sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.13+ds-2 (armhf) Sun, 28 Aug 2022 20:43:19 +0000 | +==============================================================================+ Package: htslib Version: 1.13+ds-2 Source Version: 1.13+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-5b71ca28-59f3-4946-9e08-85d3308b5d47' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-WSZ1pD/resolver-NvViSl' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [192 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-08-28-1407.21-F-2022-08-27-2008.31.pdiff [32.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-08-28-1407.21-F-2022-08-27-2008.31.pdiff [26.7 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-08-28-1407.21-F-2022-08-27-2008.31.pdiff [32.3 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [8952 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-08-28-1407.21-F-2022-08-27-2008.31.pdiff [26.7 kB] Fetched 9330 kB in 3s (3610 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsystemd0 libudev1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 594 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libsystemd0 amd64 251.4-3 [410 kB] Get:2 http://localhost:3142/debian sid/main amd64 libudev1 amd64 251.4-3 [184 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 594 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13634 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.4-3_amd64.deb ... Unpacking libsystemd0:amd64 (251.4-3) over (251.4-2) ... Setting up libsystemd0:amd64 (251.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13634 files and directories currently installed.) Preparing to unpack .../libudev1_251.4-3_amd64.deb ... Unpacking libudev1:amd64 (251.4-3) over (251.4-2) ... Setting up libudev1:amd64 (251.4-3) ... Processing triggers for libc-bin (2.34-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1390 kB of source archives. Get:1 http://localhost:3142/debian sid/main htslib 1.13+ds-2 (dsc) [2446 B] Get:2 http://localhost:3142/debian sid/main htslib 1.13+ds-2 (tar) [1370 kB] Get:3 http://localhost:3142/debian sid/main htslib 1.13+ds-2 (diff) [17.5 kB] Fetched 1390 kB in 6s (238 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-WSZ1pD/htslib-1.13+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-WSZ1pD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [460 B] Get:5 copy:/<>/apt_archive ./ Packages [548 B] Fetched 1965 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdevmapper1.02.1 libelf1 libfdisk1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhtscodecs-dev:armhf libhtscodecs2:armhf libicu71 libidn2-0:armhf libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1:armhf libssl-dev:armhf libssl3:armhf libstdc++-12-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtasn1-6:armhf libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils systemd ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libcurl4-doc:armhf libgnutls28-dev:armhf libidn11-dev:armhf libkrb5-dev:armhf libldap2-dev:armhf librtmp-dev:armhf libssh2-1-dev:armhf pkg-config:armhf gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf libssl-doc:armhf libstdc++-12-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 policykit-1 Recommended packages: curl | wget | lynx bzip2-doc:armhf ca-certificates:armhf libarchive-cpio-perl krb5-locales:armhf libldap-common:armhf publicsuffix:armhf libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libdevmapper1.02.1 libelf1 libfdisk1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhtscodecs-dev:armhf libhtscodecs2:armhf libicu71 libidn2-0:armhf libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1:armhf libssl-dev:armhf libssl3:armhf libstdc++-12-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtasn1-6:armhf libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils systemd ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 374 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://localhost:3142/debian sid/main amd64 libargon2-1 amd64 0~20171227-0.3 [20.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 dmsetup amd64 2:1.02.185-1 [92.7 kB] Get:4 http://localhost:3142/debian sid/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-1 [143 kB] Get:5 http://localhost:3142/debian sid/main amd64 libjson-c5 amd64 0.16-1 [44.0 kB] Get:6 http://localhost:3142/debian sid/main amd64 libcryptsetup12 amd64 2:2.5.0-2 [256 kB] Get:7 http://localhost:3142/debian sid/main amd64 libfdisk1 amd64 2.38.1-1 [250 kB] Get:8 http://localhost:3142/debian sid/main amd64 libkmod2 amd64 30+20220630-3 [59.6 kB] Get:9 http://localhost:3142/debian sid/main amd64 libapparmor1 amd64 3.0.7-1 [103 kB] Get:10 http://localhost:3142/debian sid/main amd64 libip4tc2 amd64 1.8.8-1 [34.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libsystemd-shared amd64 251.4-3 [1698 kB] Get:12 http://localhost:3142/debian sid/main amd64 systemd amd64 251.4-3 [2901 kB] Get:13 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:16 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:17 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:18 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:19 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:20 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:21 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1 [145 kB] Get:22 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-2 [39.4 kB] Get:23 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-2 [1413 kB] Get:24 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:25 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:26 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:27 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:28 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:29 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:30 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.38.90.20220713-2 [3174 kB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf-base amd64 12.2.0-1cross1 [208 kB] Get:32 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [8667 kB] Get:33 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:12.1.0-3 [17.1 kB] Get:34 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-1cross1 [203 kB] Get:36 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.34-3cross1 [1073 kB] Get:37 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 12.2.0-1cross1 [36.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 12.2.0-1cross1 [94.8 kB] Get:39 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 12.2.0-1cross1 [6768 B] Get:40 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 12.2.0-1cross1 [2113 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 12.2.0-1cross1 [477 kB] Get:42 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 12.2.0-1cross1 [855 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armhf-cross all 12.2.0-1cross1 [742 kB] Get:44 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [17.0 MB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:12.1.0-3 [1460 B] Get:46 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 5.18.16-1cross1 [1703 kB] Get:47 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.34-3cross1 [1411 kB] Get:48 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armhf-cross all 12.2.0-1cross1 [2036 kB] Get:49 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [9597 kB] Get:50 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:12.1.0-3 [1180 B] Get:51 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:54 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:55 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:57 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:58 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:59 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:60 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:64 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:67 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.9 [195 kB] Get:68 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:69 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:71 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:72 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:73 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:74 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-1 [179 kB] Get:75 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:77 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:78 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:79 http://localhost:3142/debian sid/main amd64 debhelper all 13.9 [1070 kB] Get:80 http://localhost:3142/debian sid/main amd64 dh-exec amd64 0.27 [27.8 kB] Get:81 http://localhost:3142/debian sid/main armhf gcc-12-base armhf 12.2.0-1 [208 kB] Get:82 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 12.2.0-1 [36.6 kB] Get:83 http://localhost:3142/debian sid/main armhf libc6 armhf 2.34-7 [2388 kB] Get:84 http://localhost:3142/debian sid/main armhf libasan8 armhf 12.2.0-1 [2114 kB] Get:85 http://localhost:3142/debian sid/main armhf libatomic1 armhf 12.2.0-1 [6992 B] Get:86 http://localhost:3142/debian sid/main armhf libbrotli1 armhf 1.0.9-2+b4 [272 kB] Get:87 http://localhost:3142/debian sid/main armhf libbz2-1.0 armhf 1.0.8-5 [43.4 kB] Get:88 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 5.18.16-1 [1580 kB] Get:89 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.28-2 [96.2 kB] Get:90 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.28-2 [125 kB] Get:91 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.46.5-2 [74.8 kB] Get:92 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20-1 [62.8 kB] Get:93 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20-1 [108 kB] Get:94 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-1 [14.7 kB] Get:95 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.5-2 [1678 kB] Get:96 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20-1 [320 kB] Get:97 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20-1 [144 kB] Get:98 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB] Get:99 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:100 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB] Get:101 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:102 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.34-7 [1446 kB] Get:103 http://localhost:3142/debian sid/main armhf libbz2-dev armhf 1.0.8-5 [27.6 kB] Get:104 http://localhost:3142/debian sid/main armhf libgmp10 armhf 2:6.2.1+dfsg1-1 [514 kB] Get:105 http://localhost:3142/debian sid/main armhf libnettle8 armhf 3.8.1-2 [296 kB] Get:106 http://localhost:3142/debian sid/main armhf libhogweed6 armhf 3.8.1-2 [315 kB] Get:107 http://localhost:3142/debian sid/main armhf libunistring2 armhf 1.0-1 [397 kB] Get:108 http://localhost:3142/debian sid/main armhf libidn2-0 armhf 2.3.3-1 [120 kB] Get:109 http://localhost:3142/debian sid/main armhf libffi8 armhf 3.4.2-4 [21.3 kB] Get:110 http://localhost:3142/debian sid/main armhf libp11-kit0 armhf 0.24.1-1 [326 kB] Get:111 http://localhost:3142/debian sid/main armhf libtasn1-6 armhf 4.18.0-4 [51.0 kB] Get:112 http://localhost:3142/debian sid/main armhf libgnutls30 armhf 3.7.7-2 [1332 kB] Get:113 http://localhost:3142/debian sid/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.10 [595 kB] Get:114 http://localhost:3142/debian sid/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-7 [37.2 kB] Get:115 http://localhost:3142/debian sid/main armhf libsasl2-2 armhf 2.1.28+dfsg-7 [70.6 kB] Get:116 http://localhost:3142/debian sid/main armhf libldap-2.5-0 armhf 2.5.12+dfsg-2+b1 [201 kB] Get:117 http://localhost:3142/debian sid/main armhf libnghttp2-14 armhf 1.49.0-1 [70.0 kB] Get:118 http://localhost:3142/debian sid/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get:119 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.2.11.dfsg-4.1 [84.4 kB] Get:120 http://localhost:3142/debian sid/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get:121 http://localhost:3142/debian sid/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get:122 http://localhost:3142/debian sid/main armhf libzstd1 armhf 1.5.2+dfsg-1 [237 kB] Get:123 http://localhost:3142/debian sid/main armhf libcurl3-gnutls armhf 7.84.0-2 [319 kB] Get:124 http://localhost:3142/debian sid/main armhf libcurl4-gnutls-dev armhf 7.84.0-2 [422 kB] Get:125 http://localhost:3142/debian sid/main armhf libdeflate0 armhf 1.12-1 [59.6 kB] Get:126 http://localhost:3142/debian sid/main armhf libdeflate-dev armhf 1.12-1 [51.5 kB] Get:127 http://localhost:3142/debian sid/main armhf libgomp1 armhf 12.2.0-1 [97.0 kB] Get:128 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 12.2.0-1 [519 kB] Get:129 http://localhost:3142/debian sid/main armhf libubsan1 armhf 12.2.0-1 [856 kB] Get:130 http://localhost:3142/debian sid/main armhf libgcc-12-dev armhf 12.2.0-1 [742 kB] Get:131 http://localhost:3142/debian sid/main armhf libhtscodecs2 armhf 1.2.2-1 [53.1 kB] Get:132 http://localhost:3142/debian sid/main armhf libhtscodecs-dev armhf 1.2.2-1 [2570 kB] Get:133 http://localhost:3142/debian sid/main armhf liblzma5 armhf 5.2.5-2.1 [159 kB] Get:134 http://localhost:3142/debian sid/main armhf liblzma-dev armhf 5.2.5-2.1 [220 kB] Get:135 http://localhost:3142/debian sid/main armhf libssl-dev armhf 3.0.5-2 [2148 kB] Get:136 http://localhost:3142/debian sid/main armhf libstdc++-12-dev armhf 12.2.0-1 [2084 kB] Get:137 http://localhost:3142/debian sid/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [184 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 8s (12.3 MB/s) Selecting previously unselected package libargon2-1:amd64. (Reading database ... 13634 files and directories currently installed.) Preparing to unpack .../000-libargon2-1_0~20171227-0.3_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.3) ... Selecting previously unselected package dmsetup. Preparing to unpack .../001-dmsetup_2%3a1.02.185-1_amd64.deb ... Unpacking dmsetup (2:1.02.185-1) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../002-libdevmapper1.02.1_2%3a1.02.185-1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-1) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../003-libjson-c5_0.16-1_amd64.deb ... Unpacking libjson-c5:amd64 (0.16-1) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../004-libcryptsetup12_2%3a2.5.0-2_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.5.0-2) ... Selecting previously unselected package libfdisk1:amd64. Preparing to unpack .../005-libfdisk1_2.38.1-1_amd64.deb ... 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Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libip4tc2:amd64 (1.8.8-1) ... Setting up libpipeline1:amd64 (1.5.6-2) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libfile-which-perl (1.27-1) ... Setting up libapparmor1:amd64 (3.0.7-1) ... Setting up libc6-armhf-cross (2.34-3cross1) ... Setting up gcc-12-cross-base (12.2.0-1cross1) ... Setting up bsdextrautils (2.38.1-1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-s1-armhf-cross (12.2.0-1cross1) ... Setting up libargon2-1:amd64 (0~20171227-0.3) ... Setting up libdebhelper-perl (13.9) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:armhf (5.18.16-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libatomic1-armhf-cross (12.2.0-1cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:armhf (12.2.0-1) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libstdc++6-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf-base:amd64 (12.2.0-1cross1) ... Setting up linux-libc-dev-armhf-cross (5.18.16-1cross1) ... Setting up autopoint (0.21-9) ... Setting up libubsan1-armhf-cross (12.2.0-1cross1) ... Setting up autoconf (2.71-2) ... Setting up libfdisk1:amd64 (2.38.1-1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up binutils-arm-linux-gnueabihf (2.38.90.20220713-2) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libjson-c5:amd64 (0.16-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libkmod2:amd64 (30+20220630-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (12.2.0-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libasan8-armhf-cross (12.2.0-1cross1) ... Setting up gettext (0.21-9) ... Setting up libtool (2.4.7-4) ... Setting up libc6-dev-armhf-cross (2.34-3cross1) ... Setting up cpp-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libsystemd-shared:amd64 (251.4-3) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up libgcc-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-arm-linux-gnueabihf (4:12.1.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabihf (4:12.1.0-3) ... Setting up g++-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:12.1.0-3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-1) ... Setting up dmsetup (2:1.02.185-1) ... Setting up libcryptsetup12:amd64 (2:2.5.0-2) ... Setting up systemd (251.4-3) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libgcc-s1:armhf (12.2.0-1) ... Setting up libc6:armhf (2.34-7) ... Setting up libffi8:armhf (3.4.2-4) ... Setting up libasan8:armhf (12.2.0-1) ... Setting up libtasn1-6:armhf (4.18.0-4) ... Setting up libbz2-1.0:armhf (1.0.8-5) ... Setting up libdb5.3:armhf (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:armhf (12.2.0-1) ... Setting up libhtscodecs2:armhf (1.2.2-1) ... Setting up libzstd1:armhf (1.5.2+dfsg-1) ... Setting up libkeyutils1:armhf (1.6.3-1) ... Setting up liblzma5:armhf (5.2.5-2.1) ... Setting up libbrotli1:armhf (1.0.9-2+b4) ... Setting up libssl3:armhf (3.0.5-2) ... Setting up libnghttp2-14:armhf (1.49.0-1) ... Setting up libunistring2:armhf (1.0-1) ... Setting up libdeflate0:armhf (1.12-1) ... Setting up debhelper (13.9) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:armhf (1:4.4.28-2) ... Setting up dh-exec (0.27) ... Setting up libidn2-0:armhf (2.3.3-1) ... Setting up libcom-err2:armhf (1.46.5-2) ... Setting up libgomp1:armhf (12.2.0-1) ... Setting up libkrb5support0:armhf (1.20-1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-7) ... Setting up libhtscodecs-dev:armhf (1.2.2-1) ... Setting up libnettle8:armhf (3.8.1-2) ... Setting up libgmp10:armhf (2:6.2.1+dfsg1-1) ... Setting up libp11-kit0:armhf (0.24.1-1) ... Setting up libssl-dev:armhf (3.0.5-2) ... Setting up libatomic1:armhf (12.2.0-1) ... Setting up libk5crypto3:armhf (1.20-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-7) ... Setting up liblzma-dev:armhf (5.2.5-2.1) ... Setting up libubsan1:armhf (12.2.0-1) ... Setting up libcrypt-dev:armhf (1:4.4.28-2) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up libkrb5-3:armhf (1.20-1) ... Setting up libdeflate-dev:armhf (1.12-1) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up libhogweed6:armhf (3.8.1-2) ... Setting up libgnutls30:armhf (3.7.7-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgcc-12-dev:armhf (12.2.0-1) ... Setting up libgssapi-krb5-2:armhf (1.20-1) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up libldap-2.5-0:armhf (2.5.12+dfsg-2+b1) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libcurl3-gnutls:armhf (7.84.0-2) ... Setting up libcurl4-gnutls-dev:armhf (7.84.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.34-7) ... Setting up libbz2-dev:armhf (1.0.8-5) ... Setting up libstdc++-12-dev:armhf (12.2.0-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-11_11.3.0-5 g++-12_12.2.0-1 gcc-11_11.3.0-5 gcc-12_12.2.0-1 libc6-dev_2.34-7 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-armhf-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-armhf-cross_12.2.0-1cross1 linux-libc-dev_5.18.16-1 Package versions: adduser_3.128 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2 binutils-arm-linux-gnueabihf_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.1.0-3 cpp-11_11.3.0-5 cpp-12_12.2.0-1 cpp-12-arm-linux-gnueabihf_12.2.0-1cross1 cpp-arm-linux-gnueabihf_4:12.1.0-3 cross-config_2.6.18+nmu2 crossbuild-essential-armhf_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dmsetup_2:1.02.185-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3 g++-11_11.3.0-5 g++-12_12.2.0-1 g++-12-arm-linux-gnueabihf_12.2.0-1cross1 g++-arm-linux-gnueabihf_4:12.1.0-3 gcc_4:12.1.0-3 gcc-11_11.3.0-5 gcc-11-base_11.3.0-5 gcc-12_12.2.0-1 gcc-12-arm-linux-gnueabihf_12.2.0-1cross1 gcc-12-arm-linux-gnueabihf-base_12.2.0-1cross1 gcc-12-base_12.2.0-1 gcc-12-cross-base_12.2.0-1cross1 gcc-9-base_9.5.0-2 gcc-arm-linux-gnueabihf_4:12.1.0-3 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5 libasan8_12.2.0-1 libasan8-armhf-cross_12.2.0-1cross1 libatomic1_12.2.0-1 libatomic1-armhf-cross_12.2.0-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b4 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.34-7 libc-dev-bin_2.34-7 libc6_2.34-7 libc6-armhf-cross_2.34-3cross1 libc6-dev_2.34-7 libc6-dev-armhf-cross_2.34-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libcurl3-gnutls_7.84.0-2 libcurl4-gnutls-dev_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9 libelf1_0.187-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-5 libgcc-12-dev_12.2.0-1 libgcc-12-dev-armhf-cross_12.2.0-1cross1 libgcc-s1_12.2.0-1 libgcc-s1-armhf-cross_12.2.0-1cross1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1+b1 libgdbm6_1.23-1+b1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgomp1-armhf-cross_12.2.0-1cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhtscodecs-dev_1.2.2-1 libhtscodecs2_1.2.2-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.8-1 libisl23_0.25-1 libitm1_12.2.0-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libldap-2.5-0_2.5.12+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.5-2 libssl3_3.0.5-2 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-armhf-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-armhf-cross_12.2.0-1cross1 libsub-override-perl_0.09-3 libsystemd-shared_251.4-3 libsystemd0_251.4-3 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-5 libtsan2_12.2.0-1 libubsan1_12.2.0-1 libubsan1-armhf-cross_12.2.0-1cross1 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.16-1 linux-libc-dev-armhf-cross_5.18.16-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.4-3 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.13+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: ddbf6c55d6f7e6604f138940cd39ec4538367b97 1370305 htslib_1.13+ds.orig.tar.bz2 4c52a8680fab92d2553f0f79b9370fce56f9f7fd 17452 htslib_1.13+ds-2.debian.tar.xz Checksums-Sha256: dfbad417019169ef28eb3f34f232ece2a3be1442e09f4c968671667e9b2f6ab9 1370305 htslib_1.13+ds.orig.tar.bz2 e54ba83e51f91b81a8a736716224dc5db9884ea1945330c2fc1fe271eba12876 17452 htslib_1.13+ds-2.debian.tar.xz Files: 097a17f53eff9020d6f0474ba5889541 1370305 htslib_1.13+ds.orig.tar.bz2 5d0f30d085fe290b1ebd643c06f93e44 17452 htslib_1.13+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEpSu8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo2Ew//eMRmIMStBz83iaOWWJke+ghxjBHQ gmVWMadgNnfTTGTSw/AJivlUroHZnpqceIoAyoOrBgY2to88D+2sFPMptF/1tjmY tXI4R6sWptlHIdyNr9t9ozCqnxjMSVHSZKJgWPLtWbyIbqjN9jzEwrbsKDYrlshL RB4VUxx4cZSiLuip44C0euJ8zgPsEh61w9CRGIvOBrkrTCVVhBKUhNNY5c3EToIj nYUjYMxOHg4neMAC3EfKMtB/1sHWghGNgh68vVVIEAJwhbsy3RsitN6fHMjGdsMK VVm+eLkiTzuPs+zBmGcBEqKZbgcfeoQWMGusOc3AFRy5iNEOhwYaJ/9ABMzdVgEg vaI1rMl8A6BdgmknW3xvOwuGqBg5oD6Ixp0AoSY75eBdQXN9WvsLK0JOcEWT46Pz hkjdEii7qGC0EHGPPPsEyfXtDck193i8lpzznjsecySzvKTVcjr/ZU7IZ4NBgPeG +khy8IRUYrNtcq0A1RpkaXrxD0h3/gKNnk/SxXwWNNDkEWp2KdDzJEICHCYVBFv+ pAbVElH5/IOAEyD5WGhFVt4ZJl9DCesxPLV9lFC1au/qTS6mGTNwsUpsiWAFfrcB 4uWAIz85NybheUS+BM9iSEkwunjFUdOCRqLtLrIEp6W8zbt9SEiNIdwL7nh7hd+R ziRVBK5yOancmwE= =8P4p -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.IcrB4Xia/trustedkeys.kbx': General error gpgv: Signature made Fri Aug 27 20:28:31 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./htslib_1.13+ds-2.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.13+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.13+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying disable_plugin_loading_test.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-5b71ca28-59f3-4946-9e08-85d3308b5d47 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.13+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from htslib-1.13+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/htslib-1.13\+ds/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_kfunc test/test_kstring test/test_realn test/test-regidx test/test_str2int test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir='/htslib' --with-external-htscodecs --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:' install -d /<>/htslib-1.13\+ds/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib: configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for arm-linux-gnueabihf-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking shared library type for arm-linux-gnueabihf... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for arm-linux-gnueabihf-gcc options needed to detect all undeclared functions... none needed checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.13+ds" \ libdir=/usr/lib/arm-linux-gnueabihf make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.13\+ds libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/<>' arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.13+ds"' > version.h echo '#define HTS_CC "arm-linux-gnueabihf-gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2"' >> config_vars.h echo '#define HTS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LIBS "-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm "' >> config_vars.h arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o arm-linux-gnueabihf-ranlib libhts.a arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:\" -fPIC -c -o plugin.pico plugin.c arm-linux-gnueabihf-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 13 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information ln -sf libhts.so libhts.so.3 arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c arm-linux-gnueabihf-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c arm-linux-gnueabihf-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c arm-linux-gnueabihf-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c arm-linux-gnueabihf-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 8 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the ‘-flto’ option documentation for more information arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c arm-linux-gnueabihf-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.13+ds" \ libdir=/usr/lib/arm-linux-gnueabihf install -d /<>/htslib-1.13\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.13\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -fvisibility=hidden -flto -fvisibility=hidden" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -Wl,-flto -fvisibility=hidden" PACKAGE_VERSION=1.13\+ds libdir=/usr/lib/arm-linux-gnueabihf make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/arm-linux-gnueabihf /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig if test -n "/htslib"; then mkdir -p -m 755 /<>/debian/tmp/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.1.13+ds ln -sf libhts.so.1.13+ds /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so ln -sf libhts.so.1.13+ds /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/arm-linux-gnueabihf#g;s#@-PACKAGE_VERSION@#1.13+ds#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts3/usr/lib/arm-linux-gnueabihf cp --reflink=auto -a ./debian/tmp/htslib debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so.3 debian/libhts3/usr/lib/arm-linux-gnueabihf/ install -d debian/libhts3/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts3 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.a debian/tmp/usr/lib/arm-linux-gnueabihf/libhts.so debian/libhts-dev/usr/lib/arm-linux-gnueabihf/ install -d debian/libhts-dev/usr/lib/arm-linux-gnueabihf/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/arm-linux-gnueabihf/pkgconfig/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/libhts3/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.3 ln -s libhts.so.1.13\+ds debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.3 rm -f debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so ln -s libhts.so.1.13\+ds debian/libhts-dev/usr/lib/arm-linux-gnueabihf/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -d debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug -- debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds dwz: debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13+ds: DWARF compression not beneficial - old size 816899 new size 828661 arm-linux-gnueabihf-objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug install -d debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix arm-linux-gnueabihf-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c7 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c7/d617e25de081a40415ec80cfa7bb4c3bc42849.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c7/d617e25de081a40415ec80cfa7bb4c3bc42849.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c7/d617e25de081a40415ec80cfa7bb4c3bc42849.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cc arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cc/26de0af8cf3e3b8ec6ed0b7db9137ad25b4708.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cc/26de0af8cf3e3b8ec6ed0b7db9137ad25b4708.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/cc/26de0af8cf3e3b8ec6ed0b7db9137ad25b4708.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/5d65bb336e19f4c65b2a532cb5a011ea7e7601.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/5d65bb336e19f4c65b2a532cb5a011ea7e7601.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ee/5d65bb336e19f4c65b2a532cb5a011ea7e7601.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/32b505e45c1deb46e2f44f55b888c407091f9b.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/32b505e45c1deb46e2f44f55b888c407091f9b.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/32b505e45c1deb46e2f44f55b888c407091f9b.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/69 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/69/7df5d0aaec0cbe720e815584cd3ae2aa109daf.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/69/7df5d0aaec0cbe720e815584cd3ae2aa109daf.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/69/7df5d0aaec0cbe720e815584cd3ae2aa109daf.debug debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/7f7856e4632943898a38f84804eebb8b0d1199.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/7f7856e4632943898a38f84804eebb8b0d1199.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/ef/7f7856e4632943898a38f84804eebb8b0d1199.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b6 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b6/1a95753be87d4963e7b682850a1f9b052f6d7e.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b6/1a95753be87d4963e7b682850a1f9b052f6d7e.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b6/1a95753be87d4963e7b682850a1f9b052f6d7e.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/46 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/46/3082033cde3aa2c7f3bddde604d456fd627b5b.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/46/3082033cde3aa2c7f3bddde604d456fd627b5b.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/46/3082033cde3aa2c7f3bddde604d456fd627b5b.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3/DEBIAN/shlibs install -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.13+ds)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/arm-linux-gnueabihf/libhts.so.1.13\+ds debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so debian/libhts3/usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=697df5d0aaec0cbe720e815584cd3ae2aa109daf a432b505e45c1deb46e2f44f55b888c407091f9b c7d617e25de081a40415ec80cfa7bb4c3bc42849 cc26de0af8cf3e3b8ec6ed0b7db9137ad25b4708 ee5d65bb336e19f4c65b2a532cb5a011ea7e7601" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=463082033cde3aa2c7f3bddde604d456fd627b5b b61a95753be87d4963e7b682850a1f9b052f6d7e ef7f7856e4632943898a38f84804eebb8b0d1199" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.13+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.13+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.13+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.13+ds-2_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.13+ds-2_armhf.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.13+ds-2_armhf.buildinfo dpkg-genchanges --build=any -O../htslib_1.13+ds-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.13+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-28T20:47:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.13+ds-2_armhf.changes: ------------------------------- Format: 1.8 Date: Fri, 27 Aug 2021 22:02:59 +0200 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.13+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.13+ds-2) unstable; urgency=medium . * d/control: add myself to uploaders * d/control: libhts-dev breaks samtools (<< 1.13~) * d/control: refresh libhts-dev Breaks+Replaces * d/control: libhts-dev breaks ivar (<< 1.3.1~) Checksums-Sha1: 5ae0b1e3954a1ec9a20bb989de5cc41029bf538f 7045 htslib_1.13+ds-2_armhf.buildinfo c58158baac9eca37127df7c1310fc236377bd201 3989936 libhts-dev_1.13+ds-2_armhf.deb 5998d17ee69ff4a66259f1cbb86c92f5eb65eb8c 1129568 libhts3-dbgsym_1.13+ds-2_armhf.deb 50d3b1d910f08e491e350c506c912c6ff5148ea7 348548 libhts3_1.13+ds-2_armhf.deb eb9984b73d42fac2e8e09d24581fb0100283b343 1436388 tabix-dbgsym_1.13+ds-2_armhf.deb 76ac81d2fba030fe422749422da0f5fd8db4974e 318112 tabix_1.13+ds-2_armhf.deb Checksums-Sha256: 94533ae18dd0986a6479f3e3ab29c813526767d598c266668e08f5749ee12e99 7045 htslib_1.13+ds-2_armhf.buildinfo 210f0966f94b3381ce2586e2cef31a7b64118ed6e7e1a1fd114abc0939a56ddc 3989936 libhts-dev_1.13+ds-2_armhf.deb c0b54616c0a3d59b8f913cbaf404e1edb025990539b64895e10b493500ae735d 1129568 libhts3-dbgsym_1.13+ds-2_armhf.deb e309a18561829da32330600408383c7e37d343c4f590d4af374fa528da528274 348548 libhts3_1.13+ds-2_armhf.deb 54c79c2303447126419c43f00e2564c888c90906f1571ebdd0b97d0d5b85a9fb 1436388 tabix-dbgsym_1.13+ds-2_armhf.deb b4731dd12fd38ea74338c851c22fe57ea75707cef7f272e4dc053c5480769692 318112 tabix_1.13+ds-2_armhf.deb Files: e5f017d0c44b0e00f7d712ce3387fca0 7045 science optional htslib_1.13+ds-2_armhf.buildinfo e34299bfa6cc65a1b65b6fe7b1c9ad86 3989936 libdevel optional libhts-dev_1.13+ds-2_armhf.deb d10440c2dfc358e27e4fbec787cc5d68 1129568 debug optional libhts3-dbgsym_1.13+ds-2_armhf.deb 1a88e53a9a13746fd3b8411fbb99e9ba 348548 libs optional libhts3_1.13+ds-2_armhf.deb 6f60583b0d4eab2889ea8d38ed1b8a3b 1436388 debug optional tabix-dbgsym_1.13+ds-2_armhf.deb 1d585970881a36bc8e644e637a5e1d6e 318112 science optional tabix_1.13+ds-2_armhf.deb /<>/htslib_1.13+ds-2_armhf.changes.new could not be renamed to /<>/htslib_1.13+ds-2_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Architecture: armhf Version: 1.13+ds-2 Checksums-Md5: e34299bfa6cc65a1b65b6fe7b1c9ad86 3989936 libhts-dev_1.13+ds-2_armhf.deb d10440c2dfc358e27e4fbec787cc5d68 1129568 libhts3-dbgsym_1.13+ds-2_armhf.deb 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54c79c2303447126419c43f00e2564c888c90906f1571ebdd0b97d0d5b85a9fb 1436388 tabix-dbgsym_1.13+ds-2_armhf.deb b4731dd12fd38ea74338c851c22fe57ea75707cef7f272e4dc053c5480769692 318112 tabix_1.13+ds-2_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 28 Aug 2022 20:47:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2), binutils (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), binutils-x86-64-linux-gnu (= 2.38.90.20220713-2), bsdextrautils (= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:12.1.0-3), cpp-11 (= 11.3.0-5), cpp-12 (= 12.2.0-1), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.9), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-exec (= 0.27), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dmsetup (= 2:1.02.185-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.1.0-3), g++-12 (= 12.2.0-1), gcc (= 4:12.1.0-3), gcc-11 (= 11.3.0-5), gcc-11-base (= 11.3.0-5), gcc-12 (= 12.2.0-1), gcc-12-base (= 12.2.0-1), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan6 (= 11.3.0-5), libasan8 (= 12.2.0-1), libatomic1 (= 12.2.0-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38.1-1), libbrotli1 (= 1.0.9-2+b4), libbz2-1.0 (= 1.0.8-5), libbz2-dev (= 1.0.8-5), libc-bin (= 2.34-7), libc-dev-bin (= 2.34-7), libc6 (= 2.34-7), libc6-dev (= 2.34-7), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libcurl3-gnutls (= 7.84.0-2), libcurl4-gnutls-dev (= 7.84.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9), libdeflate-dev (= 1.12-1), libdeflate0 (= 1.12-1), libdevmapper1.02.1 (= 2:1.02.185-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-1), libfdisk1 (= 2.38.1-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5), libgcc-12-dev (= 12.2.0-1), libgcc-s1 (= 12.2.0-1), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1+b1), libgdbm6 (= 1.23-1+b1), libgmp10 (= 2:6.2.1+dfsg1-1), libgnutls30 (= 3.7.7-2), libgomp1 (= 12.2.0-1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.8.1-2), libhtscodecs-dev (= 1.2.2-1), libhtscodecs2 (= 1.2.2-1), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libip4tc2 (= 1.8.8-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), libldap-2.5-0 (= 2.5.12+dfsg-2+b1), liblsan0 (= 12.2.0-1), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-7), libsasl2-modules-db (= 2.1.28+dfsg-7), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsmartcols1 (= 2.38.1-1), libssh2-1 (= 1.10.0-3+b1), libssl-dev (= 3.0.5-2), libssl3 (= 3.0.5-2), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-3), libsystemd0 (= 251.4-3), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.16-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), mount (= 2.38.1-1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sgml-base (= 1.30), systemd (= 251.4-3), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1630094579" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.13+ds-2_armhf.deb ------------------------------ new Debian package, version 2.0. size 3989936 bytes: control archive=1988 bytes. 1213 bytes, 27 lines control 2353 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.13+ds-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 5067 Depends: libhts3 (= 1.13+ds-2), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2021-08-27 20:02 ./ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/include/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/include/htslib/ -rw-r--r-- root/root 16081 2020-09-16 10:17 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 16837 2021-02-03 10:22 ./usr/include/htslib/cram.h -rw-r--r-- root/root 12934 2020-09-16 10:17 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 12877 2021-06-22 11:24 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 55006 2021-07-07 17:18 ./usr/include/htslib/hts.h -rw-r--r-- root/root 3989 2020-07-17 12:01 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11485 2020-05-14 09:28 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 3760 2020-11-30 16:43 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3944 2019-10-01 23:06 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2533 2021-02-03 10:22 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22899 2020-09-16 10:17 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 09:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3362 2021-02-03 10:22 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 11:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 8916 2021-05-05 17:01 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11480 2019-11-19 11:20 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11090 2020-09-29 19:51 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 14:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 79223 2021-06-22 11:24 ./usr/include/htslib/sam.h -rw-r--r-- root/root 15920 2021-04-20 09:42 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4942 2020-07-29 14:09 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 10:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 62511 2021-02-10 11:27 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 12:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 10:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 4708916 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/libhts.a lrwxrwxrwx root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/libhts.so -> libhts.so.1.13+ds drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 645 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 10:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2021-08-27 20:02 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 5871 2021-08-27 20:02 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 24123 2021-07-07 17:18 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2021-08-27 20:02 ./usr/share/doc/libhts-dev/copyright libhts3-dbgsym_1.13+ds-2_armhf.deb ---------------------------------- new Debian package, version 2.0. size 1129568 bytes: control archive=816 bytes. 555 bytes, 13 lines control 617 bytes, 6 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.13+ds-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1243 Depends: libhts3 (= 1.13+ds-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 697df5d0aaec0cbe720e815584cd3ae2aa109daf a432b505e45c1deb46e2f44f55b888c407091f9b c7d617e25de081a40415ec80cfa7bb4c3bc42849 cc26de0af8cf3e3b8ec6ed0b7db9137ad25b4708 ee5d65bb336e19f4c65b2a532cb5a011ea7e7601 drwxr-xr-x root/root 0 2021-08-27 20:02 ./ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/69/ -rw-r--r-- root/root 13512 2021-08-27 20:02 ./usr/lib/debug/.build-id/69/7df5d0aaec0cbe720e815584cd3ae2aa109daf.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 38812 2021-08-27 20:02 ./usr/lib/debug/.build-id/a4/32b505e45c1deb46e2f44f55b888c407091f9b.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 1119296 2021-08-27 20:02 ./usr/lib/debug/.build-id/c7/d617e25de081a40415ec80cfa7bb4c3bc42849.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/cc/ -rw-r--r-- root/root 24088 2021-08-27 20:02 ./usr/lib/debug/.build-id/cc/26de0af8cf3e3b8ec6ed0b7db9137ad25b4708.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/ee/ -rw-r--r-- root/root 45220 2021-08-27 20:02 ./usr/lib/debug/.build-id/ee/5d65bb336e19f4c65b2a532cb5a011ea7e7601.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 12252 2021-08-27 20:02 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/libhts3.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-27 20:02 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.13+ds-2_armhf.deb --------------------------- new Debian package, version 2.0. size 348548 bytes: control archive=3996 bytes. 1247 bytes, 23 lines control 890 bytes, 12 lines md5sums 30 bytes, 1 lines shlibs 14553 bytes, 544 lines symbols 65 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.13+ds-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 854 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.1.1), liblzma5 (>= 5.1.1alpha+20120614), libssl3 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libtabixpp (<< 1.0.0-5~), python3-pysam (<< 0.15~), samtools (<< 1.13~) Replaces: libhts-dev (<< 1.13~) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2021-08-27 20:02 ./ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/htslib/ -rw-r--r-- root/root 67008 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_gcs.so -rw-r--r-- root/root 67008 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_libcurl.so -rw-r--r-- root/root 67008 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_s3.so -rw-r--r-- root/root 67008 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/htslib/hfile_s3_write.so -rw-r--r-- root/root 525744 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/libhts.so.1.13+ds lrwxrwxrwx root/root 0 2021-08-27 20:02 ./usr/lib/arm-linux-gnueabihf/libhts.so.3 -> libhts.so.1.13+ds drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 5871 2021-08-27 20:02 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 24123 2021-07-07 17:18 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5897 2021-08-27 20:02 ./usr/share/doc/libhts3/copyright drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2021-08-27 20:02 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2021-08-27 20:02 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2021-08-27 20:02 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/man/man7/ -rw-r--r-- root/root 2167 2021-08-27 20:02 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.13+ds-2_armhf.deb -------------------------------- new Debian package, version 2.0. size 1436388 bytes: control archive=700 bytes. 450 bytes, 12 lines control 403 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.13+ds-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1600 Depends: tabix (= 1.13+ds-2) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 463082033cde3aa2c7f3bddde604d456fd627b5b b61a95753be87d4963e7b682850a1f9b052f6d7e ef7f7856e4632943898a38f84804eebb8b0d1199 drwxr-xr-x root/root 0 2021-08-27 20:02 ./ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 119808 2021-08-27 20:02 ./usr/lib/debug/.build-id/46/3082033cde3aa2c7f3bddde604d456fd627b5b.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/b6/ -rw-r--r-- root/root 688872 2021-08-27 20:02 ./usr/lib/debug/.build-id/b6/1a95753be87d4963e7b682850a1f9b052f6d7e.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.build-id/ef/ -rw-r--r-- root/root 688112 2021-08-27 20:02 ./usr/lib/debug/.build-id/ef/7f7856e4632943898a38f84804eebb8b0d1199.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 126056 2021-08-27 20:02 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tabix.debug drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-27 20:02 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.13+ds-2_armhf.deb ------------------------- new Debian package, version 2.0. size 318112 bytes: control archive=1128 bytes. 982 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.13+ds-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 828 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2021-08-27 20:02 ./ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/bin/ -rwxr-xr-x root/root 67180 2021-08-27 20:02 ./usr/bin/bgzip -rwxr-xr-x root/root 329352 2021-08-27 20:02 ./usr/bin/htsfile -rwxr-xr-x root/root 394884 2021-08-27 20:02 ./usr/bin/tabix drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/doc/tabix/ -rw-r--r-- root/root 5871 2021-08-27 20:02 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 24123 2021-07-07 17:18 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2021-08-27 20:02 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-27 20:02 ./usr/share/man/man1/ -rw-r--r-- root/root 2602 2021-08-27 20:02 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1915 2021-08-27 20:02 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3318 2021-08-27 20:02 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [589 B] Get:5 copy:/<>/apt_archive ./ Packages [681 B] Fetched 2233 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After this operation, 52.0 MB of additional disk space will be used. 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libnumber-compare-perl all 0.03-2 [7448 B] Get:65 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:66 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:70 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:71 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:72 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:75 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:76 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:77 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:78 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:79 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:80 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2 [343 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:82 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:84 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:85 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:86 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:87 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:88 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:89 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:90 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:92 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:93 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:94 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:95 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-3 [18.8 kB] Get:98 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:100 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:101 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:102 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:103 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-2 [11.9 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2 [13.7 kB] Get:107 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:108 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:109 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1 [17.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:111 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:112 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 4.025+ds-1 [103 kB] Get:114 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 4.025+ds-1 [104 kB] Get:115 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:116 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.25-1 [53.3 kB] Get:117 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:118 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2 [27.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5 [8656 B] Get:120 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:122 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:123 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2 [73.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:125 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:126 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:127 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB] Get:128 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:129 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:130 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:131 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:132 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:133 http://localhost:3142/debian sid/main amd64 lintian all 2.115.2 [1416 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 0s (110 MB/s) Selecting previously unselected package netbase. (Reading database ... 20950 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2~rc2-2_all.deb ... Unpacking readline-common (8.2~rc2-2) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.5-2_amd64.deb ... Unpacking openssl (3.0.5-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-4_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-4) ... Selecting previously unselected package libreadline8:amd64. 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Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-1+b2) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:amd64 (3.39.2-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:amd64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:amd64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:amd64 (0.26-2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-4) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-2) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-2) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up readline-common (8.2~rc2-2) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.2~rc2-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.78-1) ... Setting up gpgconf (2.2.35-3) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up gpg (2.2.35-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Processing triggers for libc-bin (2.34-7) ... Processing triggers for man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for sgml-base (1.30) ... Setting up lintian (2.115.2) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 57896 Build-Time: 229 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 20 Job: htslib_1.13+ds-2 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 266 Source-Version: 1.13+ds-2 Space: 57896 Status: successful Version: 1.13+ds-2 -------------------------------------------------------------------------------- Finished at 2022-08-28T20:47:45Z Build needed 00:04:26, 57896k disk space