sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.18+ds-1 (mips64el) Tue, 23 Jan 2024 02:19:09 +0000 | +==============================================================================+ Package: htslib Version: 1.18+ds-1 Source Version: 1.18+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-085ceb46-d835-4e77-81d8-83380b7ff7b9' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-9Sr7ib/resolver-R6fgt9' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main mips64el Packages [9296 kB] Fetched 9296 kB in 1s (7597 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1492 kB of source archives. Get:1 http://localhost:3142/debian sid/main htslib 1.18+ds-1 (dsc) [2437 B] Get:2 http://localhost:3142/debian sid/main htslib 1.18+ds-1 (tar) [1469 kB] Get:3 http://localhost:3142/debian sid/main htslib 1.18+ds-1 (diff) [20.1 kB] Fetched 1492 kB in 2s (913 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-9Sr7ib/htslib-1.18+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-9Sr7ib' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [836 B] Get:5 copy:/<>/apt_archive ./ Packages [882 B] Fetched 2327 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1 libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libnettle8:mips64el libnghttp2-14:mips64el libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1:mips64el libssl-dev:mips64el libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el libssh2-1-dev:mips64el pkg-config:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libssl-doc:mips64el libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl krb5-locales:mips64el libldap-common:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1 libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libnettle8:mips64el libnghttp2-14:mips64el libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1:mips64el libssl-dev:mips64el libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 86.6 MB of archives. After this operation, 351 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [972 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.3-6 [89.4 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1+b2 [38.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.0-3 [1401 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.41.90.20240115-1cross5 [2777 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.3.0-6cross3 [40.1 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [8107 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.3.0-6cross3 [35.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-mipsen all 13.2.0-10cross1 [37.8 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.37-13cross1 [1055 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 13.2.0-10cross1 [75.4 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 13.2.0-10cross1 [111 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 13.2.0-10cross1 [7120 B] Get:30 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.3.0-6cross3 [294 kB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [16.0 MB] Get:32 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:33 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 13.2.0-10cross1 [568 kB] Get:34 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mips64el-cross all 6.6.11-1cross1 [2049 kB] Get:35 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.37-13cross1 [1574 kB] Get:36 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.3.0-6cross3 [2082 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [9041 kB] Get:38 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:39 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:40 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:41 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:48 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:52 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:53 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:54 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:55 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.10 [82.9 kB] Get:56 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:57 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:59 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:62 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:63 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:64 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:65 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:67 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.10 [882 kB] Get:68 http://localhost:3142/debian sid/main mips64el gcc-11-base mips64el 11.4.0-7 [40.3 kB] Get:69 http://localhost:3142/debian sid/main mips64el gcc-13-base mips64el 13.2.0-10 [42.2 kB] Get:70 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 13.2.0-10 [74.9 kB] Get:71 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.37-13 [2377 kB] Get:72 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 13.2.0-10 [7448 B] Get:73 http://localhost:3142/debian sid/main mips64el libbrotli1 mips64el 1.1.0-2+b3 [325 kB] Get:74 http://localhost:3142/debian sid/main mips64el libbz2-1.0 mips64el 1.0.8-5+b2 [39.4 kB] Get:75 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.36-4 [94.1 kB] Get:76 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.36-4 [127 kB] Get:77 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-5 [30.8 kB] Get:78 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.47.0-2+b1 [19.9 kB] Get:79 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-5 [84.9 kB] Get:80 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-2+b2 [8724 B] Get:81 http://localhost:3142/debian sid/main mips64el libssl3 mips64el 3.1.4-2 [1491 kB] Get:82 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-5 [296 kB] Get:83 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-5 [118 kB] Get:84 http://localhost:3142/debian sid/main mips64el libtirpc3 mips64el 1.3.4+ds-1 [71.8 kB] Get:85 http://localhost:3142/debian sid/main mips64el libnsl2 mips64el 1.3.0-3 [35.5 kB] Get:86 http://localhost:3142/debian sid/main mips64el libtirpc-dev mips64el 1.3.4+ds-1 [197 kB] Get:87 http://localhost:3142/debian sid/main mips64el libnsl-dev mips64el 1.3.0-3 [69.9 kB] Get:88 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.37-13 [1578 kB] Get:89 http://localhost:3142/debian sid/main mips64el libbz2-dev mips64el 1.0.8-5+b2 [34.0 kB] Get:90 http://localhost:3142/debian sid/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-2 [546 kB] Get:91 http://localhost:3142/debian sid/main mips64el libnettle8 mips64el 3.9.1-2 [301 kB] Get:92 http://localhost:3142/debian sid/main mips64el libhogweed6 mips64el 3.9.1-2 [318 kB] Get:93 http://localhost:3142/debian sid/main mips64el libunistring5 mips64el 1.1-2 [417 kB] Get:94 http://localhost:3142/debian sid/main mips64el libidn2-0 mips64el 2.3.4-1+b2 [123 kB] Get:95 http://localhost:3142/debian sid/main mips64el libffi8 mips64el 3.4.4-2 [23.3 kB] Get:96 http://localhost:3142/debian sid/main mips64el libp11-kit0 mips64el 0.25.3-4 [338 kB] Get:97 http://localhost:3142/debian sid/main mips64el libtasn1-6 mips64el 4.19.0-3+b2 [46.0 kB] Get:98 http://localhost:3142/debian sid/main mips64el libgnutls30 mips64el 3.8.3-1 [1248 kB] Get:99 http://localhost:3142/debian sid/main mips64el libdb5.3 mips64el 5.3.28+dfsg2-4+b1 [601 kB] Get:100 http://localhost:3142/debian sid/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg1-4+b1 [19.0 kB] Get:101 http://localhost:3142/debian sid/main mips64el libsasl2-2 mips64el 2.1.28+dfsg1-4+b1 [52.4 kB] Get:102 http://localhost:3142/debian sid/main mips64el libldap-2.5-0 mips64el 2.5.13+dfsg-5+b3 [158 kB] Get:103 http://localhost:3142/debian sid/main mips64el libnghttp2-14 mips64el 1.58.0-1 [68.2 kB] Get:104 http://localhost:3142/debian sid/main mips64el libpsl5 mips64el 0.21.2-1+b1 [58.8 kB] Get:105 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.3.dfsg-3+b1 [79.0 kB] Get:106 http://localhost:3142/debian sid/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b2 [56.0 kB] Get:107 http://localhost:3142/debian sid/main mips64el libssh2-1 mips64el 1.11.0-4 [203 kB] Get:108 http://localhost:3142/debian sid/main mips64el libzstd1 mips64el 1.5.5+dfsg2-2 [286 kB] Get:109 http://localhost:3142/debian sid/main mips64el libcurl3-gnutls mips64el 8.5.0-2 [385 kB] Get:110 http://localhost:3142/debian sid/main mips64el libcurl4-gnutls-dev mips64el 8.5.0-2 [538 kB] Get:111 http://localhost:3142/debian sid/main mips64el libdeflate0 mips64el 1.18-1 [36.1 kB] Get:112 http://localhost:3142/debian sid/main mips64el libdeflate-dev mips64el 1.18-1 [44.8 kB] Get:113 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 13.2.0-10 [113 kB] Get:114 http://localhost:3142/debian sid/main mips64el libgcc-11-dev mips64el 11.4.0-7 [281 kB] Get:115 http://localhost:3142/debian sid/main mips64el libhtscodecs2 mips64el 1.6.0-1 [69.4 kB] Get:116 http://localhost:3142/debian sid/main mips64el libhtscodecs-dev mips64el 1.6.0-1 [2976 kB] Get:117 http://localhost:3142/debian sid/main mips64el liblzma5 mips64el 5.4.5-0.3 [234 kB] Get:118 http://localhost:3142/debian sid/main mips64el liblzma-dev mips64el 5.4.5-0.3 [294 kB] Get:119 http://localhost:3142/debian sid/main mips64el libssl-dev mips64el 3.1.4-2 [2310 kB] Get:120 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 13.2.0-10 [615 kB] Get:121 http://localhost:3142/debian sid/main mips64el libstdc++-11-dev mips64el 11.4.0-7 [2020 kB] Get:122 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.3.dfsg-3+b1 [912 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.6 MB in 2s (40.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 16259 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.45-2+b1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-2+b1_amd64.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14_amd64.deb ... Unpacking gettext-base (0.21-14) ... 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Selecting previously unselected package zlib1g-dev:mips64el. Preparing to unpack .../120-zlib1g-dev_1%3a1.3.dfsg-3+b1_mips64el.deb ... Unpacking zlib1g-dev:mips64el (1:1.3.dfsg-3+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mips64el. Preparing to unpack .../121-sbuild-build-depends-main-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-1+b2) ... Setting up gcc-11-base:mips64el (11.4.0-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:amd64 (72.1-4) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.10) ... Setting up libmagic1:amd64 (1:5.45-2+b1) ... Setting up gcc-12-cross-base-mipsen (12.3.0-6cross3) ... Setting up libc6-mips64el-cross (2.37-13cross1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.41.90.20240115-1cross5) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:mips64el (13.2.0-10) ... Setting up gcc-13-cross-base-mipsen (13.2.0-10cross1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up linux-libc-dev-mips64el-cross (6.6.11-1cross1) ... Setting up gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.3.0-6cross3) ... Setting up cpp-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libgomp1-mips64el-cross (13.2.0-10cross1) ... Setting up libgcc-s1-mips64el-cross (13.2.0-10cross1) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libatomic1-mips64el-cross (13.2.0-10cross1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libc6-dev-mips64el-cross (2.37-13cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-mips64el-cross (13.2.0-10cross1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libgcc-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libstdc++-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up debhelper (13.11.10) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (13.2.0-10) ... Setting up libc6:mips64el (2.37-13) ... Setting up libffi8:mips64el (3.4.4-2) ... Setting up libtasn1-6:mips64el (4.19.0-3+b2) ... Setting up libbz2-1.0:mips64el (1.0.8-5+b2) ... Setting up libdb5.3:mips64el (5.3.28+dfsg2-4+b1) ... Setting up libstdc++6:mips64el (13.2.0-10) ... Setting up libhtscodecs2:mips64el (1.6.0-1) ... Setting up libzstd1:mips64el (1.5.5+dfsg2-2) ... Setting up libkeyutils1:mips64el (1.6.3-2+b2) ... Setting up liblzma5:mips64el (5.4.5-0.3) ... Setting up libbrotli1:mips64el (1.1.0-2+b3) ... Setting up libssl3:mips64el (3.1.4-2) ... Setting up libnghttp2-14:mips64el (1.58.0-1) ... Setting up libdeflate0:mips64el (1.18-1) ... Setting up zlib1g:mips64el (1:1.3.dfsg-3+b1) ... Setting up libcrypt1:mips64el (1:4.4.36-4) ... Setting up libcom-err2:mips64el (1.47.0-2+b1) ... Setting up libgomp1:mips64el (13.2.0-10) ... Setting up libkrb5support0:mips64el (1.20.1-5) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg1-4+b1) ... Setting up libhtscodecs-dev:mips64el (1.6.0-1) ... Setting up libnettle8:mips64el (3.9.1-2) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-2) ... Setting up libp11-kit0:mips64el (0.25.3-4) ... Setting up libunistring5:mips64el (1.1-2) ... Setting up libssl-dev:mips64el (3.1.4-2) ... Setting up libatomic1:mips64el (13.2.0-10) ... Setting up libk5crypto3:mips64el (1.20.1-5) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg1-4+b1) ... Setting up liblzma-dev:mips64el (5.4.5-0.3) ... Setting up libgcc-11-dev:mips64el (11.4.0-7) ... Setting up libcrypt-dev:mips64el (1:4.4.36-4) ... Setting up libssh2-1:mips64el (1.11.0-4) ... Setting up libkrb5-3:mips64el (1.20.1-5) ... Setting up libdeflate-dev:mips64el (1.18-1) ... Setting up libhogweed6:mips64el (3.9.1-2) ... Setting up libidn2-0:mips64el (2.3.4-1+b2) ... Setting up libgnutls30:mips64el (3.8.3-1) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-5) ... Setting up libtirpc3:mips64el (1.3.4+ds-1) ... Setting up libpsl5:mips64el (0.21.2-1+b1) ... Setting up libldap-2.5-0:mips64el (2.5.13+dfsg-5+b3) ... Setting up libtirpc-dev:mips64el (1.3.4+ds-1) ... Setting up libnsl2:mips64el (1.3.0-3) ... Setting up libcurl3-gnutls:mips64el (8.5.0-2) ... Setting up libcurl4-gnutls-dev:mips64el (8.5.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-3) ... Setting up libc6-dev:mips64el (2.37-13) ... Setting up libbz2-dev:mips64el (1.0.8-5+b2) ... Setting up libstdc++-11-dev:mips64el (11.4.0-7) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg-3+b1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.90.20240122-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-10 gcc-11_11.4.0-7 gcc-13_13.2.0-10 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-10 libstdc++6_13.2.0-10 libstdc++6-mips64el-cross_13.2.0-10cross1 linux-libc-dev_6.6.13-1 Package versions: adduser_3.137 apt_2.7.10 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41.90.20240122-1 binutils-common_2.41.90.20240122-1 binutils-mips64el-linux-gnuabi64_2.41.90.20240115-1cross5 binutils-x86-64-linux-gnu_2.41.90.20240122-1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3 cpp-13_13.2.0-10 cpp-mips64el-linux-gnuabi64_4:12.2.0-4 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.10 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.33-1 file_1:5.45-2+b1 findutils_4.9.0-5 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-12-mips64el-linux-gnuabi64_12.3.0-6cross3 g++-13_13.2.0-10 g++-mips64el-linux-gnuabi64_4:12.2.0-4 gcc_4:13.2.0-2 gcc-11_11.4.0-7 gcc-11-base_11.4.0-7 gcc-12-base_12.3.0-14 gcc-12-cross-base-mipsen_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3 gcc-13_13.2.0-10 gcc-13-base_13.2.0-10 gcc-13-cross-base-mipsen_13.2.0-10cross1 gcc-9-base_9.5.0-4 gcc-mips64el-linux-gnuabi64_4:12.2.0-4 gettext_0.21-14 gettext-base_0.21-14 gpgv_2.2.40-1.1+b1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-6 libapt-pkg6.0_2.7.10 libarchive-zip-perl_1.68-1 libasan6_11.4.0-7 libasan8_13.2.0-10 libatomic1_13.2.0-10 libatomic1-mips64el-cross_13.2.0-10cross1 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.90.20240122-1 libblkid1_2.39.3-6 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-13 libc-dev-bin_2.37-13 libc6_2.37-13 libc6-dev_2.37-13 libc6-dev-mips64el-cross_2.37-13cross1 libc6-mips64el-cross_2.37-13cross1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4+b2 libcc1-0_13.2.0-10 libcom-err2_1.47.0-2+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41.90.20240122-1 libctf0_2.41.90.20240122-1 libcurl3-gnutls_8.5.0-2 libcurl4-gnutls-dev_8.5.0-2 libdb5.3_5.3.28+dfsg2-4+b1 libdebconfclient0_0.271 libdebhelper-perl_13.11.10 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdpkg-perl_1.22.2 libelf1_0.190-1+b1 libext2fs2_1.47.0-2+b1 libfakeroot_1.33-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-7 libgcc-12-dev-mips64el-cross_12.3.0-6cross3 libgcc-13-dev_13.2.0-10 libgcc-s1_13.2.0-10 libgcc-s1-mips64el-cross_13.2.0-10cross1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_13.2.0-10 libgomp1-mips64el-cross_13.2.0-10cross1 libgpg-error0_1.47-3 libgprofng0_2.41.90.20240122-1 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhtscodecs-dev_1.6.0-1 libhtscodecs2_1.6.0-1 libhwasan0_13.2.0-10 libicu72_72.1-4 libidn2-0_2.3.4-1+b2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_13.2.0-10 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2+b2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libldap-2.5-0_2.5.13+dfsg-5+b3 liblocale-gettext-perl_1.07-6+b1 liblsan0_13.2.0-10 liblz4-1_1.9.4-1+b2 liblzma-dev_5.4.5-0.3 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2+b1 libmagic1_1:5.45-2+b1 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.2-9.1+b1 libpam-modules-bin_1.5.2-9.1+b1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1+b1 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1+b2 libpsl5_0.21.2-1+b1 libquadmath0_13.2.0-10 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4+b1 libsasl2-modules-db_2.1.28+dfsg1-4+b1 libseccomp2_2.5.5-1 libselinux1_3.5-1+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b2 libsepol2_3.5-2 libsframe1_2.41.90.20240122-1 libsmartcols1_2.39.3-6 libss2_1.47.0-2+b1 libssh2-1_1.11.0-4 libssl-dev_3.1.4-2 libssl3_3.1.4-2 libstdc++-11-dev_11.4.0-7 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-10 libstdc++6_13.2.0-10 libstdc++6-mips64el-cross_13.2.0-10cross1 libsub-override-perl_0.10-1 libsystemd0_255.2-4 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-7 libtsan2_13.2.0-10 libubsan1_13.2.0-10 libuchardet0_0.0.8-1 libudev1_255.2-4 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b2 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.13-1 linux-libc-dev-mips64el-cross_6.6.11-1cross1 login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-3 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_39 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3+b1 zlib1g-dev_1:1.3.dfsg-3+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.18+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 48c071f82871471b8b206a1d2879a7732832c0e0 1469485 htslib_1.18+ds.orig.tar.bz2 06ef58c96bffd288e743c7a84ef61d2db3540c66 20136 htslib_1.18+ds-1.debian.tar.xz Checksums-Sha256: 3d2536366b273a7add9cd98041e26b32a58466613a7017c0e2ee95e871dd7ee3 1469485 htslib_1.18+ds.orig.tar.bz2 a00dc3fe4177b10919835976c3635ee42b02c89382b28503fda77fb1978f4043 20136 htslib_1.18+ds-1.debian.tar.xz Files: 177115da7d2acc4cc41a4e7abd0a3da0 1469485 htslib_1.18+ds.orig.tar.bz2 568c9ee6a51e718899ffde8b57cd56e6 20136 htslib_1.18+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVKn40UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqa1w//QZwAzVcaUtG1DLYZJKL8Ge/mLpu3 g8GAlwqtJMPHsOZeTdpN/f2fxkYljEPxkGehPOcEjlift3m5BCjDtvY5Sta2z4pt SPt7di9qW8fVIKk2JQeAjarwMF2RIO32Xq+BtKSUJnA73xWBEtFjcV11IgLSvp/5 nf5pnGzZlyb09R7pFqLSov2Z3VvaZKKb5A/v9VBRcg68QqzZtyTRz0qO0rl6q/ds gedz4V77aL0pzhq+FLe1sF1UdjzPymcFcqlG9s5ymZ3eTQ4RjeTlRBUUgRMbIS/e j/tLsBJ6SGfAU0goHp9u5l/k7S1pWvIt0eha68VjIPrMQXYAlkTyDAiqSqTsINjT bD+f+FJYOUc7C/TV+kJgc5zopQr7/+fxi7wm7JhSWdycQccrziXDYpfG8oEHcsir Ux9K8nHW/1K8cT50kUqaZ4p00fC8nXZxcxiLZtVUBC7wfDIzR6hXwrdNtWfyJ9Yo uaCj4v/BikxtbHk79PSGcmSZoeCkTgkElyDahDZoodfNQukjbJUo9P3e+ADZ/imI b9z5rxEUyxE1BYUukpixHUrwhxg+KjJ9UUoKOmTzreDvv27y4ORM6lASsJjfKyt+ 0pyxKQO+E/dbKPQkj8CHiDiB+N0LxA94YbIYmTiJYjaF0TxDEsghVbEqaTGTg7DN 9HNzEI9561cDkPw= =m4et -----END PGP SIGNATURE----- gpgv: Signature made Tue Nov 7 20:35:25 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htslib_1.18+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.18+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.18+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying fix_sequence_of_linked_libs.patch dpkg-source: info: applying trim-file-prefix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.OGUWA3Dx9G/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-085ceb46-d835-4e77-81d8-83380b7ff7b9 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.18+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from htslib-1.18+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_faidx test/test_kfunc test/test_kstring test/test_mod test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes \ && autoconf \ && dh_auto_configure -- \ --enable-libcurl \ --enable-gcs \ --enable-s3 \ --enable-plugins \ --with-plugin-dir='/usr/lib/mips64el-linux-gnuabi64/htslib' \ --with-external-htscodecs \ --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib' ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/usr/lib/mips64el-linux-gnuabi64/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for mips64el-linux-gnuabi64-gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for ssse3... none checking C compiler flags needed for popcnt... none checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for mips64el-linux-gnuabi64-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for mips64el-linux-gnuabi64... plain .so checking whether the linker supports versioned symbols... yes checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.18" \ libdir=/usr/lib/mips64el-linux-gnuabi64 make -j1 "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.18 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.18"' > version.h printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 'mips64el-linux-gnuabi64-gcc' \ '-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2' \ '-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects' \ '-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic' \ '-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm ' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ > config_vars.h mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_mods.o sam_mods.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o mips64el-linux-gnuabi64-ranlib libhts.a mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam_mods.pico sam_mods.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib\" -fPIC -c -o plugin.pico plugin.c mips64el-linux-gnuabi64-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup_mod.o test/pileup_mod.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_faidx.o test/test_faidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3/ debian/libhts3/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.18" \ libdir=/usr/lib/mips64el-linux-gnuabi64 install -m0755 -d /<>/htslib-1.18\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.18\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.18 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig if test -n "/usr/lib/mips64el-linux-gnuabi64/htslib"; then mkdir -p -m 755 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 ln -sf libhts.so.1.18 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -sf libhts.so.1.18 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/mips64el-linux-gnuabi64#g;s#@-PACKAGE_VERSION@#1.18#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -m0755 -d debian/libhts3/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 debian/libhts3/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts3/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man5/ install -m0755 -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig/ install -m0755 -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -m0755 -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/copyright debian/libhts3/usr/share/doc/libhts3/copyright install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -m0755 -d debian/libhts3/usr/share/doc/libhts3 install -p -m0644 debian/.debhelper/generated/libhts3/dh_installchangelogs.dch.trimmed debian/libhts3/usr/share/doc/libhts3/changelog.Debian install -p -m0644 NEWS debian/libhts3/usr/share/doc/libhts3/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -m0755 -d debian/libhts3/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3/usr/share/man/man5/faidx.5.dh-new debian/libhts3/usr/share/man/man5/faidx.5 mv debian/libhts3/usr/share/man/man5/sam.5.dh-new debian/libhts3/usr/share/man/man5/sam.5 mv debian/libhts3/usr/share/man/man5/vcf.5.dh-new debian/libhts3/usr/share/man/man5/vcf.5 mv debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3/usr/share/man/man5/faidx.5 debian/libhts3/usr/share/man/man5/sam.5 debian/libhts3/usr/share/man/man5/vcf.5 debian/libhts3/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_perl -a dh_link -a rm -f debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 ln -s libhts.so.1.18 debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 rm -f debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -s libhts.so.1.18 debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so install -m0755 -d debian/tabix/usr/share/man/man1 rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3 chmod a-x usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3/changelog usr/share/doc/libhts3/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -m0755 -d debian/libhts3/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/libhts3/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3.debug -- debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 dwz: debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18: DWARF compression not beneficial - old size 920885 new size 940013 mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/libhts3/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3.debug chmod 0644 -- debian/libhts3/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3.debug install -m0755 -d debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug chmod 0644 -- debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e7 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e7/b4dc84dcecb325dd668b4d0870c6d5dceedca5.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e7/b4dc84dcecb325dd668b4d0870c6d5dceedca5.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e7/b4dc84dcecb325dd668b4d0870c6d5dceedca5.debug debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/a5acb416040a1c40eec10a5b007bfbcd5c56cc.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/a5acb416040a1c40eec10a5b007bfbcd5c56cc.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/a4/a5acb416040a1c40eec10a5b007bfbcd5c56cc.debug debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/81 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/81/482cd2be17e41b966532b7985b0cd454d69f42.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/81/482cd2be17e41b966532b7985b0cd454d69f42.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/81/482cd2be17e41b966532b7985b0cd454d69f42.debug debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e2 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e2/a7d82e95463e2038ac320f0e34951c447d62e6.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e2/a7d82e95463e2038ac320f0e34951c447d62e6.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/e2/a7d82e95463e2038ac320f0e34951c447d62e6.debug debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8a mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8a/e43bdfc0ca230705174255af33707244e933df.debug chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8a/e43bdfc0ca230705174255af33707244e933df.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.build-id/8a/e43bdfc0ca230705174255af33707244e933df.debug debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/libhts3/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/usr/share/doc ln -s libhts3 debian/.debhelper/libhts3/dbgsym-root/usr/share/doc/libhts3-dbgsym install -m0755 -d debian/.debhelper/libhts3 install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/29 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/29/d9b9207641b95c8e625930f146474c440e2573.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/29/d9b9207641b95c8e625930f146474c440e2573.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/29/d9b9207641b95c8e625930f146474c440e2573.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/d6f537393128ffd57fd8a211635bbba8c12fe4.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/d6f537393128ffd57fd8a211635bbba8c12fe4.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/d6f537393128ffd57fd8a211635bbba8c12fe4.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/cf30610291fa1bb9c70deca6405dca6443900d.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/cf30610291fa1bb9c70deca6405dca6443900d.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/cf30610291fa1bb9c70deca6405dca6443900d.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym install -m0755 -d debian/.debhelper/tabix make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3/DEBIAN/shlibs install -m0755 -d debian/libhts3/DEBIAN echo "libhts 3 libhts3 (>= 1.18+ds)" >> debian/libhts3/DEBIAN/shlibs chmod 0644 -- debian/libhts3/DEBIAN/shlibs dpkg-gensymbols -plibhts3 -Idebian/libhts3.symbols -Pdebian/libhts3 -edebian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 mv debian/.debhelper/generated/libhts3/triggers.new debian/.debhelper/generated/libhts3/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libhts3/DEBIAN dpkg-shlibdeps -Tdebian/libhts3.substvars debian/libhts3/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so install -m0755 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -m0755 -d debian/libhts3/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3/triggers debian/libhts3/DEBIAN/triggers install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol -a install -m0755 -d debian/libhts3/DEBIAN echo misc:Depends= >> debian/libhts3.substvars echo misc:Pre-Depends= >> debian/libhts3.substvars install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/.debhelper/libhts3/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libhts3-dbgsym "-DDepends=libhts3 (= \${binary:Version})" "-DDescription=debug symbols for libhts3" "-DBuild-Ids=81482cd2be17e41b966532b7985b0cd454d69f42 8ae43bdfc0ca230705174255af33707244e933df a4a5acb416040a1c40eec10a5b007bfbcd5c56cc e2a7d82e95463e2038ac320f0e34951c447d62e6 e7b4dc84dcecb325dd668b4d0870c6d5dceedca5" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3 -ldebian/changelog -Tdebian/libhts3.substvars -Pdebian/libhts3 chmod 0644 -- debian/libhts3/DEBIAN/control install -m0755 -d debian/libhts-dev/DEBIAN echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=29d9b9207641b95c8e625930f146474c440e2573 44cf30610291fa1bb9c70deca6405dca6443900d b5d6f537393128ffd57fd8a211635bbba8c12fe4" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libhts3/DEBIAN cd debian/libhts3 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3/dbgsym-root/DEBIAN cd debian/.debhelper/libhts3/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3/dbgsym-root/DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3 .. dpkg-deb: building package 'libhts3' in '../libhts3_1.18+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3/dbgsym-root .. dpkg-deb: building package 'libhts3-dbgsym' in '../libhts3-dbgsym_1.18+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.18+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.18+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.18+ds-1_mips64el.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.18+ds-1_mips64el.buildinfo dpkg-genchanges --build=any -O../htslib_1.18+ds-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.18+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-23T02:21:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.18+ds-1_mips64el.changes: ---------------------------------- Format: 1.8 Date: Tue, 07 Nov 2023 19:46:30 +0100 Source: htslib Binary: libhts-dev libhts3 libhts3-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.18+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libhts-dev - development files for the HTSlib libhts3 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.18+ds-1) unstable; urgency=medium . * Migrate htslib 1.18 from experimental to unstable. 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libhts-dev_1.18+ds-1_mips64el.deb 2a8429dc3d4e159b2db7e01a01b6e2e3fc1e7b75f74f776e82e43a13618c5d6f 1254112 libhts3-dbgsym_1.18+ds-1_mips64el.deb ca0dba94e3c4840ad9c63bfc055b9e831416c1cfe28c0c1d2f5dfbf5f557647f 396728 libhts3_1.18+ds-1_mips64el.deb f6f9ddb9e39ac4366e0707758633156eeb79c8a9dafd6a0b78538d71fd8cbc0a 2718632 tabix-dbgsym_1.18+ds-1_mips64el.deb 2d31f1bd6244ec933d7d8e2fa13e056aa5578b43dae170b4787d017c465c8c23 429832 tabix_1.18+ds-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 23 Jan 2024 02:21:15 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.41.90.20240122-1), binutils-common (= 2.41.90.20240122-1), binutils-x86-64-linux-gnu (= 2.41.90.20240122-1), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3+b1), cpp (= 4:13.2.0-2), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-10), dash (= 0.5.12-6), debconf (= 1.5.83), debhelper (= 13.11.10), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-10), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-10), gcc-13-base (= 13.2.0-10), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-6), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-10), libatomic1 (= 13.2.0-10), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.90.20240122-1), libblkid1 (= 2.39.3-6), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5+b2), libbz2-dev (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-10), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.90.20240122-1), libctf0 (= 2.41.90.20240122-1), libcurl3-gnutls (= 8.5.0-2), libcurl4-gnutls-dev (= 8.5.0-2), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.10), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libffi8 (= 3.4.4-2), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-7), libgcc-13-dev (= 13.2.0-10), libgcc-s1 (= 13.2.0-10), libgcrypt20 (= 1.10.3-2), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2), libgnutls30 (= 3.8.3-1), libgomp1 (= 13.2.0-10), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41.90.20240122-1), libgssapi-krb5-2 (= 1.20.1-5), libhogweed6 (= 3.9.1-2), libhtscodecs-dev (= 1.6.0-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 13.2.0-10), libicu72 (= 72.1-4), libidn2-0 (= 2.3.4-1+b2), libisl23 (= 0.26-3+b2), libitm1 (= 13.2.0-10), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-5), libkeyutils1 (= 1.6.3-2+b2), libkrb5-3 (= 1.20.1-5), libkrb5support0 (= 1.20.1-5), libldap-2.5-0 (= 2.5.13+dfsg-5+b3), liblsan0 (= 13.2.0-10), liblz4-1 (= 1.9.4-1+b2), liblzma-dev (= 5.4.5-0.3), liblzma5 (= 5.4.5-0.3), libmagic-mgc (= 1:5.45-2+b1), libmagic1 (= 1:5.45-2+b1), libmd0 (= 1.1.0-2), libmount1 (= 2.39.3-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.2-9.1+b1), libpam-modules-bin (= 1.5.2-9.1+b1), libpam-runtime (= 1.5.2-9.1), libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-3), libpipeline1 (= 1.5.7-1+b2), libpsl5 (= 0.21.2-1+b1), libquadmath0 (= 13.2.0-10), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-4+b1), libsasl2-modules-db (= 2.1.28+dfsg1-4+b1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.90.20240122-1), libsmartcols1 (= 2.39.3-6), libssh2-1 (= 1.11.0-4), libssl-dev (= 3.1.4-2), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-10), libstdc++6 (= 13.2.0-10), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-10), libubsan1 (= 13.2.0-10), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.13-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3), perl-base (= 5.38.2-3), perl-modules-5.38 (= 5.38.2-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3+b1), zlib1g-dev (= 1:1.3.dfsg-3+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1699382790" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.18+ds-1_mips64el.deb --------------------------------- new Debian package, version 2.0. size 1660152 bytes: control archive=1980 bytes. 1216 bytes, 27 lines control 2361 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.18+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 7089 Depends: libhts3 (= 1.18+ds-1), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2023-11-07 18:46 ./ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/include/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/include/htslib/ -rw-r--r-- root/root 16469 2023-07-20 15:01 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 22175 2023-01-20 10:05 ./usr/include/htslib/cram.h -rw-r--r-- root/root 15122 2023-07-20 15:01 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 13351 2022-07-27 10:31 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 57362 2023-07-25 08:16 ./usr/include/htslib/hts.h -rw-r--r-- root/root 4010 2021-10-15 15:03 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11708 2022-08-12 11:26 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2022-07-14 09:33 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2022-05-13 15:25 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2022-01-11 12:11 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22903 2023-04-06 07:36 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5135 2019-11-19 11:20 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2022-07-27 10:31 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 9224 2023-07-20 15:01 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11507 2022-08-16 10:42 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11462 2022-07-27 10:31 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 91648 2023-06-30 14:25 ./usr/include/htslib/sam.h -rw-r--r-- root/root 16584 2023-06-05 14:19 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4956 2022-05-13 15:25 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 68420 2023-07-20 15:01 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 6737762 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/libhts.a lrwxrwxrwx root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/libhts.so -> libhts.so.1.18 drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/ -rw-r--r-- root/root 682 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 09:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2022-07-03 07:14 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 3127 2023-11-07 18:46 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 33517 2023-07-25 08:16 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2023-08-23 16:41 ./usr/share/doc/libhts-dev/copyright libhts3-dbgsym_1.18+ds-1_mips64el.deb ------------------------------------- new Debian package, version 2.0. size 1254112 bytes: control archive=816 bytes. 558 bytes, 13 lines control 621 bytes, 6 lines md5sums Package: libhts3-dbgsym Source: htslib Version: 1.18+ds-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1362 Depends: libhts3 (= 1.18+ds-1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3 Build-Ids: 81482cd2be17e41b966532b7985b0cd454d69f42 8ae43bdfc0ca230705174255af33707244e933df a4a5acb416040a1c40eec10a5b007bfbcd5c56cc e2a7d82e95463e2038ac320f0e34951c447d62e6 e7b4dc84dcecb325dd668b4d0870c6d5dceedca5 drwxr-xr-x root/root 0 2023-11-07 18:46 ./ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 39904 2023-11-07 18:46 ./usr/lib/debug/.build-id/81/482cd2be17e41b966532b7985b0cd454d69f42.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 14952 2023-11-07 18:46 ./usr/lib/debug/.build-id/8a/e43bdfc0ca230705174255af33707244e933df.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 53976 2023-11-07 18:46 ./usr/lib/debug/.build-id/a4/a5acb416040a1c40eec10a5b007bfbcd5c56cc.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/e2/ -rw-r--r-- root/root 25792 2023-11-07 18:46 ./usr/lib/debug/.build-id/e2/a7d82e95463e2038ac320f0e34951c447d62e6.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/e7/ -rw-r--r-- root/root 1227880 2023-11-07 18:46 ./usr/lib/debug/.build-id/e7/b4dc84dcecb325dd668b4d0870c6d5dceedca5.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 12704 2023-11-07 18:46 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-11-07 18:46 ./usr/share/doc/libhts3-dbgsym -> libhts3 libhts3_1.18+ds-1_mips64el.deb ------------------------------ new Debian package, version 2.0. size 396728 bytes: control archive=6024 bytes. 1225 bytes, 23 lines control 907 bytes, 12 lines md5sums 30 bytes, 1 lines shlibs 30122 bytes, 930 lines symbols 69 bytes, 2 lines triggers Package: libhts3 Source: htslib Version: 1.18+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1312 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libtabixpp (<< 1.0.0-5~), samtools (<< 1.17~) Replaces: libhts-dev (<< 1.13~) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2023-11-07 18:46 ./ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/htslib/ -rw-r--r-- root/root 68128 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so -rw-r--r-- root/root 69192 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so -rw-r--r-- root/root 68968 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so -rw-r--r-- root/root 68752 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so -rw-r--r-- root/root 964184 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.1.18 lrwxrwxrwx root/root 0 2023-11-07 18:46 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.3 -> libhts.so.1.18 drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/libhts3/ -rw-r--r-- root/root 3127 2023-11-07 18:46 ./usr/share/doc/libhts3/changelog.Debian.gz -rw-r--r-- root/root 33517 2023-07-25 08:16 ./usr/share/doc/libhts3/changelog.gz -rw-r--r-- root/root 5897 2023-08-23 16:41 ./usr/share/doc/libhts3/copyright drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/man/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2023-11-07 18:46 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2023-11-07 18:46 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2023-11-07 18:46 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/man/man7/ -rw-r--r-- root/root 3416 2023-11-07 18:46 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.18+ds-1_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 2718632 bytes: control archive=704 bytes. 453 bytes, 12 lines control 407 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.18+ds-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2929 Depends: tabix (= 1.18+ds-1) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 29d9b9207641b95c8e625930f146474c440e2573 44cf30610291fa1bb9c70deca6405dca6443900d b5d6f537393128ffd57fd8a211635bbba8c12fe4 drwxr-xr-x root/root 0 2023-11-07 18:46 ./ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 1048696 2023-11-07 18:46 ./usr/lib/debug/.build-id/29/d9b9207641b95c8e625930f146474c440e2573.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 833704 2023-11-07 18:46 ./usr/lib/debug/.build-id/44/cf30610291fa1bb9c70deca6405dca6443900d.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 1023456 2023-11-07 18:46 ./usr/lib/debug/.build-id/b5/d6f537393128ffd57fd8a211635bbba8c12fe4.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 75928 2023-11-07 18:46 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-11-07 18:46 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.18+ds-1_mips64el.deb ---------------------------- new Debian package, version 2.0. size 429832 bytes: control archive=1132 bytes. 988 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.18+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2548 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2023-11-07 18:46 ./ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/bin/ -rwxr-xr-x root/root 757592 2023-11-07 18:46 ./usr/bin/bgzip -rwxr-xr-x root/root 893832 2023-11-07 18:46 ./usr/bin/htsfile -rwxr-xr-x root/root 894896 2023-11-07 18:46 ./usr/bin/tabix drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/doc/tabix/ -rw-r--r-- root/root 3127 2023-11-07 18:46 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 33517 2023-07-25 08:16 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2023-08-23 16:41 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/man/ drwxr-xr-x root/root 0 2023-11-07 18:46 ./usr/share/man/man1/ -rw-r--r-- root/root 2920 2023-11-07 18:46 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1916 2023-11-07 18:46 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3341 2023-11-07 18:46 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1418 B] Get:5 copy:/<>/apt_archive ./ Packages [1503 B] Fetched 3536 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.8 MB of archives. After this operation, 51.9 MB of additional disk space will be used. 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amd64 libclass-xsaccessor-perl amd64 1.19-4+b2 [36.3 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b2 [24.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b1 [128 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 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http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b2 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b2 [29.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:73 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1 [338 kB] Get:74 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.084-1 [216 kB] Get:75 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.73-1 [182 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b4 [143 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b1 [11.2 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b2 [17.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b1 [42.2 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b1 [99.2 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b1 [57.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1+b1 [27.1 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b2 [24.7 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b2 [8704 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b3 [174 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b2 [72.7 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b1 [20.3 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1+b1 [34.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.8 MB in 0s (102 MB/s) Selecting previously unselected package netbase. 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Setting up liblz1:amd64 (1.13-6) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b2) ... Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b1) ... Setting up libmouse-perl (2.5.10-1+b4) ... Setting up libdata-messagepack-perl (1.02-1+b2) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b1) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b2) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.45.0-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... 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Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b2) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.4-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b2) ... Setting up libperlio-gzip-perl (0.20-1+b2) ... Setting up readline-common (8.2-3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.21-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b2) ... Setting up libnet-ssleay-perl:amd64 (1.94-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1+b1) ... Setting up gpgconf (2.2.40-1.1+b1) ... Setting up libio-socket-ssl-perl (2.084-1) ... Setting up gpg (2.2.40-1.1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up libcgi-pm-perl (4.61-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.73-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... Processing triggers for man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 78272 Build-Time: 101 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 14 Job: htslib_1.18+ds-1 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 126 Source-Version: 1.18+ds-1 Space: 78272 Status: successful Version: 1.18+ds-1 -------------------------------------------------------------------------------- Finished at 2024-01-23T02:21:15Z Build needed 00:02:06, 78272k disk space