sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | hmmer2 2.3.2+dfsg-8 (mipsel) Tue, 17 Jan 2023 07:33:58 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-9a2f5857-52ab-426e-a6f5-6543758457ac' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-UCrl3S/resolver-HbL3gR' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-01-17-0215.12-F-2023-01-17-0215.12.pdiff [12.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-01-17-0215.12-F-2023-01-17-0215.12.pdiff [15.4 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-01-17-0215.12-F-2023-01-17-0215.12.pdiff [12.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-01-17-0215.12-F-2023-01-17-0215.12.pdiff [15.4 kB] Get:6 http://localhost:3142/debian sid/main mipsel Packages [9000 kB] Fetched 9315 kB in 2s (5046 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hmmer2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hmmer2.git Please use: git clone https://salsa.debian.org/med-team/hmmer2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 354 kB of source archives. Get:1 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-8 (dsc) [2268 B] Get:2 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-8 (tar) [332 kB] Get:3 http://localhost:3142/debian sid/main hmmer2 2.3.2+dfsg-8 (diff) [20.0 kB] Fetched 354 kB in 0s (7280 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hmmer2-UCrl3S/hmmer2-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-UCrl3S' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [443 B] Get:5 copy:/<>/apt_archive ./ Packages [532 B] Fetched 1932 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu72 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:mipsel libnsl2:mipsel libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev:mipsel libsquid1:mipsel libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db pkg-config:mipsel pkgconf:mipsel pkgconf-bin po-debconf rename sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mipsel-linux-gnu gcc-12-doc gcc-12-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel manpages-dev:mipsel krb5-doc:mipsel krb5-user:mipsel biosquid:mipsel libstdc++-11-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl krb5-locales:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu72 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:mipsel libnsl2:mipsel libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev:mipsel libsquid1:mipsel libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db pkg-config:mipsel pkgconf:mipsel pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy:mipsel sensible-utils ucf 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 74.1 MB of archives. After this operation, 300 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-2 [305 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-2 [104 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-2 [42.4 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-1 [1386 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-2 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mipsel-linux-gnu amd64 2.39.90.20230104-1cross1 [2798 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu-base amd64 12.2.0-14cross1 [37.7 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-mipsel-linux-gnu amd64 12.2.0-14cross1 [8085 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mipsel-linux-gnu amd64 4:12.2.0-4 [3284 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-14cross1 [33.3 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-mipsel-cross all 2.36-8cross1 [950 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-mipsel-cross all 12.2.0-14cross1 [46.1 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-mipsel-cross all 12.2.0-14cross1 [105 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-mipsel-cross all 12.2.0-14cross1 [6476 B] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mipsel-cross all 12.2.0-14cross1 [267 kB] Get:30 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu amd64 12.2.0-14cross1 [15.9 MB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-mipsel-linux-gnu amd64 4:12.2.0-4 [1452 B] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-mipsel-cross all 12.2.0-14cross1 [498 kB] Get:33 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mipsel-cross all 6.1.4-1cross1 [1812 kB] Get:34 http://localhost:3142/debian sid/main amd64 libc6-dev-mipsel-cross all 2.36-8cross1 [1417 kB] Get:35 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mipsel-cross all 12.2.0-14cross1 [2034 kB] Get:36 http://localhost:3142/debian sid/main amd64 g++-12-mipsel-linux-gnu amd64 12.2.0-14cross1 [9011 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-mipsel-linux-gnu amd64 4:12.2.0-4 [1176 B] Get:38 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:39 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:40 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:41 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:52 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:54 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:56 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:57 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:58 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:59 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:61 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:62 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:63 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:64 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:65 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:66 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:67 http://localhost:3142/debian sid/main amd64 dh-exec amd64 0.27 [27.8 kB] Get:68 http://localhost:3142/debian sid/main mipsel gcc-11-base mipsel 11.3.0-11 [38.3 kB] Get:69 http://localhost:3142/debian sid/main mipsel gcc-12-base mipsel 12.2.0-14 [37.5 kB] Get:70 http://localhost:3142/debian sid/main mipsel libgcc-s1 mipsel 12.2.0-14 [45.7 kB] Get:71 http://localhost:3142/debian sid/main mipsel libc6 mipsel 2.36-8 [2264 kB] Get:72 http://localhost:3142/debian sid/main mipsel libatomic1 mipsel 12.2.0-14 [6700 B] Get:73 http://localhost:3142/debian sid/main mipsel linux-libc-dev mipsel 6.1.4-1 [1697 kB] Get:74 http://localhost:3142/debian sid/main mipsel libcrypt1 mipsel 1:4.4.33-2 [113 kB] Get:75 http://localhost:3142/debian sid/main mipsel libcrypt-dev mipsel 1:4.4.33-2 [144 kB] Get:76 http://localhost:3142/debian sid/main mipsel libcom-err2 mipsel 1.46.6~rc1-1.1 [15.8 kB] Get:77 http://localhost:3142/debian sid/main mipsel libkrb5support0 mipsel 1.20.1-1 [31.3 kB] Get:78 http://localhost:3142/debian sid/main mipsel libk5crypto3 mipsel 1.20.1-1 [83.9 kB] Get:79 http://localhost:3142/debian sid/main mipsel libkeyutils1 mipsel 1.6.3-2 [8288 B] Get:80 http://localhost:3142/debian sid/main mipsel libssl3 mipsel 3.0.7-1 [1517 kB] Get:81 http://localhost:3142/debian sid/main mipsel libkrb5-3 mipsel 1.20.1-1 [303 kB] Get:82 http://localhost:3142/debian sid/main mipsel libgssapi-krb5-2 mipsel 1.20.1-1 [117 kB] Get:83 http://localhost:3142/debian sid/main mipsel libtirpc3 mipsel 1.3.3+ds-1 [74.3 kB] Get:84 http://localhost:3142/debian sid/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:85 http://localhost:3142/debian sid/main mipsel libtirpc-dev mipsel 1.3.3+ds-1 [197 kB] Get:86 http://localhost:3142/debian sid/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:87 http://localhost:3142/debian sid/main mipsel libc6-dev mipsel 2.36-8 [1421 kB] Get:88 http://localhost:3142/debian sid/main mipsel libgomp1 mipsel 12.2.0-14 [107 kB] Get:89 http://localhost:3142/debian sid/main mipsel libgcc-11-dev mipsel 11.3.0-11 [254 kB] Get:90 http://localhost:3142/debian sid/main amd64 libperl4-corelibs-perl all 0.004-3 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.0-12 [35.8 kB] Get:92 http://localhost:3142/debian sid/main mipsel libsquid1 mipsel 1.9g+cvs20050121-12 [68.0 kB] Get:93 http://localhost:3142/debian sid/main mipsel libsquid-dev mipsel 1.9g+cvs20050121-12 [149 kB] Get:94 http://localhost:3142/debian sid/main mipsel libstdc++6 mipsel 12.2.0-14 [541 kB] Get:95 http://localhost:3142/debian sid/main mipsel libstdc++-11-dev mipsel 11.3.0-11 [1969 kB] Get:96 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.0-12 [29.2 kB] Get:97 http://localhost:3142/debian sid/main mipsel pkgconf mipsel 1.8.0-12 [25.7 kB] Get:98 http://localhost:3142/debian sid/main mipsel pkg-config mipsel 1.8.0-12 [13.5 kB] Get:99 http://localhost:3142/debian sid/main amd64 rename all 2.00-1 [20.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.1 MB in 1s (55.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15192 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-2_amd64.deb ... Unpacking libmagic-mgc (1:5.44-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.44-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-2_amd64.deb ... Unpacking file (1:5.44-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-10_amd64.deb ... Unpacking gettext-base (0.21-10) ... 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Setting up gcc-12-cross-base-mipsen (12.2.0-14cross1) ... Setting up linux-libc-dev:mipsel (6.1.4-1) ... Setting up libc6-mipsel-cross (2.36-8cross1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-2) ... Setting up rename (2.00-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libatomic1-mipsel-cross (12.2.0-14cross1) ... Setting up file (1:5.44-2) ... Setting up libyaml-perl (1.30-2) ... Setting up gcc-12-mipsel-linux-gnu-base:amd64 (12.2.0-14cross1) ... Setting up gcc-12-base:mipsel (12.2.0-14) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:amd64 (1.8.0-12) ... Setting up binutils-mipsel-linux-gnu (2.39.90.20230104-1cross1) ... Setting up libgomp1-mipsel-cross (12.2.0-14cross1) ... Setting up autopoint (0.21-10) ... Setting up pkgconf-bin (1.8.0-12) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-mipsel-cross (6.1.4-1cross1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up cpp-12-mipsel-linux-gnu (12.2.0-14cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-10) ... Setting up libc6-dev-mipsel-cross (2.36-8cross1) ... Setting up libtool (2.4.7-5) ... Setting up libgcc-s1-mipsel-cross (12.2.0-14cross1) ... Setting up libgcc-12-dev-mipsel-cross (12.2.0-14cross1) ... Setting up pkgconf:mipsel (1.8.0-12) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-mipsel-linux-gnu (4:12.2.0-4) ... Setting up pkg-config:mipsel (1.8.0-12) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up gcc-12-mipsel-linux-gnu (12.2.0-14cross1) ... Setting up libstdc++6-mipsel-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libstdc++-12-dev-mipsel-cross (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.4) ... Setting up dh-exec (0.27) ... Setting up g++-12-mipsel-linux-gnu (12.2.0-14cross1) ... Setting up g++-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libgcc-s1:mipsel (12.2.0-14) ... Setting up libc6:mipsel (2.36-8) ... Setting up libsquid1:mipsel (1.9g+cvs20050121-12) ... Setting up libstdc++6:mipsel (12.2.0-14) ... Setting up libkeyutils1:mipsel (1.6.3-2) ... Setting up libcrypt1:mipsel (1:4.4.33-2) ... Setting up libcom-err2:mipsel (1.46.6~rc1-1.1) ... Setting up libgomp1:mipsel (12.2.0-14) ... Setting up libsquid-dev:mipsel (1.9g+cvs20050121-12) ... Setting up libkrb5support0:mipsel (1.20.1-1) ... Setting up libatomic1:mipsel (12.2.0-14) ... Setting up libk5crypto3:mipsel (1.20.1-1) ... Setting up libgcc-11-dev:mipsel (11.3.0-11) ... Setting up libcrypt-dev:mipsel (1:4.4.33-2) ... Setting up libssl3:mipsel (3.0.7-1) ... Setting up libkrb5-3:mipsel (1.20.1-1) ... Setting up libgssapi-krb5-2:mipsel (1.20.1-1) ... Setting up libtirpc3:mipsel (1.3.3+ds-1) ... Setting up libtirpc-dev:mipsel (1.3.3+ds-1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.36-8) ... Setting up libstdc++-11-dev:mipsel (11.3.0-11) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.18 g++-11_11.3.0-11 g++-12_12.2.0-14 gcc-11_11.3.0-11 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mipsel-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-mipsel-cross_12.2.0-14cross1 linux-libc-dev_6.1.4-1 Package versions: adduser_3.130 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2 binutils-common_2.40-2 binutils-mipsel-linux-gnu_2.39.90.20230104-1cross1 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-11 cpp-12_12.2.0-14 cpp-12-mipsel-linux-gnu_12.2.0-14cross1 cpp-mipsel-linux-gnu_4:12.2.0-4 cross-config_2.6.20 crossbuild-essential-mipsel_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-3 dpkg_1.21.18 dpkg-cross_2.6.20 dpkg-dev_1.21.18 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1.1 fakeroot_1.30.1-1.1 file_1:5.44-2 findutils_4.9.0-4 g++_4:12.2.0-3 g++-11_11.3.0-11 g++-12_12.2.0-14 g++-12-mipsel-linux-gnu_12.2.0-14cross1 g++-mipsel-linux-gnu_4:12.2.0-4 gcc_4:12.2.0-3 gcc-11_11.3.0-11 gcc-11-base_11.3.0-11 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gcc-12-cross-base-mipsen_12.2.0-14cross1 gcc-12-mipsel-linux-gnu_12.2.0-14cross1 gcc-12-mipsel-linux-gnu-base_12.2.0-14cross1 gcc-9-base_9.5.0-2+b3 gcc-mipsel-linux-gnu_4:12.2.0-4 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan6_11.3.0-11 libasan8_12.2.0-14 libatomic1_12.2.0-14 libatomic1-mipsel-cross_12.2.0-14cross1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbinutils_2.40-2 libblkid1_2.38.1-4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-8 libc-dev-bin_2.36-8 libc6_2.36-8 libc6-dev_2.36-8 libc6-dev-mipsel-cross_2.36-8cross1 libc6-mipsel-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.66-3 libcc1-0_12.2.0-14 libcom-err2_1.46.6~rc1-1.1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.266 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.18 libelf1_0.188-2.1 libext2fs2_1.46.6~rc1-1.1 libfakeroot_1.30.1-1.1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-11 libgcc-12-dev_12.2.0-14 libgcc-12-dev-mipsel-cross_12.2.0-14cross1 libgcc-s1_12.2.0-14 libgcc-s1-mipsel-cross_12.2.0-14cross1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14 libgomp1-mipsel-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-14 libjansson4_2.14-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.0 libmagic-mgc_1:5.44-2 libmagic1_1:5.44-2 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl4-corelibs-perl_0.004-3 libperl5.34_5.34.0-5 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-12 libquadmath0_12.2.0-14 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b4 libsemanage-common_3.4-1 libsemanage2_3.4-1+b4 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.46.6~rc1-1.1 libssl3_3.0.7-1 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mipsel-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-mipsel-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsystemd0_252.4-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-11 libtsan2_12.2.0-14 libubsan1_12.2.0-14 libuchardet0_0.0.7-1 libudev1_252.4-1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg2-3 linux-libc-dev_6.1.4-1 linux-libc-dev-mipsel-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1.1 m4_1.4.19-2 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 ncurses-base_6.4-1 ncurses-bin_6.4-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-7 pkg-config_1.8.0-12 pkgconf_1.8.0-12 pkgconf-bin_1.8.0-12 po-debconf_1.0.21+nmu1 rename_2.00-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-2 tar_1.34+dfsg-1.1 tzdata_2022g-2 ucf_3.0043 usrmerge_35 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.1-0.0 zlib1g_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hmmer2 Binary: hmmer2, hmmer2-doc, libhmmer2-dev Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Laszlo Kajan Homepage: http://hmmer.janelia.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename Package-List: hmmer2 deb science optional arch=any hmmer2-doc deb doc optional arch=all libhmmer2-dev deb libdevel optional arch=any Checksums-Sha1: 7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 6d6d658fa934eb53c22780e16c7899171587dbcc 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 9cfce31a7ad72d780abfd68ddef533c87ae4388dc9e9e7e9680630f25791ad0d 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Files: 4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz a223d42d33db0c92ee26caccbc9a706b 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOV/24RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVhBAAjOZcCVOpWRuw207+UT5tjOryAIKyVFCr Stiea1KD74v1iYtDqP+NiNOWCBp4McoW8uaVYM27QpMHYcKQ96WGEs7bUdZjMZGx KjPGgRuMKR9uLmQUeCEpJrHxyyrTBf+1PEsN1pm7ojAvVbYofHli24QaQuOCAmy2 uvf67afL9QbZqxJB83hWkQG6wt3JGHCc0VKwJJEFSuEW6qsoJKSR6ynj0ZqczTkV HyTShuAwtKZHRCQF771FCDERSMfdJUqZRTi1pbt7P4iXl1nVW+CfFpPj64Sloagm qpHEtC0HBPRwCCRQsyk3cfSi7YxTctui4rFha2eD4jcY7YLBaxTZeVEyyN0SfIjw wmo6qaUvECu0jV3/WfNe9FofePXMLgaWlwH6Y4Icw79nnZ3THG3AV9igKm+pFpTJ DFdjed9XAdDMiMj5Jfs1iACuPCz//691JiTSFD2b/r0lCTsCkBFJZC/Qs+rN7av7 I5+B72dgT1VD4/lJ3W9gSK+TmKL1GtjcohMs92w9IEavr+4bzsKJOPGbYjk7QJij poC16/gx2kiP/hlb27OwkegH2y749KFbnaafE2dQo6l8TJyuRFxV7W4INNWzghkN hwD7x2UCU8knopgpczGT+7yvzO60q+YQ8FagKcu0t6NWiay6rdKX9yQL7V80CcMg iqsa40SdQps= =g+em -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-gpg-verify.M8No904_/trustedkeys.kbx': General error gpgv: Signature made Sun Dec 11 16:03:58 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hmmer2_2.3.2+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting hmmer2 in /<> dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch dpkg-source: info: applying add-runstatedir-option.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-9a2f5857-52ab-426e-a6f5-6543758457ac SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e configure_not_used ] ; then mv configure_not_used configure; fi rm -f configure.ac make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cp -a debian/missing-sources/configure.ac . mv configure configure_not_used dh_autoreconf configure.ac:111: warning: underquoted definition of CHECK_GNU_MAKE configure.ac:111: run info Automake 'Extending aclocal' configure.ac:111: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:153: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:153: the top level configure.ac:479: warning: The macro `AC_LANG_C' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level configure.ac:479: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --enable-threads --enable-lfs configure: loading site script /etc/dpkg-cross/cross-config.mipsel configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to enable C11 features... none needed checking for mipsel-linux-gnu-ranlib... mipsel-linux-gnu-ranlib checking for ar... /usr/bin/ar checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-unknown-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... yes checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... mipsel-linux-gnu-gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/src' mipsel-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c Package libsquid was not found in the pkg-config search path. Perhaps you should add the directory containing `libsquid.pc' to the PKG_CONFIG_PATH environment variable Package 'libsquid', required by 'virtual:world', not found hmmalign.c:19:10: fatal error: squidconf.h: No such file or directory 19 | #include "squidconf.h" | ^~~~~~~~~~~~~ compilation terminated. make[2]: *** [Makefile:89: hmmalign.o] Error 1 make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' mipsel-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c Package libsquid was not found in the pkg-config search path. Perhaps you should add the directory containing `libsquid.pc' to the PKG_CONFIG_PATH environment variable Package 'libsquid', required by 'virtual:world', not found alphabet.c:17:10: fatal error: squidconf.h: No such file or directory 17 | #include "squidconf.h" | ^~~~~~~~~~~~~ compilation terminated. make[2]: *** [Makefile:89: alphabet.o] Error 1 make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/testsuite' mipsel-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c Package libsquid was not found in the pkg-config search path. Perhaps you should add the directory containing `libsquid.pc' to the PKG_CONFIG_PATH environment variable Package 'libsquid', required by 'virtual:world', not found In file included from alignalign_test.c:27: ../src/structs.h:24:10: fatal error: squid.h: No such file or directory 24 | #include "squid.h" | ^~~~~~~~~ compilation terminated. make[2]: *** [Makefile:43: alignalign_test.o] Error 1 make[2]: Leaving directory '/<>/testsuite' make[1]: *** [Makefile:84: all] Error 2 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 returned exit code 2 make: *** [debian/rules:15: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-01-17T07:34:21Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 3644 Build-Time: 4 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 10 Job: hmmer2_2.3.2+dfsg-8 Machine Architecture: amd64 Package: hmmer2 Package-Time: 23 Source-Version: 2.3.2+dfsg-8 Space: 3644 Status: attempted Version: 2.3.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2023-01-17T07:34:21Z Build needed 00:00:23, 3644k disk space