sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | hmmer 3.2.1+dfsg-2 (arm64) Wed, 25 Sep 2019 03:43:42 +0000 | +==============================================================================+ Package: hmmer Version: 3.2.1+dfsg-2 Source Version: 3.2.1+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2f46c464-52be-435a-a065-53bf926045c5' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer-Cg4Taw/resolver-1GzMkN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-24-0813.11.pdiff [5362 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-24-1416.36.pdiff [10.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-24-2013.54.pdiff [7165 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-25-0212.16.pdiff [3954 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-25-0212.16.pdiff [3954 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-24-0813.11.pdiff [4835 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-24-1416.36.pdiff [8123 B] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-24-2013.54.pdiff [10.5 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-25-0212.16.pdiff [6176 B] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-25-0212.16.pdiff [6176 B] Get:12 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8054 kB] Fetched 8305 kB in 2s (4270 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libacl1 libattr1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 52.2 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libacl1 amd64 2.2.53-5 [30.7 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libattr1 amd64 1:2.4.48-5 [21.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.2 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.53-5_amd64.deb ... Unpacking libacl1:amd64 (2.2.53-5) over (2.2.53-4) ... Setting up libacl1:amd64 (2.2.53-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.4.48-5_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.48-5) over (1:2.4.48-4) ... Setting up libattr1:amd64 (1:2.4.48-5) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hmmer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hmmer.git Please use: git clone https://salsa.debian.org/med-team/hmmer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5986 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main hmmer 3.2.1+dfsg-2 (dsc) [2046 B] Get:2 http://debian.oregonstate.edu/debian unstable/main hmmer 3.2.1+dfsg-2 (tar) [5974 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main hmmer 3.2.1+dfsg-2 (diff) [9440 B] Fetched 5986 kB in 0s (53.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hmmer-Cg4Taw/hmmer-3.2.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer-Cg4Taw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), libdivsufsort-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11~), libdivsufsort-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [499 B] Fetched 1867 B in 0s (90.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libdivsufsort-dev:arm64 libdivsufsort3:arm64 libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libdivsufsort-dev:arm64 libdivsufsort3:arm64 libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 62.9 MB of archives. After this operation, 262 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-8 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190909-1 [2774 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-8cross1 [193 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6536 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-1cross7 [1253 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-8cross1 [34.0 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-8cross1 [76.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-8cross1 [24.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-8cross1 [8640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-8cross1 [347 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-8cross1 [122 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-8cross1 [267 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-8cross1 [416 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-8cross1 [117 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-8cross1 [888 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6896 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.9-2cross7 [1310 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-1cross7 [2273 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-8cross1 [1632 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [7113 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.66-2 [103 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-8 [34.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-2 [2464 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-8 [354 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-8 [8852 B] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.9-2 [1214 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-2 [2287 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libdivsufsort3 arm64 2.0.1-4 [38.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 libdivsufsort-dev arm64 2.0.1-4 [27.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-8 [78.4 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-8 [24.7 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-8 [123 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-8 [274 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-8 [454 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-8 [118 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-8 [878 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-8 [1653 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.9 MB in 1s (71.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13083 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../07-gcc-9-base_9.2.1-8_arm64.deb ... Unpacking gcc-9-base:arm64 (9.2.1-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../10-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../13-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../14-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../20-binutils-aarch64-linux-gnu_2.32.51.20190909-1_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.32.51.20190909-1) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu-base:amd64. Preparing to unpack .../21-gcc-9-aarch64-linux-gnu-base_9.2.1-8cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-8cross1) ... Selecting previously unselected package cpp-9-aarch64-linux-gnu. Preparing to unpack .../22-cpp-9-aarch64-linux-gnu_9.2.1-8cross1_amd64.deb ... Unpacking cpp-9-aarch64-linux-gnu (9.2.1-8cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../23-cpp-aarch64-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../24-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../25-gcc-9-cross-base_9.2.1-8cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-8cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../26-libc6-arm64-cross_2.29-1cross7_all.deb ... Unpacking libc6-arm64-cross (2.29-1cross7) ... Selecting previously unselected package libgcc1-arm64-cross. Preparing to unpack .../27-libgcc1-arm64-cross_1%3a9.2.1-8cross1_all.deb ... Unpacking libgcc1-arm64-cross (1:9.2.1-8cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../28-libgomp1-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libgomp1-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../29-libitm1-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libitm1-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libatomic1-arm64-cross. Preparing to unpack .../30-libatomic1-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libatomic1-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libasan5-arm64-cross. Preparing to unpack .../31-libasan5-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libasan5-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package liblsan0-arm64-cross. Preparing to unpack .../32-liblsan0-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking liblsan0-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libtsan0-arm64-cross. Preparing to unpack .../33-libtsan0-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libtsan0-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libstdc++6-arm64-cross. Preparing to unpack .../34-libstdc++6-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libstdc++6-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libubsan1-arm64-cross. Preparing to unpack .../35-libubsan1-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libubsan1-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package libgcc-9-dev-arm64-cross. Preparing to unpack .../36-libgcc-9-dev-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libgcc-9-dev-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu. Preparing to unpack .../37-gcc-9-aarch64-linux-gnu_9.2.1-8cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu (9.2.1-8cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../38-gcc-aarch64-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../39-linux-libc-dev-arm64-cross_5.2.9-2cross7_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.2.9-2cross7) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../40-libc6-dev-arm64-cross_2.29-1cross7_all.deb ... Unpacking libc6-dev-arm64-cross (2.29-1cross7) ... Selecting previously unselected package libstdc++-9-dev-arm64-cross. Preparing to unpack .../41-libstdc++-9-dev-arm64-cross_9.2.1-8cross1_all.deb ... Unpacking libstdc++-9-dev-arm64-cross (9.2.1-8cross1) ... Selecting previously unselected package g++-9-aarch64-linux-gnu. Preparing to unpack .../42-g++-9-aarch64-linux-gnu_9.2.1-8cross1_amd64.deb ... Unpacking g++-9-aarch64-linux-gnu (9.2.1-8cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../43-g++-aarch64-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../44-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../45-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../46-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../47-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../48-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../49-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../50-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../51-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../52-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../53-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../54-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../55-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../56-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../57-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../58-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../59-crossbuild-essential-arm64_12.8_all.deb ... Unpacking crossbuild-essential-arm64 (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../60-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../61-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../62-libarchive-zip-perl_1.66-2_all.deb ... Unpacking libarchive-zip-perl (1.66-2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../63-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../64-libfile-stripnondeterminism-perl_1.6.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../65-dh-strip-nondeterminism_1.6.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../66-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../67-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../68-libdebhelper-perl_12.6.1_all.deb ... Unpacking libdebhelper-perl (12.6.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../69-libglib2.0-0_2.60.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../70-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../71-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../72-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../73-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../74-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../75-debhelper_12.6.1_all.deb ... Unpacking debhelper (12.6.1) ... Selecting previously unselected package libgcc1:arm64. Preparing to unpack .../76-libgcc1_1%3a9.2.1-8_arm64.deb ... Unpacking libgcc1:arm64 (1:9.2.1-8) ... Selecting previously unselected package libc6:arm64. Preparing to unpack .../77-libc6_2.29-2_arm64.deb ... Unpacking libc6:arm64 (2.29-2) ... Selecting previously unselected package libasan5:arm64. Preparing to unpack .../78-libasan5_9.2.1-8_arm64.deb ... Unpacking libasan5:arm64 (9.2.1-8) ... Selecting previously unselected package libatomic1:arm64. Preparing to unpack .../79-libatomic1_9.2.1-8_arm64.deb ... Unpacking libatomic1:arm64 (9.2.1-8) ... Selecting previously unselected package linux-libc-dev:arm64. Preparing to unpack .../80-linux-libc-dev_5.2.9-2_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.2.9-2) ... Selecting previously unselected package libc6-dev:arm64. Preparing to unpack .../81-libc6-dev_2.29-2_arm64.deb ... Unpacking libc6-dev:arm64 (2.29-2) ... Selecting previously unselected package libdivsufsort3:arm64. Preparing to unpack .../82-libdivsufsort3_2.0.1-4_arm64.deb ... Unpacking libdivsufsort3:arm64 (2.0.1-4) ... Selecting previously unselected package libdivsufsort-dev:arm64. Preparing to unpack .../83-libdivsufsort-dev_2.0.1-4_arm64.deb ... Unpacking libdivsufsort-dev:arm64 (2.0.1-4) ... Selecting previously unselected package libgomp1:arm64. Preparing to unpack .../84-libgomp1_9.2.1-8_arm64.deb ... Unpacking libgomp1:arm64 (9.2.1-8) ... Selecting previously unselected package libitm1:arm64. Preparing to unpack .../85-libitm1_9.2.1-8_arm64.deb ... Unpacking libitm1:arm64 (9.2.1-8) ... Selecting previously unselected package liblsan0:arm64. Preparing to unpack .../86-liblsan0_9.2.1-8_arm64.deb ... Unpacking liblsan0:arm64 (9.2.1-8) ... Selecting previously unselected package libtsan0:arm64. Preparing to unpack .../87-libtsan0_9.2.1-8_arm64.deb ... Unpacking libtsan0:arm64 (9.2.1-8) ... Selecting previously unselected package libstdc++6:arm64. Preparing to unpack .../88-libstdc++6_9.2.1-8_arm64.deb ... Unpacking libstdc++6:arm64 (9.2.1-8) ... Selecting previously unselected package libubsan1:arm64. Preparing to unpack .../89-libubsan1_9.2.1-8_arm64.deb ... Unpacking libubsan1:arm64 (9.2.1-8) ... Selecting previously unselected package libgcc-9-dev:arm64. Preparing to unpack .../90-libgcc-9-dev_9.2.1-8_arm64.deb ... Unpacking libgcc-9-dev:arm64 (9.2.1-8) ... Selecting previously unselected package libstdc++-9-dev:arm64. Preparing to unpack .../91-libstdc++-9-dev_9.2.1-8_arm64.deb ... Unpacking libstdc++-9-dev:arm64 (9.2.1-8) ... Selecting previously unselected package sbuild-build-depends-main-dummy:arm64. Preparing to unpack .../92-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libarchive-zip-perl (1.66-2) ... Setting up libglib2.0-0:amd64 (2.60.6-2) ... No schema files found: doing nothing. Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-8cross1) ... Setting up libdebhelper-perl (12.6.1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:arm64 (5.2.9-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190909-1) ... Setting up cpp-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.29-1cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up linux-libc-dev-arm64-cross (5.2.9-2cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up gcc-9-base:arm64 (9.2.1-8) ... Setting up libatomic1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up liblsan0-arm64-cross (9.2.1-8cross1) ... Setting up libgomp1-arm64-cross (9.2.1-8cross1) ... Setting up libtool (2.4.6-11) ... Setting up libtsan0-arm64-cross (9.2.1-8cross1) ... Setting up m4 (1.4.18-2) ... Setting up libc6-dev-arm64-cross (2.29-1cross7) ... Setting up libasan5-arm64-cross (9.2.1-8cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (9.2.1-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libc6:arm64 (2.29-2) ... Setting up libc6-dev:arm64 (2.29-2) ... Setting up libdivsufsort3:arm64 (2.0.1-4) ... Setting up libitm1:arm64 (9.2.1-8) ... Setting up libdivsufsort-dev:arm64 (2.0.1-4) ... Setting up libgcc1:arm64 (1:9.2.1-8) ... Setting up libgomp1:arm64 (9.2.1-8) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.2.1-8) ... Setting up libatomic1:arm64 (9.2.1-8) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libstdc++6:arm64 (9.2.1-8) ... Setting up liblsan0:arm64 (9.2.1-8) ... Setting up libtsan0:arm64 (9.2.1-8) ... Setting up debhelper (12.6.1) ... Setting up libubsan1:arm64 (9.2.1-8) ... Setting up libgcc-9-dev:arm64 (9.2.1-8) ... Setting up libstdc++-9-dev:arm64 (9.2.1-8) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-22 g++-9_9.2.1-8 gcc-8_8.3.0-22 gcc-9_9.2.1-8 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-aarch64-linux-gnu_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-22 cpp-9_9.2.1-8 cpp-9-aarch64-linux-gnu_9.2.1-8cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-22 g++-9_9.2.1-8 g++-9-aarch64-linux-gnu_9.2.1-8cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-22 gcc-8-base_8.3.0-22 gcc-9_9.2.1-8 gcc-9-aarch64-linux-gnu_9.2.1-8cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-8cross1 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.66-2 libasan5_9.2.1-8 libasan5-arm64-cross_9.2.1-8cross1 libatomic1_9.2.1-8 libatomic1-arm64-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-arm64-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-arm64-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdivsufsort-dev_2.0.1-4 libdivsufsort3_2.0.1-4 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-22 libgcc-9-dev_9.2.1-8 libgcc-9-dev-arm64-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-arm64-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8 libgomp1-arm64-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-8 libitm1-arm64-cross_9.2.1-8cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-8 liblsan0-arm64-cross_9.2.1-8cross1 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-22 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.2.1-8 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libtsan0-arm64-cross_9.2.1-8cross1 libubsan1_9.2.1-8 libubsan1-arm64-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-arm64-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019c-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any all Version: 3.2.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), libdivsufsort-dev Package-List: hmmer deb science optional arch=any hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=all Checksums-Sha1: e43d8023611ab7e3aead965fde5fb5fb5f157c1d 5974072 hmmer_3.2.1+dfsg.orig.tar.xz 6e4f87c605d37025ab3e466b368703ca3554cf8e 9440 hmmer_3.2.1+dfsg-2.debian.tar.xz Checksums-Sha256: cfbb105edc1aba8bab22bf254a2144f894dd53c36a6d58b93e818efcdf649d2d 5974072 hmmer_3.2.1+dfsg.orig.tar.xz 27aa4cb76bb218a0631ebea0d74689cbc214e64e48620a168e14b3fc41e88893 9440 hmmer_3.2.1+dfsg-2.debian.tar.xz Files: 9b0b196a7b0d48792c96be46dd9b80a0 5974072 hmmer_3.2.1+dfsg.orig.tar.xz bd3543bd140428a4d68e614c35d2647d 9440 hmmer_3.2.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl2KEngACgkQL9i+2sAg 7tG2kxAAhE9PRQhVUQ36K8IveL4pralIiwtou0j+7zV8BgCTJqgEsG9yin5Kc2DJ R79dzhCHopL8v/xGNn5Mx19gXi2KMIq339YMVDEI0TSB7VGIJ6U7NcmD93PJqVQ9 LGbGQV31IG8X2cY4/nmz4gf3oONqB1Mg7b8aBht3TOHDfVPusLhSk+1QBvL4qwKf B8bmoZttKAGwcEd8qaLH3zHIohnSCDd0loq2gz24OA6wOtbAW0uD0kN4w0+kvHXu r7IUZ5RaVyasj5pEwPGHfNwkhsoMTV2umgupDgpp1WFuJgnoA8oxl7IPZNc0rxkc P60jklWNChujIlk/a8502rS/bEXZizPsw0h3fZrCkCKI5rbS2HcUcR7CsdLfo+ML HopE3n8xUbiXMt2pS6tNJPX6n91vOuFb4+qF5B9+WKfEasWhh4BGIBx7znnTvMFN eS4PfbsQ7KXNc1pHdORa9smgDCsj04Yomh0CO600uGjZqXVnN9o7VtmxHOKx/Zo/ BKyUEaeMZCHMmQqLHUjHzCMW2kLp9anOj2RGkK5WmSVGhXcfMlDdF7NS1bHTJAei 8TINAgSaFZLEozHOOdW/5vfGANXcaXg7EnLUj4vAX80xEgJEAbeoe7+XdUkWFO3i S7DfssON2BnpGeK0xuDiXbO1x8epxExFxmcrcZ0C+rsyPSxepLY= =/n5c -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 24 12:56:24 2019 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hmmer_3.2.1+dfsg-2.dsc dpkg-source: info: extracting hmmer in /<> dpkg-source: info: unpacking hmmer_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.2.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2f46c464-52be-435a-a065-53bf926045c5 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status find . -name Makefile -delete make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --enable-threads --enable-sse configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache configure: Configuring HMMER3 for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for C compiler vendor... gnu checking for aarch64-linux-gnu-gcc option to accept ISO C99... none needed checking for aarch64-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether aarch64-linux-gnu-gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether aarch64-linux-gnu-gcc can compile our SSE code... no configure: error: in `/<>': configure: error: Unable to compile our SSE implementations. Try another compiler? See `config.log' for more details tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HMMER configure 3.2.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/aarch64-linux-gnu --libexecdir=${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --enable-threads --enable-sse ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.9.0-8-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.144-3.1 (2019-02-19) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2186: loading site script /etc/dpkg-cross/cross-config.arm64 | # read in package-specific and global values. | echo "Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64)" | foobar=`dirname $ac_site_file` | echo "Reading $foobar/cross-config.cache" | . `dirname $ac_site_file`/cross-config.cache | # now ensure the real architecture-dependent values take priority | ac_cv_c_bigendian=no | ac_cv_c_char_unsigned=yes | ac_cv_sizeof_long_long=8 | ac_cv_sizeof_unsigned_long_long=8 | ac_cv_sizeof_long=8 | ac_cv_sizeof_unsigned_long=8 | ac_cv_sizeof_int=4 | ac_cv_sizeof_unsigned_int=4 | ac_cv_sizeof_short=2 | ac_cv_sizeof_unsigned_short=2 | ac_cv_sizeof_char=1 | ac_cv_sizeof_unsigned_char=1 | ac_cv_sizeof_signed_char=1 | ac_cv_sizeof_float=4 | ac_cv_sizeof_double=8 | ac_cv_sizeof_long_double=16 | ac_cv_sizeof_void_p=8 | ac_cv_sizeof_char_p=8 | ac_cv_sizeof_time_t=8 | | #lots of things: turn off stack protector | libc_cv_fno_stack_protector=no | | # Supplemental groups are disabled by default when crossing coreutils. | # Should this go in generic file? | ac_cv_func_getgroups_works=yes | | #Syscall resumable test passes (ie wait syscall is resumable) | ac_cv_sys_restartable_syscalls=yes | | #Void ptr longer than long | ap_cv_void_ptr_lt_long=no | | #apr | #Verified with native test program | apr_cv_process_shared_works=yes | #Verifed with native test program | apr_cv_mutex_robust_shared=yes | #probably more general than just APR. verifed by cross compiling and running test from configure | ac_cv_sizeof_struct_iovec=16 | | # mysql | # mysql wants to know stack direction: | # STACK_DIRECTION > 0 => grows toward higher addresses | # STACK_DIRECTION < 0 => grows toward lower addresses | # STACK_DIRECTION = 0 => direction of growth unknown | ac_cv_c_stack_direction=-1 | | | path=`dirname $ac_site_file` | # now allow package-specific architecture-independent values to be set | if [ -d $path/cross-config.d/arm64/ ]; then | for file in `ls $path/cross-config.d/arm64/`; do | if [ "$file" = "$PACKAGE" -o "$file" = "$PACKAGE_NAME" ]; then | [ -d $path/cross-config.d/arm64/$file ] || . $path/cross-config.d/arm64/$file | HAVE_PKG_CACHE=1 | fi | done | fi | | if [ -z "$HAVE_PKG_CACHE" ]; then | # orbit2 - only needed until liborbit-dev provides these directly | # using the mechanism above. | if [ "$PACKAGE" = "orbit2" -o "$PACKAGE_NAME" = "ORBit2" ]; then | ac_cv_alignof_CORBA_octet=1 | ac_cv_alignof_CORBA_boolean=1 | ac_cv_alignof_CORBA_char=1 | ac_cv_alignof_CORBA_wchar=2 | ac_cv_alignof_CORBA_short=2 | ac_cv_alignof_CORBA_long=4 | ac_cv_alignof_CORBA_long_long=4 | ac_cv_alignof_CORBA_float=4 | ac_cv_alignof_CORBA_double=4 | ac_cv_alignof_CORBA_long_double=4 | ac_cv_alignof_CORBA_struct=4 | ac_cv_alignof_CORBA_pointer=4 | fi | fi configure:2282: Configuring HMMER3 for your system. configure:2431: checking build system type configure:2445: result: x86_64-pc-linux-gnu configure:2465: checking host system type configure:2478: result: aarch64-unknown-linux-gnu configure:2621: checking for aarch64-linux-gnu-gcc configure:2637: found /usr/bin/aarch64-linux-gnu-gcc configure:2648: result: aarch64-linux-gnu-gcc configure:2917: checking for C compiler version configure:2926: aarch64-linux-gnu-gcc --version >&5 aarch64-linux-gnu-gcc (Debian 9.2.1-8) 9.2.1 20190909 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2937: $? = 0 configure:2926: aarch64-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=aarch64-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/aarch64-linux-gnu/9/lto-wrapper Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 9.2.1-8' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --without-target-system-zlib --enable-libpth-m2 --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=aarch64-linux-gnu --program-prefix=aarch64-linux-gnu- --includedir=/usr/aarch64-linux-gnu/include Thread model: posix gcc version 9.2.1 20190909 (Debian 9.2.1-8) configure:2937: $? = 0 configure:2926: aarch64-linux-gnu-gcc -V >&5 aarch64-linux-gnu-gcc: error: unrecognized command line option '-V' aarch64-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:2937: $? = 1 configure:2926: aarch64-linux-gnu-gcc -qversion >&5 aarch64-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? aarch64-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:2937: $? = 1 configure:2957: checking whether the C compiler works configure:2979: aarch64-linux-gnu-gcc -flto -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 configure:2983: $? = 0 configure:3031: result: yes configure:3034: checking for C compiler default output file name configure:3036: result: a.out configure:3042: checking for suffix of executables configure:3049: aarch64-linux-gnu-gcc -o conftest -flto -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 configure:3053: $? = 0 configure:3075: result: configure:3097: checking whether we are cross compiling configure:3135: result: yes configure:3140: checking for suffix of object files configure:3162: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3166: $? = 0 configure:3187: result: o configure:3191: checking whether we are using the GNU C compiler configure:3210: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3210: $? = 0 configure:3219: result: yes configure:3228: checking whether aarch64-linux-gnu-gcc accepts -g configure:3248: aarch64-linux-gnu-gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3248: $? = 0 configure:3289: result: yes configure:3306: checking for aarch64-linux-gnu-gcc option to accept ISO C89 configure:3369: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3369: $? = 0 configure:3382: result: none needed configure:3407: checking how to run the C preprocessor configure:3438: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:3438: $? = 0 configure:3452: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:19:10: fatal error: ac_nonexistent.h: No such file or directory 19 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:3452: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | #include configure:3477: result: aarch64-linux-gnu-gcc -E configure:3497: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:3497: $? = 0 configure:3511: aarch64-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:19:10: fatal error: ac_nonexistent.h: No such file or directory 19 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:3511: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | #include configure:3553: checking for a BSD-compatible install configure:3621: result: /usr/bin/install -c configure:3635: checking for aarch64-linux-gnu-ranlib configure:3651: found /usr/bin/aarch64-linux-gnu-ranlib configure:3662: result: aarch64-linux-gnu-ranlib configure:3726: checking for ar configure:3745: found /usr/bin/ar configure:3758: result: /usr/bin/ar configure:3766: checking whether ln -s works configure:3770: result: yes configure:3780: checking for C compiler vendor configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__ICC) || defined(__ECC) || defined(__INTEL_COMPILER)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__xlc__) || defined(__xlC__) || defined(__IBMC__) || defined(__IBMCPP__)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__PATHCC__) || defined(__PATHSCALE__)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__clang__)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(_CRAYC)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c: In function 'main': conftest.c:25:9: error: 'thisisanerror' undeclared (first use in this function) 25 | thisisanerror; | ^~~~~~~~~~~~~ conftest.c:25:9: note: each undeclared identifier is reported only once for each function it appears in configure:3827: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | /* end confdefs.h. */ | | int | main () | { | | #if !(defined(__FUJITSU)) | thisisanerror; | #endif | | ; | return 0; | } configure:3827: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3827: $? = 0 configure:3835: result: gnu configure:3843: checking for aarch64-linux-gnu-gcc option to accept ISO C99 configure:3992: aarch64-linux-gnu-gcc -c -flto -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3992: $? = 0 configure:4005: result: none needed configure:4113: checking for aarch64-linux-gnu-gcc option to accept ISO Standard C configure:4124: result: none needed configure:4368: checking for a sed that does not truncate output configure:4432: result: /bin/sed configure:4438: checking for grep that handles long lines and -e configure:4496: result: /bin/grep configure:4501: checking for egrep configure:4563: result: /bin/grep -E configure:4751: checking whether aarch64-linux-gnu-gcc is Clang configure:4776: result: no configure:4899: checking whether pthreads work with -pthread configure:4993: aarch64-linux-gnu-gcc -o conftest -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 configure:4993: $? = 0 configure:5002: result: yes configure:5021: checking for joinable pthread attribute configure:5039: aarch64-linux-gnu-gcc -o conftest -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 configure:5039: $? = 0 configure:5047: result: PTHREAD_CREATE_JOINABLE configure:5061: checking whether more special flags are required for pthreads configure:5074: result: no configure:5082: checking for PTHREAD_PRIO_INHERIT configure:5098: aarch64-linux-gnu-gcc -o conftest -flto -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 configure:5098: $? = 0 configure:5107: result: yes configure:5332: checking whether aarch64-linux-gnu-gcc can compile our SSE code configure:5364: aarch64-linux-gnu-gcc -o conftest -flto -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 conftest.c:23:10: fatal error: x86intrin.h: No such file or directory 23 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:5364: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_PTHREAD 1 | #define HMMER_THREADS 1 | /* end confdefs.h. */ | | #include | #include | int stub_sse(void) { | __m128i v1 = _mm_set1_epi32(42); | __m128i v2 = _mm_set1_epi32(86); | union { __m128i v; int32_t x[4]; } v3; | v3.v = _mm_add_epi32(v1, v2); | return (int) v3.x[0]; | } | int main(void) { if (stub_sse() != 128) return 1; else return 0; } | configure:5364: aarch64-linux-gnu-gcc -o conftest -flto -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -flto conftest.c >&5 aarch64-linux-gnu-gcc: error: unrecognized command line option '-msse2' configure:5364: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HMMER" | #define PACKAGE_TARNAME "hmmer" | #define PACKAGE_VERSION "3.2.1" | #define PACKAGE_STRING "HMMER 3.2.1" | #define PACKAGE_BUGREPORT "sean@eddylab.org" | #define PACKAGE_URL "" | #define HMMER_DATE "June 2018" | #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define HMMER_LICENSE "Freely distributed under the BSD open source license." | #define HMMER_VERSION "3.2.1" | #define HMMER_URL "http://hmmer.org/" | #define EASEL_DATE "June 2018" | #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." | #define EASEL_LICENSE "Freely distributed under the BSD open source license." | #define EASEL_VERSION "0.45h" | #define eslDEBUGLEVEL 0 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_PTHREAD 1 | #define HMMER_THREADS 1 | /* end confdefs.h. */ | | #include | #include | int stub_sse(void) { | __m128i v1 = _mm_set1_epi32(42); | __m128i v2 = _mm_set1_epi32(86); | union { __m128i v; int32_t x[4]; } v3; | v3.v = _mm_add_epi32(v1, v2); | return (int) v3.x[0]; | } | int main(void) { if (stub_sse() != 128) return 1; else return 0; } | configure:5373: result: no configure:5402: error: in `/<>': configure:5404: error: Unable to compile our SSE implementations. Try another compiler? See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_char_unsigned=yes ac_cv_c_compiler_gnu=yes ac_cv_c_stack_direction=-1 ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-flto ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=-flto ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=aarch64-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_getgroups_works=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_host=aarch64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_AR=/usr/bin/ar ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_CC=aarch64-linux-gnu-gcc ac_cv_prog_CPP='aarch64-linux-gnu-gcc -E' ac_cv_prog_RANLIB=aarch64-linux-gnu-ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_sizeof_char=1 ac_cv_sizeof_char_p=8 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_short=2 ac_cv_sizeof_signed_char=1 ac_cv_sizeof_struct_iovec=16 ac_cv_sizeof_time_t=8 ac_cv_sizeof_unsigned_char=1 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=8 ac_cv_sizeof_unsigned_long_long=8 ac_cv_sizeof_unsigned_short=2 ac_cv_sizeof_void_p=8 ac_cv_sys_restartable_syscalls=yes ap_cv_void_ptr_lt_long=no apr_cv_mutex_robust_shared=yes apr_cv_process_shared_works=yes ax_cv_PTHREAD_CLANG=no ax_cv_PTHREAD_JOINABLE_ATTR=PTHREAD_CREATE_JOINABLE ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_PTHREAD_SPECIAL_FLAGS=no ax_cv_c_compiler_vendor=gnu libc_cv_fno_stack_protector=no lt_cv_sys_lib_dlsearch_path_spec=' /lib/aarch64-linux-gnu /usr/lib/aarch64-linux-gnu /lib /usr/lib /usr/local/lib' ## ----------------- ## ## Output variables. ## ## ----------------- ## AR='/usr/bin/ar' AVX512_CFLAGS='' AVX_CFLAGS='' CC='aarch64-linux-gnu-gcc' CFLAGS='-flto' CPP='aarch64-linux-gnu-gcc -E' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' DEFS='' EASEL_COPYRIGHT='Copyright (C) 2018 Howard Hughes Medical Institute.' EASEL_DATE='June 2018' EASEL_LICENSE='Freely distributed under the BSD open source license.' EASEL_URL='http://bioeasel.org/' EASEL_VERSION='0.45h' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GREP='/bin/grep' GROUPHMMERLIBS='' HAVE_GZIP='' HMMERIMPLLIB='' HMMER_COPYRIGHT='Copyright (C) 2018 Howard Hughes Medical Institute.' HMMER_DATE='June 2018' HMMER_ESLDIR='easel' HMMER_LICENSE='Freely distributed under the BSD open source license.' HMMER_URL='http://hmmer.org/' HMMER_VERSION='3.2.1' IMPL_CHOICE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' LDFLAGS='-flto' LIBGSL='' LIBOBJS='' LIBS='' LN_S='ln -s' LTLIBOBJS='' MPICC='' MPILIBS='' MPI_BENCHMARKS='' MPI_UTESTS='' NEON_CFLAGS='' OBJEXT='o' PACKAGE_BUGREPORT='sean@eddylab.org' PACKAGE_NAME='HMMER' PACKAGE_STRING='HMMER 3.2.1' PACKAGE_TARNAME='hmmer' PACKAGE_URL='' PACKAGE_VERSION='3.2.1' PATH_SEPARATOR=':' PTHREAD_CC='aarch64-linux-gnu-gcc' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' RANLIB='aarch64-linux-gnu-ranlib' SED='/bin/sed' SHELL='/bin/bash' SSE4_CFLAGS='' SSE_CFLAGS='' VMX_CFLAGS='' ac_ct_CC='' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='aarch64-unknown-linux-gnu' host_alias='aarch64-linux-gnu' host_cpu='aarch64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' libdir='${prefix}/lib/aarch64-linux-gnu' libexecdir='${prefix}/lib/aarch64-linux-gnu' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HMMER" #define PACKAGE_TARNAME "hmmer" #define PACKAGE_VERSION "3.2.1" #define PACKAGE_STRING "HMMER 3.2.1" #define PACKAGE_BUGREPORT "sean@eddylab.org" #define PACKAGE_URL "" #define HMMER_DATE "June 2018" #define HMMER_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." #define HMMER_LICENSE "Freely distributed under the BSD open source license." #define HMMER_VERSION "3.2.1" #define HMMER_URL "http://hmmer.org/" #define EASEL_DATE "June 2018" #define EASEL_COPYRIGHT "Copyright (C) 2018 Howard Hughes Medical Institute." #define EASEL_LICENSE "Freely distributed under the BSD open source license." #define EASEL_VERSION "0.45h" #define eslDEBUGLEVEL 0 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_PTHREAD 1 #define HMMER_THREADS 1 configure: exit 1 dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --enable-threads --enable-sse returned exit code 1 make[1]: *** [debian/rules:36: override_dh_auto_configure] Error 255 make[1]: Leaving directory '/<>' make: *** [debian/rules:18: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-09-25T03:44:22Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 24084 Build-Time: 10 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 17 Job: hmmer_3.2.1+dfsg-2 Machine Architecture: amd64 Package: hmmer Package-Time: 40 Source-Version: 3.2.1+dfsg-2 Space: 24084 Status: attempted Version: 3.2.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2019-09-25T03:44:22Z Build needed 00:00:40, 24084k disk space