share/doc/libhmmer2-dev/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-7qrcHD/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Sources [1367 B] Get:5 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ Packages [1450 B] Fetched 3432 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat distro-info-data gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl4-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdistro-info-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-someutils-xs-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-someutil-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-1 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:riscv64 shared-mime-info t1utils ucf unzip 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 25.3 MB of archives. After this operation, 95.6 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-7qrcHD/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [836 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.6 [10.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1.1 [73.2 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.7-1.1 [990 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b2 [9420 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4.1 [325 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b3 [19.6 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.14+dfsg-2+b1 [201 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.71.0-1 [83.7 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libcurl4-gnutls amd64 8.23.0-2 [464 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.1.1-1 [138 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.30-1 [69.6 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.2.3-1 [270 kB] Get:40 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.2.3-1 [661 kB] Get:41 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.69-2 [37.3 kB] Get:42 http://localhost:3142/debian unstable/main amd64 distro-info-data all 2026.10.12-1 [6372 B] Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b2 [60.7 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.9-8 [130 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.8.1-1 [147 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-4 [23.1 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.54.1-2 [1020 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.9-8 [664 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43+b2 [70.7 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b6 [10.7 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.010-2+b1 [15.7 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b8 [22.7 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.65-1+b1 [45.7 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2+b3 [122 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.40-1 [115 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.86-1+b1 [101 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 5.02-1 [230 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b8 [37.0 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.51-1+b1 [24.1 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-someutil-perl amd64 1.12-1+b1 [25.0 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.992-1 [49.3 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.80-1+b1 [154 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.46-1 [32.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3+b2 [32.0 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b7 [98.1 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.87-1+b2 [24.3 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libdistro-info-perl all 1.20 [5488 B] Get:98 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b6 [30.2 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:103 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b4 [31.1 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:113 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.05-1 [20.3 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.12-2 [19.2 kB] Get:119 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:120 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:121 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.96-2+b1 [336 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.099-1 [229 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:124 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.17-1 [11.2 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.03-1 [15.8 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.83-1 [186 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:132 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblist-someutils-xs-perl amd64 0.59-1+b2 [36.7 kB] Get:135 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:136 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16-2 [40.4 kB] Get:137 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b2 [36.5 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:140 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002005-1 [19.5 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:145 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.2-1+b2 [144 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4+b2 [11.3 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b4 [12.5 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.150-1 [56.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b6 [17.9 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b5 [11.5 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b5 [42.0 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 7.002+ds-1 [144 kB] Get:156 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 7.002+ds-1 [141 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:158 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.51-1+b1 [66.7 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1+b2 [27.2 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b6 [24.9 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b6 [8824 B] Get:162 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1+b2 [13.2 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b4 [175 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1+b2 [79.4 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.75-1+b2 [29.1 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.22-1 [117 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-5 [53.6 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-8+b2 [314 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.910.0+ds-1+b2 [48.3 kB] Get:174 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13-2 [72.8 kB] Get:175 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:176 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.5-1 [85.7 kB] Get:177 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:178 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-31 [176 kB] Get:179 http://localhost:3142/debian unstable/main amd64 lintian all 2.143.0 [1038 kB] Preconfiguring packages ... Fetched 25.3 MB in 0s (116 MB/s) Selecting previously unselected package netbase. (Reading database ... 18231 files and directories currently installed.) Preparing to unpack .../000-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1.1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1.1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1.1_amd64.deb ... Unpacking procps (2:4.0.7-1.1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.5-1_amd64.deb ... Unpacking openssl (3.6.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20260816+nmu1_all.deb ... Unpacking ca-certificates (20260816+nmu1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-12+b2_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b2) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../010-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../011-libglib2.0-0t64_2.90.1-2_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.90.1-2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_2.4-5+b3_amd64.deb ... Unpacking shared-mime-info (2.4-5+b3) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../013-libnghttp3-9_1.17.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.17.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../014-libngtcp2-16_1.24.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.24.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../015-libbrotli1_1.2.0-4.1_amd64.deb ... Unpacking libbrotli1:amd64 (1.2.0-4.1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../016-libidn2-0_2.3.8-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-5) ... Selecting previously unselected package libp11-kit0:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.9-8_amd64.deb ... Unpacking gpgconf (2.4.9-8) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../046-libksba8_1.8.1-1_amd64.deb ... Unpacking libksba8:amd64 (1.8.1-1) ... Selecting previously unselected package libnpth0t64:amd64. 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Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../090-libnet-netmask-perl_2.0003-1_all.deb ... Unpacking libnet-netmask-perl (2.0003-1) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../091-libnetaddr-ip-perl_4.079+dfsg-2+b7_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b7) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../092-libdata-validate-ip-perl_0.31-1_all.deb ... Unpacking libdata-validate-ip-perl (0.31-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../093-libdata-validate-uri-perl_0.07-3_all.deb ... Unpacking libdata-validate-uri-perl (0.07-3) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../094-libdevel-size-perl_0.87-1+b2_amd64.deb ... Unpacking libdevel-size-perl (0.87-1+b2) ... Selecting previously unselected package libdistro-info-perl. 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Selecting previously unselected package sbuild-build-depends-lintian-dummy:riscv64. Preparing to unpack .../178-sbuild-build-depends-lintian-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.43+b2) ... Setting up liblz1:amd64 (1.16-2) ... Setting up libberkeleydb-perl:amd64 (0.66-2+b3) ... Setting up plzip (1.13-2) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-12+b2) ... Setting up libnpth0t64:amd64 (1.8-4) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libunicode-utf8-perl (0.75-1+b2) ... Setting up libmouse-perl:amd64 (2.6.2-1+b2) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up libdata-messagepack-perl (1.02-3+b2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.51-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4+b2) ... Setting up distro-info-data (2026.10.12-1) ... Setting up libcpanel-json-xs-perl:amd64 (4.80-1+b1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.87-1+b2) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:amd64 (1.2.0-4.1) ... Setting up libsqlite3-0:amd64 (3.54.1-2) ... Setting up liblwp-mediatypes-perl (6.05-1) ... Setting up libyaml-libyaml-perl (0.910.0+ds-1+b2) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.71.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.12.4-2) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1+b2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libcom-err2:amd64 (1.47.4-1+b3) ... Setting up libparams-someutil-perl (1.12-1+b1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (7.002+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libnet-netmask-perl (2.0003-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libfyaml0:amd64 (0.9.4-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up patchutils (0.4.5-1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b7) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libproc2-1:amd64 (2:4.0.7-1.1) ... Setting up libfile-find-rule-perl (0.35-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b5) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.69-2) ... Setting up libvariable-magic-perl (0.65-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libdata-optlist-perl (0.115-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b6) ... Setting up libfile-libmagic-perl (1.23-2+b4) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2+b4) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3500-1) ... Setting up libsub-name-perl:amd64 (0.28-1+b4) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:amd64 (0.637-1+b5) ... Setting up libpath-tiny-perl (0.150-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2+b2) ... Setting up procps (2:4.0.7-1.1) ... Setting up librole-tiny-perl (2.002005-1) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b8) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libstemmer0d:amd64 (3.1.1-1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libterm-readkey-perl (2.38-2+b6) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.6.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b6) ... Setting up libperlio-gzip-perl (0.20-1+b6) ... Setting up readline-common (8.3-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (7.002+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b2) ... Setting up libldap2:amd64 (2.6.14+dfsg-2+b1) ... Setting up liburi-perl (5.40-1) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libsub-exporter-perl (0.992-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b6) ... Setting up libnet-ssleay-perl:amd64 (1.96-2+b1) ... Setting up libksba8:amd64 (1.8.1-1) ... Setting up libhttp-date-perl (6.08-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libdistro-info-perl (1.20) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1+b2) ... Setting up libexception-class-perl (1.46-1) ... Setting up libdevel-callchecker-perl (0.010-2+b1) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 120 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.51-1+b1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libwww-robotrules-perl (6.03-1) ... Setting up libsyntax-keyword-try-perl (0.31-1+b2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhtml-parser-perl:amd64 (3.86-1+b1) ... Setting up gpgconf (2.4.9-8) ... Setting up libio-socket-ssl-perl (2.099-1) ... Setting up gpg (2.4.9-8) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.12-2) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.30-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b8) ... Setting up libcgi-pm-perl (5.02-1) ... Setting up libxml-sax-perl (1.02+dfsg-5) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-8+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.2.3-1) ... Setting up liblist-someutils-xs-perl:amd64 (0.59-1+b2) ... Setting up appstream (1.2.3-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.17-1) ... Setting up libwww-perl (6.83-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.22-1) ... Setting up lintian (2.143.0) ... Setting up sbuild-build-depends-lintian-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build Sat, 14 Nov 2026 19:57:54 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 14 Nov 2026 19:57:54 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 14 Nov 2026 19:57:55 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 19 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 14 Job: hmmer2_2.3.2+dfsg-13 Lintian: pass Machine Architecture: amd64 Package: hmmer2 Package-Time: 45 Source-Version: 2.3.2+dfsg-13 Space: n/a Status: successful Version: 2.3.2+dfsg-13 -------------------------------------------------------------------------------- Finished at 2026-11-14T19:57:39Z Build needed 00:00:45, no disk space