sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.19+ds-1.1 (mips64el) Wed, 10 Apr 2024 09:12:06 +0000 | +==============================================================================+ Package: htslib Version: 1.19+ds-1.1 Source Version: 1.19+ds-1.1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-bf7544c2-bd3f-421a-907b-29728185af4b' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-VdTVKN/resolver-EzTpuS' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-10-0804.53-F-2024-04-10-0205.10.pdiff [9900 B] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-10-0804.53-F-2024-04-10-0205.10.pdiff [20.0 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-10-0804.53-F-2024-04-10-0205.10.pdiff [9900 B] Get:6 http://localhost:3142/debian sid/main mips64el Packages [9535 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-10-0804.53-F-2024-04-10-0205.10.pdiff [20.0 kB] Fetched 9891 kB in 3s (3401 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5308 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libc6-dev amd64 2.37-16 [1904 kB] Get:2 http://localhost:3142/debian sid/main amd64 libc-dev-bin amd64 2.37-16 [47.5 kB] Get:3 http://localhost:3142/debian sid/main amd64 libc6 amd64 2.37-16 [2754 kB] Get:4 http://localhost:3142/debian sid/main amd64 libc-bin amd64 2.37-16 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5308 kB in 0s (156 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12865 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.37-16_amd64.deb ... Unpacking libc6-dev:amd64 (2.37-16) over (2.37-15.1) ... Preparing to unpack .../libc-dev-bin_2.37-16_amd64.deb ... Unpacking libc-dev-bin (2.37-16) over (2.37-15.1) ... Preparing to unpack .../libc6_2.37-16_amd64.deb ... Unpacking libc6:amd64 (2.37-16) over (2.37-15.1) ... Setting up libc6:amd64 (2.37-16) ... (Reading database ... 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Setting up libc6-dev:amd64 (2.37-16) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1546 kB of source archives. Get:1 http://localhost:3142/debian sid/main htslib 1.19+ds-1.1 (dsc) [2469 B] Get:2 http://localhost:3142/debian sid/main htslib 1.19+ds-1.1 (tar) [1522 kB] Get:3 http://localhost:3142/debian sid/main htslib 1.19+ds-1.1 (diff) [21.2 kB] Fetched 1546 kB in 1s (2098 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-VdTVKN/htslib-1.19+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-VdTVKN' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [858 B] Get:5 copy:/<>/apt_archive ./ Packages [904 B] Fetched 2371 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1t64 libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev-mips64el-cross libgcc-13-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1t64 libnettle8t64:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5t64:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1t64:mips64el libssl-dev:mips64el libssl3t64:mips64el libstdc++-12-dev-mips64el-cross libstdc++-13-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el m4 man-db po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el libssh2-1-dev:mips64el pkgconf:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libssl-doc:mips64el libstdc++-13-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl krb5-locales:mips64el libldap-common:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-13-base:mips64el gcc-13-cross-base-mipsen gcc-14-base:mips64el gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1t64 libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev-mips64el-cross libgcc-13-dev:mips64el libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1t64 libnettle8t64:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5t64:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1t64:mips64el libssl-dev:mips64el libssl3t64:mips64el libstdc++-12-dev-mips64el-cross libstdc++-13-dev:mips64el libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtasn1-6:mips64el libtool libuchardet0 libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el m4 man-db po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 85.1 MB of archives. After this operation, 347 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40-5 [92.1 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.41.90.20240115-1cross5 [2777 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.3.0-6cross3 [40.1 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [8107 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.3.0-6cross3 [35.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-mipsen all 13.2.0-10cross1 [37.8 kB] Get:26 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.37-13cross1 [1055 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 13.2.0-10cross1 [75.4 kB] Get:28 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 13.2.0-10cross1 [111 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 13.2.0-10cross1 [7120 B] Get:30 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.3.0-6cross3 [294 kB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [16.0 MB] Get:32 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:33 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 13.2.0-10cross1 [568 kB] Get:34 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.37-13cross1 [1574 kB] Get:35 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.3.0-6cross3 [2082 kB] Get:36 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.3.0-6cross3 [9041 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:38 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:39 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:40 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:41 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:48 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:52 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:54 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:56 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:57 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:58 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:61 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:62 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:63 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:64 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:65 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:66 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:67 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:68 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:69 http://localhost:3142/debian sid/main mips64el gcc-13-base mips64el 13.2.0-23 [44.6 kB] Get:70 http://localhost:3142/debian sid/main mips64el gcc-14-base mips64el 14-20240330-1 [43.2 kB] Get:71 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 14-20240330-1 [78.2 kB] Get:72 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.37-16 [2367 kB] Get:73 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 14-20240330-1 [7300 B] Get:74 http://localhost:3142/debian sid/main mips64el libbrotli1 mips64el 1.1.0-2+b3 [325 kB] Get:75 http://localhost:3142/debian sid/main mips64el libbz2-1.0 mips64el 1.0.8-5.1 [39.2 kB] Get:76 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.36-4 [94.1 kB] Get:77 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.36-4 [127 kB] Get:78 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.37-16 [1581 kB] Get:79 http://localhost:3142/debian sid/main mips64el libbz2-dev mips64el 1.0.8-5.1 [34.1 kB] Get:80 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.47.0-2.4 [20.1 kB] Get:81 http://localhost:3142/debian sid/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-2+b1 [546 kB] Get:82 http://localhost:3142/debian sid/main mips64el libnettle8t64 mips64el 3.9.1-2.2 [301 kB] Get:83 http://localhost:3142/debian sid/main mips64el libhogweed6t64 mips64el 3.9.1-2.2 [318 kB] Get:84 http://localhost:3142/debian sid/main mips64el libunistring5 mips64el 1.2-1 [398 kB] Get:85 http://localhost:3142/debian sid/main mips64el libidn2-0 mips64el 2.3.7-2 [126 kB] Get:86 http://localhost:3142/debian sid/main mips64el libffi8 mips64el 3.4.6-1 [23.5 kB] Get:87 http://localhost:3142/debian sid/main mips64el libp11-kit0 mips64el 0.25.3-4 [338 kB] Get:88 http://localhost:3142/debian sid/main mips64el libtasn1-6 mips64el 4.19.0-3+b2 [46.0 kB] Get:89 http://localhost:3142/debian sid/main mips64el libgnutls30t64 mips64el 3.8.5-2 [1258 kB] Get:90 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-6+b1 [31.2 kB] Get:91 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-6+b1 [86.0 kB] Get:92 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-3 [8500 B] Get:93 http://localhost:3142/debian sid/main mips64el libzstd1 mips64el 1.5.5+dfsg2-2 [286 kB] Get:94 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.3.dfsg-3.1 [78.8 kB] Get:95 http://localhost:3142/debian sid/main mips64el libssl3t64 mips64el 3.2.1-3 [1647 kB] Get:96 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-6+b1 [297 kB] Get:97 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-6+b1 [118 kB] Get:98 http://localhost:3142/debian sid/main mips64el libdb5.3t64 mips64el 5.3.28+dfsg2-6 [601 kB] Get:99 http://localhost:3142/debian sid/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg1-6 [18.8 kB] Get:100 http://localhost:3142/debian sid/main mips64el libsasl2-2 mips64el 2.1.28+dfsg1-6 [52.2 kB] Get:101 http://localhost:3142/debian sid/main mips64el libldap-2.5-0 mips64el 2.5.16+dfsg-2 [160 kB] Get:102 http://localhost:3142/debian sid/main mips64el libnghttp2-14 mips64el 1.61.0-1 [69.3 kB] Get:103 http://localhost:3142/debian sid/main mips64el libpsl5t64 mips64el 0.21.2-1.1 [56.6 kB] Get:104 http://localhost:3142/debian sid/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b4 [53.5 kB] Get:105 http://localhost:3142/debian sid/main mips64el libssh2-1t64 mips64el 1.11.0-4.1+b2 [204 kB] Get:106 http://localhost:3142/debian sid/main mips64el libcurl3t64-gnutls mips64el 8.7.1-2 [395 kB] Get:107 http://localhost:3142/debian sid/main mips64el libcurl4-gnutls-dev mips64el 8.7.1-2 [552 kB] Get:108 http://localhost:3142/debian sid/main mips64el libdeflate0 mips64el 1.20-1 [37.0 kB] Get:109 http://localhost:3142/debian sid/main mips64el libdeflate-dev mips64el 1.20-1 [46.1 kB] Get:110 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 14-20240330-1 [113 kB] Get:111 http://localhost:3142/debian sid/main mips64el libgcc-13-dev mips64el 13.2.0-23 [319 kB] Get:112 http://localhost:3142/debian sid/main mips64el libhtscodecs2 mips64el 1.6.0-1+b1 [69.7 kB] Get:113 http://localhost:3142/debian sid/main mips64el libhtscodecs-dev mips64el 1.6.0-1+b1 [2977 kB] Get:114 http://localhost:3142/debian sid/main mips64el liblzma5 mips64el 5.6.1+really5.4.5-1 [234 kB] Get:115 http://localhost:3142/debian sid/main mips64el liblzma-dev mips64el 5.6.1+really5.4.5-1 [295 kB] Get:116 http://localhost:3142/debian sid/main mips64el libssl-dev mips64el 3.2.1-3 [2540 kB] Get:117 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 14-20240330-1 [629 kB] Get:118 http://localhost:3142/debian sid/main mips64el libstdc++-13-dev mips64el 13.2.0-23 [2311 kB] Get:119 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.3.dfsg-3.1 [912 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.1 MB in 0s (180 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12865 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40-5_amd64.deb ... Unpacking bsdextrautils (2.40-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. 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Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../018-gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3_amd64.deb ... Unpacking gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.3.0-6cross3) ... Selecting previously unselected package cpp-12-mips64el-linux-gnuabi64. Preparing to unpack .../019-cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3_amd64.deb ... Unpacking cpp-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../020-cpp-mips64el-linux-gnuabi64_4%3a12.2.0-4_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Selecting previously unselected package cross-config. Preparing to unpack .../021-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package gcc-12-cross-base-mipsen. Preparing to unpack .../022-gcc-12-cross-base-mipsen_12.3.0-6cross3_all.deb ... Unpacking gcc-12-cross-base-mipsen (12.3.0-6cross3) ... Selecting previously unselected package gcc-13-cross-base-mipsen. Preparing to unpack .../023-gcc-13-cross-base-mipsen_13.2.0-10cross1_all.deb ... Unpacking gcc-13-cross-base-mipsen (13.2.0-10cross1) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../024-libc6-mips64el-cross_2.37-13cross1_all.deb ... Unpacking libc6-mips64el-cross (2.37-13cross1) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../025-libgcc-s1-mips64el-cross_13.2.0-10cross1_all.deb ... Unpacking libgcc-s1-mips64el-cross (13.2.0-10cross1) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../026-libgomp1-mips64el-cross_13.2.0-10cross1_all.deb ... Unpacking libgomp1-mips64el-cross (13.2.0-10cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. 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Unpacking libconfig-inifiles-perl (3.000003-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../037-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../038-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../039-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../040-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../041-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. 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Selecting previously unselected package libkrb5support0:mips64el. Preparing to unpack .../088-libkrb5support0_1.20.1-6+b1_mips64el.deb ... Unpacking libkrb5support0:mips64el (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:mips64el. Preparing to unpack .../089-libk5crypto3_1.20.1-6+b1_mips64el.deb ... Unpacking libk5crypto3:mips64el (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:mips64el. Preparing to unpack .../090-libkeyutils1_1.6.3-3_mips64el.deb ... Unpacking libkeyutils1:mips64el (1.6.3-3) ... Selecting previously unselected package libzstd1:mips64el. Preparing to unpack .../091-libzstd1_1.5.5+dfsg2-2_mips64el.deb ... Unpacking libzstd1:mips64el (1.5.5+dfsg2-2) ... Selecting previously unselected package zlib1g:mips64el. Preparing to unpack .../092-zlib1g_1%3a1.3.dfsg-3.1_mips64el.deb ... Unpacking zlib1g:mips64el (1:1.3.dfsg-3.1) ... Selecting previously unselected package libssl3t64:mips64el. 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Unpacking libgomp1:mips64el (14-20240330-1) ... Selecting previously unselected package libgcc-13-dev:mips64el. Preparing to unpack .../109-libgcc-13-dev_13.2.0-23_mips64el.deb ... Unpacking libgcc-13-dev:mips64el (13.2.0-23) ... Selecting previously unselected package libhtscodecs2:mips64el. Preparing to unpack .../110-libhtscodecs2_1.6.0-1+b1_mips64el.deb ... Unpacking libhtscodecs2:mips64el (1.6.0-1+b1) ... Selecting previously unselected package libhtscodecs-dev:mips64el. Preparing to unpack .../111-libhtscodecs-dev_1.6.0-1+b1_mips64el.deb ... Unpacking libhtscodecs-dev:mips64el (1.6.0-1+b1) ... Selecting previously unselected package liblzma5:mips64el. Preparing to unpack .../112-liblzma5_5.6.1+really5.4.5-1_mips64el.deb ... Unpacking liblzma5:mips64el (5.6.1+really5.4.5-1) ... Selecting previously unselected package liblzma-dev:mips64el. Preparing to unpack .../113-liblzma-dev_5.6.1+really5.4.5-1_mips64el.deb ... Unpacking liblzma-dev:mips64el (5.6.1+really5.4.5-1) ... 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Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-5) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up gcc-14-base:mips64el (14-20240330-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gcc-12-cross-base-mipsen (12.3.0-6cross3) ... Setting up libc6-mips64el-cross (2.37-13cross1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libyaml-perl (1.31-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.41.90.20240115-1cross5) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:mips64el (13.2.0-23) ... Setting up gcc-13-cross-base-mipsen (13.2.0-10cross1) ... Setting up libc6-dev-mips64el-cross (2.37-13cross1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.3.0-6cross3) ... Setting up cpp-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libgomp1-mips64el-cross (13.2.0-10cross1) ... Setting up libgcc-s1-mips64el-cross (13.2.0-10cross1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libatomic1-mips64el-cross (13.2.0-10cross1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-mips64el-cross (13.2.0-10cross1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libgcc-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up libstdc++-12-dev-mips64el-cross (12.3.0-6cross3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.3.0-6cross3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up debhelper (13.15.3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14-20240330-1) ... Setting up libc6:mips64el (2.37-16) ... Setting up libdb5.3t64:mips64el (5.3.28+dfsg2-6) ... Setting up libffi8:mips64el (3.4.6-1) ... Setting up libtasn1-6:mips64el (4.19.0-3+b2) ... Setting up libbz2-1.0:mips64el (1.0.8-5.1) ... Setting up libstdc++6:mips64el (14-20240330-1) ... Setting up libhtscodecs2:mips64el (1.6.0-1+b1) ... Setting up libzstd1:mips64el (1.5.5+dfsg2-2) ... Setting up libkeyutils1:mips64el (1.6.3-3) ... Setting up liblzma5:mips64el (5.6.1+really5.4.5-1) ... Setting up libbrotli1:mips64el (1.1.0-2+b3) ... Setting up libnghttp2-14:mips64el (1.61.0-1) ... Setting up libdeflate0:mips64el (1.20-1) ... Setting up zlib1g:mips64el (1:1.3.dfsg-3.1) ... Setting up libcrypt1:mips64el (1:4.4.36-4) ... Setting up libcom-err2:mips64el (1.47.0-2.4) ... Setting up libgomp1:mips64el (14-20240330-1) ... Setting up libkrb5support0:mips64el (1.20.1-6+b1) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg1-6) ... Setting up libhtscodecs-dev:mips64el (1.6.0-1+b1) ... Setting up libnettle8t64:mips64el (3.9.1-2.2) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-2+b1) ... Setting up libp11-kit0:mips64el (0.25.3-4) ... Setting up libunistring5:mips64el (1.2-1) ... Setting up libatomic1:mips64el (14-20240330-1) ... Setting up libk5crypto3:mips64el (1.20.1-6+b1) ... Setting up liblzma-dev:mips64el (5.6.1+really5.4.5-1) ... Setting up libhogweed6t64:mips64el (3.9.1-2.2) ... Setting up libgcc-13-dev:mips64el (13.2.0-23) ... Setting up libcrypt-dev:mips64el (1:4.4.36-4) ... Setting up libc6-dev:mips64el (2.37-16) ... Setting up libdeflate-dev:mips64el (1.20-1) ... Setting up libstdc++-13-dev:mips64el (13.2.0-23) ... Setting up libbz2-dev:mips64el (1.0.8-5.1) ... Setting up libssl3t64:mips64el (3.2.1-3) ... Setting up libidn2-0:mips64el (2.3.7-2) ... Setting up libssl-dev:mips64el (3.2.1-3) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg1-6) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg-3.1) ... Setting up libkrb5-3:mips64el (1.20.1-6+b1) ... Setting up libssh2-1t64:mips64el (1.11.0-4.1+b2) ... Setting up libgnutls30t64:mips64el (3.8.5-2) ... Setting up libpsl5t64:mips64el (0.21.2-1.1) ... Setting up libldap-2.5-0:mips64el (2.5.16+dfsg-2) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-6+b1) ... Setting up libcurl3t64-gnutls:mips64el (8.7.1-2) ... Setting up libcurl4-gnutls-dev:mips64el (8.7.1-2) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-16) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-16 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-23 libstdc++6_14-20240330-1 libstdc++6-mips64el-cross_13.2.0-10cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-common_2.42-4 binutils-mips64el-linux-gnuabi64_2.41.90.20240115-1cross5 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40-5 bsdutils_1:2.40-5 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-12-mips64el-linux-gnuabi64_12.3.0-6cross3 cpp-13_13.2.0-23 cpp-13-x86-64-linux-gnu_13.2.0-23 cpp-mips64el-linux-gnuabi64_4:12.2.0-4 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-12-mips64el-linux-gnuabi64_12.3.0-6cross3 g++-13_13.2.0-23 g++-13-x86-64-linux-gnu_13.2.0-23 g++-mips64el-linux-gnuabi64_4:12.2.0-4 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-12-cross-base-mipsen_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64_12.3.0-6cross3 gcc-12-mips64el-linux-gnuabi64-base_12.3.0-6cross3 gcc-13_13.2.0-23 gcc-13-base_13.2.0-23 gcc-13-cross-base-mipsen_13.2.0-10cross1 gcc-13-x86-64-linux-gnu_13.2.0-23 gcc-14-base_14-20240330-1 gcc-mips64el-linux-gnuabi64_4:12.2.0-4 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libatomic1_14-20240330-1 libatomic1-mips64el-cross_13.2.0-10cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40-5 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.37-16 libc-dev-bin_2.37-16 libc6_2.37-16 libc6-dev_2.37-16 libc6-dev-mips64el-cross_2.37-13cross1 libc6-mips64el-cross_2.37-13cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240330-1 libcom-err2_1.47.0-2.4 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl3t64-gnutls_8.7.1-2 libcurl4-gnutls-dev_8.7.1-2 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.3 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.20-1 libdeflate0_1.20-1 libdpkg-perl_1.22.6 libelf1t64_0.191-1+b1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-12-dev-mips64el-cross_12.3.0-6cross3 libgcc-13-dev_13.2.0-23 libgcc-s1_14-20240330-1 libgcc-s1-mips64el-cross_13.2.0-10cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-2 libgomp1_14-20240330-1 libgomp1-mips64el-cross_13.2.0-10cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6+b1 libhogweed6t64_3.9.1-2.2 libhtscodecs-dev_1.6.0-1+b1 libhtscodecs2_1.6.0-1+b1 libhwasan0_14-20240330-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240330-1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-6+b1 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6+b1 libkrb5support0_1.20.1-6+b1 libldap-2.5-0_2.5.16+dfsg-2 liblocale-gettext-perl_1.07-7 liblsan0_14-20240330-1 liblz4-1_1.9.4-2 liblzma-dev_5.6.1+really5.4.5-1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40-5 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.61.0-1 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0t64_1.5.3-4 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-3.2+b2 libpipeline1_1.5.7-2 libpsl5t64_0.21.2-1.1 libquadmath0_14-20240330-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2 libsframe1_2.42-4 libsmartcols1_2.40-5 libssh2-1t64_1.11.0-4.1+b2 libssl-dev_3.2.1-3 libssl3t64_3.2.1-3 libstdc++-12-dev-mips64el-cross_12.3.0-6cross3 libstdc++-13-dev_13.2.0-23 libstdc++6_14-20240330-1 libstdc++6-mips64el-cross_13.2.0-10cross1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240330-1 libubsan1_14-20240330-1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.2-1 libuuid1_2.40-5 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.9-2 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 mount_2.40-5 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3.2+b2 perl-base_5.38.2-3.2+b2 perl-modules-5.38_5.38.2-3.2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-7 tar_1.35+dfsg-3 tzdata_2024a-2 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40-5 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3t64, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.19+ds-1.1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3t64 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 33b65ea5de06a41c42cf8ef0d74f7ef7e4739408 1522390 htslib_1.19+ds.orig.tar.bz2 0fee99895d59ccb0e22ec9b789dcc0a53e479211 21248 htslib_1.19+ds-1.1.debian.tar.xz Checksums-Sha256: e740e5a68db806a4c8252009348da5f0cc1bcdd134f702e4e1cce724e855f777 1522390 htslib_1.19+ds.orig.tar.bz2 035330bf60cacd9827c9a06a00d3f75906f21a1b917cc989021a667f0690bb45 21248 htslib_1.19+ds-1.1.debian.tar.xz Files: 79efd7a83fdd5a36a3d8057180681ec0 1522390 htslib_1.19+ds.orig.tar.bz2 9cf0bbc81b5a43077a9a740a869fc199 21248 htslib_1.19+ds-1.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE496GmCL5m2y8NfJ5v322IrMDrIsFAmXfDigRHHNseW9uQGRl Ymlhbi5vcmcACgkQv322IrMDrIuGZxAAtXoC9ncM9Z1RsnTqMUPtU/RBgFKJnoF9 MRyPtvEXZzU98yQS8pY9GqaWCNfPFVfZ977D6sx4+oM82EcETReRgQ04IeQ1lvSj jGPUoyvpcx2iTeNnx0ad+8TNB/OXs4vOjIk7p41tNv60nOhje1A5DhG5dqTkmquN sMFe0lIPvGbqxhjl6g8Kl1cZKHiMEAJJNvaDMfbymuNj1b1QwBoLxs7c3sXmRimX KLyFprzagMMaWoCXmpU1QSK/fyXt4RAMU94NfexYhNx98gQS0KcQ2zyCn6cdp3Is h5XoQL2gj+YyrzNYqPxgSXvFaIjH5sShWv3GWL8jkDyyL0A3Evxi50G1v+JVB+ZR 6YTckZL+gTYmqdz55eO6MPr53Wc95NdUgGVPNpGyrLBMYGBSEXLivLLpPdNHKue8 RlnRGVlego+AbfEIKW9/Bs8qfF7liejXvUeOrunEgrnnOl1USzODVsqDHkp75YZg yGITrBSSiWczn3biPu/UUMOT2SOGDjhvgYHWTjmODBeG6HncuMT4FlRxvs/2BKMa vdfQhnAPfGJ4vpf1db7+t3tewcxn+uKVBTuMtwqYfzf7XQy1I6bei1kX1bWfnZTp /0+g3UqM6v6R5gx4lmh+3Rgjtb0Z455IuaJVuUSdf8iRhfbMTyAw5xS67kXAx6KD wa0rCCjlRmc= =DKqC -----END PGP SIGNATURE----- gpgv: Signature made Wed Feb 28 10:42:48 2024 UTC gpgv: using RSA key E3DE869822F99B6CBC35F279BF7DB622B303AC8B gpgv: issuer "slyon@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htslib_1.19+ds-1.1.dsc: no acceptable signature found dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.19+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.19+ds-1.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying fix_sequence_of_linked_libs.patch dpkg-source: info: applying trim-file-prefix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.WOkq9styzT/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-bf7544c2-bd3f-421a-907b-29728185af4b SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.19+ds-1.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lukas Märdian dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from htslib-1.19+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a annot-tsv bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_faidx test/test_kfunc test/test_kstring test/test_mod test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3t64/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3 cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes \ && autoconf \ && dh_auto_configure -- \ --enable-libcurl \ --enable-gcs \ --enable-s3 \ --enable-plugins \ --with-plugin-dir='/usr/lib/mips64el-linux-gnuabi64/htslib' \ --with-external-htscodecs \ --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib' ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/usr/lib/mips64el-linux-gnuabi64/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for mips64el-linux-gnuabi64-gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for mips64el-linux-gnuabi64-pkg-config... no checking for pkg-config... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for mips64el-linux-gnuabi64... plain .so checking whether the linker supports versioned symbols... yes checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.19" \ libdir=/usr/lib/mips64el-linux-gnuabi64 make -j1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.19 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.19"' > version.h printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 'mips64el-linux-gnuabi64-gcc' \ '-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2' \ '-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects' \ '-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic' \ '-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm ' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ > config_vars.h mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_mods.o sam_mods.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o mips64el-linux-gnuabi64-ranlib libhts.a mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong 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tbx.pico tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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cram/cram_encode.pico cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration 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-ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib\" -fPIC -c -o plugin.pico plugin.c mips64el-linux-gnuabi64-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o annot-tsv.o annot-tsv.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects 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-Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_faidx.o test/test_faidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3t64/ debian/libhts3t64/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.19" \ libdir=/usr/lib/mips64el-linux-gnuabi64 install -m0755 -d /<>/htslib-1.19\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.19\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.19 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig if test -n "/usr/lib/mips64el-linux-gnuabi64/htslib"; then mkdir -p -m 755 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 ln -sf libhts.so.1.19 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -sf libhts.so.1.19 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/mips64el-linux-gnuabi64#g;s#@-PACKAGE_VERSION@#1.19#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc install -p annot-tsv bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a install -p -m 644 annot-tsv.1 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -m0755 -d debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts3t64/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man5/ install -m0755 -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig/ install -m0755 -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/copyright debian/libhts3t64/usr/share/doc/libhts3t64/copyright install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -m0755 -d debian/libhts3t64/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_lintian -a install -m0755 -d debian/libhts3t64/usr/share/lintian/overrides install -p -m0644 debian/libhts3t64.lintian-overrides debian/libhts3t64/usr/share/lintian/overrides/libhts3t64 dh_perl -a dh_link -a rm -f debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 ln -s libhts.so.1.19 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 rm -f debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -s libhts.so.1.19 debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so install -m0755 -d debian/tabix/usr/share/man/man1 rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3t64 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -m0755 -d debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug -- debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 dwz: debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19: DWARF compression not beneficial - old size 934532 new size 954052 mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug chmod 0644 -- debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug install -m0755 -d debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug chmod 0644 -- debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3d mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3d/0f706d3cec270555ab68c3ab5d143ee37e86d3.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3d/0f706d3cec270555ab68c3ab5d143ee37e86d3.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/3d/0f706d3cec270555ab68c3ab5d143ee37e86d3.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9a mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9a/97434543d8effde34192abfab324b2f3a3d227.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9a/97434543d8effde34192abfab324b2f3a3d227.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/9a/97434543d8effde34192abfab324b2f3a3d227.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8c mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8c/ec703739f102f02b407bf5540a84fbf8c2cad6.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8c/ec703739f102f02b407bf5540a84fbf8c2cad6.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/8c/ec703739f102f02b407bf5540a84fbf8c2cad6.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/cf559ac6a7367bb376182918d4bbb1870936cf.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/cf559ac6a7367bb376182918d4bbb1870936cf.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/cf559ac6a7367bb376182918d4bbb1870936cf.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/15 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/15/1ba7659a2357d73f98fb46e07f96b07c217c5d.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/15/1ba7659a2357d73f98fb46e07f96b07c217c5d.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/15/1ba7659a2357d73f98fb46e07f96b07c217c5d.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3t64/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/9d mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/9d/687f9f8746e413f3380c2f03446e6b47d195cb.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/9d/687f9f8746e413f3380c2f03446e6b47d195cb.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/9d/687f9f8746e413f3380c2f03446e6b47d195cb.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/8fc0478e31f0eba6efea943bdc0dcbb0bf6c86.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/8fc0478e31f0eba6efea943bdc0dcbb0bf6c86.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/44/8fc0478e31f0eba6efea943bdc0dcbb0bf6c86.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/de mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/de/1c662d3463f8cbffa93fa01125ee5997141133.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/de/1c662d3463f8cbffa93fa01125ee5997141133.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/de/1c662d3463f8cbffa93fa01125ee5997141133.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym install -m0755 -d debian/.debhelper/tabix make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3t64/DEBIAN/shlibs install -m0755 -d debian/libhts3t64/DEBIAN echo "libhts 3 libhts3t64 (>= 1.19+ds)" >> debian/libhts3t64/DEBIAN/shlibs chmod 0644 -- debian/libhts3t64/DEBIAN/shlibs dpkg-gensymbols -plibhts3t64 -Idebian/libhts3t64.symbols -Pdebian/libhts3t64 -edebian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 mv debian/.debhelper/generated/libhts3t64/triggers.new debian/.debhelper/generated/libhts3t64/triggers mv debian/libhts3t64.substvars.new debian/libhts3t64.substvars rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libhts3t64/DEBIAN dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so install -m0755 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol -a install -m0755 -d debian/libhts3t64/DEBIAN echo misc:Depends= >> debian/libhts3t64.substvars echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=151ba7659a2357d73f98fb46e07f96b07c217c5d 3d0f706d3cec270555ab68c3ab5d143ee37e86d3 8cec703739f102f02b407bf5540a84fbf8c2cad6 9a97434543d8effde34192abfab324b2f3a3d227 cecf559ac6a7367bb376182918d4bbb1870936cf" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 chmod 0644 -- debian/libhts3t64/DEBIAN/control install -m0755 -d debian/libhts-dev/DEBIAN echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=448fc0478e31f0eba6efea943bdc0dcbb0bf6c86 9d687f9f8746e413f3380c2f03446e6b47d195cb de1c662d3463f8cbffa93fa01125ee5997141133" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libhts3t64/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3t64 .. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.19+ds-1.1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.19+ds-1.1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.19+ds-1.1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.19+ds-1.1_mips64el.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.19+ds-1.1_mips64el.buildinfo dpkg-genchanges --build=any -O../htslib_1.19+ds-1.1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.19+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-10T09:14:11Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.19+ds-1.1_mips64el.changes: ------------------------------------ Format: 1.8 Date: Wed, 28 Feb 2024 10:41:39 +0000 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.19+ds-1.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lukas Märdian Description: libhts-dev - development files for the HTSlib libhts3t64 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 1062344 Changes: htslib (1.19+ds-1.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062344 Checksums-Sha1: 0f1b00a2d8cb2077ba0f361bd31b4ba7dae30e21 6966 htslib_1.19+ds-1.1_mips64el.buildinfo c959e51937e5de56d6d1c650985e51283816a749 1687428 libhts-dev_1.19+ds-1.1_mips64el.deb 532c0a149f2e9810bb576b75fec51fb25984bedf 1280816 libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb 9444ec0ceefc2dc4ebf77136649e8b03f6be4e74 403348 libhts3t64_1.19+ds-1.1_mips64el.deb f7e926edc5ad7d958c3b78521512220ae54f795c 2769308 tabix-dbgsym_1.19+ds-1.1_mips64el.deb 9d558d238cef1da0a87804bd076f878deba2f882 437464 tabix_1.19+ds-1.1_mips64el.deb Checksums-Sha256: 2d3fb22a0544f13fbb7820e0e72d69d2772aa095fac8b152dd361c9ab22df616 6966 htslib_1.19+ds-1.1_mips64el.buildinfo a0896cfe3edeaddbee6ee26a78194c19ba6ea3d6e6c8b38eb4198a7b6525f6c8 1687428 libhts-dev_1.19+ds-1.1_mips64el.deb 902e6c0f3fcc5fb3e280ebab9c6eb5561363ee284431718fcef72bd21b1e6d59 1280816 libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb 70ae880d178c15098defcbe9efdaafe78a98975829d390adbc36ba10f57135a1 403348 libhts3t64_1.19+ds-1.1_mips64el.deb 48d2b15d1b244ccc4857379101dae3dfadc07a0fd6b9a9ad571e62996abda991 2769308 tabix-dbgsym_1.19+ds-1.1_mips64el.deb 536695defff18d397f0de7628191d9c170f7f729ef7a8c9e0265c9ec7361f369 437464 tabix_1.19+ds-1.1_mips64el.deb Files: f57260ac515e1dfa72f58613d03b4198 6966 science optional htslib_1.19+ds-1.1_mips64el.buildinfo f24b4094a6ab004afc13180ebf059136 1687428 libdevel optional libhts-dev_1.19+ds-1.1_mips64el.deb c4f8f4546a779a4dda43f4d27a42e30d 1280816 debug optional libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb a370c3a2ab7ef907ddc2a577778318a7 403348 libs optional libhts3t64_1.19+ds-1.1_mips64el.deb 9fd9bc84e4e583ec70d4aeba7ebf5138 2769308 debug optional tabix-dbgsym_1.19+ds-1.1_mips64el.deb 409b3b21b285046f2cd5a6181d755fe2 437464 science optional tabix_1.19+ds-1.1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Architecture: mips64el Version: 1.19+ds-1.1 Checksums-Md5: f24b4094a6ab004afc13180ebf059136 1687428 libhts-dev_1.19+ds-1.1_mips64el.deb c4f8f4546a779a4dda43f4d27a42e30d 1280816 libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb a370c3a2ab7ef907ddc2a577778318a7 403348 libhts3t64_1.19+ds-1.1_mips64el.deb 9fd9bc84e4e583ec70d4aeba7ebf5138 2769308 tabix-dbgsym_1.19+ds-1.1_mips64el.deb 409b3b21b285046f2cd5a6181d755fe2 437464 tabix_1.19+ds-1.1_mips64el.deb Checksums-Sha1: c959e51937e5de56d6d1c650985e51283816a749 1687428 libhts-dev_1.19+ds-1.1_mips64el.deb 532c0a149f2e9810bb576b75fec51fb25984bedf 1280816 libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb 9444ec0ceefc2dc4ebf77136649e8b03f6be4e74 403348 libhts3t64_1.19+ds-1.1_mips64el.deb f7e926edc5ad7d958c3b78521512220ae54f795c 2769308 tabix-dbgsym_1.19+ds-1.1_mips64el.deb 9d558d238cef1da0a87804bd076f878deba2f882 437464 tabix_1.19+ds-1.1_mips64el.deb Checksums-Sha256: a0896cfe3edeaddbee6ee26a78194c19ba6ea3d6e6c8b38eb4198a7b6525f6c8 1687428 libhts-dev_1.19+ds-1.1_mips64el.deb 902e6c0f3fcc5fb3e280ebab9c6eb5561363ee284431718fcef72bd21b1e6d59 1280816 libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb 70ae880d178c15098defcbe9efdaafe78a98975829d390adbc36ba10f57135a1 403348 libhts3t64_1.19+ds-1.1_mips64el.deb 48d2b15d1b244ccc4857379101dae3dfadc07a0fd6b9a9ad571e62996abda991 2769308 tabix-dbgsym_1.19+ds-1.1_mips64el.deb 536695defff18d397f0de7628191d9c170f7f729ef7a8c9e0265c9ec7361f369 437464 tabix_1.19+ds-1.1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 10 Apr 2024 09:14:11 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40-5), bsdutils (= 1:2.40-5), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40-5), libbrotli1 (= 1.1.0-2+b3), libbz2-1.0 (= 1.0.8-5.1), libbz2-dev (= 1.0.8-5.1), libc-bin (= 2.37-16), libc-dev-bin (= 2.37-16), libc6 (= 2.37-16), libc6-dev (= 2.37-16), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcom-err2 (= 1.47.0-2.4), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libcurl3t64-gnutls (= 8.7.1-2), libcurl4-gnutls-dev (= 8.7.1-2), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdeflate-dev (= 1.20-1), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-2), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libgssapi-krb5-2 (= 1.20.1-6+b1), libhogweed6t64 (= 3.9.1-2.2), libhtscodecs-dev (= 1.6.0-1+b1), libhtscodecs2 (= 1.6.0-1+b1), libhwasan0 (= 14-20240330-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.20.1-6+b1), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6+b1), libkrb5support0 (= 1.20.1-6+b1), libldap-2.5-0 (= 2.5.16+dfsg-2), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-2), liblzma-dev (= 5.6.1+really5.4.5-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40-5), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.61.0-1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2+b2), libpipeline1 (= 1.5.7-2), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14-20240330-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40-5), libssh2-1t64 (= 1.11.0-4.1+b2), libssl-dev (= 3.2.1-3), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtasn1-6 (= 4.19.0-3+b2), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40-5), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2+b2), perl-base (= 5.38.2-3.2+b2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40-5), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1709116899" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.19+ds-1.1_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 1687428 bytes: control archive=1984 bytes. 1223 bytes, 27 lines control 2361 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.19+ds-1.1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 7195 Depends: libhts3t64 (= 1.19+ds-1.1), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2024-02-28 10:41 ./ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/include/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/include/htslib/ -rw-r--r-- root/root 16469 2023-07-20 15:01 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 22175 2023-01-20 10:05 ./usr/include/htslib/cram.h -rw-r--r-- root/root 15122 2023-07-20 15:01 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 13578 2023-09-08 16:43 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 57362 2023-12-12 14:02 ./usr/include/htslib/hts.h -rw-r--r-- root/root 4307 2023-09-27 14:44 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11729 2023-08-24 15:40 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2022-07-14 09:33 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2022-05-13 15:25 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2022-01-11 12:11 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22903 2023-04-06 07:36 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5189 2023-10-03 15:40 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2022-07-27 10:31 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 9357 2023-10-03 15:40 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11507 2022-08-16 10:42 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11462 2022-07-27 10:31 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 92100 2023-11-11 17:07 ./usr/include/htslib/sam.h -rw-r--r-- root/root 16584 2023-06-05 14:19 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4956 2022-05-13 15:25 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 68936 2023-08-31 15:42 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 6841682 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/libhts.a lrwxrwxrwx root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/libhts.so -> libhts.so.1.19 drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/ -rw-r--r-- root/root 682 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 09:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2022-07-03 07:14 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 3503 2024-02-28 10:41 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 35121 2023-12-12 14:02 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2023-12-15 16:43 ./usr/share/doc/libhts-dev/copyright libhts3t64-dbgsym_1.19+ds-1.1_mips64el.deb ------------------------------------------ new Debian package, version 2.0. size 1280816 bytes: control archive=832 bytes. 571 bytes, 13 lines control 624 bytes, 6 lines md5sums Package: libhts3t64-dbgsym Source: htslib Version: 1.19+ds-1.1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1388 Depends: libhts3t64 (= 1.19+ds-1.1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3t64 Build-Ids: 151ba7659a2357d73f98fb46e07f96b07c217c5d 3d0f706d3cec270555ab68c3ab5d143ee37e86d3 8cec703739f102f02b407bf5540a84fbf8c2cad6 9a97434543d8effde34192abfab324b2f3a3d227 cecf559ac6a7367bb376182918d4bbb1870936cf drwxr-xr-x root/root 0 2024-02-28 10:41 ./ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/15/ -rw-r--r-- root/root 14952 2024-02-28 10:41 ./usr/lib/debug/.build-id/15/1ba7659a2357d73f98fb46e07f96b07c217c5d.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/3d/ -rw-r--r-- root/root 1254544 2024-02-28 10:41 ./usr/lib/debug/.build-id/3d/0f706d3cec270555ab68c3ab5d143ee37e86d3.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/8c/ -rw-r--r-- root/root 39928 2024-02-28 10:41 ./usr/lib/debug/.build-id/8c/ec703739f102f02b407bf5540a84fbf8c2cad6.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/9a/ -rw-r--r-- root/root 53976 2024-02-28 10:41 ./usr/lib/debug/.build-id/9a/97434543d8effde34192abfab324b2f3a3d227.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 25792 2024-02-28 10:41 ./usr/lib/debug/.build-id/ce/cf559ac6a7367bb376182918d4bbb1870936cf.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 12792 2024-02-28 10:41 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 10:41 ./usr/share/doc/libhts3t64-dbgsym -> libhts3t64 libhts3t64_1.19+ds-1.1_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 403348 bytes: control archive=6088 bytes. 1305 bytes, 24 lines control 989 bytes, 13 lines md5sums 33 bytes, 1 lines shlibs 30094 bytes, 929 lines symbols 68 bytes, 2 lines triggers Package: libhts3t64 Source: htslib Version: 1.19+ds-1.1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1381 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3t64-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3t64 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libhts3 (<< 1.19+ds-1.1), libtabixpp (<< 1.0.0-5~), samtools (<< 1.17~) Replaces: libhts-dev (<< 1.13~), libhts3 Provides: libhts3 (= 1.19+ds-1.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2024-02-28 10:41 ./ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/htslib/ -rw-r--r-- root/root 68136 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so -rw-r--r-- root/root 69200 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so -rw-r--r-- root/root 68976 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so -rw-r--r-- root/root 68760 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so -rw-r--r-- root/root 1029752 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.1.19 lrwxrwxrwx root/root 0 2024-02-28 10:41 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.3 -> libhts.so.1.19 drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/libhts3t64/ -rw-r--r-- root/root 3505 2024-02-28 10:41 ./usr/share/doc/libhts3t64/changelog.Debian.gz -rw-r--r-- root/root 35121 2023-12-12 14:02 ./usr/share/doc/libhts3t64/changelog.gz -rw-r--r-- root/root 5897 2023-12-15 16:43 ./usr/share/doc/libhts3t64/copyright drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 54 2024-02-28 10:38 ./usr/share/lintian/overrides/libhts3t64 drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/man/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2024-02-28 10:41 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2024-02-28 10:41 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2024-02-28 10:41 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/man/man7/ -rw-r--r-- root/root 3419 2024-02-28 10:41 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.19+ds-1.1_mips64el.deb ------------------------------------- new Debian package, version 2.0. size 2769308 bytes: control archive=704 bytes. 457 bytes, 12 lines control 407 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.19+ds-1.1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2984 Depends: tabix (= 1.19+ds-1.1) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 448fc0478e31f0eba6efea943bdc0dcbb0bf6c86 9d687f9f8746e413f3380c2f03446e6b47d195cb de1c662d3463f8cbffa93fa01125ee5997141133 drwxr-xr-x root/root 0 2024-02-28 10:41 ./ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 1046416 2024-02-28 10:41 ./usr/lib/debug/.build-id/44/8fc0478e31f0eba6efea943bdc0dcbb0bf6c86.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/9d/ -rw-r--r-- root/root 1072280 2024-02-28 10:41 ./usr/lib/debug/.build-id/9d/687f9f8746e413f3380c2f03446e6b47d195cb.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.build-id/de/ -rw-r--r-- root/root 842928 2024-02-28 10:41 ./usr/lib/debug/.build-id/de/1c662d3463f8cbffa93fa01125ee5997141133.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 76960 2024-02-28 10:41 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 10:41 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.19+ds-1.1_mips64el.deb ------------------------------ new Debian package, version 2.0. size 437464 bytes: control archive=1132 bytes. 990 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.19+ds-1.1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2616 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2024-02-28 10:41 ./ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/bin/ -rwxr-xr-x root/root 757640 2024-02-28 10:41 ./usr/bin/bgzip -rwxr-xr-x root/root 894000 2024-02-28 10:41 ./usr/bin/htsfile -rwxr-xr-x root/root 960608 2024-02-28 10:41 ./usr/bin/tabix drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/doc/tabix/ -rw-r--r-- root/root 3503 2024-02-28 10:41 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 35121 2023-12-12 14:02 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2023-12-15 16:43 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/man/ drwxr-xr-x root/root 0 2024-02-28 10:41 ./usr/share/man/man1/ -rw-r--r-- root/root 2958 2024-02-28 10:41 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1919 2024-02-28 10:41 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3341 2024-02-28 10:41 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1440 B] Get:5 copy:/<>/apt_archive ./ Packages [1525 B] Fetched 3580 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.45.2-1 [895 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-3 [950 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b2 [15.1 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b3 [22.4 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.64-1 [44.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b3 [121 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get:30 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b3 [36.2 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-3 [24.0 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.37-1+b2 [128 kB] Get:42 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b3 [32.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b3 [98.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b3 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b3 [29.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:61 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:62 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:64 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:67 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:68 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:75 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:76 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:77 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:78 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:82 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:83 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:84 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:85 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:107 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:116 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:120 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:126 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:128 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:129 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (78.3 MB/s) Selecting previously unselected package netbase. (Reading database ... 18516 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... 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Preparing to unpack .../128-sbuild-build-depends-lintian-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.14-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... 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Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:amd64 (2.2.7-2+b1) ... Setting up liburi-perl (5.28-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.37-16) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 82844 Build-Time: 101 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 12 Job: htslib_1.19+ds-1.1 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 125 Source-Version: 1.19+ds-1.1 Space: 82844 Status: successful Version: 1.19+ds-1.1 -------------------------------------------------------------------------------- Finished at 2024-04-10T09:14:11Z Build needed 00:02:05, 82844k disk space