sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.10.2-3 (mipsel) Fri, 20 Mar 2020 10:13:57 +0000 | +==============================================================================+ Package: htslib Version: 1.10.2-3 Source Version: 1.10.2-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-017a4b72-8f4e-4195-b82c-dd76c9da962e' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-HxOEpc/resolver-Tb1iFX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-20-0814.17.pdiff [5738 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-03-20-0814.17.pdiff [5738 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-20-0814.17.pdiff [17.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-03-20-0814.17.pdiff [17.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7913 kB] Fetched 8139 kB in 1s (5550 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu gzip libbinutils libctf-nobfd0 libctf0 sysvinit-utils 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4500 kB of archives. After this operation, 39.9 kB disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 gzip amd64 1.10-2 [131 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 sysvinit-utils amd64 2.96-3 [44.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libctf0 amd64 2.34-5 [45.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libctf-nobfd0 amd64 2.34-5 [101 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.34-5 [59.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.34-5 [1586 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.34-5 [470 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.34-5 [2063 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4500 kB in 0s (70.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12838 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.10-2_amd64.deb ... Unpacking gzip (1.10-2) over (1.10-1) ... Setting up gzip (1.10-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12838 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-3_amd64.deb ... Unpacking sysvinit-utils (2.96-3) over (2.96-2.1) ... Setting up sysvinit-utils (2.96-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12837 files and directories currently installed.) Preparing to unpack .../0-libctf0_2.34-5_amd64.deb ... Unpacking libctf0:amd64 (2.34-5) over (2.34-4) ... Preparing to unpack .../1-libctf-nobfd0_2.34-5_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.34-5) over (2.34-4) ... Preparing to unpack .../2-binutils_2.34-5_amd64.deb ... Unpacking binutils (2.34-5) over (2.34-4) ... Preparing to unpack .../3-binutils-x86-64-linux-gnu_2.34-5_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.34-5) over (2.34-4) ... Preparing to unpack .../4-libbinutils_2.34-5_amd64.deb ... Unpacking libbinutils:amd64 (2.34-5) over (2.34-4) ... Preparing to unpack .../5-binutils-common_2.34-5_amd64.deb ... Unpacking binutils-common:amd64 (2.34-5) over (2.34-4) ... Setting up binutils-common:amd64 (2.34-5) ... Setting up libctf-nobfd0:amd64 (2.34-5) ... Setting up libbinutils:amd64 (2.34-5) ... Setting up libctf0:amd64 (2.34-5) ... Setting up binutils-x86-64-linux-gnu (2.34-5) ... Setting up binutils (2.34-5) ... Processing triggers for libc-bin (2.30-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1325 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (dsc) [2312 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (tar) [1306 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (diff) [16.9 kB] Fetched 1325 kB in 0s (40.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-HxOEpc/htslib-1.10.2' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-HxOEpc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [444 B] Get:5 copy:/<>/apt_archive ./ Packages [533 B] Fetched 1934 B in 0s (88.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libbrotli1:mipsel libbsd0 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libcurl4-gnutls-dev:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mipsel libdeflate0:mipsel libelf1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc1-mipsel-cross libgcrypt20:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgssapi-krb5-2:mipsel libhogweed5:mipsel libicu63 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libnettle7:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libssh2-1:mipsel libssl-dev:mipsel libssl1.1:mipsel libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel libcurl4-doc:mipsel libgnutls28-dev:mipsel libidn11-dev:mipsel libkrb5-dev:mipsel libldap2-dev:mipsel librtmp-dev:mipsel libssh2-1-dev:mipsel pkg-config:mipsel rng-tools:mipsel gnutls-bin:mipsel krb5-doc:mipsel krb5-user:mipsel liblzma-doc:mipsel libssl-doc:mipsel libstdc++-9-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mipsel ca-certificates:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mipsel krb5-locales:mipsel publicsuffix:mipsel libsasl2-modules:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-9-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libbrotli1:mipsel libbsd0 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libcurl4-gnutls-dev:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mipsel libdeflate0:mipsel libelf1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc1-mipsel-cross libgcrypt20:mipsel libglib2.0-0 libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgpg-error0:mipsel libgssapi-krb5-2:mipsel libhogweed5:mipsel libicu63 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2:mipsel libldap-common liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libnettle7:mipsel libnghttp2-14:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libsigsegv2 libssh2-1:mipsel libssl-dev:mipsel libssl1.1:mipsel libstdc++-9-dev libstdc++-9-dev:mipsel libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 84.2 MB of archives. After this operation, 329 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10-20200312-2 [196 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-3 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-2cross5 [2310 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.15-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-2 [2633 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-3 [1677 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-3 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.2.1-24cross1 [195 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.2.1-24cross1 [6463 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.2.1-24cross1 [191 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.29-8cross1 [1196 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:9.2.1-24cross1 [46.5 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 9.2.1-24cross1 [79.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 9.2.1-24cross1 [6656 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.2.1-24cross1 [222 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.2.1-24cross1 [6811 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 9.2.1-24cross1 [401 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.8-1cross1 [1138 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.29-8cross1 [2266 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.2.1-24cross1 [1706 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.2.1-24cross1 [7043 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-4 [709 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.1-1 [1341 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.2 [26.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10-20200312-2 [46.1 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.15-1 [113 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-2 [2423 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10-20200312-2 [6724 B] Get:84 http://debian.oregonstate.edu/debian unstable/main mipsel libbrotli1 mipsel 1.0.7-6 [266 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.8-2 [45.9 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.4.19-1 [1068 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.15-1 [134 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-2 [2268 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-dev mipsel 1.0.8-2 [31.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.45.5-2 [71.1 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp10 mipsel 2:6.2.0+dfsg-4 [225 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel libnettle7 mipsel 3.5.1+really3.5.1-2 [247 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libhogweed5 mipsel 3.5.1+really3.5.1-2 [130 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libunistring2 mipsel 0.9.10-2 [360 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-0 mipsel 2.3.0-1 [84.5 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libffi7 mipsel 3.3-3 [20.0 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit0 mipsel 0.23.20-1 [276 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6 mipsel 4.16.0-2 [53.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls30 mipsel 3.6.12-2 [1073 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.17-6 [63.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.17-6 [119 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1e-1 [1184 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.17-6 [340 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.17-6 [141 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel libdb5.3 mipsel 5.3.28+dfsg1-0.6 [598 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-modules-db mipsel 2.1.27+dfsg-2 [68.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libsasl2-2 mipsel 2.1.27+dfsg-2 [101 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-2 [92.0 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mipsel libldap-2.4-2 mipsel 2.4.49+dfsg-2 [206 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mipsel libnghttp2-14 mipsel 1.40.0-1 [82.3 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mipsel libpsl5 mipsel 0.21.0-1 [54.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mipsel librtmp1 mipsel 2.4+20151223.gitfa8646d.1-2+b1 [55.7 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mipsel libgpg-error0 mipsel 1.37-1 [69.5 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mipsel libgcrypt20 mipsel 1.8.5-5 [538 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mipsel libssh2-1 mipsel 1.8.0-2.1 [134 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mipsel libcurl3-gnutls mipsel 7.68.0-1 [302 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mipsel libcurl4-gnutls-dev mipsel 7.68.0-1 [422 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mipsel libdeflate0 mipsel 1.5-3 [48.8 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mipsel libdeflate-dev mipsel 1.5-3 [43.8 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10-20200312-2 [92.2 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-3 [222 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma5 mipsel 5.2.4-1+b1 [153 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mipsel liblzma-dev mipsel 5.2.4-1+b1 [215 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mipsel libssl-dev mipsel 1.1.1e-1 [1626 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10-20200312-2 [435 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-3 [1693 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.2 MB in 1s (104 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12837 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../007-gcc-10-base_10-20200312-2_mipsel.deb ... Unpacking gcc-10-base:mipsel (10-20200312-2) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../008-gcc-9-base_9.3.0-3_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.3.0-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../011-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../021-binutils-mipsel-linux-gnu_2.34-2cross5_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.34-2cross5) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../022-libcrypt-dev_1%3a4.4.15-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.15-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../023-libc6-dev_2.30-2_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-2) ... Selecting previously unselected package libstdc++-9-dev:amd64. Preparing to unpack .../024-libstdc++-9-dev_9.3.0-3_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-3) ... Selecting previously unselected package g++-9. Preparing to unpack .../025-g++-9_9.3.0-3_amd64.deb ... Unpacking g++-9 (9.3.0-3) ... Selecting previously unselected package g++. Preparing to unpack .../026-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../027-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu-base:amd64. Preparing to unpack .../028-gcc-9-mipsel-linux-gnu-base_9.2.1-24cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu-base:amd64 (9.2.1-24cross1) ... Selecting previously unselected package cpp-9-mipsel-linux-gnu. Preparing to unpack .../029-cpp-9-mipsel-linux-gnu_9.2.1-24cross1_amd64.deb ... Unpacking cpp-9-mipsel-linux-gnu (9.2.1-24cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../030-cpp-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../031-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base-mipsen. Preparing to unpack .../032-gcc-9-cross-base-mipsen_9.2.1-24cross1_all.deb ... Unpacking gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Selecting previously unselected package libc6-mipsel-cross. Preparing to unpack .../033-libc6-mipsel-cross_2.29-8cross1_all.deb ... Unpacking libc6-mipsel-cross (2.29-8cross1) ... Selecting previously unselected package libgcc1-mipsel-cross. Preparing to unpack .../034-libgcc1-mipsel-cross_1%3a9.2.1-24cross1_all.deb ... Unpacking libgcc1-mipsel-cross (1:9.2.1-24cross1) ... Selecting previously unselected package libgomp1-mipsel-cross. Preparing to unpack .../035-libgomp1-mipsel-cross_9.2.1-24cross1_all.deb ... Unpacking libgomp1-mipsel-cross (9.2.1-24cross1) ... Selecting previously unselected package libatomic1-mipsel-cross. Preparing to unpack .../036-libatomic1-mipsel-cross_9.2.1-24cross1_all.deb ... Unpacking libatomic1-mipsel-cross (9.2.1-24cross1) ... Selecting previously unselected package libgcc-9-dev-mipsel-cross. Preparing to unpack .../037-libgcc-9-dev-mipsel-cross_9.2.1-24cross1_all.deb ... Unpacking libgcc-9-dev-mipsel-cross (9.2.1-24cross1) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu. Preparing to unpack .../038-gcc-9-mipsel-linux-gnu_9.2.1-24cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu (9.2.1-24cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../039-gcc-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../040-libstdc++6-mipsel-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (9.2.1-24cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../041-linux-libc-dev-mipsel-cross_5.4.8-1cross1_all.deb ... Unpacking linux-libc-dev-mipsel-cross (5.4.8-1cross1) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../042-libc6-dev-mipsel-cross_2.29-8cross1_all.deb ... Unpacking libc6-dev-mipsel-cross (2.29-8cross1) ... Selecting previously unselected package libstdc++-9-dev-mipsel-cross. Preparing to unpack .../043-libstdc++-9-dev-mipsel-cross_9.2.1-24cross1_all.deb ... Unpacking libstdc++-9-dev-mipsel-cross (9.2.1-24cross1) ... Selecting previously unselected package g++-9-mipsel-linux-gnu. Preparing to unpack .../044-g++-9-mipsel-linux-gnu_9.2.1-24cross1_amd64.deb ... Unpacking g++-9-mipsel-linux-gnu (9.2.1-24cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../045-g++-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../046-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../047-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../048-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../049-libxml2_2.9.10+dfsg-4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../050-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../051-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../052-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../053-libxml-libxml-perl_2.0134+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../054-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../055-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../056-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../057-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../058-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../059-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../060-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../061-crossbuild-essential-mipsel_12.8_all.deb ... Unpacking crossbuild-essential-mipsel (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../062-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../063-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../064-libdebhelper-perl_12.9_all.deb ... Unpacking libdebhelper-perl (12.9) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../065-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../066-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../067-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../068-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../069-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../070-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../071-libglib2.0-0_2.64.1-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.64.1-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../072-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../073-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... 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Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../120-libgomp1_10-20200312-2_mipsel.deb ... Unpacking libgomp1:mipsel (10-20200312-2) ... Selecting previously unselected package libgcc-9-dev:mipsel. Preparing to unpack .../121-libgcc-9-dev_9.3.0-3_mipsel.deb ... Unpacking libgcc-9-dev:mipsel (9.3.0-3) ... Selecting previously unselected package liblzma5:mipsel. Preparing to unpack .../122-liblzma5_5.2.4-1+b1_mipsel.deb ... Unpacking liblzma5:mipsel (5.2.4-1+b1) ... Selecting previously unselected package liblzma-dev:mipsel. Preparing to unpack .../123-liblzma-dev_5.2.4-1+b1_mipsel.deb ... Unpacking liblzma-dev:mipsel (5.2.4-1+b1) ... Selecting previously unselected package libssl-dev:mipsel. Preparing to unpack .../124-libssl-dev_1.1.1e-1_mipsel.deb ... Unpacking libssl-dev:mipsel (1.1.1e-1) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../125-libstdc++6_10-20200312-2_mipsel.deb ... Unpacking libstdc++6:mipsel (10-20200312-2) ... Selecting previously unselected package libstdc++-9-dev:mipsel. Preparing to unpack .../126-libstdc++-9-dev_9.3.0-3_mipsel.deb ... Unpacking libstdc++-9-dev:mipsel (9.3.0-3) ... Selecting previously unselected package zlib1g-dev:mipsel. Preparing to unpack .../127-zlib1g-dev_1%3a1.2.11.dfsg-2_mipsel.deb ... Unpacking zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mipsel. Preparing to unpack .../128-sbuild-build-depends-main-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000002-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.9) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:mipsel (5.4.19-1) ... Setting up libc6-mipsel-cross (2.29-8cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.2.1-24cross1) ... Setting up libldap-common (2.4.49+dfsg-2) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mipsel (10-20200312-2) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libgcc1-mipsel-cross (1:9.2.1-24cross1) ... Setting up binutils-mipsel-linux-gnu (2.34-2cross5) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgomp1-mipsel-cross (9.2.1-24cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up cpp-9-mipsel-linux-gnu (9.2.1-24cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.8-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-4) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mipsel (9.3.0-3) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.3.0-3) ... Setting up libc6-dev-mipsel-cross (2.29-8cross1) ... Setting up libstdc++6-mipsel-cross (9.2.1-24cross1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (9.2.1-24cross1) ... Setting up libgcc-9-dev-mipsel-cross (9.2.1-24cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-3) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up libstdc++-9-dev-mipsel-cross (9.2.1-24cross1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.2.1-24cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up g++-9-mipsel-linux-gnu (9.2.1-24cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up po-debconf (1.0.21) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.15-1) ... Setting up libgcc-s1:mipsel (10-20200312-2) ... Setting up dh-autoreconf (19) ... Setting up libc6:mipsel (2.30-2) ... Setting up libnettle7:mipsel (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:mipsel (1:4.4.15-1) ... Setting up libtasn1-6:mipsel (4.16.0-2) ... Setting up libc6-dev:mipsel (2.30-2) ... Setting up libbz2-1.0:mipsel (1.0.8-2) ... Setting up libdb5.3:mipsel (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:mipsel (10-20200312-2) ... Setting up libbz2-dev:mipsel (1.0.8-2) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up liblzma5:mipsel (5.2.4-1+b1) ... Setting up libgpg-error0:mipsel (1.37-1) ... Setting up libssl1.1:mipsel (1.1.1e-1) ... Setting up libbrotli1:mipsel (1.0.7-6) ... Setting up libffi7:mipsel (3.3-3) ... Setting up libnghttp2-14:mipsel (1.40.0-1) ... Setting up libunistring2:mipsel (0.9.10-2) ... Setting up libdeflate0:mipsel (1.5-3) ... Setting up libgcrypt20:mipsel (1.8.5-5) ... Setting up debhelper (12.9) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up dh-exec (0.23.2) ... Setting up libidn2-0:mipsel (2.3.0-1) ... Setting up libcom-err2:mipsel (1.45.5-2) ... Setting up libgomp1:mipsel (10-20200312-2) ... Setting up libkrb5support0:mipsel (1.17-6) ... Setting up libsasl2-modules-db:mipsel (2.1.27+dfsg-2) ... Setting up libgmp10:mipsel (2:6.2.0+dfsg-4) ... Setting up libp11-kit0:mipsel (0.23.20-1) ... Setting up libssl-dev:mipsel (1.1.1e-1) ... Setting up libatomic1:mipsel (10-20200312-2) ... Setting up libk5crypto3:mipsel (1.17-6) ... Setting up libsasl2-2:mipsel (2.1.27+dfsg-2) ... Setting up liblzma-dev:mipsel (5.2.4-1+b1) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up libssh2-1:mipsel (1.8.0-2.1) ... Setting up libkrb5-3:mipsel (1.17-6) ... Setting up libdeflate-dev:mipsel (1.5-3) ... Setting up libpsl5:mipsel (0.21.0-1) ... Setting up libhogweed5:mipsel (3.5.1+really3.5.1-2) ... Setting up libgcc-9-dev:mipsel (9.3.0-3) ... Setting up libgnutls30:mipsel (3.6.12-2) ... Setting up librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:mipsel (1.17-6) ... Setting up libstdc++-9-dev:mipsel (9.3.0-3) ... Setting up libldap-2.4-2:mipsel (2.4.49+dfsg-2) ... Setting up libcurl3-gnutls:mipsel (7.68.0-1) ... Setting up libcurl4-gnutls-dev:mipsel (7.68.0-1) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-5 dpkg-dev_1.19.7 g++-9_9.3.0-3 gcc-8_8.4.0-1 gcc-9_9.3.0-3 libc6-dev_2.30-2 libstdc++-9-dev_9.3.0-3 libstdc++-9-dev-mipsel-cross_9.2.1-24cross1 libstdc++6_10-20200312-2 libstdc++6-mipsel-cross_9.2.1-24cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5 binutils-common_2.34-5 binutils-mipsel-linux-gnu_2.34-2cross5 binutils-x86-64-linux-gnu_2.34-5 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-1 cpp-9_9.3.0-3 cpp-9-mipsel-linux-gnu_9.2.1-24cross1 cpp-mipsel-linux-gnu_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-3 g++-9-mipsel-linux-gnu_9.2.1-24cross1 g++-mipsel-linux-gnu_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200312-2 gcc-8_8.4.0-1 gcc-8-base_8.4.0-1 gcc-9_9.3.0-3 gcc-9-base_9.3.0-3 gcc-9-cross-base-mipsen_9.2.1-24cross1 gcc-9-mipsel-linux-gnu_9.2.1-24cross1 gcc-9-mipsel-linux-gnu-base_9.2.1-24cross1 gcc-mipsel-linux-gnu_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-3 libatomic1_10-20200312-2 libatomic1-mipsel-cross_9.2.1-24cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-5 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-2 libc-dev-bin_2.30-2 libc6_2.30-2 libc6-dev_2.30-2 libc6-dev-mipsel-cross_2.29-8cross1 libc6-mipsel-cross_2.29-8cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200312-2 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5 libctf0_2.34-5 libcurl3-gnutls_7.68.0-1 libcurl4-gnutls-dev_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdeflate-dev_1.5-3 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.4.0-1 libgcc-9-dev_9.3.0-3 libgcc-9-dev-mipsel-cross_9.2.1-24cross1 libgcc-s1_10-20200312-2 libgcc1_1:10-20200312-2 libgcc1-mipsel-cross_1:9.2.1-24cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200312-2 libgomp1-mipsel-cross_9.2.1-24cross1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200312-2 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblsan0_10-20200312-2 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.21.0-1 libquadmath0_10-20200312-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1 libselinux1_3.0-1+b2 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1e-1 libssl1.1_1.1.1e-1 libstdc++-9-dev_9.3.0-3 libstdc++-9-dev-mipsel-cross_9.2.1-24cross1 libstdc++6_10-20200312-2 libstdc++6-mipsel-cross_9.2.1-24cross1 libsub-override-perl_0.09-2 libsystemd0_245.2-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200312-2 libubsan1_10-20200312-2 libuchardet0_0.0.6-3 libudev1_245.2-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-4 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 linux-libc-dev-mipsel-cross_5.4.8-1cross1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.10.2-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe Homepage: https://github.com/samtools/htslib Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: f137100d2b3fbd214791accee43f49cb95965f1a 1306320 htslib_1.10.2.orig.tar.bz2 92a483283159faf0efe7854237b9c14b9f71f551 16852 htslib_1.10.2-3.debian.tar.xz Checksums-Sha256: e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939 1306320 htslib_1.10.2.orig.tar.bz2 a2396dbd49a516a7c54e8bd9d5913c50a2b038f23ea7f6a91225d7a953d57e2a 16852 htslib_1.10.2-3.debian.tar.xz Files: 9b03764c4809388625ab0b6352b13c93 1306320 htslib_1.10.2.orig.tar.bz2 56ca02acff010375c0094e9bc88152d6 16852 htslib_1.10.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl5FqpQACgkQPCZ2P2xn 5uJkzhAAlbgk54kkBpqKnfnHCZMrlMv+K+/PBmcZz0JGuBZjhUGEIndi4Z0OhSV2 0pkrZYFxEiV6gCkGsUCqt+mr4tjrTLD4TLCV9Yf4eUFQN+jaJpft4NoomXFnPNS1 eYkPENrg5CLMZmlt7dVkUzpZVkIsTjYyGIfbQScqxqpndUd438rJOBn5V8ieSclD YaRKvDrUsJoinNQoZDyPWMdGwA/jGZijbgh0IruTN6yPtaWweVP1Hy6JQKLI/R86 fc/vSAcnEUr3I4sUJ15V5bniihknlVMp2/BDXbOJptuyQs+A4i7ckieidnt4tLM6 6KEbQq+hAvmes71OauPswEH9ylFMM+DUGr8zZ7ZFBZHNiQSddUiNTUfRWqN8FsZh f+g/0gR6C2P9Ra+V0D22d4i6RoimNDLTwCi+cI6XuhLRpNI/57bHDCPH8g6ddmbL QNEwz5u0Sh0z3UM0zdxVmUtVp41qVDPrLFxy7fw1PvOw4S7ep2SMuBm0wpHFOXWf knOG6Iht99rBRUQRq07WDVFEICVnNJHUA0HdNNyq+ukJ+ZWpB51ZJTey94e9s/dG kyIa4KFkF+VRHf1XzdJSrOUzDL3eaKbv67SRo9YPykUF1EfU009PcNv5XmObl0Ou hHc8NpvoSVI1ERkt5qFaHsKlYov39X7CluWtYm6T0DeHJ+q5Dtw= =5gAV -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Feb 13 19:59:16 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.10.2-3.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.10.2.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.10.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying big-endian Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-017a4b72-8f4e-4195-b82c-dd76c9da962e SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.10.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel dpkg-source: info: using options from htslib-1.10.2/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f hts-object-files rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/sam test/test_bgzf test/test_kstring test/test_realn test/test-regidx test/test_str2int test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --enable-libcurl --enable-gcs --enable-s3 configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking for mipsel-linux-gnu-ranlib... mipsel-linux-gnu-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for mipsel-linux-gnu-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking shared library type for mipsel-linux-gnu... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... mipsel-linux-gnu-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... no configure: error: liblzma development files not found The CRAM format may use LZMA2 compression, which is implemented in HTSlib by using compression routines from liblzma . Building HTSlib requires liblzma development files to be installed on the build machine; you may need to ensure a package such as liblzma-dev (on Debian or Ubuntu Linux), xz-devel (on RPM-based Linux distributions or Cygwin), or xz (via Homebrew on macOS) is installed; or build XZ Utils from source. Either configure with --disable-lzma (which will make some CRAM files produced elsewhere unreadable) or resolve this error to build HTSlib. tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HTSlib configure 1.10.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --enable-libcurl --enable-gcs --enable-s3 ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.19.0-6-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2023: loading site script /etc/dpkg-cross/cross-config.mipsel | # read in package-specific and global values. | . `dirname $ac_site_file`/cross-config.cache | # | # (32 bit) MIPS little endian specific configure variables | # | ac_cv_c_bigendian=no | ac_cv_c_char_unsigned=no | ac_cv_sizeof_long=4 | ac_cv_sizeof_int=4 | ac_cv_sizeof_char_p=4 | ac_cv_sizeof_long_long=8 | ac_cv_sizeof_unsigned_long=4 | ac_cv_sizeof_unsigned_int=4 | | path=`dirname $ac_site_file` | # now allow package-specific architecture-independent values to be set | if [ -d $path/cross-config.d/mipsel/ ]; then | for file in `ls $path/cross-config.d/mipsel/`; do | if [ "$file" = "$PACKAGE" -o "$file" = "$PACKAGE_NAME" ]; then | [ -d $path/cross-config.d/mipsel/$file ] || . $path/cross-config.d/mipsel/$file | HAVE_PKG_CACHE=1 | fi | done | fi | | if [ -z "$HAVE_PKG_CACHE" ]; then | # orbit2 - only needed until liborbit-dev provides these directly | # using the mechanism above. | if [ "$PACKAGE" = "orbit2" -o "$PACKAGE_NAME" = "ORBit2" ]; then | ac_cv_alignof_CORBA_octet=1 | ac_cv_alignof_CORBA_boolean=1 | ac_cv_alignof_CORBA_char=1 | ac_cv_alignof_CORBA_wchar=2 | ac_cv_alignof_CORBA_short=2 | ac_cv_alignof_CORBA_long=4 | ac_cv_alignof_CORBA_long_long=8 | ac_cv_alignof_CORBA_float=4 | ac_cv_alignof_CORBA_double=8 | ac_cv_alignof_CORBA_long_double=8 | ac_cv_alignof_CORBA_struct=1 | ac_cv_alignof_CORBA_pointer=4 | fi | fi configure:2163: checking for mipsel-linux-gnu-gcc configure:2179: found /usr/bin/mipsel-linux-gnu-gcc configure:2190: result: mipsel-linux-gnu-gcc configure:2459: checking for C compiler version configure:2468: mipsel-linux-gnu-gcc --version >&5 mipsel-linux-gnu-gcc (Debian 9.2.1-24) 9.2.1 20200117 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2479: $? = 0 configure:2468: mipsel-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/mipsel-linux-gnu/9/lto-wrapper Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 9.2.1-24' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --without-target-system-zlib --enable-libpth-m2 --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include --with-build-config=bootstrap-lto-lean --enable-link-mutex Thread model: posix gcc version 9.2.1 20200117 (Debian 9.2.1-24) configure:2479: $? = 0 configure:2468: mipsel-linux-gnu-gcc -V >&5 mipsel-linux-gnu-gcc: error: unrecognized command line option '-V' mipsel-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:2479: $? = 1 configure:2468: mipsel-linux-gnu-gcc -qversion >&5 mipsel-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? mipsel-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:2479: $? = 1 configure:2499: checking whether the C compiler works configure:2521: mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden conftest.c >&5 configure:2525: $? = 0 configure:2573: result: yes configure:2576: checking for C compiler default output file name configure:2578: result: a.out configure:2584: checking for suffix of executables configure:2591: mipsel-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden conftest.c >&5 configure:2595: $? = 0 configure:2617: result: configure:2639: checking whether we are cross compiling configure:2677: result: yes configure:2682: checking for suffix of object files configure:2704: mipsel-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2708: $? = 0 configure:2729: result: o configure:2733: checking whether we are using the GNU C compiler configure:2752: mipsel-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2752: $? = 0 configure:2761: result: yes configure:2770: checking whether mipsel-linux-gnu-gcc accepts -g configure:2790: mipsel-linux-gnu-gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2790: $? = 0 configure:2831: result: yes configure:2848: checking for mipsel-linux-gnu-gcc option to accept ISO C89 configure:2911: mipsel-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:2911: $? = 0 configure:2924: result: none needed configure:2947: checking for mipsel-linux-gnu-ranlib configure:2963: found /usr/bin/mipsel-linux-gnu-ranlib configure:2974: result: mipsel-linux-gnu-ranlib configure:3037: checking for grep that handles long lines and -e configure:3095: result: /bin/grep configure:3120: checking for C compiler warning flags configure:3233: result: -Wall configure:3331: checking for mipsel-linux-gnu-pkg-config configure:3364: result: no configure:3374: checking for pkg-config configure:3407: result: no configure:3471: checking for special C compiler options needed for large files configure:3516: result: no configure:3522: checking for _FILE_OFFSET_BITS value needed for large files configure:3547: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 conftest.c:14:41: warning: result of '-2147483648 << 31' requires 63 bits to represent, but 'long int' only has 32 bits [-Wshift-overflow=] 14 | #define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31)) | ^~ conftest.c:15:23: note: in expansion of macro 'LARGE_OFF_T' 15 | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | ^~~~~~~~~~~ conftest.c:14:73: warning: result of '-2147483648 << 31' requires 63 bits to represent, but 'long int' only has 32 bits [-Wshift-overflow=] 14 | #define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31)) | ^~ conftest.c:15:23: note: in expansion of macro 'LARGE_OFF_T' 15 | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | ^~~~~~~~~~~ conftest.c:14:41: warning: result of '-2147483648 << 31' requires 63 bits to represent, but 'long int' only has 32 bits [-Wshift-overflow=] 14 | #define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31)) | ^~ conftest.c:16:13: note: in expansion of macro 'LARGE_OFF_T' 16 | && LARGE_OFF_T % 2147483647 == 1) | ^~~~~~~~~~~ conftest.c:14:73: warning: result of '-2147483648 << 31' requires 63 bits to represent, but 'long int' only has 32 bits [-Wshift-overflow=] 14 | #define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31)) | ^~ conftest.c:16:13: note: in expansion of macro 'LARGE_OFF_T' 16 | && LARGE_OFF_T % 2147483647 == 1) | ^~~~~~~~~~~ conftest.c:15:7: error: variably modified 'off_t_is_large' at file scope 15 | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | ^~~~~~~~~~~~~~ configure:3547: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.10.2" | #define PACKAGE_STRING "HTSlib 1.10.2" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | /* end confdefs.h. */ | #include | /* Check that off_t can represent 2**63 - 1 correctly. | We can't simply define LARGE_OFF_T to be 9223372036854775807, | since some C++ compilers masquerading as C compilers | incorrectly reject 9223372036854775807. */ | #define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31)) | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | && LARGE_OFF_T % 2147483647 == 1) | ? 1 : -1]; | int | main () | { | | ; | return 0; | } configure:3571: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:3571: $? = 0 configure:3579: result: 64 configure:3745: checking shared library type for mipsel-linux-gnu configure:3773: result: plain .so configure:3783: checking whether the compiler accepts -fvisibility=hidden configure:3803: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:3803: $? = 0 configure:3816: result: yes configure:3870: checking how to run the C preprocessor configure:3901: mipsel-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:3901: $? = 0 configure:3915: mipsel-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:3915: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.10.2" | #define PACKAGE_STRING "HTSlib 1.10.2" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define _FILE_OFFSET_BITS 64 | /* end confdefs.h. */ | #include configure:3940: result: mipsel-linux-gnu-gcc -E configure:3960: mipsel-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:3960: $? = 0 configure:3974: mipsel-linux-gnu-gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:3974: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.10.2" | #define PACKAGE_STRING "HTSlib 1.10.2" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define _FILE_OFFSET_BITS 64 | /* end confdefs.h. */ | #include configure:4003: checking for egrep configure:4065: result: /bin/grep -E configure:4070: checking for ANSI C header files configure:4090: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4090: $? = 0 configure:4174: result: yes configure:4187: checking for sys/types.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for sys/stat.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for stdlib.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for string.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for memory.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for strings.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for inttypes.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for stdint.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4187: checking for unistd.h configure:4187: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4187: $? = 0 configure:4187: result: yes configure:4205: checking for stdlib.h configure:4205: result: yes configure:4205: checking for unistd.h configure:4205: result: yes configure:4205: checking for sys/param.h configure:4205: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4205: $? = 0 configure:4205: result: yes configure:4225: checking for getpagesize configure:4225: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:4225: $? = 0 configure:4225: result: yes configure:4234: checking for working mmap configure:4393: result: yes configure:4405: checking for gmtime_r configure:4405: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:4405: $? = 0 configure:4405: result: yes configure:4405: checking for fsync configure:4405: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:4405: $? = 0 configure:4405: result: yes configure:4405: checking for drand48 configure:4405: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:4405: $? = 0 configure:4405: result: yes configure:4417: checking whether fdatasync is declared configure:4417: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4417: $? = 0 configure:4417: result: yes configure:4421: checking for fdatasync configure:4421: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 configure:4421: $? = 0 configure:4421: result: yes configure:4556: checking for library containing log configure:4587: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c >&5 conftest.c:36:6: warning: conflicting types for built-in function 'log'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 36 | char log (); | ^~~ conftest.c:1:1: note: 'log' is declared in header '' 1 | /* confdefs.h */ /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /tmp/conftest.X368Nd.ltrans0.ltrans.o: in function `main': ./conftest.c:40: undefined reference to `log' /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: ./conftest.c:40: undefined reference to `log' collect2: error: ld returned 1 exit status configure:4587: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.10.2" | #define PACKAGE_STRING "HTSlib 1.10.2" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define _FILE_OFFSET_BITS 64 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_GMTIME_R 1 | #define HAVE_FSYNC 1 | #define HAVE_DRAND48 1 | #define HAVE_FDATASYNC 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char log (); | int | main () | { | return log (); | ; | return 0; | } configure:4587: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c -lm >&5 conftest.c:36:6: warning: conflicting types for built-in function 'log'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 36 | char log (); | ^~~ conftest.c:1:1: note: 'log' is declared in header '' 1 | /* confdefs.h */ configure:4587: $? = 0 configure:4604: result: -lm configure:4624: checking for zlib.h configure:4624: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4624: $? = 0 configure:4624: result: yes configure:4633: checking for inflate in -lz configure:4658: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c -lz -lm >&5 configure:4658: $? = 0 configure:4667: result: yes configure:4698: checking for library containing recv configure:4729: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c -lz -lm >&5 configure:4729: $? = 0 configure:4746: result: none required configure:4768: checking for bzlib.h configure:4768: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4768: $? = 0 configure:4768: result: yes configure:4777: checking for BZ2_bzBuffToBuffCompress in -lbz2 configure:4802: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c -lbz2 -lz -lm >&5 configure:4802: $? = 0 configure:4811: result: yes configure:4855: checking for lzma.h configure:4855: mipsel-linux-gnu-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:4855: $? = 0 configure:4855: result: yes configure:4868: checking for lzma_easy_buffer_encode in -llzma configure:4893: mipsel-linux-gnu-gcc -o conftest -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden conftest.c -llzma -lbz2 -lz -lm >&5 /usr/lib/gcc-cross/mipsel-linux-gnu/9/../../../../mipsel-linux-gnu/bin/ld: /lib/mipsel-linux-gnu/libpthread.so.0: undefined reference to `__twalk_r@GLIBC_PRIVATE' collect2: error: ld returned 1 exit status configure:4893: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HTSlib" | #define PACKAGE_TARNAME "htslib" | #define PACKAGE_VERSION "1.10.2" | #define PACKAGE_STRING "HTSlib 1.10.2" | #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" | #define PACKAGE_URL "http://www.htslib.org/" | #define _FILE_OFFSET_BITS 64 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_GMTIME_R 1 | #define HAVE_FSYNC 1 | #define HAVE_DRAND48 1 | #define HAVE_FDATASYNC 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBBZ2 1 | #define HAVE_LZMA_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char lzma_easy_buffer_encode (); | int | main () | { | return lzma_easy_buffer_encode (); | ; | return 0; | } configure:4902: result: no configure:4921: error: liblzma development files not found The CRAM format may use LZMA2 compression, which is implemented in HTSlib by using compression routines from liblzma . Building HTSlib requires liblzma development files to be installed on the build machine; you may need to ensure a package such as liblzma-dev (on Debian or Ubuntu Linux), xz-devel (on RPM-based Linux distributions or Cygwin), or xz (via Homebrew on macOS) is installed; or build XZ Utils from source. Either configure with --disable-lzma (which will make some CRAM files produced elsewhere unreadable) or resolve this error to build HTSlib. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_bigendian=no ac_cv_c_char_unsigned=no ac_cv_c_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=mipsel-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_drand48=yes ac_cv_func_fdatasync=yes ac_cv_func_fsync=yes ac_cv_func_getpagesize=yes ac_cv_func_gmtime_r=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_have_decl_fdatasync_int_=yes ac_cv_header_bzlib_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_lzma_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_lib_bz2_BZ2_bzBuffToBuffCompress=yes ac_cv_lib_lzma_lzma_easy_buffer_encode=no ac_cv_lib_z_inflate=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_prog_CC=mipsel-linux-gnu-gcc ac_cv_prog_CPP='mipsel-linux-gnu-gcc -E' ac_cv_prog_RANLIB=mipsel-linux-gnu-ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_search_log=-lm ac_cv_search_recv='none required' ac_cv_sizeof_char_p=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=4 ac_cv_sizeof_long_long=8 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=4 ac_cv_sys_file_offset_bits=64 ac_cv_sys_largefile_CC=no hts_cv_check__fvisibility_hidden=yes hts_cv_prog_cc_warnings=-Wall lt_cv_sys_lib_dlsearch_path_spec=' /lib/mipsel-linux-gnu /usr/lib/mipsel-linux-gnu /lib /usr/lib /usr/local/lib' ## ----------------- ## ## Output variables. ## ## ----------------- ## CC='mipsel-linux-gnu-gcc' CFLAGS=' -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -fvisibility=hidden' CPP='mipsel-linux-gnu-gcc -E' CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' CRYPTO_LIBS='' DEFS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' GREP='/bin/grep' LDFLAGS='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -fvisibility=hidden' LIBOBJS='' LIBS='-lbz2 -lz -lm ' LTLIBOBJS='' OBJEXT='o' PACKAGE_BUGREPORT='samtools-help@lists.sourceforge.net' PACKAGE_NAME='HTSlib' PACKAGE_STRING='HTSlib 1.10.2' PACKAGE_TARNAME='htslib' PACKAGE_URL='http://www.htslib.org/' PACKAGE_VERSION='1.10.2' PATH_SEPARATOR=':' PKG_CONFIG='' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' PLATFORM='default' PLUGIN_EXT='.so' RANLIB='mipsel-linux-gnu-ranlib' SHELL='/bin/bash' ac_ct_CC='' bindir='${exec_prefix}/bin' build_alias='x86_64-linux-gnu' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_plugins='no' exec_prefix='NONE' gcs='' host_alias='mipsel-linux-gnu' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' libcurl='' libdir='${prefix}/lib/mipsel-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' oldincludedir='/usr/include' pc_requires='' pdfdir='${docdir}' plugindir='$(libexecdir)/htslib' pluginpath='$(libexecdir)/htslib' prefix='/usr' private_LIBS='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -lbz2' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' s3='' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' static_LDFLAGS='-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden' static_LIBS='-lpthread -lz -lm -lbz2' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HTSlib" #define PACKAGE_TARNAME "htslib" #define PACKAGE_VERSION "1.10.2" #define PACKAGE_STRING "HTSlib 1.10.2" #define PACKAGE_BUGREPORT "samtools-help@lists.sourceforge.net" #define PACKAGE_URL "http://www.htslib.org/" #define _FILE_OFFSET_BITS 64 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_GMTIME_R 1 #define HAVE_FSYNC 1 #define HAVE_DRAND48 1 #define HAVE_FDATASYNC 1 #define HAVE_LIBZ 1 #define HAVE_LIBBZ2 1 #define HAVE_LZMA_H 1 configure: exit 1 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --enable-libcurl --enable-gcs --enable-s3 returned exit code 1 make[1]: *** [debian/rules:28: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:18: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-03-20T10:14:38Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 15004 Build-Time: 10 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 18 Job: htslib_1.10.2-3 Machine Architecture: amd64 Package: htslib Package-Time: 41 Source-Version: 1.10.2-3 Space: 15004 Status: attempted Version: 1.10.2-3 -------------------------------------------------------------------------------- Finished at 2020-03-20T10:14:38Z Build needed 00:00:41, 15004k disk space