sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.10.2-3 (s390x) Fri, 14 Feb 2020 18:26:58 +0000 | +==============================================================================+ Package: htslib Version: 1.10.2-3 Source Version: 1.10.2-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-08323def-2d6c-42da-94e5-2e2a2571a696' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-3d3xH2/resolver-ieSVXX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [142 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-14-0811.25.pdiff [4596 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-14-1434.18.pdiff [8429 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-02-14-1434.18.pdiff [8429 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-14-0811.25.pdiff [5604 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-14-1434.18.pdiff [4710 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-02-14-1434.18.pdiff [4710 B] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7932 kB] Fetched 8154 kB in 2s (4247 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1325 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (dsc) [2312 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (tar) [1306 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.10.2-3 (diff) [16.9 kB] Fetched 1325 kB in 0s (5894 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-3d3xH2/htslib-1.10.2' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-3d3xH2' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [446 B] Get:5 copy:/<>/apt_archive ./ Packages [534 B] Fetched 1937 B in 0s (93.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbsd0 libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed5:s390x libicu63 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x libldap-common liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle7:s390x libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl-dev:s390x libssl1.1:s390x libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-s390x-linux-gnu gcc-9-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn11-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x pkg-config:s390x rng-tools:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libssl-doc:s390x libstdc++-9-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:s390x ca-certificates:s390x libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:s390x krb5-locales:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdmainutils build-essential cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-9-base:s390x gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbsd0 libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:s390x libgcc-9-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed5:s390x libicu63 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x libldap-common liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle7:s390x libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl-dev:s390x libssl1.1:s390x libstdc++-9-dev libstdc++-9-dev:s390x libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 84.8 MB of archives. After this operation, 341 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10-20200211-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.2.1-28 [195 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.34-2 [1944 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.10-10 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-28 [1697 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-28 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.2.1-28cross1 [196 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.2.1-28cross1 [6140 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-28cross1 [191 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200211-1cross1 [191 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.29-9cross1 [1246 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10-20200211-1cross1 [24.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10-20200211-1cross1 [90.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10-20200211-1cross1 [25.1 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10-20200211-1cross1 [7984 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.2.1-28cross1 [338 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10-20200211-1cross1 [444 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10-20200211-1cross1 [125 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.2.1-28cross1 [683 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.2.1-28cross1 [6513 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3.1 [1456 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.4.8-1cross1 [1145 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.29-9cross1 [2209 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.2.1-28cross1 [1648 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.2.1-28cross1 [6722 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3.1 [1176 B] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-8 [710 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-12 [547 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.2 [26.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10-20200211-1 [24.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.10-10 [88.1 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.29-10 [2442 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.2.1-28 [344 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10-20200211-1 [8216 B] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libbrotli1 s390x 1.0.7-6 [259 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-2 [45.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.4.19-1 [1073 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.10-10 [107 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.29-10 [2236 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-dev s390x 1.0.8-2 [30.2 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.5-2 [71.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.2.0+dfsg-3 [238 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [233 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-2 [367 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.2.0-2 [81.4 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libffi7 s390x 3.3-3 [19.9 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.20-1 [320 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.15.0-2 [51.7 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.11.1-2 [1066 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.17-6 [63.7 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.17-6 [114 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1d-2 [1198 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.17-6 [345 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.17-6 [144 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6 [612 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2 [68.1 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-2 [103 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.49+dfsg-1 [216 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.40.0-1 [80.2 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.20.2-2 [53.5 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1.2 [88.8 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b1 [56.5 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x libgpg-error0 s390x 1.37-1 [67.8 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x libgcrypt20 s390x 1.8.5-3 [486 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.8.0-2.1 [132 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.67.0-2 [298 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libcurl4-gnutls-dev s390x 7.67.0-2 [390 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.5-3 [51.5 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate-dev s390x 1.5-3 [41.4 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10-20200211-1 [92.2 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10-20200211-1 [25.4 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10-20200211-1 [484 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10-20200211-1 [126 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.2.1-28 [682 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.4-1+b1 [151 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.4-1+b1 [210 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libssl-dev s390x 1.1.1d-2 [1461 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.2.1-28 [1659 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1.2 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.8 MB in 1s (61.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12784 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:s390x. Preparing to unpack .../007-gcc-10-base_10-20200211-1_s390x.deb ... Unpacking gcc-10-base:s390x (10-20200211-1) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../008-gcc-9-base_9.2.1-28_s390x.deb ... Unpacking gcc-9-base:s390x (9.2.1-28) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../011-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../024-libstdc++-9-dev_9.2.1-28_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.2.1-28) ... Selecting previously unselected package g++-9. Preparing to unpack .../025-g++-9_9.2.1-28_amd64.deb ... Unpacking g++-9 (9.2.1-28) ... Selecting previously unselected package g++. Preparing to unpack .../026-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../027-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-s390x-linux-gnu-base:amd64. Preparing to unpack .../028-gcc-9-s390x-linux-gnu-base_9.2.1-28cross1_amd64.deb ... Unpacking gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-28cross1) ... Selecting previously unselected package cpp-9-s390x-linux-gnu. Preparing to unpack .../029-cpp-9-s390x-linux-gnu_9.2.1-28cross1_amd64.deb ... Unpacking cpp-9-s390x-linux-gnu (9.2.1-28cross1) ... 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Preparing to unpack .../035-libgcc-s1-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libgcc-s1-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../036-libgomp1-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libgomp1-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../037-libitm1-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libitm1-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libatomic1-s390x-cross. Preparing to unpack .../038-libatomic1-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libatomic1-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libasan5-s390x-cross. Preparing to unpack .../039-libasan5-s390x-cross_9.2.1-28cross1_all.deb ... Unpacking libasan5-s390x-cross (9.2.1-28cross1) ... Selecting previously unselected package libstdc++6-s390x-cross. Preparing to unpack .../040-libstdc++6-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libstdc++6-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libubsan1-s390x-cross. Preparing to unpack .../041-libubsan1-s390x-cross_10-20200211-1cross1_all.deb ... Unpacking libubsan1-s390x-cross (10-20200211-1cross1) ... Selecting previously unselected package libgcc-9-dev-s390x-cross. Preparing to unpack .../042-libgcc-9-dev-s390x-cross_9.2.1-28cross1_all.deb ... Unpacking libgcc-9-dev-s390x-cross (9.2.1-28cross1) ... Selecting previously unselected package gcc-9-s390x-linux-gnu. Preparing to unpack .../043-gcc-9-s390x-linux-gnu_9.2.1-28cross1_amd64.deb ... Unpacking gcc-9-s390x-linux-gnu (9.2.1-28cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../044-gcc-s390x-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../045-linux-libc-dev-s390x-cross_5.4.8-1cross1_all.deb ... Unpacking linux-libc-dev-s390x-cross (5.4.8-1cross1) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../046-libc6-dev-s390x-cross_2.29-9cross1_all.deb ... Unpacking libc6-dev-s390x-cross (2.29-9cross1) ... Selecting previously unselected package libstdc++-9-dev-s390x-cross. Preparing to unpack .../047-libstdc++-9-dev-s390x-cross_9.2.1-28cross1_all.deb ... Unpacking libstdc++-9-dev-s390x-cross (9.2.1-28cross1) ... Selecting previously unselected package g++-9-s390x-linux-gnu. Preparing to unpack .../048-g++-9-s390x-linux-gnu_9.2.1-28cross1_amd64.deb ... Unpacking g++-9-s390x-linux-gnu (9.2.1-28cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../049-g++-s390x-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../050-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../051-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../052-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../053-libxml2_2.9.4+dfsg1-8_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-8) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../054-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../055-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../056-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../057-libxml-libxml-perl_2.0134+dfsg-1+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../058-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../059-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../060-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../061-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../062-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../063-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../064-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../065-crossbuild-essential-s390x_12.8_all.deb ... Unpacking crossbuild-essential-s390x (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../066-libtool_2.4.6-12_all.deb ... Unpacking libtool (2.4.6-12) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../067-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../068-libdebhelper-perl_12.9_all.deb ... Unpacking libdebhelper-perl (12.9) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../069-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../070-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../071-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../072-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../073-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../074-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../075-libglib2.0-0_2.62.4-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.62.4-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../076-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../077-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../078-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../079-po-debconf_1.0.21_all.deb ... 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Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.9) ... Setting up libc6-s390x-cross (2.29-9cross1) ... Setting up gcc-9-s390x-linux-gnu-base:amd64 (9.2.1-28cross1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:s390x (5.4.19-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:s390x (10-20200211-1) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.4.8-1cross1) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-9-s390x-linux-gnu (9.2.1-28cross1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.2.1-28cross1) ... Setting up gcc-10-cross-base (10-20200211-1cross1) ... Setting up libitm1-s390x-cross (10-20200211-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.29-9cross1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libgomp1-s390x-cross (10-20200211-1cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-8) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:s390x (9.2.1-28) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-28) ... Setting up cpp-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up libtool (2.4.6-12) ... Setting up libatomic1-s390x-cross (10-20200211-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10-20200211-1cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-28) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-s390x-cross (10-20200211-1cross1) ... Setting up libasan5-s390x-cross (9.2.1-28cross1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libubsan1-s390x-cross (10-20200211-1cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libgcc-9-dev-s390x-cross (9.2.1-28cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libstdc++-9-dev-s390x-cross (9.2.1-28cross1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up gcc-9-s390x-linux-gnu (9.2.1-28cross1) ... Setting up gcc-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up g++-9-s390x-linux-gnu (9.2.1-28cross1) ... Setting up g++-s390x-linux-gnu (4:9.2.1-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.10-10) ... Setting up libgcc-s1:s390x (10-20200211-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.29-10) ... Setting up libnettle7:s390x (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:s390x (1:4.4.10-10) ... Setting up libtasn1-6:s390x (4.15.0-2) ... Setting up libc6-dev:s390x (2.29-10) ... Setting up libbz2-1.0:s390x (1.0.8-2) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:s390x (10-20200211-1) ... Setting up libitm1:s390x (10-20200211-1) ... Setting up libbz2-dev:s390x (1.0.8-2) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up liblzma5:s390x (5.2.4-1+b1) ... Setting up libgpg-error0:s390x (1.37-1) ... Setting up libssl1.1:s390x (1.1.1d-2) ... Setting up libbrotli1:s390x (1.0.7-6) ... Setting up libffi7:s390x (3.3-3) ... Setting up libnghttp2-14:s390x (1.40.0-1) ... Setting up libunistring2:s390x (0.9.10-2) ... Setting up libdeflate0:s390x (1.5-3) ... Setting up libgcrypt20:s390x (1.8.5-3) ... Setting up debhelper (12.9) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1.2) ... Setting up dh-exec (0.23.2) ... Setting up libidn2-0:s390x (2.2.0-2) ... Setting up libcom-err2:s390x (1.45.5-2) ... Setting up libgomp1:s390x (10-20200211-1) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2) ... Setting up libasan5:s390x (9.2.1-28) ... Setting up libgmp10:s390x (2:6.2.0+dfsg-3) ... Setting up libp11-kit0:s390x (0.23.20-1) ... Setting up libssl-dev:s390x (1.1.1d-2) ... Setting up libatomic1:s390x (10-20200211-1) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2) ... Setting up liblzma-dev:s390x (5.2.4-1+b1) ... Setting up libubsan1:s390x (10-20200211-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1.2) ... Setting up libssh2-1:s390x (1.8.0-2.1) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libdeflate-dev:s390x (1.5-3) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libhogweed5:s390x (3.5.1+really3.5.1-2) ... Setting up libgcc-9-dev:s390x (9.2.1-28) ... Setting up libgnutls30:s390x (3.6.11.1-2) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libstdc++-9-dev:s390x (9.2.1-28) ... Setting up libldap-2.4-2:s390x (2.4.49+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.67.0-2) ... Setting up libcurl4-gnutls-dev:s390x (7.67.0-2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.34-2 dpkg-dev_1.19.7 g++-9_9.2.1-28 gcc-8_8.3.0-28 gcc-9_9.2.1-28 libc6-dev_2.29-10 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-s390x-cross_9.2.1-28cross1 libstdc++6_10-20200211-1 libstdc++6-s390x-cross_10-20200211-1cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-2 binutils-common_2.34-2 binutils-s390x-linux-gnu_2.34-2 binutils-x86-64-linux-gnu_2.34-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-28 cpp-9_9.2.1-28 cpp-9-s390x-linux-gnu_9.2.1-28cross1 cpp-s390x-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-28 g++-9-s390x-linux-gnu_9.2.1-28cross1 g++-s390x-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200211-1 gcc-10-cross-base_10-20200211-1cross1 gcc-8_8.3.0-28 gcc-8-base_8.3.0-28 gcc-9_9.2.1-28 gcc-9-base_9.2.1-28 gcc-9-cross-base_9.2.1-28cross1 gcc-9-s390x-linux-gnu_9.2.1-28cross1 gcc-9-s390x-linux-gnu-base_9.2.1-28cross1 gcc-s390x-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-28 libasan5-s390x-cross_9.2.1-28cross1 libatomic1_10-20200211-1 libatomic1-s390x-cross_10-20200211-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-2 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-dev-s390x-cross_2.29-9cross1 libc6-s390x-cross_2.29-9cross1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200211-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-2 libctf0_2.34-2 libcurl3-gnutls_7.67.0-2 libcurl4-gnutls-dev_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdeflate-dev_1.5-3 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-28 libgcc-9-dev_9.2.1-28 libgcc-9-dev-s390x-cross_9.2.1-28cross1 libgcc-s1_10-20200211-1 libgcc-s1-s390x-cross_10-20200211-1cross1 libgcc1_1:10-20200211-1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2 libgomp1_10-20200211-1 libgomp1-s390x-cross_10-20200211-1cross1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22-2 libitm1_10-20200211-1 libitm1-s390x-cross_10-20200211-1cross1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-1 libldap-common_2.4.49+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200211-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-28 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libquadmath0_10-20200211-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1d-2 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-28 libstdc++-9-dev-s390x-cross_9.2.1-28cross1 libstdc++6_10-20200211-1 libstdc++6-s390x-cross_10-20200211-1cross1 libsub-override-perl_0.09-2 libsystemd0_244.2-1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-12 libtsan0_10-20200211-1 libubsan1_10-20200211-1 libubsan1-s390x-cross_10-20200211-1cross1 libuchardet0_0.0.6-3 libudev1_244.2-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-8 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 linux-libc-dev-s390x-cross_5.4.8-1cross1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.10.2-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe Homepage: https://github.com/samtools/htslib Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 12), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: f137100d2b3fbd214791accee43f49cb95965f1a 1306320 htslib_1.10.2.orig.tar.bz2 92a483283159faf0efe7854237b9c14b9f71f551 16852 htslib_1.10.2-3.debian.tar.xz Checksums-Sha256: e3b543de2f71723830a1e0472cf5489ec27d0fbeb46b1103e14a11b7177d1939 1306320 htslib_1.10.2.orig.tar.bz2 a2396dbd49a516a7c54e8bd9d5913c50a2b038f23ea7f6a91225d7a953d57e2a 16852 htslib_1.10.2-3.debian.tar.xz Files: 9b03764c4809388625ab0b6352b13c93 1306320 htslib_1.10.2.orig.tar.bz2 56ca02acff010375c0094e9bc88152d6 16852 htslib_1.10.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl5FqpQACgkQPCZ2P2xn 5uJkzhAAlbgk54kkBpqKnfnHCZMrlMv+K+/PBmcZz0JGuBZjhUGEIndi4Z0OhSV2 0pkrZYFxEiV6gCkGsUCqt+mr4tjrTLD4TLCV9Yf4eUFQN+jaJpft4NoomXFnPNS1 eYkPENrg5CLMZmlt7dVkUzpZVkIsTjYyGIfbQScqxqpndUd438rJOBn5V8ieSclD YaRKvDrUsJoinNQoZDyPWMdGwA/jGZijbgh0IruTN6yPtaWweVP1Hy6JQKLI/R86 fc/vSAcnEUr3I4sUJ15V5bniihknlVMp2/BDXbOJptuyQs+A4i7ckieidnt4tLM6 6KEbQq+hAvmes71OauPswEH9ylFMM+DUGr8zZ7ZFBZHNiQSddUiNTUfRWqN8FsZh f+g/0gR6C2P9Ra+V0D22d4i6RoimNDLTwCi+cI6XuhLRpNI/57bHDCPH8g6ddmbL QNEwz5u0Sh0z3UM0zdxVmUtVp41qVDPrLFxy7fw1PvOw4S7ep2SMuBm0wpHFOXWf knOG6Iht99rBRUQRq07WDVFEICVnNJHUA0HdNNyq+ukJ+ZWpB51ZJTey94e9s/dG kyIa4KFkF+VRHf1XzdJSrOUzDL3eaKbv67SRo9YPykUF1EfU009PcNv5XmObl0Ou hHc8NpvoSVI1ERkt5qFaHsKlYov39X7CluWtYm6T0DeHJ+q5Dtw= =5gAV -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Feb 13 19:59:16 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.10.2-3.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.10.2.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.10.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying big-endian Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-08323def-2d6c-42da-94e5-2e2a2571a696 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.10.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from htslib-1.10.2/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f hts-object-files rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/sam test/test_bgzf test/test_kstring test/test_realn test/test-regidx test/test_str2int test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-libcurl --enable-gcs --enable-s3 configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for s390x-linux-gnu-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for s390x-linux-gnu... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.10.2-3" \ libdir=/usr/lib/s390x-linux-gnu make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.10.2-3 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION_TEXT "1.10.2-3"' > version.h s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_libcurl.o hfile_libcurl.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_gcs.o hfile_gcs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_s3.o hfile_s3.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_s3_write.o hfile_s3_write.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o hfile_s3_write.o s390x-linux-gnu-ranlib libhts.a s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o knetfile.pico knetfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_net.pico hfile_net.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_samtools.pico cram/cram_samtools.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/rANS_static.pico cram/rANS_static.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c s390x-linux-gnu-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/string_alloc.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico hfile_s3_write.pico -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ln -sf libhts.so libhts.so.3 s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o htsfile htsfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o tabix tabix.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hts_endian test/hts_endian.o -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hfile test/hfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/pileup test/pileup.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/sam test/sam.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_realn test/test_realn.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_str2int test/test_str2int.o s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_view test/test_view.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_index test/test_index.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.10.2-3" \ libdir=/usr/lib/s390x-linux-gnu install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.10.2-3 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/s390x-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig if test -n ""; then mkdir -p -m 755 /<>/debian/tmp; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 ln -sf libhts.so.1.10.2-3 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so ln -sf libhts.so.1.10.2-3 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/s390x-linux-gnu#g;s#@-PACKAGE_VERSION@#1.10.2-3#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n ""; then install -p /<>/debian/tmp; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts3/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 debian/libhts3/usr/lib/s390x-linux-gnu/ install -d debian/.debhelper/generated/libhts3 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libhts.a debian/tmp/usr/lib/s390x-linux-gnu/libhts.so debian/libhts-dev/usr/lib/s390x-linux-gnu/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chown -R 0:0 debian/libhts-dev/usr/share/doc chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts-dev/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/vcf.5 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new debian/libhts-dev/usr/share/man/man5/faidx.5 mv debian/libhts-dev/usr/share/man/man5/sam.5.dh-new debian/libhts-dev/usr/share/man/man5/sam.5 mv debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new debian/libhts-dev/usr/share/man/man5/vcf.5 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts-dev/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/vcf.5 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 ln -s libhts.so.1.10.2-3 debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 rm -f debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so ln -s libhts.so.1.10.2-3 debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_missing: warning: usr/share/man/man7/htslib-s3-plugin.7 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/man/man1/tabix.1 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/man/man1/htsfile.1 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/man/man1/bgzip.1 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/tabix exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/htsfile exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/bgzip exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: htslib-test (219), libhts-dev (7), libhts3 (2), tabix (3) * dh_installdocs: htslib-test (0), libhts-dev (3), libhts3 (0), tabix (0) * dh_installman: htslib-test (0), libhts-dev (0), libhts3 (0), tabix (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -a dwz -- debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 install -d debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug dh_strip -a install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3f s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3f/3775ec4c09d0747f6e7d9d4b5b30f962313fe2.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3f/3775ec4c09d0747f6e7d9d4b5b30f962313fe2.debug chown 0:0 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3f/3775ec4c09d0747f6e7d9d4b5b30f962313fe2.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3f/3775ec4c09d0747f6e7d9d4b5b30f962313fe2.debug debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym s390x-linux-gnu-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.a s390x-linux-gnu-strip: debian/libhts-dev/usr/lib/s390x-linux-gnu/stOIhDal/kfunc.o: plugin needed to handle lto object install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ba s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ba/ea1d04d63128aeaa4589329255698b1ac076b6.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ba/ea1d04d63128aeaa4589329255698b1ac076b6.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ba/ea1d04d63128aeaa4589329255698b1ac076b6.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ba/ea1d04d63128aeaa4589329255698b1ac076b6.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b7 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b7/7a9bb090ace64ee968fa5b6df033f146bb4c4c.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b7/7a9bb090ace64ee968fa5b6df033f146bb4c4c.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b7/7a9bb090ace64ee968fa5b6df033f146bb4c4c.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b7/7a9bb090ace64ee968fa5b6df033f146bb4c4c.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ea s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ea/3369d54e243c9cb5bb545f085951e7bd06115a.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ea/3369d54e243c9cb5bb545f085951e7bd06115a.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ea/3369d54e243c9cb5bb545f085951e7bd06115a.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ea/3369d54e243c9cb5bb545f085951e7bd06115a.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym dh_makeshlibs -a rm -f debian/libhts3/DEBIAN/shlibs install -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.10.2)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs chown 0:0 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" -DBuild-Ids=3f3775ec4c09d0747f6e7d9d4b5b30f962313fe2 -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control chown 0:0 -- debian/libhts3/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control chown 0:0 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=b77a9bb090ace64ee968fa5b6df033f146bb4c4c baea1d04d63128aeaa4589329255698b1ac076b6 ea3369d54e243c9cb5bb545f085951e7bd06115a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control chown 0:0 -- debian/tabix/DEBIAN/control dh_md5sums -a cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums chown 0:0 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums chown 0:0 -- debian/libhts-dev/DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums chown 0:0 -- debian/tabix/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.10.2-3_s390x.deb'. dpkg-deb --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.10.2-3_s390x.deb'. dpkg-deb --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.10.2-3_s390x.deb'. dpkg-deb --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.10.2-3_s390x.deb'. dpkg-deb --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.10.2-3_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../htslib_1.10.2-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.10.2/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-02-14T18:34:11Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.10.2-3_s390x.changes: ------------------------------ Format: 1.8 Date: Thu, 13 Feb 2020 19:25:04 +0100 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.10.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 947462 Changes: htslib (1.10.2-3) unstable; urgency=medium . [ Andreas Tille ] * d/copyright: Add Upstream-Contact . [ Michael R. Crusoe ] * Patch from upstream for big-endian systems. Closes: #947462 * Mark htslib-tests as Multi-Arch: foreign * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Submit. * add Build-Depends-Package: libhts-dev to debian/libhts3.symbols * debian/rules: add hack to autoconf not forget MMAP with cross building * pass the same flags to test and install as build * debian/rules: match upstream's default flags * debian/libhts3.symbols: remove erronously exported symbols Checksums-Sha1: dc38726295eff4f71654b4e0af8c24d37396e1b7 6529 htslib_1.10.2-3_s390x.buildinfo 30bc0437ef9fecdc186a1399b8151b7e37ca27cb 4856932 libhts-dev_1.10.2-3_s390x.deb 492c1413731164ca4a75143749f30d268e892dc8 1163844 libhts3-dbgsym_1.10.2-3_s390x.deb 1d919f6f0e1d3ae809139be4d0db822a814f9404 339956 libhts3_1.10.2-3_s390x.deb 16f3be5a1ab0fdc855a4482bbff7ba7aac301131 1761104 tabix-dbgsym_1.10.2-3_s390x.deb 9f457cde0c760223ec4a3796dda61ba4a0e29231 345208 tabix_1.10.2-3_s390x.deb Checksums-Sha256: a173fd2f409cea1f461e2f1cbd6469f1028ffafccd50f7b51932a48c322766a4 6529 htslib_1.10.2-3_s390x.buildinfo c4ccb23f142e270530e7a0f7a8213b19796769928de1ade45f5eff5eb245b8cf 4856932 libhts-dev_1.10.2-3_s390x.deb 6f634389ba2c37370e648554971a99c933ff64a309bc33d5aeee84b9e0f82558 1163844 libhts3-dbgsym_1.10.2-3_s390x.deb c7ddc5b869ae783853505e89e9743c4885b85b9cb3195438de39092c95dbf36d 339956 libhts3_1.10.2-3_s390x.deb 160dd6af09beeef9c43ba32b34cd82628344c3c9afd379685828bd1810c503ad 1761104 tabix-dbgsym_1.10.2-3_s390x.deb 6afd07d854be14dd1aef664f69a022e88fd42e3f918e6ae87d72d4f5614fce86 345208 tabix_1.10.2-3_s390x.deb Files: 20c0330e0588290a6517b76189664964 6529 science optional htslib_1.10.2-3_s390x.buildinfo 469e2ff70ae1dc86281c24f3bc5ae473 4856932 libdevel optional libhts-dev_1.10.2-3_s390x.deb b7e85f0f3f65b84ad7fd3d2fbd62e284 1163844 debug optional libhts3-dbgsym_1.10.2-3_s390x.deb e9ba7de38f62fcf0cece0074963b6303 339956 libs optional libhts3_1.10.2-3_s390x.deb 30aeeee700c7d0af0109fea0b7133fa5 1761104 debug optional tabix-dbgsym_1.10.2-3_s390x.deb 4c7d491bcd8364e8c95cafcfa2935998 345208 science optional tabix_1.10.2-3_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts3 libhts-dev htslib-test tabix Architecture: s390x Version: 1.10.2-3 Checksums-Md5: 469e2ff70ae1dc86281c24f3bc5ae473 4856932 libhts-dev_1.10.2-3_s390x.deb b7e85f0f3f65b84ad7fd3d2fbd62e284 1163844 libhts3-dbgsym_1.10.2-3_s390x.deb e9ba7de38f62fcf0cece0074963b6303 339956 libhts3_1.10.2-3_s390x.deb 30aeeee700c7d0af0109fea0b7133fa5 1761104 tabix-dbgsym_1.10.2-3_s390x.deb 4c7d491bcd8364e8c95cafcfa2935998 345208 tabix_1.10.2-3_s390x.deb Checksums-Sha1: 30bc0437ef9fecdc186a1399b8151b7e37ca27cb 4856932 libhts-dev_1.10.2-3_s390x.deb 492c1413731164ca4a75143749f30d268e892dc8 1163844 libhts3-dbgsym_1.10.2-3_s390x.deb 1d919f6f0e1d3ae809139be4d0db822a814f9404 339956 libhts3_1.10.2-3_s390x.deb 16f3be5a1ab0fdc855a4482bbff7ba7aac301131 1761104 tabix-dbgsym_1.10.2-3_s390x.deb 9f457cde0c760223ec4a3796dda61ba4a0e29231 345208 tabix_1.10.2-3_s390x.deb Checksums-Sha256: c4ccb23f142e270530e7a0f7a8213b19796769928de1ade45f5eff5eb245b8cf 4856932 libhts-dev_1.10.2-3_s390x.deb 6f634389ba2c37370e648554971a99c933ff64a309bc33d5aeee84b9e0f82558 1163844 libhts3-dbgsym_1.10.2-3_s390x.deb c7ddc5b869ae783853505e89e9743c4885b85b9cb3195438de39092c95dbf36d 339956 libhts3_1.10.2-3_s390x.deb 160dd6af09beeef9c43ba32b34cd82628344c3c9afd379685828bd1810c503ad 1761104 tabix-dbgsym_1.10.2-3_s390x.deb 6afd07d854be14dd1aef664f69a022e88fd42e3f918e6ae87d72d4f5614fce86 345208 tabix_1.10.2-3_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 14 Feb 2020 18:34:10 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-5), binutils (= 2.34-2), binutils-common (= 2.34-2), binutils-x86-64-linux-gnu (= 2.34-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-28), cpp-9 (= 9.2.1-28), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-exec (= 0.23.2), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-28), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200211-1), gcc-8 (= 8.3.0-28), gcc-8-base (= 8.3.0-28), gcc-9 (= 9.2.1-28), gcc-9-base (= 9.2.1-28), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.9-3+b1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-28), libatomic1 (= 10-20200211-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-2), libblkid1 (= 2.34-0.1), libbrotli1 (= 1.0.7-6), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libbz2-dev (= 1.0.8-2), libc-bin (= 2.29-10), libc-dev-bin (= 2.29-10), libc6 (= 2.29-10), libc6-dev (= 2.29-10), libcap-ng0 (= 0.7.9-2.1+b1), libcc1-0 (= 10-20200211-1), libcom-err2 (= 1.45.5-2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10), libcrypt1 (= 1:4.4.10-10), libctf-nobfd0 (= 2.34-2), libctf0 (= 2.34-2), libcurl3-gnutls (= 7.67.0-2), libcurl4-gnutls-dev (= 7.67.0-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdeflate-dev (= 1.5-3), libdeflate0 (= 1.5-3), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-8-dev (= 8.3.0-28), libgcc-9-dev (= 9.2.1-28), libgcc-s1 (= 10-20200211-1), libgcc1 (= 1:10-20200211-1), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.4-2), libgmp10 (= 2:6.2.0+dfsg-3), libgnutls30 (= 3.6.11.1-2), libgomp1 (= 10-20200211-1), libgpg-error0 (= 1.37-1), libgssapi-krb5-2 (= 1.17-6), libhogweed5 (= 3.5.1+really3.5.1-2), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-2), libisl22 (= 0.22-2), libitm1 (= 10-20200211-1), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.49+dfsg-1), libldap-common (= 2.4.49+dfsg-1), liblsan0 (= 10-20200211-1), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-28), libncursesw6 (= 6.1+20191019-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 10-20200211-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl-dev (= 1.1.1d-2), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-28), libstdc++6 (= 10-20200211-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.2-1), libtasn1-6 (= 4.15.0-2), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-12), libtsan0 (= 10-20200211-1), libubsan1 (= 10-20200211-1), libuchardet0 (= 0.0.6-3), libudev1 (= 244.2-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-8), linux-libc-dev (= 5.4.19-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-2), mawk (= 1.3.4.20200120-1), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1.2), zlib1g-dev (= 1:1.2.11.dfsg-1.2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1581618304" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.10.2-3_s390x.deb ----------------------------- new Debian package, version 2.0. size 4856932 bytes: control archive=1920 bytes. 1050 bytes, 24 lines control 2405 bytes, 37 lines md5sums Package: libhts-dev Source: htslib Version: 1.10.2-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 6266 Depends: libhts3 (= 1.10.2-3), liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. drwxr-xr-x root/root 0 2020-02-13 18:25 ./ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/include/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/include/htslib/ -rw-r--r-- root/root 16101 2019-11-19 11:20 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 15928 2019-11-26 21:07 ./usr/include/htslib/cram.h -rw-r--r-- root/root 12245 2019-11-26 21:07 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 10979 2019-11-19 11:20 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 48171 2019-12-19 09:52 ./usr/include/htslib/hts.h -rw-r--r-- root/root 3889 2019-11-19 11:20 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11446 2017-09-27 15:40 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 3944 2019-10-01 22:06 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2124 2019-11-19 11:20 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5603 2019-11-19 11:20 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22882 2019-11-19 11:20 ./usr/include/htslib/khash.h -rw-r--r-- root/root 3995 2019-11-19 11:20 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 2972 2019-11-19 11:20 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 9186 2019-11-19 11:20 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11480 2019-11-19 11:20 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11416 2019-12-06 12:42 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8913 2019-11-26 21:07 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 67260 2019-11-26 21:07 ./usr/include/htslib/sam.h -rw-r--r-- root/root 15605 2019-11-26 21:07 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4925 2019-11-26 21:07 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12492 2019-11-26 21:07 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 59787 2020-02-13 18:25 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1681 2019-11-19 11:20 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4925 2019-10-01 22:06 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 5971398 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/libhts.so -> libhts.so.1.10.2-3 drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 624 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 273 2014-08-15 09:12 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2019-09-04 08:27 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 5152 2020-02-13 18:25 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 15663 2019-12-19 09:52 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/libhts-dev/copyright drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2020-02-13 18:25 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1539 2020-02-13 18:25 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2020-02-13 18:25 ./usr/share/man/man5/vcf.5.gz libhts3-dbgsym_1.10.2-3_s390x.deb --------------------------------- new Debian package, version 2.0. size 1163844 bytes: control archive=552 bytes. 389 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.10.2-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1252 Depends: libhts3 (= 1.10.2-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 3f3775ec4c09d0747f6e7d9d4b5b30f962313fe2 drwxr-xr-x root/root 0 2020-02-13 18:25 ./ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 1271776 2020-02-13 18:25 ./usr/lib/debug/.build-id/3f/3775ec4c09d0747f6e7d9d4b5b30f962313fe2.debug drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-13 18:25 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.10.2-3_s390x.deb -------------------------- new Debian package, version 2.0. size 339956 bytes: control archive=3604 bytes. 1153 bytes, 22 lines control 288 bytes, 4 lines md5sums 29 bytes, 1 lines shlibs 14024 bytes, 525 lines symbols 65 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.10.2-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 927 Depends: libbz2-1.0, libc6 (>= 2.29), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.1 (>= 1.1.0), zlib1g (>= 1:1.2.0) Breaks: libtabixpp (<< 1.0.0-5~), python-pysam (<< 0.15~), python3-pysam (<< 0.15~) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2020-02-13 18:25 ./ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 894920 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/libhts.so.1.10.2-3 lrwxrwxrwx root/root 0 2020-02-13 18:25 ./usr/lib/s390x-linux-gnu/libhts.so.3 -> libhts.so.1.10.2-3 drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 5152 2020-02-13 18:25 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 15663 2019-12-19 09:52 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/libhts3/copyright tabix-dbgsym_1.10.2-3_s390x.deb ------------------------------- new Debian package, version 2.0. size 1761104 bytes: control archive=692 bytes. 448 bytes, 12 lines control 399 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.10.2-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1962 Depends: tabix (= 1.10.2-3) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: b77a9bb090ace64ee968fa5b6df033f146bb4c4c baea1d04d63128aeaa4589329255698b1ac076b6 ea3369d54e243c9cb5bb545f085951e7bd06115a drwxr-xr-x root/root 0 2020-02-13 18:25 ./ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 805128 2020-02-13 18:25 ./usr/lib/debug/.build-id/b7/7a9bb090ace64ee968fa5b6df033f146bb4c4c.debug drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 834616 2020-02-13 18:25 ./usr/lib/debug/.build-id/ba/ea1d04d63128aeaa4589329255698b1ac076b6.debug drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.build-id/ea/ -rw-r--r-- root/root 241712 2020-02-13 18:25 ./usr/lib/debug/.build-id/ea/3369d54e243c9cb5bb545f085951e7bd06115a.debug drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 109584 2020-02-13 18:25 ./usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-02-13 18:25 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.10.2-3_s390x.deb ------------------------ new Debian package, version 2.0. size 345208 bytes: control archive=1108 bytes. 967 bytes, 19 lines control 481 bytes, 8 lines md5sums Package: tabix Source: htslib Version: 1.10.2-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1368 Depends: libbz2-1.0, libc6 (>= 2.15), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.1 (>= 1.1.0), zlib1g (>= 1:1.2.0) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This version of tabix is built from the HTSlib source. drwxr-xr-x root/root 0 2020-02-13 18:25 ./ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/bin/ -rwxr-xr-x root/root 153776 2020-02-13 18:25 ./usr/bin/bgzip -rwxr-xr-x root/root 592104 2020-02-13 18:25 ./usr/bin/htsfile -rwxr-xr-x root/root 608472 2020-02-13 18:25 ./usr/bin/tabix drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/doc/tabix/ -rw-r--r-- root/root 5152 2020-02-13 18:25 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 15663 2019-12-19 09:52 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-13 18:25 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-02-13 18:25 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz -rw-r--r-- root/root 1919 2020-02-13 18:25 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 2831 2020-02-13 18:25 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [579 B] Get:5 copy:/<>/apt_archive ./ Packages [664 B] Fetched 2206 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libjson-xs-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.0 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-1 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-2 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-1 [889 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 http://debian.oregonstate.edu/debian 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amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 4 [7148 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3100-1 [39.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.26-1 [27.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-perl all 4.02000-2 [88.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.52.0 [1312 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9407 kB in 0s (38.8 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20634 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.0_all.deb ... Unpacking netbase (6.0) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-1_amd64.deb ... Unpacking gpgconf (2.2.19-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libsqlite3-0:amd64 (3.31.1-2) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libmldbm-perl (2.05-2) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up libio-async-perl (0.75-1) ... Setting up patchutils (0.3.4-2+b1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.26-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.017-1) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b2) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3100-1) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up libjson-perl (4.02000-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (6.0) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b3) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-2) ... Setting up libnet-ssleay-perl (1.88-2) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.008001-2) ... Setting up libnet-dns-perl (1.21-1) ... Setting up libdevel-callchecker-perl (0.008-1+b1) ... Setting up libio-async-loop-epoll-perl (0.20-1) ... Setting up libhtml-parser-perl (3.72-3+b4) ... Setting up gpgconf (2.2.19-1) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.19-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libcgi-pm-perl (4.46-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003006-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.52.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 80240 Build-Time: 400 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 22 Job: htslib_1.10.2-3 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 433 Source-Version: 1.10.2-3 Space: 80240 Status: successful Version: 1.10.2-3 -------------------------------------------------------------------------------- Finished at 2020-02-14T18:34:11Z Build needed 00:07:13, 80240k disk space