sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.11-2 (s390x) Wed, 07 Oct 2020 23:44:35 +0000 | +==============================================================================+ Package: htslib Version: 1.11-2 Source Version: 1.11-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4809884b-d352-4605-acfc-41997717d1d0' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-XuPSd6/resolver-CcuRnQ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-07-0800.58.pdiff [2771 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-07-1400.59.pdiff [8030 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-07-2009.31.pdiff [11.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-10-07-2009.31.pdiff [11.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-07-0800.58.pdiff [3577 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-07-1400.59.pdiff [9802 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-07-2009.31.pdiff [13.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-10-07-2009.31.pdiff [13.5 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8070 kB] Fetched 8322 kB in 2s (5307 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1352 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-2 (dsc) [2354 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-2 (tar) [1333 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-2 (diff) [16.6 kB] Fetched 1352 kB in 0s (57.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-XuPSd6/htslib-1.11' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-XuPSd6' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [444 B] Get:5 copy:/<>/apt_archive ./ Packages [536 B] Fetched 1937 B in 0s (82.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed6:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle8:s390x libnghttp2-14:s390x libp11-kit0:s390x libperl5.30 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl-dev:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn11-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x pkg-config:s390x gnupg git bzr rng-tools:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libssl-doc:s390x libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:s390x ca-certificates:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:s390x krb5-locales:s390x libldap-common:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libdpkg-perl libelf1 libffi7:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgpg-error0:s390x libgssapi-krb5-2:s390x libhogweed6:s390x libicu67 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.4-2:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle8:s390x libnghttp2-14:s390x libp11-kit0:s390x libperl5.30 libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libsigsegv2 libssh2-1:s390x libssl-dev:s390x libssl1.1:s390x libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After this operation, 411 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.2.0-13 [199 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-18 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.35.1-1 [1977 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-13 [1738 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-13 [8670 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.0-9cross1 [199 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.0-9cross1 [6655 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.2.0-1 [16.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-9cross1 [195 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-1cross2 [1254 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.2.0-9cross1 [24.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.2.0-9cross1 [90.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.2.0-9cross1 [25.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.2.0-9cross1 [7956 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 10.2.0-9cross1 [293 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.2.0-9cross1 [441 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.2.0-9cross1 [125 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.0-9cross1 [664 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.0-9cross1 [13.0 MB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.2.0-1 [1452 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.7.6-1cross2 [1228 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-1cross2 [1990 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.0-9cross1 [1678 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.0-9cross1 [7314 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.2.0-1 [1176 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.0-2 [1361 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.2 [26.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.2.0-13 [24.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.17-1 [87.3 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-3 [2471 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-18 [344 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.2.0-13 [8116 B] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libbrotli1 s390x 1.0.9-2 [264 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-4 [45.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.8.10-1 [1181 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.17-1 [105 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-3 [2018 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-dev s390x 1.0.8-4 [30.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.6-1 [71.6 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.2.0+dfsg-6 [238 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libnettle8 s390x 3.6-2 [247 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed6 s390x 3.6-2 [312 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-4 [366 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.3.0-1 [84.5 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libffi7 s390x 3.3-4 [19.9 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.21-2 [333 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.16.0-2 [52.5 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.15-4 [1080 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.17-10 [63.8 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.17-10 [113 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6.1-2 [15.2 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1g-1 [1202 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.17-10 [343 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.17-10 [145 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6 [612 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2 [68.1 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-2 [103 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.53+dfsg-1 [220 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.41.0-3 [68.9 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.21.0-1.1 [55.0 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main s390x libgpg-error0 s390x 1.38-2 [72.9 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main s390x libgcrypt20 s390x 1.8.6-2 [487 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.8.0-2.1 [132 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.72.0-1 [311 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main s390x libcurl4-gnutls-dev s390x 7.72.0-1 [404 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.6-1 [51.8 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate-dev s390x 1.6-1 [42.1 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.2.0-13 [92.5 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.2.0-13 [25.3 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.2.0-13 [482 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.2.0-13 [125 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-18 [681 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.4-1+b1 [151 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.4-1+b1 [210 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libssl-dev s390x 1.1.1g-1 [1466 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-18 [1665 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (105 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../006-libperl5.30_5.30.3-4_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.3-4) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.30.3-4_amd64.deb ... Unpacking perl (5.30.3-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:s390x. Preparing to unpack .../009-gcc-10-base_10.2.0-13_s390x.deb ... Unpacking gcc-10-base:s390x (10.2.0-13) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../010-gcc-9-base_9.3.0-18_s390x.deb ... Unpacking gcc-9-base:s390x (9.3.0-18) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.38-5_amd64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.38-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.38-5_amd64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.2-4_all.deb ... Unpacking automake (1:1.16.2-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-s390x-linux-gnu. Preparing to unpack .../023-binutils-s390x-linux-gnu_2.35.1-1_amd64.deb ... Unpacking binutils-s390x-linux-gnu (2.35.1-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../025-libc6-dev_2.31-3_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-3) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../026-libstdc++-10-dev_10.2.0-13_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.0-13) ... Selecting previously unselected package g++-10. Preparing to unpack .../027-g++-10_10.2.0-13_amd64.deb ... Unpacking g++-10 (10.2.0-13) ... Selecting previously unselected package g++. Preparing to unpack .../028-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../029-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../030-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../031-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-s390x-linux-gnu-base:amd64. Preparing to unpack .../032-gcc-10-s390x-linux-gnu-base_10.2.0-9cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-9cross1) ... Selecting previously unselected package cpp-10-s390x-linux-gnu. Preparing to unpack .../033-cpp-10-s390x-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking cpp-10-s390x-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package cpp-s390x-linux-gnu. Preparing to unpack .../034-cpp-s390x-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-s390x-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../035-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../036-gcc-10-cross-base_10.2.0-9cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.0-9cross1) ... Selecting previously unselected package libc6-s390x-cross. Preparing to unpack .../037-libc6-s390x-cross_2.31-1cross2_all.deb ... Unpacking libc6-s390x-cross (2.31-1cross2) ... Selecting previously unselected package libgcc-s1-s390x-cross. Preparing to unpack .../038-libgcc-s1-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libgcc-s1-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libgomp1-s390x-cross. Preparing to unpack .../039-libgomp1-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libgomp1-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libitm1-s390x-cross. Preparing to unpack .../040-libitm1-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libitm1-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libatomic1-s390x-cross. Preparing to unpack .../041-libatomic1-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libatomic1-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libasan6-s390x-cross. Preparing to unpack .../042-libasan6-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libasan6-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libstdc++6-s390x-cross. Preparing to unpack .../043-libstdc++6-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libstdc++6-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libubsan1-s390x-cross. Preparing to unpack .../044-libubsan1-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libubsan1-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package libgcc-10-dev-s390x-cross. Preparing to unpack .../045-libgcc-10-dev-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libgcc-10-dev-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package gcc-10-s390x-linux-gnu. Preparing to unpack .../046-gcc-10-s390x-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking gcc-10-s390x-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package gcc-s390x-linux-gnu. Preparing to unpack .../047-gcc-s390x-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-s390x-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package linux-libc-dev-s390x-cross. Preparing to unpack .../048-linux-libc-dev-s390x-cross_5.7.6-1cross2_all.deb ... Unpacking linux-libc-dev-s390x-cross (5.7.6-1cross2) ... Selecting previously unselected package libc6-dev-s390x-cross. Preparing to unpack .../049-libc6-dev-s390x-cross_2.31-1cross2_all.deb ... Unpacking libc6-dev-s390x-cross (2.31-1cross2) ... Selecting previously unselected package libstdc++-10-dev-s390x-cross. Preparing to unpack .../050-libstdc++-10-dev-s390x-cross_10.2.0-9cross1_all.deb ... Unpacking libstdc++-10-dev-s390x-cross (10.2.0-9cross1) ... Selecting previously unselected package g++-10-s390x-linux-gnu. Preparing to unpack .../051-g++-10-s390x-linux-gnu_10.2.0-9cross1_amd64.deb ... Unpacking g++-10-s390x-linux-gnu (10.2.0-9cross1) ... Selecting previously unselected package g++-s390x-linux-gnu. Preparing to unpack .../052-g++-s390x-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking g++-s390x-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../053-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../054-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../055-libicu67_67.1-4_amd64.deb ... Unpacking libicu67:amd64 (67.1-4) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../056-libxml2_2.9.10+dfsg-6_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../057-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../058-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../059-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../060-libxml-libxml-perl_2.0134+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../061-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../062-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../063-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../064-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../065-libfile-homedir-perl_1.006-1_all.deb ... Unpacking libfile-homedir-perl (1.006-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../066-libdebian-dpkgcross-perl_2.6.15-3.1_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3.1) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../067-dpkg-cross_2.6.15-3.1_all.deb ... Unpacking dpkg-cross (2.6.15-3.1) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../068-crossbuild-essential-s390x_12.8_all.deb ... Unpacking crossbuild-essential-s390x (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../069-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../070-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../071-libdebhelper-perl_13.2.1_all.deb ... Unpacking libdebhelper-perl (13.2.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../072-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../073-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../074-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../075-dh-strip-nondeterminism_1.9.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.9.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../076-libelf1_0.181-1_amd64.deb ... Unpacking libelf1:amd64 (0.181-1) ... Selecting previously unselected package dwz. Preparing to unpack .../077-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../078-libglib2.0-0_2.66.0-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.0-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../079-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../080-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../081-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../082-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../083-debhelper_13.2.1_all.deb ... Unpacking debhelper (13.2.1) ... Selecting previously unselected package dh-exec. Preparing to unpack .../084-dh-exec_0.23.2_amd64.deb ... Unpacking dh-exec (0.23.2) ... Selecting previously unselected package libgcc-s1:s390x. Preparing to unpack .../085-libgcc-s1_10.2.0-13_s390x.deb ... Unpacking libgcc-s1:s390x (10.2.0-13) ... Selecting previously unselected package libcrypt1:s390x. 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Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up binutils-s390x-linux-gnu (2.35.1-1) ... Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.36-3+b1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.66.0-2) ... No schema files found: doing nothing. Setting up libc6-s390x-cross (2.31-1cross2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:s390x (5.8.10-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-10-base:s390x (10.2.0-13) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.7.6-1cross2) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-10-cross-base (10.2.0-9cross1) ... Setting up libitm1-s390x-cross (10.2.0-9cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.31-1cross2) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libgomp1-s390x-cross (10.2.0-9cross1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-9cross1) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:s390x (9.3.0-18) ... Setting up libstdc++-10-dev:amd64 (10.2.0-13) ... Setting up g++-10 (10.2.0-13) ... Setting up libtool (2.4.6-14) ... Setting up libatomic1-s390x-cross (10.2.0-9cross1) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-s390x-linux-gnu (10.2.0-9cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up cpp-s390x-linux-gnu (4:10.2.0-1) ... Setting up libstdc++6-s390x-cross (10.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (10.2.0-9cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libubsan1-s390x-cross (10.2.0-9cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.2.0-9cross1) ... Setting up gcc-10-s390x-linux-gnu (10.2.0-9cross1) ... Setting up gcc-s390x-linux-gnu (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.2.0-9cross1) ... Setting up g++-s390x-linux-gnu (4:10.2.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.17-1) ... Setting up libgcc-s1:s390x (10.2.0-13) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.31-3) ... Setting up libcrypt-dev:s390x (1:4.4.17-1) ... Setting up libtasn1-6:s390x (4.16.0-2) ... Setting up libc6-dev:s390x (2.31-3) ... Setting up libbz2-1.0:s390x (1.0.8-4) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:s390x (10.2.0-13) ... Setting up libitm1:s390x (10.2.0-13) ... Setting up libbz2-dev:s390x (1.0.8-4) ... Setting up libkeyutils1:s390x (1.6.1-2) ... Setting up liblzma5:s390x (5.2.4-1+b1) ... Setting up libgpg-error0:s390x (1.38-2) ... Setting up libssl1.1:s390x (1.1.1g-1) ... Setting up libbrotli1:s390x (1.0.9-2) ... Setting up libffi7:s390x (3.3-4) ... Setting up libnghttp2-14:s390x (1.41.0-3) ... Setting up libunistring2:s390x (0.9.10-4) ... Setting up libdeflate0:s390x (1.6-1) ... Setting up libgcrypt20:s390x (1.8.6-2) ... Setting up debhelper (13.2.1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up dh-exec (0.23.2) ... Setting up libidn2-0:s390x (2.3.0-1) ... Setting up libcom-err2:s390x (1.45.6-1) ... Setting up libgomp1:s390x (10.2.0-13) ... Setting up libkrb5support0:s390x (1.17-10) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2) ... Setting up libasan5:s390x (9.3.0-18) ... Setting up libnettle8:s390x (3.6-2) ... Setting up libgmp10:s390x (2:6.2.0+dfsg-6) ... Setting up libp11-kit0:s390x (0.23.21-2) ... Setting up libssl-dev:s390x (1.1.1g-1) ... Setting up libatomic1:s390x (10.2.0-13) ... Setting up libk5crypto3:s390x (1.17-10) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2) ... Setting up liblzma-dev:s390x (5.2.4-1+b1) ... Setting up libubsan1:s390x (10.2.0-13) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libssh2-1:s390x (1.8.0-2.1) ... Setting up libkrb5-3:s390x (1.17-10) ... Setting up libdeflate-dev:s390x (1.6-1) ... Setting up libpsl5:s390x (0.21.0-1.1) ... Setting up libhogweed6:s390x (3.6-2) ... Setting up libgcc-9-dev:s390x (9.3.0-18) ... Setting up libgnutls30:s390x (3.6.15-4) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.17-10) ... Setting up libstdc++-9-dev:s390x (9.3.0-18) ... Setting up libldap-2.4-2:s390x (2.4.53+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.72.0-1) ... Setting up libcurl4-gnutls-dev:s390x (7.72.0-1) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-11-amd64 #1 SMP Debian 4.19.146-1 (2020-09-17) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-1 dpkg-dev_1.20.5 g++-10_10.2.0-13 gcc-10_10.2.0-13 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-13 libstdc++-10-dev-s390x-cross_10.2.0-9cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-13 libstdc++6-s390x-cross_10.2.0-9cross1 linux-libc-dev_5.8.10-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35.1-1 binutils-common_2.35.1-1 binutils-s390x-linux-gnu_2.35.1-1 binutils-x86-64-linux-gnu_2.35.1-1 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-13 cpp-10-s390x-linux-gnu_10.2.0-9cross1 cpp-8_8.4.0-4 cpp-s390x-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-s390x_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.2-1 fdisk_2.36-3+b1 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.2.0-1 g++-10_10.2.0-13 g++-10-s390x-linux-gnu_10.2.0-9cross1 g++-s390x-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.0-13 gcc-10-base_10.2.0-13 gcc-10-cross-base_10.2.0-9cross1 gcc-10-s390x-linux-gnu_10.2.0-9cross1 gcc-10-s390x-linux-gnu-base_10.2.0-9cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-18 gcc-s390x-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-13 libasan6-s390x-cross_10.2.0-9cross1 libatomic1_10.2.0-13 libatomic1-s390x-cross_10.2.0-9cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35.1-1 libblkid1_2.36-3+b1 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-dev_2.31-3 libc6-dev-s390x-cross_2.31-1cross2 libc6-s390x-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-13 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-1 libctf0_2.35.1-1 libcurl3-gnutls_7.72.0-1 libcurl4-gnutls-dev_7.72.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdeflate-dev_1.6-1 libdeflate0_1.6-1 libdpkg-perl_1.20.5 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.25.2-1 libfdisk1_2.36-3+b1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-13 libgcc-10-dev-s390x-cross_10.2.0-9cross1 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-13 libgcc-s1-s390x-cross_10.2.0-9cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-13 libgomp1-s390x-cross_10.2.0-9cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-13 libitm1-s390x-cross_10.2.0-9cross1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.53+dfsg-1 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-13 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2+20200918-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libquadmath0_10.2.0-13 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.4-1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3+b1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1g-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-13 libstdc++-10-dev-s390x-cross_10.2.0-9cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-13 libstdc++6-s390x-cross_10.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_246.6-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtool_2.4.6-14 libtsan0_10.2.0-13 libubsan1_10.2.0-13 libubsan1-s390x-cross_10.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_246.6-1 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.10-1 linux-libc-dev-s390x-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.11-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller Homepage: https://github.com/samtools/htslib Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 815b8268bfd6526c2d5fc639f5e6f7ed264dcbf7 1333118 htslib_1.11.orig.tar.bz2 bccd1663128a1d3dab167b87fb99beadfe48d4d6 16612 htslib_1.11-2.debian.tar.xz Checksums-Sha256: cffadd9baa6fce27b8fe0b01a462b489f06a5433dfe92121f667f40f632538d7 1333118 htslib_1.11.orig.tar.bz2 bd9e722138ec968df07b585eec1c04c655a75156217de6137e879f17669a109c 16612 htslib_1.11-2.debian.tar.xz Files: c488c7a79283e5252c04cae335ee80e8 1333118 htslib_1.11.orig.tar.bz2 6bf40ba5d936b13f2c99e98b30a6e144 16612 htslib_1.11-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl96zdURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFFAw//XFlnFJx4VjYRjwP176YTEGzYEWQRq0xx bgQnLRvhRLeMYGc38zdelze0h9Y7Uj5zofwUR5H6MP416ZF76kq1JGzd/RxDq+FY tZAZLviYJA2NkFmTpYPEFIYPlPjorzGR/vQVqyLeZCWcLjLd4C+RD7B8x+j/Pyae gUZthBYBpQBaq15KJfM23nQh4NLz9CN9/yaFBeETyJdwxj/uOMvOzpaUZy0L/lBF ivGbLuX+9YGQpOAOFmnao61StMBawRt7bRTZjD31ooR+wBVI7BL4Dihkm3hZEaiR 6vhL18fcDxnzX9IJIJe2nyaOwHnxboyPzJt74mOafkB/YaZZNAxmHdhTsTwWBQep z0FxSrZ9R5q6sRIkxNyWlbYkolhpgAsoAXUWUhn9yeXLSq0pLA5/2CaEj5sRnYv8 /uIbuRslPFczale30XJU1+QdNp6zfxXF1E4+8bf6VZmpY3lRPYPJ6/JMAZtagZ5F 6XNiDa6V+XM3J6DzAEde0qFd+KZwMXUuviFB8MeZq1psg5ocAgRF1Ywf6nyGrBRR 9R0yAT0CoqGVXnSwkypSknyC76oXMphu0tmT+J3+sf/u2ckyumNgfMndKi6wFjZ3 +vX5XYi15rzecsqndNdEHKIRPT938ch4hL34jd23a6Yid3eVeJIc26aNslSft3ib AAQVYJghWgI= =xHvf -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.eCnErsos/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 5 07:40:05 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.11-2.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.11.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch dpkg-source: info: applying plugins_to_lib.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-4809884b-d352-4605-acfc-41997717d1d0 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from htslib-1.11/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f hts-object-files rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/plugins-dlhts test/sam test/test_bgzf test/test_kfunc test/test_kstring test/test_realn test/test-regidx test/test_str2int test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-path='/usr/local/lib/htslib:' install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-path=/usr/local/lib/htslib: configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for s390x-linux-gnu-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for s390x-linux-gnu... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... -ldl checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-2" \ libdir=/usr/lib/s390x-linux-gnu make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-2 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION_TEXT "1.11-2"' > version.h s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o plugin.o s390x-linux-gnu-ranlib libhts.a s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o knetfile.pico knetfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_net.pico hfile_net.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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-lm -ldl -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-2" \ libdir=/usr/lib/s390x-linux-gnu install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-2 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/s390x-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig if test -n "/usr/lib/s390x-linux-gnu/htslib"; then mkdir -p -m 755 /<>/debian/tmp/usr/lib/s390x-linux-gnu/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 ln -sf libhts.so.1.11-2 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so ln -sf libhts.so.1.11-2 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/s390x-linux-gnu#g;s#@-PACKAGE_VERSION@#1.11-2#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts3/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/htslib debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 debian/libhts3/usr/lib/s390x-linux-gnu/ install -d debian/.debhelper/generated/libhts3 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libhts.a debian/tmp/usr/lib/s390x-linux-gnu/libhts.so debian/libhts-dev/usr/lib/s390x-linux-gnu/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/libhts3/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/libhts-dev/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/vcf.5 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 mv debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new debian/libhts-dev/usr/share/man/man5/faidx.5 mv debian/libhts-dev/usr/share/man/man5/sam.5.dh-new debian/libhts-dev/usr/share/man/man5/sam.5 mv debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new debian/libhts-dev/usr/share/man/man5/vcf.5 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/libhts-dev/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/vcf.5 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 ln -s libhts.so.1.11-2 debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 rm -f debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so ln -s libhts.so.1.11-2 debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a -a install -d debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug -- debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 dwz: debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2: DWARF compression not beneficial - old size 819786 new size 821243 s390x-linux-gnu-objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug install -d debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/27 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/27/49c0b23548e566c1545d7f53650bae8dfa7f8f.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/27/49c0b23548e566c1545d7f53650bae8dfa7f8f.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/27/49c0b23548e566c1545d7f53650bae8dfa7f8f.debug debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a8 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a8/4cc6d8f0404214ce0046421cc7d699f27880cd.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a8/4cc6d8f0404214ce0046421cc7d699f27880cd.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a8/4cc6d8f0404214ce0046421cc7d699f27880cd.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cd s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cd/cae0019a9e254bc9b4dc27ed14bee50049a888.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cd/cae0019a9e254bc9b4dc27ed14bee50049a888.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cd/cae0019a9e254bc9b4dc27ed14bee50049a888.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/79 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/79/abfa0f3efeb0894558fdd18826ce5696906bb7.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/79/abfa0f3efeb0894558fdd18826ce5696906bb7.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/79/abfa0f3efeb0894558fdd18826ce5696906bb7.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/16 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/16/a45145b31d26c96ce402bf564eaff2fb7cf9ed.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/16/a45145b31d26c96ce402bf564eaff2fb7cf9ed.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/16/a45145b31d26c96ce402bf564eaff2fb7cf9ed.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97/4ab0a659e665e81282757e47cbc43d811bc3f1.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97/4ab0a659e665e81282757e47cbc43d811bc3f1.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/97/4ab0a659e665e81282757e47cbc43d811bc3f1.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/551eebd46f815efd50923f40cadbbd2d5ff643.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/551eebd46f815efd50923f40cadbbd2d5ff643.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/551eebd46f815efd50923f40cadbbd2d5ff643.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/88 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/88/98b880bb9d774358d009f6ced06ab2534dbe1c.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/88/98b880bb9d774358d009f6ced06ab2534dbe1c.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/88/98b880bb9d774358d009f6ced06ab2534dbe1c.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym make[1]: Leaving directory '/<>' dh_makeshlibs -a -a rm -f debian/libhts3/DEBIAN/shlibs install -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.11)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a -a dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.11-2 debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=16a45145b31d26c96ce402bf564eaff2fb7cf9ed 2749c0b23548e566c1545d7f53650bae8dfa7f8f 79abfa0f3efeb0894558fdd18826ce5696906bb7 a84cc6d8f0404214ce0046421cc7d699f27880cd cdcae0019a9e254bc9b4dc27ed14bee50049a888" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=8898b880bb9d774358d009f6ced06ab2534dbe1c 974ab0a659e665e81282757e47cbc43d811bc3f1 ef551eebd46f815efd50923f40cadbbd2d5ff643" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.11-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.11-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.11-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.11-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-2_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../htslib_1.11-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.11/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-07T23:49:55Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.11-2_s390x.changes: ---------------------------- Format: 1.8 Date: Mon, 05 Oct 2020 09:30:04 +0200 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.11-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 971542 Changes: htslib (1.11-2) unstable; urgency=medium . * Enable plugins Closes: #971542 * Add missing Depends: libcurl4-gnutls-dev, libdeflate-dev * Fix run-unit-test script * Fix autopkgtest Checksums-Sha1: cbf8b0b170e02a7dd699b674f6aa4a69764f7934 6167 htslib_1.11-2_s390x.buildinfo 3fdf028b377c17134290ae575d3189ed3466d884 3821088 libhts-dev_1.11-2_s390x.deb 610fa5dba129df5e0546139e984ac6f3a4d77293 1157036 libhts3-dbgsym_1.11-2_s390x.deb bab180770df4883eb1e149d2202b70921eb3758b 341116 libhts3_1.11-2_s390x.deb 49fc4c0fa23ad4a6c7561b753623bc33ca93fbd0 1508552 tabix-dbgsym_1.11-2_s390x.deb 67d56aa97e1d4ceaf38cb97db8c7490e11dc5f4a 308932 tabix_1.11-2_s390x.deb Checksums-Sha256: c64ac646c165daeeb1998e7cabb8f7f4bd16478b25f8fff31690d052df9c3d3b 6167 htslib_1.11-2_s390x.buildinfo c3ad669aa390cdc194679f15a6649eb53216c5f090640d1cda3ad69bd8563dc9 3821088 libhts-dev_1.11-2_s390x.deb c73e4ea7c9edf7a3bd5ce5588aa0e701a1b785c6f43d495cb892d789d8241bb3 1157036 libhts3-dbgsym_1.11-2_s390x.deb f0857b8699e1b7cf2c43eac88571c2de99b06c2f4418bcd4b79a284b16045d31 341116 libhts3_1.11-2_s390x.deb f5c749bd896d1a7d007aa7c9cf7813440b54507e800901b421a0c65439abffe3 1508552 tabix-dbgsym_1.11-2_s390x.deb 7bb24821aeeac537460cd4b0030ae54888573fd5e4afa21013ab6777b1c73215 308932 tabix_1.11-2_s390x.deb Files: 6b86847f2b387212debf186e2b986bcf 6167 science optional htslib_1.11-2_s390x.buildinfo 73785b21620313841b0204c1261d09cd 3821088 libdevel optional libhts-dev_1.11-2_s390x.deb 0096726022accb4a5f46543365198425 1157036 debug optional libhts3-dbgsym_1.11-2_s390x.deb ef49fee6a6a9ae1f03190d983be98594 341116 libs optional libhts3_1.11-2_s390x.deb f18de89320fe24633759c8398fd2a055 1508552 debug optional tabix-dbgsym_1.11-2_s390x.deb 5b3a2db518858f5818f52c599880757f 308932 science optional tabix_1.11-2_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Architecture: s390x Version: 1.11-2 Checksums-Md5: 73785b21620313841b0204c1261d09cd 3821088 libhts-dev_1.11-2_s390x.deb 0096726022accb4a5f46543365198425 1157036 libhts3-dbgsym_1.11-2_s390x.deb ef49fee6a6a9ae1f03190d983be98594 341116 libhts3_1.11-2_s390x.deb f18de89320fe24633759c8398fd2a055 1508552 tabix-dbgsym_1.11-2_s390x.deb 5b3a2db518858f5818f52c599880757f 308932 tabix_1.11-2_s390x.deb Checksums-Sha1: 3fdf028b377c17134290ae575d3189ed3466d884 3821088 libhts-dev_1.11-2_s390x.deb 610fa5dba129df5e0546139e984ac6f3a4d77293 1157036 libhts3-dbgsym_1.11-2_s390x.deb bab180770df4883eb1e149d2202b70921eb3758b 341116 libhts3_1.11-2_s390x.deb 49fc4c0fa23ad4a6c7561b753623bc33ca93fbd0 1508552 tabix-dbgsym_1.11-2_s390x.deb 67d56aa97e1d4ceaf38cb97db8c7490e11dc5f4a 308932 tabix_1.11-2_s390x.deb Checksums-Sha256: c3ad669aa390cdc194679f15a6649eb53216c5f090640d1cda3ad69bd8563dc9 3821088 libhts-dev_1.11-2_s390x.deb c73e4ea7c9edf7a3bd5ce5588aa0e701a1b785c6f43d495cb892d789d8241bb3 1157036 libhts3-dbgsym_1.11-2_s390x.deb f0857b8699e1b7cf2c43eac88571c2de99b06c2f4418bcd4b79a284b16045d31 341116 libhts3_1.11-2_s390x.deb f5c749bd896d1a7d007aa7c9cf7813440b54507e800901b421a0c65439abffe3 1508552 tabix-dbgsym_1.11-2_s390x.deb 7bb24821aeeac537460cd4b0030ae54888573fd5e4afa21013ab6777b1c73215 308932 tabix_1.11-2_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 07 Oct 2020 23:49:55 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35.1-1), binutils-common (= 2.35.1-1), binutils-x86-64-linux-gnu (= 2.35.1-1), bsdextrautils (= 2.36-3+b1), bsdutils (= 1:2.36-3+b1), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-13), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-exec (= 0.23.2), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-13), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-13), gcc-10-base (= 10.2.0-13), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-13), libatomic1 (= 10.2.0-13), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35.1-1), libblkid1 (= 2.36-3+b1), libbrotli1 (= 1.0.9-2), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-13), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-1), libctf0 (= 2.35.1-1), libcurl3-gnutls (= 7.72.0-1), libcurl4-gnutls-dev (= 7.72.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.254), libdebhelper-perl (= 13.2.1), libdeflate-dev (= 1.6-1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5), libelf1 (= 0.181-1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-13), libgcc-s1 (= 10.2.0-13), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.0-2), libgmp10 (= 2:6.2.0+dfsg-6), libgnutls30 (= 3.6.15-4), libgomp1 (= 10.2.0-13), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libhogweed6 (= 3.6-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-13), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libldap-2.4-2 (= 2.4.53+dfsg-1), liblsan0 (= 10.2.0-13), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3+b1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libp11-kit0 (= 0.23.21-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1), libquadmath0 (= 10.2.0-13), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.4-1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36-3+b1), libssh2-1 (= 1.8.0-2.1), libssl-dev (= 1.1.1g-1), libssl1.1 (= 1.1.1g-1), libstdc++-10-dev (= 10.2.0-13), libstdc++6 (= 10.2.0-13), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20200918-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-13), libubsan1 (= 10.2.0-13), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3+b1), libxml2 (= 2.9.10+dfsg-6), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.10-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.30+dfsg-7), util-linux (= 2.36-3+b1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1601883004" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.11-2_s390x.deb --------------------------- new Debian package, version 2.0. size 3821088 bytes: control archive=2032 bytes. 1207 bytes, 27 lines control 2469 bytes, 38 lines md5sums Package: libhts-dev Source: htslib Version: 1.11-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5141 Depends: libhts3 (= 1.11-2), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2020-10-05 07:30 ./ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/include/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/include/htslib/ -rw-r--r-- root/root 16081 2020-09-16 09:17 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 15930 2020-09-16 09:17 ./usr/include/htslib/cram.h -rw-r--r-- root/root 12934 2020-09-16 09:17 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 11004 2020-05-13 21:43 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 51041 2020-09-22 12:15 ./usr/include/htslib/hts.h -rw-r--r-- root/root 3989 2020-07-17 11:01 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11485 2020-05-14 08:28 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 3944 2019-10-01 22:06 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2509 2019-12-10 11:58 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22899 2020-09-16 09:17 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 2972 2019-11-19 11:20 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 8830 2020-07-17 11:01 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11480 2019-11-19 11:20 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 10837 2020-09-16 09:17 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 74997 2020-09-16 09:17 ./usr/include/htslib/sam.h -rw-r--r-- root/root 15795 2020-09-16 09:17 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4942 2020-07-29 13:09 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 62507 2020-09-18 10:44 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 4798292 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/libhts.so -> libhts.so.1.11-2 drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 621 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 273 2014-08-15 09:12 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2020-10-05 07:30 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 5411 2020-10-05 07:30 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5817 2020-10-05 07:30 ./usr/share/doc/libhts-dev/copyright drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2020-10-05 07:30 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2020-10-05 07:30 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2020-10-05 07:30 ./usr/share/man/man5/vcf.5.gz libhts3-dbgsym_1.11-2_s390x.deb ------------------------------- new Debian package, version 2.0. size 1157036 bytes: control archive=812 bytes. 549 bytes, 13 lines control 613 bytes, 6 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.11-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1283 Depends: libhts3 (= 1.11-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 16a45145b31d26c96ce402bf564eaff2fb7cf9ed 2749c0b23548e566c1545d7f53650bae8dfa7f8f 79abfa0f3efeb0894558fdd18826ce5696906bb7 a84cc6d8f0404214ce0046421cc7d699f27880cd cdcae0019a9e254bc9b4dc27ed14bee50049a888 drwxr-xr-x root/root 0 2020-10-05 07:30 ./ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/16/ -rw-r--r-- root/root 14744 2020-10-05 07:30 ./usr/lib/debug/.build-id/16/a45145b31d26c96ce402bf564eaff2fb7cf9ed.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/27/ -rw-r--r-- root/root 1152296 2020-10-05 07:30 ./usr/lib/debug/.build-id/27/49c0b23548e566c1545d7f53650bae8dfa7f8f.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/79/ -rw-r--r-- root/root 40720 2020-10-05 07:30 ./usr/lib/debug/.build-id/79/abfa0f3efeb0894558fdd18826ce5696906bb7.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 24920 2020-10-05 07:30 ./usr/lib/debug/.build-id/a8/4cc6d8f0404214ce0046421cc7d699f27880cd.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/cd/ -rw-r--r-- root/root 49280 2020-10-05 07:30 ./usr/lib/debug/.build-id/cd/cae0019a9e254bc9b4dc27ed14bee50049a888.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 11312 2020-10-05 07:30 ./usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-10-05 07:30 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.11-2_s390x.deb ------------------------ new Debian package, version 2.0. size 341116 bytes: control archive=3792 bytes. 1151 bytes, 22 lines control 681 bytes, 9 lines md5sums 27 bytes, 1 lines shlibs 14138 bytes, 529 lines symbols 67 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.11-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 928 Depends: libbz2-1.0, libc6 (>= 2.29), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.1 (>= 1.1.0), zlib1g (>= 1:1.2.0) Breaks: libtabixpp (<< 1.0.0-5~), python-pysam (<< 0.15~), python3-pysam (<< 0.15~) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2020-10-05 07:30 ./ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/htslib/ -rw-r--r-- root/root 10232 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so -rw-r--r-- root/root 30712 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so -rw-r--r-- root/root 30712 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/htslib/hfile_s3.so -rw-r--r-- root/root 18424 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so -rw-r--r-- root/root 796616 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/libhts.so.1.11-2 lrwxrwxrwx root/root 0 2020-10-05 07:30 ./usr/lib/s390x-linux-gnu/libhts.so.3 -> libhts.so.1.11-2 drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 5411 2020-10-05 07:30 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5817 2020-10-05 07:30 ./usr/share/doc/libhts3/copyright drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/man7/ -rw-r--r-- root/root 1886 2020-10-05 07:30 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.11-2_s390x.deb ----------------------------- new Debian package, version 2.0. size 1508552 bytes: control archive=696 bytes. 444 bytes, 12 lines control 399 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.11-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1700 Depends: tabix (= 1.11-2) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 8898b880bb9d774358d009f6ced06ab2534dbe1c 974ab0a659e665e81282757e47cbc43d811bc3f1 ef551eebd46f815efd50923f40cadbbd2d5ff643 drwxr-xr-x root/root 0 2020-10-05 07:30 ./ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 149256 2020-10-05 07:30 ./usr/lib/debug/.build-id/88/98b880bb9d774358d009f6ced06ab2534dbe1c.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/97/ -rw-r--r-- root/root 740176 2020-10-05 07:30 ./usr/lib/debug/.build-id/97/4ab0a659e665e81282757e47cbc43d811bc3f1.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.build-id/ef/ -rw-r--r-- root/root 734320 2020-10-05 07:30 ./usr/lib/debug/.build-id/ef/551eebd46f815efd50923f40cadbbd2d5ff643.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 101296 2020-10-05 07:30 ./usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-10-05 07:30 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.11-2_s390x.deb ---------------------- new Debian package, version 2.0. size 308932 bytes: control archive=1108 bytes. 914 bytes, 19 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.11-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1151 Depends: libbz2-1.0, libc6 (>= 2.15), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.2.0) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This version of tabix is built from the HTSlib source. drwxr-xr-x root/root 0 2020-10-05 07:30 ./ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/bin/ -rwxr-xr-x root/root 88240 2020-10-05 07:30 ./usr/bin/bgzip -rwxr-xr-x root/root 514272 2020-10-05 07:30 ./usr/bin/htsfile -rwxr-xr-x root/root 522464 2020-10-05 07:30 ./usr/bin/tabix drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/doc/tabix/ -rw-r--r-- root/root 5411 2020-10-05 07:30 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5817 2020-10-05 07:30 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-05 07:30 ./usr/share/man/man1/ -rw-r--r-- root/root 2604 2020-10-05 07:30 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1918 2020-10-05 07:30 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3319 2020-10-05 07:30 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [576 B] Get:5 copy:/<>/apt_archive ./ Packages [665 B] Fetched 2204 B in 0s (87.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 7513 kB of archives. After this operation, 21.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b5 [38.4 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1 [15.1 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.24-1 [128 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.07-3+b5 [22.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4 [38.3 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b2 [28.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004002-1 [13.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1 [173 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b6 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2 [45.7 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1 [98.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b7 [8696 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1 [12.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010006-1 [339 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.97.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7513 kB in 0s (33.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21323 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package gpg. 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Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.97.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 62964 Build-Time: 289 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 20 Job: htslib_1.11-2 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 320 Source-Version: 1.11-2 Space: 62964 Status: successful Version: 1.11-2 -------------------------------------------------------------------------------- Finished at 2020-10-07T23:49:55Z Build needed 00:05:20, 62964k disk space