sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.16+ds-2 (s390x) Sun, 02 Oct 2022 22:14:39 +0000 | +==============================================================================+ Package: htslib Version: 1.16+ds-2 Source Version: 1.16+ds-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-597477cb-284c-48e9-9946-59a0ba9a5a92' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-pTosmY/resolver-nfB3Bs' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [158 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-02-1403.08-F-2022-10-01-2009.15.pdiff [73.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-02-1403.08-F-2022-10-01-2009.15.pdiff [74.3 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-02-1403.08-F-2022-10-01-2009.15.pdiff [73.3 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-02-1403.08-F-2022-10-01-2009.15.pdiff [74.3 kB] Get:6 http://localhost:3142/debian sid/main s390x Packages [8929 kB] Fetched 9361 kB in 3s (3334 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1404 kB of source archives. Get:1 http://localhost:3142/debian sid/main htslib 1.16+ds-2 (dsc) [2442 B] Get:2 http://localhost:3142/debian sid/main htslib 1.16+ds-2 (tar) [1382 kB] Get:3 http://localhost:3142/debian sid/main htslib 1.16+ds-2 (diff) [19.5 kB] Fetched 1404 kB in 0s (112 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-pTosmY/htslib-1.16+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-pTosmY' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [459 B] Get:5 copy:/<>/apt_archive ./ Packages [549 B] Fetched 1965 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-12-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++-12-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-12-base:s390x gcc-12-cross-base gcc-12-s390x-linux-gnu gcc-12-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-12-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libicu71 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle8:s390x libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1:s390x libssl-dev:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-12-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-s390x-linux-gnu gcc-12-doc gcc-12-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x libcurl4-doc:s390x libgnutls28-dev:s390x libidn11-dev:s390x libkrb5-dev:s390x libldap2-dev:s390x librtmp-dev:s390x libssh2-1-dev:s390x pkg-config:s390x gnutls-bin:s390x krb5-doc:s390x krb5-user:s390x liblzma-doc:s390x libssl-doc:s390x libstdc++-11-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:s390x ca-certificates:s390x libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x publicsuffix:s390x libsasl2-modules:s390x libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils cpp-12-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dpkg-cross dwz file g++-12-s390x-linux-gnu g++-s390x-linux-gnu gcc-11-base:s390x gcc-12-base:s390x gcc-12-cross-base gcc-12-s390x-linux-gnu gcc-12-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:s390x libcrypt1:s390x libcurl3-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3:s390x libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:s390x libdeflate0:s390x libelf1 libffi8:s390x libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:s390x libgcc-12-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libhogweed6:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libicu71 libidn2-0:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5support0:s390x libldap-2.5-0:s390x liblocale-gettext-perl liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1 libnettle8:s390x libnghttp2-14:s390x libnsl-dev:s390x libnsl2:s390x libp11-kit0:s390x libpipeline1 libpsl5:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1:s390x libssl-dev:s390x libssl3:s390x libstdc++-11-dev:s390x libstdc++-12-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtasn1-6:s390x libtirpc-dev:s390x libtirpc3:s390x libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunistring2:s390x libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:s390x linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 92.7 MB of archives. After this operation, 345 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1 [145 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-3 [1413 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-s390x-linux-gnu amd64 2.39-6 [2419 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-s390x-linux-gnu-base amd64 12.2.0-3cross2 [208 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-s390x-linux-gnu amd64 12.2.0-3cross2 [7795 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-s390x-linux-gnu amd64 4:12.2.0-1 [17.1 kB] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-3cross2 [204 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-s390x-cross all 2.35-1cross1 [1212 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-s390x-cross all 12.2.0-3cross2 [25.1 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-s390x-cross all 12.2.0-3cross2 [103 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-s390x-cross all 12.2.0-3cross2 [24.8 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-s390x-cross all 12.2.0-3cross2 [7808 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-s390x-cross all 12.2.0-3cross2 [2068 kB] Get:31 http://localhost:3142/debian sid/main amd64 libstdc++6-s390x-cross all 12.2.0-3cross2 [571 kB] Get:32 http://localhost:3142/debian sid/main amd64 libubsan1-s390x-cross all 12.2.0-3cross2 [851 kB] Get:33 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-s390x-cross all 12.2.0-3cross2 [716 kB] Get:34 http://localhost:3142/debian sid/main amd64 gcc-12-s390x-linux-gnu amd64 12.2.0-3cross2 [15.4 MB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-s390x-linux-gnu amd64 4:12.2.0-1 [1448 B] Get:36 http://localhost:3142/debian sid/main amd64 linux-libc-dev-s390x-cross all 5.19.6-1cross1 [1751 kB] Get:37 http://localhost:3142/debian sid/main amd64 libc6-dev-s390x-cross all 2.35-1cross1 [1577 kB] Get:38 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-s390x-cross all 12.2.0-3cross2 [1997 kB] Get:39 http://localhost:3142/debian sid/main amd64 g++-12-s390x-linux-gnu amd64 12.2.0-3cross2 [8718 kB] Get:40 http://localhost:3142/debian sid/main amd64 g++-s390x-linux-gnu amd64 4:12.2.0-1 [1168 B] Get:41 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:50 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:53 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:55 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:56 http://localhost:3142/debian sid/main amd64 crossbuild-essential-s390x all 12.9 [6704 B] Get:57 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.9.1 [196 kB] Get:58 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:59 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:61 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:64 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:65 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:66 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:67 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:69 http://localhost:3142/debian sid/main amd64 debhelper all 13.9.1 [1071 kB] Get:70 http://localhost:3142/debian sid/main amd64 dh-exec amd64 0.27 [27.8 kB] Get:71 http://localhost:3142/debian sid/main s390x gcc-11-base s390x 11.3.0-6 [209 kB] Get:72 http://localhost:3142/debian sid/main s390x gcc-12-base s390x 12.2.0-3 [208 kB] Get:73 http://localhost:3142/debian sid/main s390x libgcc-s1 s390x 12.2.0-3 [25.1 kB] Get:74 http://localhost:3142/debian sid/main s390x libc6 s390x 2.35-1 [2448 kB] Get:75 http://localhost:3142/debian sid/main s390x libasan6 s390x 11.3.0-6 [1927 kB] Get:76 http://localhost:3142/debian sid/main s390x libatomic1 s390x 12.2.0-3 [8060 B] Get:77 http://localhost:3142/debian sid/main s390x libbrotli1 s390x 1.0.9-2+b4 [264 kB] Get:78 http://localhost:3142/debian sid/main s390x libbz2-1.0 s390x 1.0.8-5+b1 [46.8 kB] Get:79 http://localhost:3142/debian sid/main s390x linux-libc-dev s390x 5.19.11-1 [1633 kB] Get:80 http://localhost:3142/debian sid/main s390x libcrypt1 s390x 1:4.4.28-2 [90.1 kB] Get:81 http://localhost:3142/debian sid/main s390x libcrypt-dev s390x 1:4.4.28-2 [118 kB] Get:82 http://localhost:3142/debian sid/main s390x libcom-err2 s390x 1.46.6~rc1-1 [75.6 kB] Get:83 http://localhost:3142/debian sid/main s390x libkrb5support0 s390x 1.20-1 [64.8 kB] Get:84 http://localhost:3142/debian sid/main s390x libk5crypto3 s390x 1.20-1 [110 kB] Get:85 http://localhost:3142/debian sid/main s390x libkeyutils1 s390x 1.6.3-1 [15.4 kB] Get:86 http://localhost:3142/debian sid/main s390x libssl3 s390x 3.0.5-4 [1629 kB] Get:87 http://localhost:3142/debian sid/main s390x libkrb5-3 s390x 1.20-1 [342 kB] Get:88 http://localhost:3142/debian sid/main s390x libgssapi-krb5-2 s390x 1.20-1 [155 kB] Get:89 http://localhost:3142/debian sid/main s390x libtirpc3 s390x 1.3.3+ds-1 [78.4 kB] Get:90 http://localhost:3142/debian sid/main s390x libnsl2 s390x 1.3.0-2 [37.3 kB] Get:91 http://localhost:3142/debian sid/main s390x libtirpc-dev s390x 1.3.3+ds-1 [185 kB] Get:92 http://localhost:3142/debian sid/main s390x libnsl-dev s390x 1.3.0-2 [64.6 kB] Get:93 http://localhost:3142/debian sid/main s390x libc6-dev s390x 2.35-1 [1592 kB] Get:94 http://localhost:3142/debian sid/main s390x libbz2-dev s390x 1.0.8-5+b1 [30.6 kB] Get:95 http://localhost:3142/debian sid/main s390x libgmp10 s390x 2:6.2.1+dfsg1-1 [551 kB] Get:96 http://localhost:3142/debian sid/main s390x libnettle8 s390x 3.8.1-2 [297 kB] Get:97 http://localhost:3142/debian sid/main s390x libhogweed6 s390x 3.8.1-2 [325 kB] Get:98 http://localhost:3142/debian sid/main s390x libunistring2 s390x 1.0-1 [409 kB] Get:99 http://localhost:3142/debian sid/main s390x libidn2-0 s390x 2.3.3-1+b1 [121 kB] Get:100 http://localhost:3142/debian sid/main s390x libffi8 s390x 3.4.3-2 [22.8 kB] Get:101 http://localhost:3142/debian sid/main s390x libp11-kit0 s390x 0.24.1-1 [345 kB] Get:102 http://localhost:3142/debian sid/main s390x libtasn1-6 s390x 4.19.0-2 [53.7 kB] Get:103 http://localhost:3142/debian sid/main s390x libgnutls30 s390x 3.7.7-2 [1294 kB] Get:104 http://localhost:3142/debian sid/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.10 [619 kB] Get:105 http://localhost:3142/debian sid/main s390x libsasl2-modules-db s390x 2.1.28+dfsg-8 [37.8 kB] Get:106 http://localhost:3142/debian sid/main s390x libsasl2-2 s390x 2.1.28+dfsg-8 [74.5 kB] Get:107 http://localhost:3142/debian sid/main s390x libldap-2.5-0 s390x 2.5.13+dfsg-2 [217 kB] Get:108 http://localhost:3142/debian sid/main s390x libnghttp2-14 s390x 1.50.0-1 [71.3 kB] Get:109 http://localhost:3142/debian sid/main s390x libpsl5 s390x 0.21.0-1.2 [57.1 kB] Get:110 http://localhost:3142/debian sid/main s390x zlib1g s390x 1:1.2.11.dfsg-4.1 [89.4 kB] Get:111 http://localhost:3142/debian sid/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2+b2 [56.5 kB] Get:112 http://localhost:3142/debian sid/main s390x libssh2-1 s390x 1.10.0-3+b1 [169 kB] Get:113 http://localhost:3142/debian sid/main s390x libzstd1 s390x 1.5.2+dfsg-1 [244 kB] Get:114 http://localhost:3142/debian sid/main s390x libcurl3-gnutls s390x 7.85.0-1 [337 kB] Get:115 http://localhost:3142/debian sid/main s390x libcurl4-gnutls-dev s390x 7.85.0-1 [435 kB] Get:116 http://localhost:3142/debian sid/main s390x libdeflate0 s390x 1.12-1 [59.6 kB] Get:117 http://localhost:3142/debian sid/main s390x libdeflate-dev s390x 1.12-1 [49.4 kB] Get:118 http://localhost:3142/debian sid/main s390x libgomp1 s390x 12.2.0-3 [105 kB] Get:119 http://localhost:3142/debian sid/main s390x libitm1 s390x 12.2.0-3 [25.2 kB] Get:120 http://localhost:3142/debian sid/main s390x libstdc++6 s390x 12.2.0-3 [613 kB] Get:121 http://localhost:3142/debian sid/main s390x libubsan1 s390x 12.2.0-3 [851 kB] Get:122 http://localhost:3142/debian sid/main s390x libgcc-11-dev s390x 11.3.0-6 [691 kB] Get:123 http://localhost:3142/debian sid/main s390x libhtscodecs2 s390x 1.3.0-3 [68.6 kB] Get:124 http://localhost:3142/debian sid/main s390x libhtscodecs-dev s390x 1.3.0-3 [2846 kB] Get:125 http://localhost:3142/debian sid/main s390x liblzma5 s390x 5.2.5-2.1 [166 kB] Get:126 http://localhost:3142/debian sid/main s390x liblzma-dev s390x 5.2.5-2.1 [227 kB] Get:127 http://localhost:3142/debian sid/main s390x libssl-dev s390x 3.0.5-4 [2048 kB] Get:128 http://localhost:3142/debian sid/main s390x libstdc++-11-dev s390x 11.3.0-6 [1929 kB] Get:129 http://localhost:3142/debian sid/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-4.1 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.7 MB in 9s (9792 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13652 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-9_amd64.deb ... Unpacking gettext-base (0.21-9) ... 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Unpacking libssl3:s390x (3.0.5-4) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../085-libkrb5-3_1.20-1_s390x.deb ... Unpacking libkrb5-3:s390x (1.20-1) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../086-libgssapi-krb5-2_1.20-1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.20-1) ... Selecting previously unselected package libtirpc3:s390x. Preparing to unpack .../087-libtirpc3_1.3.3+ds-1_s390x.deb ... Unpacking libtirpc3:s390x (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:s390x. Preparing to unpack .../088-libnsl2_1.3.0-2_s390x.deb ... Unpacking libnsl2:s390x (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:s390x. Preparing to unpack .../089-libtirpc-dev_1.3.3+ds-1_s390x.deb ... Unpacking libtirpc-dev:s390x (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:s390x. Preparing to unpack .../090-libnsl-dev_1.3.0-2_s390x.deb ... 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Unpacking libunistring2:s390x (1.0-1) ... Selecting previously unselected package libidn2-0:s390x. Preparing to unpack .../097-libidn2-0_2.3.3-1+b1_s390x.deb ... Unpacking libidn2-0:s390x (2.3.3-1+b1) ... Selecting previously unselected package libffi8:s390x. Preparing to unpack .../098-libffi8_3.4.3-2_s390x.deb ... Unpacking libffi8:s390x (3.4.3-2) ... Selecting previously unselected package libp11-kit0:s390x. Preparing to unpack .../099-libp11-kit0_0.24.1-1_s390x.deb ... Unpacking libp11-kit0:s390x (0.24.1-1) ... Selecting previously unselected package libtasn1-6:s390x. Preparing to unpack .../100-libtasn1-6_4.19.0-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.19.0-2) ... Selecting previously unselected package libgnutls30:s390x. Preparing to unpack .../101-libgnutls30_3.7.7-2_s390x.deb ... Unpacking libgnutls30:s390x (3.7.7-2) ... Selecting previously unselected package libdb5.3:s390x. Preparing to unpack .../102-libdb5.3_5.3.28+dfsg1-0.10_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg1-0.10) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../103-libsasl2-modules-db_2.1.28+dfsg-8_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg-8) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../104-libsasl2-2_2.1.28+dfsg-8_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.28+dfsg-8) ... Selecting previously unselected package libldap-2.5-0:s390x. Preparing to unpack .../105-libldap-2.5-0_2.5.13+dfsg-2_s390x.deb ... Unpacking libldap-2.5-0:s390x (2.5.13+dfsg-2) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../106-libnghttp2-14_1.50.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.50.0-1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../107-libpsl5_0.21.0-1.2_s390x.deb ... Unpacking libpsl5:s390x (0.21.0-1.2) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../108-zlib1g_1%3a1.2.11.dfsg-4.1_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../109-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:s390x. Preparing to unpack .../110-libssh2-1_1.10.0-3+b1_s390x.deb ... Unpacking libssh2-1:s390x (1.10.0-3+b1) ... Selecting previously unselected package libzstd1:s390x. Preparing to unpack .../111-libzstd1_1.5.2+dfsg-1_s390x.deb ... Unpacking libzstd1:s390x (1.5.2+dfsg-1) ... Selecting previously unselected package libcurl3-gnutls:s390x. Preparing to unpack .../112-libcurl3-gnutls_7.85.0-1_s390x.deb ... Unpacking libcurl3-gnutls:s390x (7.85.0-1) ... Selecting previously unselected package libcurl4-gnutls-dev:s390x. Preparing to unpack .../113-libcurl4-gnutls-dev_7.85.0-1_s390x.deb ... Unpacking libcurl4-gnutls-dev:s390x (7.85.0-1) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../114-libdeflate0_1.12-1_s390x.deb ... Unpacking libdeflate0:s390x (1.12-1) ... Selecting previously unselected package libdeflate-dev:s390x. Preparing to unpack .../115-libdeflate-dev_1.12-1_s390x.deb ... Unpacking libdeflate-dev:s390x (1.12-1) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../116-libgomp1_12.2.0-3_s390x.deb ... Unpacking libgomp1:s390x (12.2.0-3) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../117-libitm1_12.2.0-3_s390x.deb ... Unpacking libitm1:s390x (12.2.0-3) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../118-libstdc++6_12.2.0-3_s390x.deb ... Unpacking libstdc++6:s390x (12.2.0-3) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../119-libubsan1_12.2.0-3_s390x.deb ... Unpacking libubsan1:s390x (12.2.0-3) ... Selecting previously unselected package libgcc-11-dev:s390x. Preparing to unpack .../120-libgcc-11-dev_11.3.0-6_s390x.deb ... Unpacking libgcc-11-dev:s390x (11.3.0-6) ... Selecting previously unselected package libhtscodecs2:s390x. Preparing to unpack .../121-libhtscodecs2_1.3.0-3_s390x.deb ... Unpacking libhtscodecs2:s390x (1.3.0-3) ... Selecting previously unselected package libhtscodecs-dev:s390x. Preparing to unpack .../122-libhtscodecs-dev_1.3.0-3_s390x.deb ... Unpacking libhtscodecs-dev:s390x (1.3.0-3) ... Selecting previously unselected package liblzma5:s390x. Preparing to unpack .../123-liblzma5_5.2.5-2.1_s390x.deb ... Unpacking liblzma5:s390x (5.2.5-2.1) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../124-liblzma-dev_5.2.5-2.1_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.5-2.1) ... Selecting previously unselected package libssl-dev:s390x. Preparing to unpack .../125-libssl-dev_3.0.5-4_s390x.deb ... Unpacking libssl-dev:s390x (3.0.5-4) ... Selecting previously unselected package libstdc++-11-dev:s390x. Preparing to unpack .../126-libstdc++-11-dev_11.3.0-6_s390x.deb ... Unpacking libstdc++-11-dev:s390x (11.3.0-6) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../127-zlib1g-dev_1%3a1.2.11.dfsg-4.1_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:s390x. Preparing to unpack .../128-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.6-3) ... Setting up libicu71:amd64 (71.1-3) ... Setting up gcc-11-base:s390x (11.3.0-6) ... Setting up libfile-which-perl (1.27-1) ... Setting up gcc-12-s390x-linux-gnu-base:amd64 (12.2.0-3cross2) ... Setting up binutils-s390x-linux-gnu (2.39-6) ... Setting up gcc-12-cross-base (12.2.0-3cross2) ... Setting up bsdextrautils (2.38.1-1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.9.1) ... Setting up libc6-s390x-cross (2.35-1cross1) ... Setting up libatomic1-s390x-cross (12.2.0-3cross2) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:s390x (5.19.11-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:s390x (12.2.0-3) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-s390x-cross (5.19.6-1cross1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up autopoint (0.21-9) ... Setting up libgcc-s1-s390x-cross (12.2.0-3cross2) ... Setting up autoconf (2.71-2) ... Setting up libitm1-s390x-cross (12.2.0-3cross2) ... Setting up sensible-utils (0.0.17) ... Setting up libc6-dev-s390x-cross (2.35-1cross1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up libgomp1-s390x-cross (12.2.0-3cross2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up cpp-12-s390x-linux-gnu (12.2.0-3cross2) ... Setting up gettext (0.21-9) ... Setting up cpp-s390x-linux-gnu (4:12.2.0-1) ... Setting up libtool (2.4.7-4) ... Setting up libstdc++6-s390x-cross (12.2.0-3cross2) ... Setting up libasan8-s390x-cross (12.2.0-3cross2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up libubsan1-s390x-cross (12.2.0-3cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up libgcc-12-dev-s390x-cross (12.2.0-3cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up libstdc++-12-dev-s390x-cross (12.2.0-3cross2) ... Setting up debhelper (13.9.1) ... Setting up dh-exec (0.27) ... Setting up gcc-12-s390x-linux-gnu (12.2.0-3cross2) ... Setting up gcc-s390x-linux-gnu (4:12.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-s390x-linux-gnu (12.2.0-3cross2) ... Setting up g++-s390x-linux-gnu (4:12.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-s390x (12.9) ... Setting up libgcc-s1:s390x (12.2.0-3) ... Setting up libc6:s390x (2.35-1) ... Setting up libffi8:s390x (3.4.3-2) ... Setting up libtasn1-6:s390x (4.19.0-2) ... Setting up libbz2-1.0:s390x (1.0.8-5+b1) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:s390x (12.2.0-3) ... Setting up libitm1:s390x (12.2.0-3) ... Setting up libhtscodecs2:s390x (1.3.0-3) ... Setting up libzstd1:s390x (1.5.2+dfsg-1) ... Setting up libkeyutils1:s390x (1.6.3-1) ... Setting up liblzma5:s390x (5.2.5-2.1) ... Setting up libbrotli1:s390x (1.0.9-2+b4) ... Setting up libssl3:s390x (3.0.5-4) ... Setting up libnghttp2-14:s390x (1.50.0-1) ... Setting up libunistring2:s390x (1.0-1) ... Setting up libdeflate0:s390x (1.12-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:s390x (1:4.4.28-2) ... Setting up libidn2-0:s390x (2.3.3-1+b1) ... Setting up libcom-err2:s390x (1.46.6~rc1-1) ... Setting up libgomp1:s390x (12.2.0-3) ... Setting up libasan6:s390x (11.3.0-6) ... Setting up libkrb5support0:s390x (1.20-1) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg-8) ... Setting up libhtscodecs-dev:s390x (1.3.0-3) ... Setting up libnettle8:s390x (3.8.1-2) ... Setting up libgmp10:s390x (2:6.2.1+dfsg1-1) ... Setting up libp11-kit0:s390x (0.24.1-1) ... Setting up libssl-dev:s390x (3.0.5-4) ... Setting up libatomic1:s390x (12.2.0-3) ... Setting up libk5crypto3:s390x (1.20-1) ... Setting up libsasl2-2:s390x (2.1.28+dfsg-8) ... Setting up liblzma-dev:s390x (5.2.5-2.1) ... Setting up libubsan1:s390x (12.2.0-3) ... Setting up libgcc-11-dev:s390x (11.3.0-6) ... Setting up libcrypt-dev:s390x (1:4.4.28-2) ... Setting up libssh2-1:s390x (1.10.0-3+b1) ... Setting up libkrb5-3:s390x (1.20-1) ... Setting up libdeflate-dev:s390x (1.12-1) ... Setting up libpsl5:s390x (0.21.0-1.2) ... Setting up libhogweed6:s390x (3.8.1-2) ... Setting up libgnutls30:s390x (3.7.7-2) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:s390x (1.20-1) ... Setting up libtirpc3:s390x (1.3.3+ds-1) ... Setting up libldap-2.5-0:s390x (2.5.13+dfsg-2) ... Setting up libtirpc-dev:s390x (1.3.3+ds-1) ... Setting up libnsl2:s390x (1.3.0-2) ... Setting up libcurl3-gnutls:s390x (7.85.0-1) ... Setting up libcurl4-gnutls-dev:s390x (7.85.0-1) ... Setting up libnsl-dev:s390x (1.3.0-2) ... Setting up libc6-dev:s390x (2.35-1) ... Setting up libbz2-dev:s390x (1.0.8-5+b1) ... Setting up libstdc++-11-dev:s390x (11.3.0-6) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-4.1) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.35-1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-6 dpkg-dev_1.21.9 g++-11_11.3.0-6 g++-12_12.2.0-3 gcc-11_11.3.0-6 gcc-12_12.2.0-3 libc6-dev_2.35-1 libstdc++-11-dev_11.3.0-6 libstdc++-12-dev_12.2.0-3 libstdc++-12-dev-s390x-cross_12.2.0-3cross2 libstdc++6_12.2.0-3 libstdc++6-s390x-cross_12.2.0-3cross2 linux-libc-dev_5.19.11-1 Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.1 bash_5.2-1 binutils_2.39-6 binutils-common_2.39-6 binutils-s390x-linux-gnu_2.39-6 binutils-x86-64-linux-gnu_2.39-6 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-6 cpp-12_12.2.0-3 cpp-12-s390x-linux-gnu_12.2.0-3cross2 cpp-s390x-linux-gnu_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-s390x_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-6 g++-12_12.2.0-3 g++-12-s390x-linux-gnu_12.2.0-3cross2 g++-s390x-linux-gnu_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-6 gcc-11-base_11.3.0-6 gcc-12_12.2.0-3 gcc-12-base_12.2.0-3 gcc-12-cross-base_12.2.0-3cross2 gcc-12-s390x-linux-gnu_12.2.0-3cross2 gcc-12-s390x-linux-gnu-base_12.2.0-3cross2 gcc-9-base_9.5.0-2+b1 gcc-s390x-linux-gnu_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.39-1 grep_3.8-2 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan6_11.3.0-6 libasan8_12.2.0-3 libasan8-s390x-cross_12.2.0-3cross2 libatomic1_12.2.0-3 libatomic1-s390x-cross_12.2.0-3cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b4 libbz2-1.0_1.0.8-5+b1 libbz2-dev_1.0.8-5+b1 libc-bin_2.35-1 libc-dev-bin_2.35-1 libc6_2.35-1 libc6-dev_2.35-1 libc6-dev-s390x-cross_2.35-1cross1 libc6-s390x-cross_2.35-1cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-3 libcom-err2_1.46.6~rc1-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6 libctf0_2.39-6 libcurl3-gnutls_7.85.0-1 libcurl4-gnutls-dev_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdpkg-perl_1.21.9 libelf1_0.187-4 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.3-2 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-6 libgcc-12-dev_12.2.0-3 libgcc-12-dev-s390x-cross_12.2.0-3cross2 libgcc-s1_12.2.0-3 libgcc-s1-s390x-cross_12.2.0-3cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-3 libgomp1-s390x-cross_12.2.0-3cross2 libgpg-error0_1.45-2 libgprofng0_2.39-6 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhtscodecs-dev_1.3.0-3 libhtscodecs2_1.3.0-3 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-3 libitm1-s390x-cross_12.2.0-3cross2 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libldap-2.5-0_2.5.13+dfsg-2 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-3 liblz4-1_1.9.4-1 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.5-4 libssl3_3.0.5-4 libstdc++-11-dev_11.3.0-6 libstdc++-12-dev_12.2.0-3 libstdc++-12-dev-s390x-cross_12.2.0-3cross2 libstdc++6_12.2.0-3 libstdc++6-s390x-cross_12.2.0-3cross2 libsub-override-perl_0.09-3 libsystemd0_251.4-3 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-6 libtsan2_12.2.0-3 libubsan1_12.2.0-3 libubsan1-s390x-cross_12.2.0-3cross2 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.11-1 linux-libc-dev-s390x-cross_5.19.6-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.6~rc1-1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 usrmerge_32 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.16+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 13), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 4beb8a41c7233271d2143f6603ee06b8e9910dc2 1382243 htslib_1.16+ds.orig.tar.bz2 bc0f4d8dd4e02a9c21df55c28e42f59f13547169 19528 htslib_1.16+ds-2.debian.tar.xz Checksums-Sha256: 2d10941e47cf0c05d1496e73e2beaef39e7584eb326367476b12cad04e7794be 1382243 htslib_1.16+ds.orig.tar.bz2 1b62725af8fa842182f33811a24f2a19ca92e65be905c2c65865ad4e78eec4c9 19528 htslib_1.16+ds-2.debian.tar.xz Files: 1b69fb302f02b8e8a0219496abde89d8 1382243 htslib_1.16+ds.orig.tar.bz2 fda2762d55b8a5aa3af24cd03b633b41 19528 htslib_1.16+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmM30XcSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxVNgP/0hTqL9oFyHZUyGJtHwd3AO9E9WOym6y vSciBlTVoKf70YA+mbEFa2/sLFpxqdagv1vzmQSS9li87r+qRGyy1Z2wEweirgQ1 CGgSKW7SnLav5pkgkuBOfAEzsFxubdcjquoHT9BwTP4yS6HUq650KbVU2RxJAeGy 6bqkAl+hv0AUHjxVBv67htSWj1iu4ByZJLk82uSL3uODyUeO/fjMeIjSgfQe7CNX bBSje4qqXhQi8Z8IoHKoDd5er07aiztgh17VzWGVFEQjTbXTX6fZKdAKUld/mauL pSxghD2TSLtK2xslffepC8LOr9m9t6g+ySMZu/AH3IihOsUMySh5mG8CeNhLdDr2 TrTSlyFi717+avyXuQnAyi6JPnbAS/TSic1o2LcU8oKLD/tRSp2OFG0GYhw4GTve 3wIDEVSqV3/su2+P3zicJ23XPKwAwFzLXd2nmIr0BoBiG5X8eAuXdlpMgZJQ7kGC PX0g/TCEYLcaaYOjmVFKqJxZxfVdbCigUpRCnAWfQlEa6beKXUR7fRYA9gVVvonL Ork78yLx3K7SdHD5uBLuugOBhQ/GZVToi/DOlHKav2HjTn2p4mAwM10SdVWMsrvC +I8kSIA3akLFwtxuz954P1cIYITjD1Ph8PHYNlehTB00jN52rfHs9B5vpdOxXGAp FtPUalFeCV89 =JL+J -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.cABIWp59/trustedkeys.kbx': General error gpgv: Signature made Sat Oct 1 05:34:47 2022 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./htslib_1.16+ds-2.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.16+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.16+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying disable_plugin_loading_test.patch dpkg-source: info: applying fix_sequence_of_linked_libs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-597477cb-284c-48e9-9946-59a0ba9a5a92 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.16+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from htslib-1.16+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/htslib-1.16\+ds/debian/.debhelper/generated/_source/home make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_kfunc test/test_kstring test/test_mod test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes && autoconf && \ dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir='/htslib' --with-external-htscodecs --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:' install -d /<>/htslib-1.16\+ds/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib: configure: loading site script /etc/dpkg-cross/cross-config.s390x checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C11 features... none needed checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking whether C compiler accepts -mssse3 -mpopcnt -msse4.1... no checking whether C compiler accepts -mavx2... no checking whether C compiler accepts -mavx512f... no checking whether C compiler supports ARM Neon... no checking for s390x-linux-gnu-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for s390x-linux-gnu... plain .so checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for s390x-linux-gnu-gcc options needed to detect all undeclared functions... none needed checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.16" \ libdir=/usr/lib/s390x-linux-gnu make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects" PACKAGE_VERSION=1.16 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.16"' > version.h echo '#define HTS_CC "s390x-linux-gnu-gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2"' >> config_vars.h echo '#define HTS_CFLAGS "-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects"' >> config_vars.h echo '#define HTS_LIBS "-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm "' >> config_vars.h s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o s390x-linux-gnu-ranlib libhts.a s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:\" -fPIC -c -o plugin.pico plugin.c s390x-linux-gnu-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup_mod.o test/pileup_mod.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_time_funcs test/test_time_funcs.o s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.16" \ libdir=/usr/lib/s390x-linux-gnu install -d /<>/htslib-1.16\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.16\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -Wl,-flto -fvisibility=hidden -ffat-lto-objects" PACKAGE_VERSION=1.16 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/s390x-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig if test -n "/htslib"; then mkdir -p -m 755 /<>/debian/tmp/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.16 ln -sf libhts.so.1.16 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so ln -sf libhts.so.1.16 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/s390x-linux-gnu#g;s#@-PACKAGE_VERSION@#1.16#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts3/usr/lib/s390x-linux-gnu cp --reflink=auto -a ./debian/tmp/htslib debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.16 debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 debian/libhts3/usr/lib/s390x-linux-gnu/ install -d debian/libhts3/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts3 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libhts.a debian/tmp/usr/lib/s390x-linux-gnu/libhts.so debian/libhts-dev/usr/lib/s390x-linux-gnu/ install -d debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/libhts3/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 ln -s libhts.so.1.16 debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.3 rm -f debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so ln -s libhts.so.1.16 debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -d debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug -- debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 dwz: debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16: DWARF compression not beneficial - old size 892798 new size 910368 s390x-linux-gnu-objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug install -d debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu dwz -mdebian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3d s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3d/0e78a5abfefdf1745390f0363a5081a6295d97.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3d/0e78a5abfefdf1745390f0363a5081a6295d97.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/3d/0e78a5abfefdf1745390f0363a5081a6295d97.debug debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c8 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c8/b68e9a0cf2f03187910144caf78523b15b738c.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c8/b68e9a0cf2f03187910144caf78523b15b738c.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/c8/b68e9a0cf2f03187910144caf78523b15b738c.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ac s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ac/812111d140549947eb892e83a181c39d7e92d8.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ac/812111d140549947eb892e83a181c39d7e92d8.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ac/812111d140549947eb892e83a181c39d7e92d8.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/03 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/03/24caf8d3b26d54c0112baf7a894b583aeab274.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/03/24caf8d3b26d54c0112baf7a894b583aeab274.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/03/24caf8d3b26d54c0112baf7a894b583aeab274.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ba s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ba/01ae8cc65bf4e9910a9cfa97b40284ba745820.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ba/01ae8cc65bf4e9910a9cfa97b40284ba745820.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/ba/01ae8cc65bf4e9910a9cfa97b40284ba745820.debug debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so install -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/a5 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/a5/03b661a4518dcad09a92e4826b24e2e43e8725.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/a5/03b661a4518dcad09a92e4826b24e2e43e8725.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/a5/03b661a4518dcad09a92e4826b24e2e43e8725.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/3841a0fa54776f4e36943f0bf7a52f972572b5.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/3841a0fa54776f4e36943f0bf7a52f972572b5.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/3841a0fa54776f4e36943f0bf7a52f972572b5.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/11 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/11/41f504dba6176e6459f10595daf320440f68c0.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/11/41f504dba6176e6459f10595daf320440f68c0.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/11/41f504dba6176e6459f10595daf320440f68c0.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/s390x-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3/DEBIAN/shlibs install -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.16+ds)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/s390x-linux-gnu/libhts.so.1.16 debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so debian/libhts3/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -d debian/libhts-dev/DEBIAN dh_gencontrol -a echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=0324caf8d3b26d54c0112baf7a894b583aeab274 3d0e78a5abfefdf1745390f0363a5081a6295d97 ac812111d140549947eb892e83a181c39d7e92d8 ba01ae8cc65bf4e9910a9cfa97b40284ba745820 c8b68e9a0cf2f03187910144caf78523b15b738c" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=1141f504dba6176e6459f10595daf320440f68c0 443841a0fa54776f4e36943f0bf7a52f972572b5 a503b661a4518dcad09a92e4826b24e2e43e8725" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.16+ds-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.16+ds-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.16+ds-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.16+ds-2_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.16+ds-2_s390x.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.16+ds-2_s390x.buildinfo dpkg-genchanges --build=any -O../htslib_1.16+ds-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.16+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-10-02T22:16:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.16+ds-2_s390x.changes: ------------------------------- Format: 1.8 Date: Sat, 01 Oct 2022 11:01:03 +0530 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.16+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.16+ds-2) unstable; urgency=medium . * Team Upload. * Copy htslib.pc.in also to AUTOPKGTEST_TMP * Pass correct upstream version so as to not get the +ds non-sense in SOVERSIONS Checksums-Sha1: 1b862aaf65c8f36c5de02d95f21807d61ff70011 6745 htslib_1.16+ds-2_s390x.buildinfo c115381d7bfd111fa8bae7b8db1ff6e04fce6bd0 1495904 libhts-dev_1.16+ds-2_s390x.deb e6435494c2675627f9fa476a1f34b52162ccf4af 1165272 libhts3-dbgsym_1.16+ds-2_s390x.deb 521a5067b462287bc043bb613c430d01e6eb7951 393908 libhts3_1.16+ds-2_s390x.deb 7d61dbacbd37eed9c102accf9d3e1d5c1e0c76c4 2529836 tabix-dbgsym_1.16+ds-2_s390x.deb 7508187cfa29358a87d6558f57c7f9454e31c1c1 394764 tabix_1.16+ds-2_s390x.deb Checksums-Sha256: a0ba68251cdb3a86ed786b12487129a015450c6d8de4b4ee7c992cccb24cddf5 6745 htslib_1.16+ds-2_s390x.buildinfo 50c3a4a7be4a850befc57c83faa73d2f307fc0752c2a2fdce0a06033909774c6 1495904 libhts-dev_1.16+ds-2_s390x.deb 6a8a2eb11165bd79f3b038e3c9a6833439890ce02b4d199823330750f524430d 1165272 libhts3-dbgsym_1.16+ds-2_s390x.deb e969d58f55db43405cd3e119ab2007f57e91d91c3f510432c6be8797880e6255 393908 libhts3_1.16+ds-2_s390x.deb 12f0d0d820a01b321c33f98f6d1821b78a1fdbf63dd6557ec548677eb55d1365 2529836 tabix-dbgsym_1.16+ds-2_s390x.deb 84ff9bd357d7662cd37558f2bfb525ea63c874929493bf99acecaa7b382b0136 394764 tabix_1.16+ds-2_s390x.deb Files: 8f9c87bdf949d248f7b3ae9418e73e3a 6745 science optional htslib_1.16+ds-2_s390x.buildinfo f59b3e4414162337d28f4d79cf128343 1495904 libdevel optional libhts-dev_1.16+ds-2_s390x.deb 6c3cedf5a717a64416b8704b9deb465e 1165272 debug optional libhts3-dbgsym_1.16+ds-2_s390x.deb 541188790c63ecfa15809b8dd1116abf 393908 libs optional libhts3_1.16+ds-2_s390x.deb 365efa7dcf31598bf14fa1794f09a12b 2529836 debug optional tabix-dbgsym_1.16+ds-2_s390x.deb b61a8ff31cca28094986fca19e06477f 394764 science optional tabix_1.16+ds-2_s390x.deb /<>/htslib_1.16+ds-2_s390x.changes.new could not be renamed to /<>/htslib_1.16+ds-2_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | 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(= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-6), cpp-12 (= 12.2.0-3), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.9.1), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-exec (= 0.27), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-3), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-6), gcc-11-base (= 11.3.0-6), gcc-12 (= 12.2.0-3), gcc-12-base (= 12.2.0-3), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.8-2), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-6), libasan8 (= 12.2.0-3), libatomic1 (= 12.2.0-3), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1), libbinutils (= 2.39-6), libblkid1 (= 2.38.1-1), libbrotli1 (= 1.0.9-2+b4), libbz2-1.0 (= 1.0.8-5+b1), libbz2-dev (= 1.0.8-5+b1), libc-bin (= 2.35-1), libc-dev-bin (= 2.35-1), libc6 (= 2.35-1), libc6-dev (= 2.35-1), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-3), libcom-err2 (= 1.46.6~rc1-1), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-6), libctf0 (= 2.39-6), libcurl3-gnutls (= 7.85.0-1), libcurl4-gnutls-dev (= 7.85.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9.1), libdeflate-dev (= 1.12-1), libdeflate0 (= 1.12-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-4), libffi8 (= 3.4.3-2), libfile-find-rule-perl (= 0.34-2), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-6), libgcc-12-dev (= 12.2.0-3), libgcc-s1 (= 12.2.0-3), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-2), libgdbm6 (= 1.23-2), libgmp10 (= 2:6.2.1+dfsg1-1), libgnutls30 (= 3.7.7-2), libgomp1 (= 12.2.0-3), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.39-6), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.8.1-2), libhtscodecs-dev (= 1.3.0-3), libhtscodecs2 (= 1.3.0-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-3), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), libldap-2.5-0 (= 2.5.13+dfsg-2), liblsan0 (= 12.2.0-3), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-3), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-8), libsasl2-modules-db (= 2.1.28+dfsg-8), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b2), libsmartcols1 (= 2.38.1-1), libssh2-1 (= 1.10.0-3+b1), libssl-dev (= 3.0.5-4), libssl3 (= 3.0.5-4), libstdc++-12-dev (= 12.2.0-3), libstdc++6 (= 12.2.0-3), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.4-3), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-6), libtsan2 (= 12.2.0-3), libubsan1 (= 12.2.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.11-1), login (= 1:4.11.1+dfsg1-2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-3), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-6), tar (= 1.34+dfsg-1), usrmerge (= 32), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1664602263" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.16+ds-2_s390x.deb ------------------------------ new Debian package, version 2.0. size 1495904 bytes: control archive=1976 bytes. 1213 bytes, 27 lines control 2345 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.16+ds-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 6296 Depends: libhts3 (= 1.16+ds-2), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2022-10-01 05:31 ./ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/include/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/include/htslib/ -rw-r--r-- root/root 16453 2022-07-27 10:31 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 17961 2022-07-27 10:31 ./usr/include/htslib/cram.h -rw-r--r-- root/root 12934 2020-09-16 09:17 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 13351 2022-07-27 10:31 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 57362 2022-08-18 10:55 ./usr/include/htslib/hts.h -rw-r--r-- root/root 4010 2021-10-15 15:03 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11708 2022-08-12 11:26 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2022-07-14 09:33 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2022-05-13 15:25 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2022-01-11 12:11 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22899 2020-09-16 09:17 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2022-07-27 10:31 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 8916 2021-05-05 16:01 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11507 2022-08-16 10:42 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11462 2022-07-27 10:31 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 87719 2022-07-27 10:31 ./usr/include/htslib/sam.h -rw-r--r-- root/root 16293 2021-10-05 14:20 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4956 2022-05-13 15:25 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 66805 2022-08-13 21:16 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 5940412 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/libhts.so -> libhts.so.1.16 drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 674 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 09:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2022-10-01 03:24 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 6101 2022-10-01 05:31 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 29426 2022-08-18 10:55 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2022-10-01 03:24 ./usr/share/doc/libhts-dev/copyright libhts3-dbgsym_1.16+ds-2_s390x.deb ---------------------------------- new Debian package, version 2.0. size 1165272 bytes: control archive=816 bytes. 555 bytes, 13 lines control 613 bytes, 6 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.16+ds-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1234 Depends: libhts3 (= 1.16+ds-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 0324caf8d3b26d54c0112baf7a894b583aeab274 3d0e78a5abfefdf1745390f0363a5081a6295d97 ac812111d140549947eb892e83a181c39d7e92d8 ba01ae8cc65bf4e9910a9cfa97b40284ba745820 c8b68e9a0cf2f03187910144caf78523b15b738c drwxr-xr-x root/root 0 2022-10-01 05:31 ./ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/03/ -rw-r--r-- root/root 22848 2022-10-01 05:31 ./usr/lib/debug/.build-id/03/24caf8d3b26d54c0112baf7a894b583aeab274.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/3d/ -rw-r--r-- root/root 1108560 2022-10-01 05:31 ./usr/lib/debug/.build-id/3d/0e78a5abfefdf1745390f0363a5081a6295d97.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/ac/ -rw-r--r-- root/root 36600 2022-10-01 05:31 ./usr/lib/debug/.build-id/ac/812111d140549947eb892e83a181c39d7e92d8.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 13784 2022-10-01 05:31 ./usr/lib/debug/.build-id/ba/01ae8cc65bf4e9910a9cfa97b40284ba745820.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/c8/ -rw-r--r-- root/root 49304 2022-10-01 05:31 ./usr/lib/debug/.build-id/c8/b68e9a0cf2f03187910144caf78523b15b738c.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 12384 2022-10-01 05:31 ./usr/lib/debug/.dwz/s390x-linux-gnu/libhts3.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-01 05:31 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.16+ds-2_s390x.deb --------------------------- new Debian package, version 2.0. size 393908 bytes: control archive=5492 bytes. 1222 bytes, 23 lines control 867 bytes, 12 lines md5sums 30 bytes, 1 lines shlibs 24988 bytes, 882 lines symbols 67 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.16+ds-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1079 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libtabixpp (<< 1.0.0-5~), samtools (<< 1.13~) Replaces: libhts-dev (<< 1.13~) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2022-10-01 05:31 ./ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/htslib/ -rw-r--r-- root/root 10240 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so -rw-r--r-- root/root 30720 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so -rw-r--r-- root/root 34816 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/htslib/hfile_s3.so -rw-r--r-- root/root 18432 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/htslib/hfile_s3_write.so -rw-r--r-- root/root 915472 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/libhts.so.1.16 lrwxrwxrwx root/root 0 2022-10-01 05:31 ./usr/lib/s390x-linux-gnu/libhts.so.3 -> libhts.so.1.16 drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 6101 2022-10-01 05:31 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 29426 2022-08-18 10:55 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5897 2022-10-01 03:24 ./usr/share/doc/libhts3/copyright drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2022-10-01 05:31 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2022-10-01 05:31 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2022-10-01 05:31 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/man/man7/ -rw-r--r-- root/root 3418 2022-10-01 05:31 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.16+ds-2_s390x.deb -------------------------------- new Debian package, version 2.0. size 2529836 bytes: control archive=696 bytes. 450 bytes, 12 lines control 399 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.16+ds-2 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2642 Depends: tabix (= 1.16+ds-2) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 1141f504dba6176e6459f10595daf320440f68c0 443841a0fa54776f4e36943f0bf7a52f972572b5 a503b661a4518dcad09a92e4826b24e2e43e8725 drwxr-xr-x root/root 0 2022-10-01 05:31 ./ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/11/ -rw-r--r-- root/root 755520 2022-10-01 05:31 ./usr/lib/debug/.build-id/11/41f504dba6176e6459f10595daf320440f68c0.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 917440 2022-10-01 05:31 ./usr/lib/debug/.build-id/44/3841a0fa54776f4e36943f0bf7a52f972572b5.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.build-id/a5/ -rw-r--r-- root/root 941912 2022-10-01 05:31 ./usr/lib/debug/.build-id/a5/03b661a4518dcad09a92e4826b24e2e43e8725.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 75280 2022-10-01 05:31 ./usr/lib/debug/.dwz/s390x-linux-gnu/tabix.debug drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-01 05:31 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.16+ds-2_s390x.deb ------------------------- new Debian package, version 2.0. size 394764 bytes: control archive=1128 bytes. 985 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.16+ds-2 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2188 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2022-10-01 05:31 ./ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/bin/ -rwxr-xr-x root/root 637184 2022-10-01 05:31 ./usr/bin/bgzip -rwxr-xr-x root/root 760128 2022-10-01 05:31 ./usr/bin/htsfile -rwxr-xr-x root/root 780608 2022-10-01 05:31 ./usr/bin/tabix drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/doc/tabix/ -rw-r--r-- root/root 6101 2022-10-01 05:31 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 29426 2022-08-18 10:55 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2022-10-01 03:24 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-01 05:31 ./usr/share/man/man1/ -rw-r--r-- root/root 2663 2022-10-01 05:31 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1916 2022-10-01 05:31 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3341 2022-10-01 05:31 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [591 B] Get:5 copy:/<>/apt_archive ./ Packages [679 B] Fetched 2233 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After this operation, 51.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.3 [19.9 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1 [76.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.5-4 [1423 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-4 [51.3 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1 [173 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.39-1 [585 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.39.3-1 [844 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.39-1 [969 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.11.0-1 [2834 kB] 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http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:55 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-1 [32.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2 [104 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:58 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:59 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2 [25.8 kB] Get:60 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1 [29.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:62 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:67 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:68 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:75 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:77 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2 [343 kB] Get:78 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.075-1 [220 kB] Get:79 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:82 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:83 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:84 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:87 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:92 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-3 [18.8 kB] Get:95 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:98 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:99 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:100 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-2 [11.9 kB] Get:103 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2 [13.7 kB] Get:104 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:105 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.124-1 [56.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1 [17.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:109 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1 [103 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-1 [106 kB] Get:112 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:113 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.25-1 [53.3 kB] Get:114 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:115 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2 [27.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5 [8656 B] Get:117 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:120 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2 [73.0 kB] Get:121 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:122 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:124 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1 [36.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:126 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:127 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:128 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:129 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:130 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 0s (106 MB/s) Selecting previously unselected package netbase. (Reading database ... 20209 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1_all.deb ... Unpacking readline-common (8.2-1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.5-4_amd64.deb ... Unpacking openssl (3.0.5-4) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-4_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-4) ... Selecting previously unselected package libreadline8:amd64. 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Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-5) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:amd64 (3.39.3-1) ... 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Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.2-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.78-1) ... Setting up gpgconf (2.2.39-1) ... Setting up libio-socket-ssl-perl (2.075-1) ... Setting up gpg (2.2.39-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.35-1) ... Processing triggers for man-db (2.10.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 70820 Build-Time: 82 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 21 Job: htslib_1.16+ds-2 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 113 Source-Version: 1.16+ds-2 Space: 70820 Status: successful Version: 1.16+ds-2 -------------------------------------------------------------------------------- Finished at 2022-10-02T22:16:32Z Build needed 00:01:53, 70820k disk space