sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.11-4 (armhf) Tue, 05 Jan 2021 12:55:25 +0000 | +==============================================================================+ Package: htslib Version: 1.11-4 Source Version: 1.11-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-6a646c9d-e5c4-497c-8f90-a439fac5912e' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-EWAJog/resolver-7mhy0K' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-05-0803.48.pdiff [8176 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-05-0803.48.pdiff [13.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-05-0803.48.pdiff [8176 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-05-0803.48.pdiff [13.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8296 kB] Fetched 8527 kB in 2s (5355 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3900 kB of archives. After this operation, 41.0 kB disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libc6 amd64 2.31-9 [2812 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libc-bin amd64 2.31-9 [814 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libc-dev-bin amd64 2.31-9 [274 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3900 kB in 0s (70.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10471 files and directories currently installed.) Preparing to unpack .../libc6_2.31-9_amd64.deb ... Unpacking libc6:amd64 (2.31-9) over (2.31-7) ... Setting up libc6:amd64 (2.31-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10471 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-9_amd64.deb ... Unpacking libc-bin (2.31-9) over (2.31-7) ... Setting up libc-bin (2.31-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10471 files and directories currently installed.) Preparing to unpack .../libc-dev-bin_2.31-9_amd64.deb ... Unpacking libc-dev-bin (2.31-9) over (2.31-7) ... Setting up libc-dev-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1353 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-4 (dsc) [2329 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-4 (tar) [1333 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.11-4 (diff) [17.1 kB] Fetched 1353 kB in 0s (21.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-EWAJog/htslib-1.11' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-EWAJog' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [444 B] Get:5 copy:/<>/apt_archive ./ Packages [533 B] Fetched 1934 B in 0s (78.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdpkg-perl libelf1 libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgssapi-krb5-2:armhf libhogweed6:armhf libicu67 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libperl5.32 libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl-dev:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf libcurl4-doc:armhf libgnutls28-dev:armhf libidn11-dev:armhf libkrb5-dev:armhf libldap2-dev:armhf librtmp-dev:armhf libssh2-1-dev:armhf pkg-config:armhf gnupg git bzr rng-tools:armhf gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf libssl-doc:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:armhf libnss-nis:armhf libnss-nisplus:armhf ca-certificates:armhf libfile-fcntllock-perl libarchive-cpio-perl libgpg-error-l10n:armhf krb5-locales:armhf libldap-common:armhf publicsuffix:armhf libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdpkg-perl libelf1 libffi7:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgcrypt20:armhf libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgpg-error0:armhf libgssapi-krb5-2:armhf libhogweed6:armhf libicu67 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.4-2:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libperl5.32 libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libsigsegv2 libssh2-1:armhf libssl-dev:armhf libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 219 MB of archives. After this operation, 924 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-4 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-6 [2820 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-6 [4105 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.2.1-3 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-19 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-3 [174 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-3 [33.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-3 [509 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.35.1-6 [2778 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-9 [2346 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-3 [1742 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-3 [9376 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.2.1-1cross1 [201 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [44.1 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.0-1 [16.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-1cross1 [197 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-5cross1 [1092 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.2.1-1cross1 [36.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.2.1-1cross1 [82.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.2.1-1cross1 [6684 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 10.2.1-1cross1 [2010 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.2.1-1cross1 [381 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.2.1-1cross1 [744 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.2.1-1cross1 [694 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [50.3 MB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.0-1 [1464 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.9.11-1cross1 [1304 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-5cross1 [1843 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.2.1-1cross1 [1759 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [47.1 MB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.0-1 [1184 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.1 [188 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-2 [165 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-3 [1311 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.1 [1010 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.2 [26.6 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.2.1-3 [36.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.17-1 [94.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-9 [2328 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-19 [370 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.2.1-3 [6928 B] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-4 [44.6 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.4-1 [1235 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.17-1 [113 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.6-1 [70.9 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-4 [110 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1i-1 [1307 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-4 [319 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [143 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.1-1 [72.1 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.1-1 [182 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-9 [1874 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libbz2-dev armhf 1.0.8-4 [29.2 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libgmp10 armhf 2:6.2.1+dfsg-1 [516 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libnettle8 armhf 3.6-2 [256 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libhogweed6 armhf 3.6-2 [302 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armhf libunistring2 armhf 0.9.10-4 [374 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armhf libidn2-0 armhf 2.3.0-4 [83.4 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armhf libffi7 armhf 3.3-5 [19.9 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armhf libp11-kit0 armhf 0.23.22-1 [317 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armhf libtasn1-6 armhf 4.16.0-2 [50.2 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armhf libgnutls30 armhf 3.7.0-5 [1290 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.6 [597 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [67.5 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [99.3 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armhf libldap-2.4-2 armhf 2.4.56+dfsg-1 [210 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armhf libnghttp2-14 armhf 1.42.0-1 [66.9 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armhf libpsl5 armhf 0.21.0-1.1 [54.0 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-2 [85.4 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armhf libgpg-error0 armhf 1.38-2 [69.0 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armhf libgcrypt20 armhf 1.8.7-2 [503 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armhf libcurl3-gnutls armhf 7.74.0-1 [305 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armhf libcurl4-gnutls-dev armhf 7.74.0-1 [402 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armhf libdeflate-dev armhf 1.7-1 [39.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.2.1-3 [84.7 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.2.1-3 [421 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.2.1-3 [746 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-19 [660 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main armhf liblzma5 armhf 5.2.5-1.0 [159 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main armhf liblzma-dev armhf 5.2.5-1.0 [220 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main armhf libssl-dev armhf 1.1.1i-1 [1604 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-19 [1761 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 219 MB in 2s (116 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10466 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-4_amd64.deb ... Unpacking bsdextrautils (2.36.1-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-6) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-6_amd64.deb ... Unpacking perl (5.32.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../009-gcc-10-base_10.2.1-3_armhf.deb ... Unpacking gcc-10-base:armhf (10.2.1-3) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../010-gcc-9-base_9.3.0-19_armhf.deb ... Unpacking gcc-9-base:armhf (9.3.0-19) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.21-3_amd64.deb ... Unpacking gettext-base (0.21-3) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.12-3_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-3) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.21-3_all.deb ... Unpacking autopoint (0.21-3) ... Selecting previously unselected package binutils-arm-linux-gnueabihf. Preparing to unpack .../023-binutils-arm-linux-gnueabihf_2.35.1-6_amd64.deb ... Unpacking binutils-arm-linux-gnueabihf (2.35.1-6) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../025-libtirpc-dev_1.3.1-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.1-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../026-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../027-libc6-dev_2.31-9_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-9) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../028-libstdc++-10-dev_10.2.1-3_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-3) ... Selecting previously unselected package g++-10. Preparing to unpack .../029-g++-10_10.2.1-3_amd64.deb ... Unpacking g++-10 (10.2.1-3) ... Selecting previously unselected package g++. Preparing to unpack .../030-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../031-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../032-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../033-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package gcc-10-arm-linux-gnueabihf-base:amd64. Preparing to unpack .../034-gcc-10-arm-linux-gnueabihf-base_10.2.1-1cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabihf-base:amd64 (10.2.1-1cross1) ... Selecting previously unselected package cpp-10-arm-linux-gnueabihf. Preparing to unpack .../035-cpp-10-arm-linux-gnueabihf_10.2.1-1cross1_amd64.deb ... Unpacking cpp-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabihf. Preparing to unpack .../036-cpp-arm-linux-gnueabihf_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabihf (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../037-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../038-gcc-10-cross-base_10.2.1-1cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.1-1cross1) ... Selecting previously unselected package libc6-armhf-cross. Preparing to unpack .../039-libc6-armhf-cross_2.31-5cross1_all.deb ... Unpacking libc6-armhf-cross (2.31-5cross1) ... Selecting previously unselected package libgcc-s1-armhf-cross. Preparing to unpack .../040-libgcc-s1-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libgcc-s1-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libgomp1-armhf-cross. Preparing to unpack .../041-libgomp1-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libgomp1-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libatomic1-armhf-cross. Preparing to unpack .../042-libatomic1-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libatomic1-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libasan6-armhf-cross. Preparing to unpack .../043-libasan6-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libasan6-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libstdc++6-armhf-cross. Preparing to unpack .../044-libstdc++6-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libstdc++6-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libubsan1-armhf-cross. Preparing to unpack .../045-libubsan1-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libubsan1-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package libgcc-10-dev-armhf-cross. Preparing to unpack .../046-libgcc-10-dev-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libgcc-10-dev-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package gcc-10-arm-linux-gnueabihf. Preparing to unpack .../047-gcc-10-arm-linux-gnueabihf_10.2.1-1cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabihf. Preparing to unpack .../048-gcc-arm-linux-gnueabihf_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabihf (4:10.2.0-1) ... Selecting previously unselected package linux-libc-dev-armhf-cross. Preparing to unpack .../049-linux-libc-dev-armhf-cross_5.9.11-1cross1_all.deb ... Unpacking linux-libc-dev-armhf-cross (5.9.11-1cross1) ... Selecting previously unselected package libc6-dev-armhf-cross. Preparing to unpack .../050-libc6-dev-armhf-cross_2.31-5cross1_all.deb ... Unpacking libc6-dev-armhf-cross (2.31-5cross1) ... Selecting previously unselected package libstdc++-10-dev-armhf-cross. Preparing to unpack .../051-libstdc++-10-dev-armhf-cross_10.2.1-1cross1_all.deb ... Unpacking libstdc++-10-dev-armhf-cross (10.2.1-1cross1) ... Selecting previously unselected package g++-10-arm-linux-gnueabihf. Preparing to unpack .../052-g++-10-arm-linux-gnueabihf_10.2.1-1cross1_amd64.deb ... Unpacking g++-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Selecting previously unselected package g++-arm-linux-gnueabihf. Preparing to unpack .../053-g++-arm-linux-gnueabihf_4%3a10.2.0-1_amd64.deb ... Unpacking g++-arm-linux-gnueabihf (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../054-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../055-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../056-libicu67_67.1-5_amd64.deb ... Unpacking libicu67:amd64 (67.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../057-libxml2_2.9.10+dfsg-6.3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../058-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../059-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../060-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../061-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../062-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../063-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../064-libconfig-auto-perl_0.44-1.1_all.deb ... Unpacking libconfig-auto-perl (0.44-1.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../065-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../066-libfile-homedir-perl_1.006-1_all.deb ... Unpacking libfile-homedir-perl (1.006-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../067-libdebian-dpkgcross-perl_2.6.15-3.1_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3.1) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../068-dpkg-cross_2.6.15-3.1_all.deb ... Unpacking dpkg-cross (2.6.15-3.1) ... Selecting previously unselected package crossbuild-essential-armhf. Preparing to unpack .../069-crossbuild-essential-armhf_12.9_all.deb ... Unpacking crossbuild-essential-armhf (12.9) ... Selecting previously unselected package libtool. Preparing to unpack .../070-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../071-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../072-libdebhelper-perl_13.3.1_all.deb ... Unpacking libdebhelper-perl (13.3.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../073-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../074-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../075-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../076-dh-strip-nondeterminism_1.9.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.9.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../077-libelf1_0.182-2_amd64.deb ... Unpacking libelf1:amd64 (0.182-2) ... Selecting previously unselected package dwz. Preparing to unpack .../078-dwz_0.13+20201015-2_amd64.deb ... 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Setting up file (1:5.39-3) ... Setting up gcc-10-base:armhf (10.2.1-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up libsigsegv2:amd64 (2.12-3) ... Setting up linux-libc-dev-armhf-cross (5.9.11-1cross1) ... Setting up autopoint (0.21-3) ... Setting up libperl5.32:amd64 (5.32.0-6) ... Setting up gcc-10-cross-base (10.2.1-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-9) ... Setting up binutils-arm-linux-gnueabihf (2.35.1-6) ... Setting up libelf1:amd64 (0.182-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-10-arm-linux-gnueabihf-base:amd64 (10.2.1-1cross1) ... Setting up gcc-9-base:armhf (9.3.0-19) ... Setting up libgomp1-armhf-cross (10.2.1-1cross1) ... Setting up gettext (0.21-3) ... Setting up libstdc++-10-dev:amd64 (10.2.1-3) ... Setting up g++-10 (10.2.1-3) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-armhf-cross (10.2.1-1cross1) ... Setting up libc6-dev-armhf-cross (2.31-5cross1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-armhf-cross (10.2.1-1cross1) ... Setting up perl (5.32.0-6) ... Setting up libstdc++6-armhf-cross (10.2.1-1cross1) ... Setting up libasan6-armhf-cross (10.2.1-1cross1) ... Setting up cpp-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up libubsan1-armhf-cross (10.2.1-1cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-10-dev-armhf-cross (10.2.1-1cross1) ... Setting up cpp-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up libstdc++-10-dev-armhf-cross (10.2.1-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up g++-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libcrypt1:armhf (1:4.4.17-1) ... Setting up libgcc-s1:armhf (10.2.1-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.31-9) ... Setting up libcrypt-dev:armhf (1:4.4.17-1) ... Setting up libtasn1-6:armhf (4.16.0-2) ... Setting up libbz2-1.0:armhf (1.0.8-4) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.6) ... Setting up libstdc++6:armhf (10.2.1-3) ... Setting up libkeyutils1:armhf (1.6.1-2) ... Setting up liblzma5:armhf (5.2.5-1.0) ... Setting up libgpg-error0:armhf (1.38-2) ... Setting up libssl1.1:armhf (1.1.1i-1) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libffi7:armhf (3.3-5) ... Setting up libnghttp2-14:armhf (1.42.0-1) ... Setting up libunistring2:armhf (0.9.10-4) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up libgcrypt20:armhf (1.8.7-2) ... Setting up debhelper (13.3.1) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-2) ... Setting up dh-exec (0.23.2) ... Setting up libidn2-0:armhf (2.3.0-4) ... Setting up libcom-err2:armhf (1.45.6-1) ... Setting up libgomp1:armhf (10.2.1-3) ... Setting up libkrb5support0:armhf (1.18.3-4) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up libasan5:armhf (9.3.0-19) ... Setting up libnettle8:armhf (3.6-2) ... Setting up libgmp10:armhf (2:6.2.1+dfsg-1) ... Setting up libp11-kit0:armhf (0.23.22-1) ... Setting up libssl-dev:armhf (1.1.1i-1) ... Setting up libatomic1:armhf (10.2.1-3) ... Setting up libk5crypto3:armhf (1.18.3-4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up liblzma-dev:armhf (5.2.5-1.0) ... Setting up libubsan1:armhf (10.2.1-3) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up libkrb5-3:armhf (1.18.3-4) ... Setting up libdeflate-dev:armhf (1.7-1) ... Setting up libpsl5:armhf (0.21.0-1.1) ... Setting up libhogweed6:armhf (3.6-2) ... Setting up libgcc-9-dev:armhf (9.3.0-19) ... Setting up libgnutls30:armhf (3.7.0-5) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:armhf (1.18.3-4) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up libldap-2.4-2:armhf (2.4.56+dfsg-1) ... Setting up libcurl3-gnutls:armhf (7.74.0-1) ... Setting up libcurl4-gnutls-dev:armhf (7.74.0-1) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.31-9) ... Setting up libbz2-dev:armhf (1.0.8-4) ... Setting up libstdc++-9-dev:armhf (9.3.0-19) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-6 dpkg-dev_1.20.5 g++-10_10.2.1-3 gcc-10_10.2.1-3 libc6-dev_2.31-9 libstdc++-10-dev_10.2.1-3 libstdc++-10-dev-armhf-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-3 libstdc++6-armhf-cross_10.2.1-1cross1 linux-libc-dev_5.10.4-1 Package versions: adduser_3.118 apt_2.1.15 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-6 binutils-arm-linux-gnueabihf_2.35.1-6 binutils-common_2.35.1-6 binutils-x86-64-linux-gnu_2.35.1-6 bsdextrautils_2.36.1-4 bsdutils_1:2.36.1-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.1-3 cpp-10-arm-linux-gnueabihf_10.2.1-1cross1 cpp-8_8.4.0-5 cpp-arm-linux-gnueabihf_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-armhf_12.9 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-exec_0.23.2 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-5 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-4 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.1-3 g++-10-arm-linux-gnueabihf_10.2.1-1cross1 g++-arm-linux-gnueabihf_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.1-3 gcc-10-arm-linux-gnueabihf_10.2.1-1cross1 gcc-10-arm-linux-gnueabihf-base_10.2.1-1cross1 gcc-10-base_10.2.1-3 gcc-10-cross-base_10.2.1-1cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-arm-linux-gnueabihf_4:10.2.0-1 gettext_0.21-3 gettext-base_0.21-3 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.15 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.1-3 libasan6-armhf-cross_10.2.1-1cross1 libatomic1_10.2.1-3 libatomic1-armhf-cross_10.2.1-1cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-1 libaudit1_1:3.0-1 libbinutils_2.35.1-6 libblkid1_2.36.1-4 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-9 libc-dev-bin_2.31-9 libc6_2.31-9 libc6-armhf-cross_2.31-5cross1 libc6-dev_2.31-9 libc6-dev-armhf-cross_2.31-5cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-6 libctf0_2.35.1-6 libcurl3-gnutls_7.74.0-1 libcurl4-gnutls-dev_7.74.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.5 libelf1_0.182-2 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-4 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-3 libgcc-10-dev-armhf-cross_10.2.1-1cross1 libgcc-9-dev_9.3.0-19 libgcc-s1_10.2.1-3 libgcc-s1-armhf-cross_10.2.1-1cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-3 libgomp1-armhf-cross_10.2.1-1cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-3 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libldap-2.4-2_2.4.56+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-3 liblz4-1_1.9.3-1 liblzma-dev_5.2.5-1.0 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-4 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-5 libncursesw6_6.2+20201114-2 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-2 libpam-modules-bin_1.4.0-2 libpam-runtime_1.4.0-2 libpam0g_1.4.0-2 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libquadmath0_10.2.1-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1 libselinux1_3.1-2+b2 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-4 libss2_1.45.6-1 libssh2-1_1.9.0-2 libssl-dev_1.1.1i-1 libssl1.1_1.1.1i-1 libstdc++-10-dev_10.2.1-3 libstdc++-10-dev-armhf-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-3 libstdc++6-armhf-cross_10.2.1-1cross1 libsub-override-perl_0.09-2 libsystemd0_247.2-4 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-14 libtsan0_10.2.1-3 libubsan1_10.2.1-3 libubsan1-armhf-cross_10.2.1-1cross1 libuchardet0_0.0.7-1 libudev1_247.2-4 libunistring2_0.9.10-4 libuuid1_2.36.1-4 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.3+b1 libxxhash0_0.8.0-1 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.4-1 linux-libc-dev-armhf-cross_5.9.11-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-4 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.0-6 po-debconf_1.0.21+nmu1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020f-1 ucf_3.0043 util-linux_2.36.1-4 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.11-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller Homepage: https://github.com/samtools/htslib Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 815b8268bfd6526c2d5fc639f5e6f7ed264dcbf7 1333118 htslib_1.11.orig.tar.bz2 15aba4a37194c0db94a8c86dba0dd15769270793 17096 htslib_1.11-4.debian.tar.xz Checksums-Sha256: cffadd9baa6fce27b8fe0b01a462b489f06a5433dfe92121f667f40f632538d7 1333118 htslib_1.11.orig.tar.bz2 0e96663ceda766d8dd78b476e196c214c6e3c05fbe02d8f1d56191daa65df370 17096 htslib_1.11-4.debian.tar.xz Files: c488c7a79283e5252c04cae335ee80e8 1333118 htslib_1.11.orig.tar.bz2 1e6778e704926fe2398f7caa571cb24b 17096 htslib_1.11-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl/wkS8ACgkQPCZ2P2xn 5uJPIhAAx9hf8NelyFn35HQcjeuc2hyb+TMmBwpA35HRgRT6TW+7c9UZEFSgVpf3 1ehWCl2C4gUq4d49hd6Ljq3Wk9LDwYXbiYF8VHuJYrX2hQnflnQELhpG1KQrtxKa LOyJvutqWnY5LXHmsraAXnK48DJGk+wj2UUB8Geld9JXagpg2X/OujBIV4H2qX1n ZsCZD2VJ17BVvQ0mwUMSTFM4BXD987iMd6PzpLy1nb9EroTTOU/LMEiSyLJUln12 wyOp45rxL+m7gDcw8Wy3nk16lxSrID8G2T4SsSfygmgAJJOOhzDxLii2R1Uow3e5 xewGFWqAH457wvFxsW3oT197ePYFNU9jhtRSFa/FrhQW6O5P/gneOqrfINgR4t6v MUXkcpAQNJ9KtHUBqZ1nTz9RyBJ/FQY73s76ZN0FDUa2DIYBc1z6inmMMw2o8JMt LSF+n/IlPcB4wiNiYUFTpRQxLnwAjyGsF9/ATotcmI7B0l86YN1toRWyfr5nrLnr 4VlgBeyrsZIDJBO177tHgEOxDoDXzClvdNNENBAE5ILqJkaOOyPzFYYEHXsJsk/T +Nq1CuVjaA7TNWOktczOb6BMMNVdZnjkfgo3FUUvhDe08RJ501CKK6WYat7wEaNp we4wcXBJoaofsYYYPy2Oi5+MxrShxZijlqKZX8xkSoQTtLiomh4= =wBH4 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.Ix9S6eHx/trustedkeys.kbx': General error gpgv: Signature made Sat Jan 2 15:28:47 2021 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.11-4.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.11.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.11-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying 273c5e76a1694aa2a13fd51c133abed2ef8ab4d3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-6a646c9d-e5c4-497c-8f90-a439fac5912e SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.11-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from htslib-1.11/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f hts-object-files rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/plugins-dlhts test/sam test/test_bgzf test/test_kfunc test/test_kstring test/test_realn test/test-regidx test/test_str2int test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir='/htslib' --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:' install -d /<>/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/htslib --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib: configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to accept ISO C89... none needed checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for arm-linux-gnueabihf-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking shared library type for arm-linux-gnueabihf... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... -ldl checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/arm-linux-gnueabihf make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/<>' arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION_TEXT "1.11-4"' > version.h arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/string_alloc.o plugin.o arm-linux-gnueabihf-ranlib libhts.a arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o knetfile.pico knetfile.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_net.pico hfile_net.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o 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test/fieldarith.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hfile test/hfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/pileup test/pileup.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 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arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_view test/test_view.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_index test/test_index.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -ldl -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.11-4" \ libdir=/usr/lib/arm-linux-gnueabihf install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.11-4 libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/arm-linux-gnueabihf /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig if test -n "/htslib"; then mkdir -p -m 755 /<>/debian/tmp/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 ln -sf libhts.so.1.11-4 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so ln -sf libhts.so.1.11-4 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/arm-linux-gnueabihf#g;s#@-PACKAGE_VERSION@#1.11-4#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts3/usr/lib/arm-linux-gnueabihf cp --reflink=auto -a ./debian/tmp/htslib debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.3 debian/libhts3/usr/lib/arm-linux-gnueabihf/ install -d debian/libhts3/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts3 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.a debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so debian/libhts-dev/usr/lib/arm-linux-gnueabihf/ install -d debian/libhts-dev/usr/lib/arm-linux-gnueabihf/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/arm-linux-gnueabihf/pkgconfig/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/libhts3/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.3 ln -s libhts.so.1.11-4 debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.3 rm -f debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so ln -s libhts.so.1.11-4 debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a -a install -d debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug -- debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 dwz: debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4: DWARF compression not beneficial - old size 747806 new size 756326 arm-linux-gnueabihf-objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug install -d debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix arm-linux-gnueabihf-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d2 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d2/5595e024be13e3f4a54e7e1395e28fdbc22c9b.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d2/5595e024be13e3f4a54e7e1395e28fdbc22c9b.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/d2/5595e024be13e3f4a54e7e1395e28fdbc22c9b.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ca arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ca/44fa1998eba7f9c010c146ad35e12e7d8f89d3.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ca/44fa1998eba7f9c010c146ad35e12e7d8f89d3.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ca/44fa1998eba7f9c010c146ad35e12e7d8f89d3.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/42 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/42/1322fddf63cee44d18916730e0db3ac704109d.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/42/1322fddf63cee44d18916730e0db3ac704109d.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/42/1322fddf63cee44d18916730e0db3ac704109d.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/39 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/39/8262c07495d0645d7a1ddebeb9a533af853296.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/39/8262c07495d0645d7a1ddebeb9a533af853296.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/39/8262c07495d0645d7a1ddebeb9a533af853296.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/9f arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/9f/88fcdf31ff0dd5f352bb79cdc7269a39afbc19.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/9f/88fcdf31ff0dd5f352bb79cdc7269a39afbc19.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/9f/88fcdf31ff0dd5f352bb79cdc7269a39afbc19.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/427922c3b3685fa4a09a90e3ee526950d5b8d2.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/427922c3b3685fa4a09a90e3ee526950d5b8d2.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2e/427922c3b3685fa4a09a90e3ee526950d5b8d2.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/32 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/32/4157d5e82aa562588f29a470b4a2f0a647dff2.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/32/4157d5e82aa562588f29a470b4a2f0a647dff2.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/32/4157d5e82aa562588f29a470b4a2f0a647dff2.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/07 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/07/d93020fb0b8f6b7dc74039645da4f3e465499d.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/07/d93020fb0b8f6b7dc74039645da4f3e465499d.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/07/d93020fb0b8f6b7dc74039645da4f3e465499d.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym make[1]: Leaving directory '/<>' dh_makeshlibs -a -a rm -f debian/libhts3/DEBIAN/shlibs install -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.11)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a -a dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=398262c07495d0645d7a1ddebeb9a533af853296 421322fddf63cee44d18916730e0db3ac704109d 9f88fcdf31ff0dd5f352bb79cdc7269a39afbc19 ca44fa1998eba7f9c010c146ad35e12e7d8f89d3 d25595e024be13e3f4a54e7e1395e28fdbc22c9b" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=07d93020fb0b8f6b7dc74039645da4f3e465499d 2e427922c3b3685fa4a09a90e3ee526950d5b8d2 324157d5e82aa562588f29a470b4a2f0a647dff2" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.11-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.11-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.11-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.11-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.11-4_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../htslib_1.11-4_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.11/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-01-05T13:01:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.11-4_armhf.changes: ---------------------------- Format: 1.8 Date: Sat, 02 Jan 2021 16:28:22 +0100 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.11-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 978094 Changes: htslib (1.11-4) unstable; urgency=medium . * libhts3: Breaks+Replaces: libhts-dev (<< 1.11-3). Closes: #978094 Checksums-Sha1: df108c8919401ddcacb9272934cf2473df55e25b 6253 htslib_1.11-4_armhf.buildinfo 346415638195d0659c4723ab0e51c6c369cae4cc 3761952 libhts-dev_1.11-4_armhf.deb 0f7281520525929d37751d55f5b6fb0aaaf340bc 1075692 libhts3-dbgsym_1.11-4_armhf.deb bb0a6717da595156b54d211ab33ebe6d3f5f7f68 332472 libhts3_1.11-4_armhf.deb aef80f14a55fd798c40d0e37e654e48b79502250 1392696 tabix-dbgsym_1.11-4_armhf.deb e138995b601e0b43c2159570a1133af2ae421654 305744 tabix_1.11-4_armhf.deb Checksums-Sha256: dfdf2f98133035445bbc244689f88076a8c5d3098e4dbac02bb076e3f259ef75 6253 htslib_1.11-4_armhf.buildinfo b3959f2f2d26124271d2141838b557396a3719036096ac687f7e21791db2ddc5 3761952 libhts-dev_1.11-4_armhf.deb 4582279e21dc3091d2260b440eeddccda95c170cffacc0ba2cacce82df72fef2 1075692 libhts3-dbgsym_1.11-4_armhf.deb 695456cb2dfd5f285e98a4864e94ba82aae95b5aa17294d106725178a692cb03 332472 libhts3_1.11-4_armhf.deb b0efee0f50a615b2c822f5b22aa84c1b95a6407a22c7264be087e1d1a0e645d5 1392696 tabix-dbgsym_1.11-4_armhf.deb 6574553f8f83e66f285da7e2da9fabca640a57fb34e888e6f61ab721ef89a25c 305744 tabix_1.11-4_armhf.deb Files: 784e8da30a3b1e461e782ee75fc2e315 6253 science optional htslib_1.11-4_armhf.buildinfo 7ac34dab796734964a9d9b38a92fc360 3761952 libdevel optional libhts-dev_1.11-4_armhf.deb 7e328f96490b685d259f784a04a23d5a 1075692 debug optional libhts3-dbgsym_1.11-4_armhf.deb 0ed9234f30d7951bd3c6eadc335f6ddc 332472 libs optional libhts3_1.11-4_armhf.deb 0dd8c9f0d82d7676ace83f3459ded375 1392696 debug optional tabix-dbgsym_1.11-4_armhf.deb 09083aaa2d403a17917b99c0ddde45c4 305744 science optional tabix_1.11-4_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Architecture: armhf Version: 1.11-4 Checksums-Md5: 7ac34dab796734964a9d9b38a92fc360 3761952 libhts-dev_1.11-4_armhf.deb 7e328f96490b685d259f784a04a23d5a 1075692 libhts3-dbgsym_1.11-4_armhf.deb 0ed9234f30d7951bd3c6eadc335f6ddc 332472 libhts3_1.11-4_armhf.deb 0dd8c9f0d82d7676ace83f3459ded375 1392696 tabix-dbgsym_1.11-4_armhf.deb 09083aaa2d403a17917b99c0ddde45c4 305744 tabix_1.11-4_armhf.deb Checksums-Sha1: 346415638195d0659c4723ab0e51c6c369cae4cc 3761952 libhts-dev_1.11-4_armhf.deb 0f7281520525929d37751d55f5b6fb0aaaf340bc 1075692 libhts3-dbgsym_1.11-4_armhf.deb bb0a6717da595156b54d211ab33ebe6d3f5f7f68 332472 libhts3_1.11-4_armhf.deb aef80f14a55fd798c40d0e37e654e48b79502250 1392696 tabix-dbgsym_1.11-4_armhf.deb e138995b601e0b43c2159570a1133af2ae421654 305744 tabix_1.11-4_armhf.deb Checksums-Sha256: b3959f2f2d26124271d2141838b557396a3719036096ac687f7e21791db2ddc5 3761952 libhts-dev_1.11-4_armhf.deb 4582279e21dc3091d2260b440eeddccda95c170cffacc0ba2cacce82df72fef2 1075692 libhts3-dbgsym_1.11-4_armhf.deb 695456cb2dfd5f285e98a4864e94ba82aae95b5aa17294d106725178a692cb03 332472 libhts3_1.11-4_armhf.deb b0efee0f50a615b2c822f5b22aa84c1b95a6407a22c7264be087e1d1a0e645d5 1392696 tabix-dbgsym_1.11-4_armhf.deb 6574553f8f83e66f285da7e2da9fabca640a57fb34e888e6f61ab721ef89a25c 305744 tabix_1.11-4_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 05 Jan 2021 13:01:15 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-3), autotools-dev (= 20180224.1+nmu1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1-2), binutils (= 2.35.1-6), binutils-common (= 2.35.1-6), binutils-x86-64-linux-gnu (= 2.35.1-6), bsdextrautils (= 2.36.1-4), bsdutils (= 1:2.36.1-4), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.1-3), dash (= 0.5.11+git20200708+dd9ef66-5), debconf (= 1.5.74), debhelper (= 13.3.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-exec (= 0.23.2), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.1-3), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.1-3), gcc-10-base (= 10.2.1-3), gettext (= 0.21-3), gettext-base (= 0.21-3), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-9), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-3), libatomic1 (= 10.2.1-3), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-1), libaudit1 (= 1:3.0-1), libbinutils (= 2.35.1-6), libblkid1 (= 2.36.1-4), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.31-9), libc-dev-bin (= 2.31-9), libc6 (= 2.31-9), libc6-dev (= 2.31-9), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-3), libcom-err2 (= 1.45.6-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-6), libctf0 (= 2.35.1-6), libcurl3-gnutls (= 7.74.0-1), libcurl4-gnutls-dev (= 7.74.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.256), libdebhelper-perl (= 13.3.1), libdeflate-dev (= 1.7-1), libdeflate0 (= 1.7-1), libdpkg-perl (= 1.20.5), libelf1 (= 0.182-2), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.1-3), libgcc-s1 (= 10.2.1-3), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.0-5), libgomp1 (= 10.2.1-3), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libhogweed6 (= 3.6-2), libicu67 (= 67.1-5), libidn2-0 (= 2.3.0-4), libisl23 (= 0.23-1), libitm1 (= 10.2.1-3), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libldap-2.4-2 (= 2.4.56+dfsg-1), liblsan0 (= 10.2.1-3), liblz4-1 (= 1.9.3-1), liblzma-dev (= 5.2.5-1.0), liblzma5 (= 5.2.5-1.0), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-4), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.42.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-2), libpam-modules-bin (= 1.4.0-2), libpam-runtime (= 1.4.0-2), libpam0g (= 1.4.0-2), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-6), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1), libquadmath0 (= 10.2.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-2+b2), libsigsegv2 (= 2.12-3), libsmartcols1 (= 2.36.1-4), libssh2-1 (= 1.9.0-2), libssl-dev (= 1.1.1i-1), libssl1.1 (= 1.1.1i-1), libstdc++-10-dev (= 10.2.1-3), libstdc++6 (= 10.2.1-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.2-4), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.1-3), libubsan1 (= 10.2.1-3), libuchardet0 (= 0.0.7-1), libudev1 (= 247.2-4), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-4), libxml2 (= 2.9.10+dfsg-6.3+b1), libzstd1 (= 1.4.8+dfsg-1), linux-libc-dev (= 5.10.4-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-6), perl (= 5.32.0-6), perl-base (= 5.32.0-6), perl-modules-5.32 (= 5.32.0-6), po-debconf (= 1.0.21+nmu1), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-4), xz-utils (= 5.2.5-1.0), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609601302" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.11-4_armhf.deb --------------------------- new Debian package, version 2.0. size 3761952 bytes: control archive=1956 bytes. 1207 bytes, 27 lines control 2289 bytes, 35 lines md5sums Package: libhts-dev Source: htslib Version: 1.11-4 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 4733 Depends: libhts3 (= 1.11-4), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2021-01-02 15:28 ./ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/include/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/include/htslib/ -rw-r--r-- root/root 16081 2020-09-16 09:17 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 15930 2020-09-16 09:17 ./usr/include/htslib/cram.h -rw-r--r-- root/root 12934 2020-09-16 09:17 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 11004 2020-05-13 21:43 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 51041 2020-09-22 12:15 ./usr/include/htslib/hts.h -rw-r--r-- root/root 3989 2020-07-17 11:01 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11485 2020-05-14 08:28 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 3944 2019-10-01 22:06 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2509 2019-12-10 11:58 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22899 2020-09-16 09:17 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 2972 2019-11-19 11:20 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 8830 2020-07-17 11:01 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11480 2019-11-19 11:20 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 10837 2020-09-16 09:17 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 74997 2020-09-16 09:17 ./usr/include/htslib/sam.h -rw-r--r-- root/root 15795 2020-09-16 09:17 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4942 2020-07-29 13:09 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 62507 2020-09-18 10:44 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 4389808 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/libhts.a lrwxrwxrwx root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/libhts.so -> libhts.so.1.11-4 drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 625 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 273 2014-08-15 09:12 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2019-09-04 08:27 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 5605 2021-01-02 15:28 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/libhts-dev/copyright libhts3-dbgsym_1.11-4_armhf.deb ------------------------------- new Debian package, version 2.0. size 1075692 bytes: control archive=820 bytes. 549 bytes, 13 lines control 617 bytes, 6 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.11-4 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1184 Depends: libhts3 (= 1.11-4) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 398262c07495d0645d7a1ddebeb9a533af853296 421322fddf63cee44d18916730e0db3ac704109d 9f88fcdf31ff0dd5f352bb79cdc7269a39afbc19 ca44fa1998eba7f9c010c146ad35e12e7d8f89d3 d25595e024be13e3f4a54e7e1395e28fdbc22c9b drwxr-xr-x root/root 0 2021-01-02 15:28 ./ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 38604 2021-01-02 15:28 ./usr/lib/debug/.build-id/39/8262c07495d0645d7a1ddebeb9a533af853296.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/42/ -rw-r--r-- root/root 45848 2021-01-02 15:28 ./usr/lib/debug/.build-id/42/1322fddf63cee44d18916730e0db3ac704109d.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/9f/ -rw-r--r-- root/root 13128 2021-01-02 15:28 ./usr/lib/debug/.build-id/9f/88fcdf31ff0dd5f352bb79cdc7269a39afbc19.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 23752 2021-01-02 15:28 ./usr/lib/debug/.build-id/ca/44fa1998eba7f9c010c146ad35e12e7d8f89d3.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/d2/ -rw-r--r-- root/root 1060452 2021-01-02 15:28 ./usr/lib/debug/.build-id/d2/5595e024be13e3f4a54e7e1395e28fdbc22c9b.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 11452 2021-01-02 15:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-01-02 15:28 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.11-4_armhf.deb ------------------------ new Debian package, version 2.0. size 332472 bytes: control archive=3880 bytes. 1208 bytes, 23 lines control 889 bytes, 12 lines md5sums 27 bytes, 1 lines shlibs 14138 bytes, 529 lines symbols 67 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.11-4 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 600 Depends: libbz2-1.0, libc6 (>= 2.29), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.1 (>= 1.1.0), zlib1g (>= 1:1.2.0) Breaks: libhts-dev (<< 1.11-3), libtabixpp (<< 1.0.0-5~), python-pysam (<< 0.15~), python3-pysam (<< 0.15~) Replaces: libhts-dev (<< 1.11-3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2021-01-02 15:28 ./ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/htslib/ -rw-r--r-- root/root 9664 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so -rw-r--r-- root/root 17856 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so -rw-r--r-- root/root 21952 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so -rw-r--r-- root/root 13760 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so -rw-r--r-- root/root 476592 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/libhts.so.1.11-4 lrwxrwxrwx root/root 0 2021-01-02 15:28 ./usr/lib/arm-linux-gnueabihf/libhts.so.3 -> libhts.so.1.11-4 drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 5605 2021-01-02 15:28 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/libhts3/copyright drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2021-01-02 15:28 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2021-01-02 15:28 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2021-01-02 15:28 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/man/man7/ -rw-r--r-- root/root 1886 2021-01-02 15:28 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.11-4_armhf.deb ----------------------------- new Debian package, version 2.0. size 1392696 bytes: control archive=700 bytes. 444 bytes, 12 lines control 403 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.11-4 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1550 Depends: tabix (= 1.11-4) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 07d93020fb0b8f6b7dc74039645da4f3e465499d 2e427922c3b3685fa4a09a90e3ee526950d5b8d2 324157d5e82aa562588f29a470b4a2f0a647dff2 drwxr-xr-x root/root 0 2021-01-02 15:28 ./ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/07/ -rw-r--r-- root/root 128972 2021-01-02 15:28 ./usr/lib/debug/.build-id/07/d93020fb0b8f6b7dc74039645da4f3e465499d.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/2e/ -rw-r--r-- root/root 672016 2021-01-02 15:28 ./usr/lib/debug/.build-id/2e/427922c3b3685fa4a09a90e3ee526950d5b8d2.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 667904 2021-01-02 15:28 ./usr/lib/debug/.build-id/32/4157d5e82aa562588f29a470b4a2f0a647dff2.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 101432 2021-01-02 15:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-01-02 15:28 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.11-4_armhf.deb ---------------------- new Debian package, version 2.0. size 305744 bytes: control archive=1120 bytes. 955 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.11-4 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 728 Depends: libbz2-1.0, libc6 (>= 2.15), libdeflate0 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.2.0) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2021-01-02 15:28 ./ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/bin/ -rwxr-xr-x root/root 54892 2021-01-02 15:28 ./usr/bin/bgzip -rwxr-xr-x root/root 317064 2021-01-02 15:28 ./usr/bin/htsfile -rwxr-xr-x root/root 321156 2021-01-02 15:28 ./usr/bin/tabix drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/doc/tabix/ -rw-r--r-- root/root 5605 2021-01-02 15:28 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 20093 2020-09-22 12:15 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5817 2020-02-13 18:25 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-02 15:28 ./usr/share/man/man1/ -rw-r--r-- root/root 2604 2021-01-02 15:28 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1918 2021-01-02 15:28 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3319 2021-01-02 15:28 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [576 B] Get:5 copy:/<>/apt_archive ./ Packages [663 B] Fetched 2202 B in 0s (88.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7568 kB of archives. After this operation, 21.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.0-1 [796 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b6 [38.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 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http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-2 [53.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7568 kB in 0s (26.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21203 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.0-1) ... Selecting previously unselected package gpg. 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Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.05-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-9) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 55452 Build-Time: 302 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 37 Job: htslib_1.11-4 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 350 Source-Version: 1.11-4 Space: 55452 Status: successful Version: 1.11-4 -------------------------------------------------------------------------------- Finished at 2021-01-05T13:01:15Z Build needed 00:05:50, 55452k disk space