sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | htslib 1.20+ds-1 (i386) Tue, 15 Oct 2024 04:03:43 +0000 | +==============================================================================+ Package: htslib Version: 1.20+ds-1 Source Version: 1.20+ds-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.LFcVgQt_fU... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-54Uapo/resolver-GBz18I' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [202 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.9 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9780 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9916 kB] Fetched 30.8 MB in 8s (3976 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.38t64 perl-modules-5.38 Use 'apt autoremove' to remove them. The following NEW packages will be installed: libperl5.40 perl-modules-5.40 The following packages will be upgraded: perl perl-base 2 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 8972 kB of archives. After this operation, 52.5 MB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 perl-modules-5.40 all 5.40.0-6 [3022 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libperl5.40 arm64 5.40.0-6 [4149 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 perl arm64 5.40.0-6 [267 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 perl-base arm64 5.40.0-6 [1534 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8972 kB in 0s (65.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11889 files and directories currently installed.) Preparing to unpack .../perl_5.40.0-6_arm64.deb ... Unpacking perl (5.40.0-6) over (5.38.2-5) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... Unpacking perl-modules-5.40 (5.40.0-6) ... Selecting previously unselected package libperl5.40:arm64. Preparing to unpack .../libperl5.40_5.40.0-6_arm64.deb ... Unpacking libperl5.40:arm64 (5.40.0-6) ... Preparing to unpack .../perl-base_5.40.0-6_arm64.deb ... Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... Setting up perl-base (5.40.0-6) ... Setting up perl-modules-5.40 (5.40.0-6) ... Setting up libperl5.40:arm64 (5.40.0-6) ... Setting up perl (5.40.0-6) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1555 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main htslib 1.20+ds-1 (dsc) [2465 B] Get:2 http://mirror.einval.org/debian unstable/main htslib 1.20+ds-1 (tar) [1531 kB] Get:3 http://mirror.einval.org/debian unstable/main htslib 1.20+ds-1 (diff) [21.3 kB] Fetched 1555 kB in 0s (18.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-54Uapo/htslib-1.20+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-54Uapo' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [846 B] Get:5 copy:/<>/apt_archive ./ Packages [888 B] Fetched 2343 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: libperl5.38t64 perl-modules-5.38 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386 libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3t64:i386 libdebhelper-perl libdeflate-dev:i386 libdeflate0:i386 libelf1t64 libevent-2.1-7t64:i386 libfakeroot libffi8:i386 libfile-stripnondeterminism-perl libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls-dane0t64:i386 libgnutls-openssl27t64:i386 libgnutls28-dev:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6t64:i386 libhtscodecs-dev:i386 libhtscodecs2:i386 libicu72 libidn2-0:i386 libidn2-dev:i386 libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libldap-2.5-0:i386 liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libnettle8t64:i386 libnghttp2-14:i386 libnghttp2-dev:i386 libnghttp3-9:i386 libnghttp3-dev:i386 libngtcp2-16:i386 libngtcp2-crypto-gnutls-dev:i386 libngtcp2-crypto-gnutls8:i386 libngtcp2-dev:i386 libp11-kit-dev:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl-dev:i386 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp-dev:i386 librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1-dev:i386 libssh2-1t64:i386 libssl-dev:i386 libssl3t64:i386 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtasn1-6-dev:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunbound8:i386 libunistring5:i386 libxml2 libzstd-dev:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pkgconf:i386 pkgconf-bin po-debconf sensible-utils zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 libcurl4-doc:i386 libidn-dev:i386 libkrb5-dev:i386 libldap2-dev:i386 gmp-doc:i386 libgmp10-doc:i386 libmpfr-dev:i386 dns-root-data:i386 gnutls-bin:i386 gnutls-doc:i386 krb5-doc:i386 krb5-user:i386 liblzma-doc:i386 libnghttp2-doc:i386 p11-kit-doc:i386 libssl-doc:i386 libstdc++-14-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:i386 ca-certificates:i386 libarchive-cpio-perl krb5-locales:i386 libldap-common:i386 publicsuffix:i386 libsasl2-modules:i386 libtasn1-doc:i386 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli-dev:i386 libbrotli1:i386 libbz2-1.0:i386 libbz2-dev:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libcrypt-dev:i386 libcrypt1:i386 libcurl3t64-gnutls:i386 libcurl4-gnutls-dev:i386 libdb5.3t64:i386 libdebhelper-perl libdeflate-dev:i386 libdeflate0:i386 libelf1t64 libevent-2.1-7t64:i386 libfakeroot libffi8:i386 libfile-stripnondeterminism-perl libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgmp-dev:i386 libgmp10:i386 libgmpxx4ldbl:i386 libgnutls-dane0t64:i386 libgnutls-openssl27t64:i386 libgnutls28-dev:i386 libgnutls30t64:i386 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libhogweed6t64:i386 libhtscodecs-dev:i386 libhtscodecs2:i386 libicu72 libidn2-0:i386 libidn2-dev:i386 libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 libldap-2.5-0:i386 liblzma-dev:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libnettle8t64:i386 libnghttp2-14:i386 libnghttp2-dev:i386 libnghttp3-9:i386 libnghttp3-dev:i386 libngtcp2-16:i386 libngtcp2-crypto-gnutls-dev:i386 libngtcp2-crypto-gnutls8:i386 libngtcp2-dev:i386 libp11-kit-dev:i386 libp11-kit0:i386 libpipeline1 libpkgconf3 libpsl-dev:i386 libpsl5t64:i386 libquadmath0:i386 libquadmath0-i386-cross librtmp-dev:i386 librtmp1:i386 libsasl2-2:i386 libsasl2-modules-db:i386 libssh2-1-dev:i386 libssh2-1t64:i386 libssl-dev:i386 libssl3t64:i386 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6:i386 libtasn1-6-dev:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunbound8:i386 libunistring5:i386 libxml2 libzstd-dev:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db nettle-dev:i386 pkgconf:i386 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils zlib1g:i386 zlib1g-dev:i386 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 119 MB of archives. After this operation, 449 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu-base arm64 14.2.0-6cross1 [46.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 cpp-14-i686-linux-gnu arm64 14.2.0-6cross1 [10.4 MB] Get:19 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:14.2.0-1 [4840 B] Get:20 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.43.1-5 [2442 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.40-3cross1 [1391 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14.2.0-6cross1 [88.2 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14.2.0-6cross1 [135 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14.2.0-6cross1 [26.8 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14.2.0-6cross1 [7368 B] Get:27 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14.2.0-6cross1 [2600 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14.2.0-6cross1 [718 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14.2.0-6cross1 [1054 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14.2.0-6cross1 [231 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-i386-cross all 14.2.0-6cross1 [2581 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu arm64 14.2.0-6cross1 [20.0 MB] Get:33 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:14.2.0-1 [1444 B] Get:34 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.11.2-1cross1 [2266 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.40-3cross1 [1766 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-i386-cross all 14.2.0-6cross1 [2418 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 g++-14-i686-linux-gnu arm64 14.2.0-6cross1 [11.3 MB] Get:38 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:14.2.0-1 [1200 B] Get:39 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:40 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:46 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.36-1 [29.1 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.36-1 [74.4 kB] Get:56 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.2.0-6 [46.7 kB] Get:57 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.2.0-6 [88.2 kB] Get:58 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.40-3 [2673 kB] Get:59 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.2.0-6 [2606 kB] Get:60 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.2.0-6 [7632 B] Get:61 http://mirror.einval.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get:62 http://mirror.einval.org/debian unstable/main i386 libbrotli-dev i386 1.1.0-2+b4 [313 kB] Get:63 http://mirror.einval.org/debian unstable/main i386 libbz2-1.0 i386 1.0.8-6 [38.1 kB] Get:64 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.36-5 [95.5 kB] Get:65 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.36-5 [125 kB] Get:66 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.40-3 [1770 kB] Get:67 http://mirror.einval.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get:68 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get:69 http://mirror.einval.org/debian unstable/main i386 libgmp10 i386 2:6.3.0+dfsg-2+b1 [571 kB] Get:70 http://mirror.einval.org/debian unstable/main i386 libnettle8t64 i386 3.10-1 [316 kB] Get:71 http://mirror.einval.org/debian unstable/main i386 libhogweed6t64 i386 3.10-1 [337 kB] Get:72 http://mirror.einval.org/debian unstable/main i386 libunistring5 i386 1.2-1 [433 kB] Get:73 http://mirror.einval.org/debian unstable/main i386 libidn2-0 i386 2.3.7-2 [129 kB] Get:74 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 libp11-kit0 i386 0.25.5-2 [424 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 libtasn1-6 i386 4.19.0-3+b2 [50.6 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 libgnutls30t64 i386 3.8.6-2 [1443 kB] Get:78 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get:81 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.6+dfsg-1 [286 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1 [83.9 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libssl3t64 i386 3.3.2-1 [2260 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get:85 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libdb5.3t64 i386 5.3.28+dfsg2-8 [760 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.10.1-2 [400 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10 [194 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libunbound8 i386 1.21.1-1 [627 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libgnutls-dane0t64 i386 3.8.6-2 [439 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libgnutls-openssl27t64 i386 3.8.6-2 [439 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libidn2-dev i386 2.3.7-2 [125 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libp11-kit-dev i386 0.25.5-2 [208 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libtasn1-6-dev i386 4.19.0-3+b2 [101 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.2.0-6 [765 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 nettle-dev i386 3.10-1 [1333 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libgnutls28-dev i386 3.8.6-2 [1444 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 pkgconf i386 1.8.1-3 [26.1 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libnghttp2-dev i386 1.63.0-1 [123 kB] Get:114 http://mirror.einval.org/debian unstable/main i386 libnghttp3-dev i386 1.4.0-1 [99.2 kB] Get:115 http://mirror.einval.org/debian unstable/main i386 libngtcp2-crypto-gnutls-dev i386 1.6.0-1 [24.7 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 libngtcp2-dev i386 1.6.0-1 [206 kB] Get:117 http://mirror.einval.org/debian unstable/main i386 libpsl-dev i386 0.21.2-1.1 [78.2 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b4 [72.1 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 libssl-dev i386 3.3.2-1 [2790 kB] Get:121 http://mirror.einval.org/debian unstable/main i386 libssh2-1-dev i386 1.11.0-7 [368 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libcurl4-gnutls-dev i386 8.10.1-2 [531 kB] Get:124 http://mirror.einval.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libdeflate-dev i386 1.22-1 [57.2 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.2.0-6 [138 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.2.0-6 [27.3 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.2.0-6 [1055 kB] Get:129 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.2.0-6 [231 kB] Get:130 http://mirror.einval.org/debian unstable/main i386 libgcc-14-dev i386 14.2.0-6 [2579 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 libhtscodecs-dev i386 1.6.1-1 [2974 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 liblzma5 i386 5.6.2-2 [264 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libstdc++-14-dev i386 14.2.0-6 [2436 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 119 MB in 1s (86.8 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 13977 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package gcc-14-i686-linux-gnu-base:arm64. Preparing to unpack .../015-gcc-14-i686-linux-gnu-base_14.2.0-6cross1_arm64.deb ... Unpacking gcc-14-i686-linux-gnu-base:arm64 (14.2.0-6cross1) ... Selecting previously unselected package cpp-14-i686-linux-gnu. Preparing to unpack .../016-cpp-14-i686-linux-gnu_14.2.0-6cross1_arm64.deb ... Unpacking cpp-14-i686-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package cpp-i686-linux-gnu. Preparing to unpack .../017-cpp-i686-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking cpp-i686-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package binutils-i686-linux-gnu. Preparing to unpack .../018-binutils-i686-linux-gnu_2.43.1-5_arm64.deb ... Unpacking binutils-i686-linux-gnu (2.43.1-5) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../019-gcc-14-cross-base_14.2.0-6cross1_all.deb ... Unpacking gcc-14-cross-base (14.2.0-6cross1) ... Selecting previously unselected package libc6-i386-cross. Preparing to unpack .../020-libc6-i386-cross_2.40-3cross1_all.deb ... Unpacking libc6-i386-cross (2.40-3cross1) ... Selecting previously unselected package libgcc-s1-i386-cross. Preparing to unpack .../021-libgcc-s1-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libgcc-s1-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libgomp1-i386-cross. Preparing to unpack .../022-libgomp1-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libgomp1-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libitm1-i386-cross. Preparing to unpack .../023-libitm1-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libitm1-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libatomic1-i386-cross. Preparing to unpack .../024-libatomic1-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libatomic1-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libasan8-i386-cross. Preparing to unpack .../025-libasan8-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libasan8-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libstdc++6-i386-cross. Preparing to unpack .../026-libstdc++6-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libstdc++6-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libubsan1-i386-cross. Preparing to unpack .../027-libubsan1-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libubsan1-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libquadmath0-i386-cross. Preparing to unpack .../028-libquadmath0-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libquadmath0-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package libgcc-14-dev-i386-cross. Preparing to unpack .../029-libgcc-14-dev-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libgcc-14-dev-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package gcc-14-i686-linux-gnu. Preparing to unpack .../030-gcc-14-i686-linux-gnu_14.2.0-6cross1_arm64.deb ... Unpacking gcc-14-i686-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package gcc-i686-linux-gnu. Preparing to unpack .../031-gcc-i686-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gcc-i686-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package linux-libc-dev-i386-cross. Preparing to unpack .../032-linux-libc-dev-i386-cross_6.11.2-1cross1_all.deb ... Unpacking linux-libc-dev-i386-cross (6.11.2-1cross1) ... Selecting previously unselected package libc6-dev-i386-cross. Preparing to unpack .../033-libc6-dev-i386-cross_2.40-3cross1_all.deb ... Unpacking libc6-dev-i386-cross (2.40-3cross1) ... Selecting previously unselected package libstdc++-14-dev-i386-cross. Preparing to unpack .../034-libstdc++-14-dev-i386-cross_14.2.0-6cross1_all.deb ... Unpacking libstdc++-14-dev-i386-cross (14.2.0-6cross1) ... Selecting previously unselected package g++-14-i686-linux-gnu. Preparing to unpack .../035-g++-14-i686-linux-gnu_14.2.0-6cross1_arm64.deb ... Unpacking g++-14-i686-linux-gnu (14.2.0-6cross1) ... Selecting previously unselected package g++-i686-linux-gnu. Preparing to unpack .../036-g++-i686-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking g++-i686-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package crossbuild-essential-i386. Preparing to unpack .../037-crossbuild-essential-i386_12.12_all.deb ... Unpacking crossbuild-essential-i386 (12.12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../038-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../039-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../040-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../041-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../044-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../046-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../047-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../049-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../050-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../051-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libfakeroot:arm64. Preparing to unpack .../052-libfakeroot_1.36-1_arm64.deb ... Unpacking libfakeroot:arm64 (1.36-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../053-fakeroot_1.36-1_arm64.deb ... Unpacking fakeroot (1.36-1) ... Selecting previously unselected package gcc-14-base:i386. Preparing to unpack .../054-gcc-14-base_14.2.0-6_i386.deb ... Unpacking gcc-14-base:i386 (14.2.0-6) ... Selecting previously unselected package libgcc-s1:i386. Preparing to unpack .../055-libgcc-s1_14.2.0-6_i386.deb ... Unpacking libgcc-s1:i386 (14.2.0-6) ... Selecting previously unselected package libc6:i386. Preparing to unpack .../056-libc6_2.40-3_i386.deb ... Unpacking libc6:i386 (2.40-3) ... Selecting previously unselected package libasan8:i386. Preparing to unpack .../057-libasan8_14.2.0-6_i386.deb ... Unpacking libasan8:i386 (14.2.0-6) ... Selecting previously unselected package libatomic1:i386. Preparing to unpack .../058-libatomic1_14.2.0-6_i386.deb ... Unpacking libatomic1:i386 (14.2.0-6) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../059-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libbrotli-dev:i386. Preparing to unpack .../060-libbrotli-dev_1.1.0-2+b4_i386.deb ... Unpacking libbrotli-dev:i386 (1.1.0-2+b4) ... Selecting previously unselected package libbz2-1.0:i386. Preparing to unpack .../061-libbz2-1.0_1.0.8-6_i386.deb ... Unpacking libbz2-1.0:i386 (1.0.8-6) ... Selecting previously unselected package libcrypt1:i386. Preparing to unpack .../062-libcrypt1_1%3a4.4.36-5_i386.deb ... Unpacking libcrypt1:i386 (1:4.4.36-5) ... Selecting previously unselected package libcrypt-dev:i386. Preparing to unpack .../063-libcrypt-dev_1%3a4.4.36-5_i386.deb ... Unpacking libcrypt-dev:i386 (1:4.4.36-5) ... Selecting previously unselected package libc6-dev:i386. Preparing to unpack .../064-libc6-dev_2.40-3_i386.deb ... Unpacking libc6-dev:i386 (2.40-3) ... Selecting previously unselected package libbz2-dev:i386. Preparing to unpack .../065-libbz2-dev_1.0.8-6_i386.deb ... Unpacking libbz2-dev:i386 (1.0.8-6) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../066-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libgmp10:i386. Preparing to unpack .../067-libgmp10_2%3a6.3.0+dfsg-2+b1_i386.deb ... Unpacking libgmp10:i386 (2:6.3.0+dfsg-2+b1) ... Selecting previously unselected package libnettle8t64:i386. Preparing to unpack .../068-libnettle8t64_3.10-1_i386.deb ... Unpacking libnettle8t64:i386 (3.10-1) ... Selecting previously unselected package libhogweed6t64:i386. Preparing to unpack .../069-libhogweed6t64_3.10-1_i386.deb ... Unpacking libhogweed6t64:i386 (3.10-1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../070-libunistring5_1.2-1_i386.deb ... Unpacking libunistring5:i386 (1.2-1) ... Selecting previously unselected package libidn2-0:i386. Preparing to unpack .../071-libidn2-0_2.3.7-2_i386.deb ... Unpacking libidn2-0:i386 (2.3.7-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../072-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:i386. Preparing to unpack .../073-libp11-kit0_0.25.5-2_i386.deb ... Unpacking libp11-kit0:i386 (0.25.5-2) ... Selecting previously unselected package libtasn1-6:i386. Preparing to unpack .../074-libtasn1-6_4.19.0-3+b2_i386.deb ... Unpacking libtasn1-6:i386 (4.19.0-3+b2) ... Selecting previously unselected package libgnutls30t64:i386. 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Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../087-libldap-2.5-0_2.5.18+dfsg-3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../088-libnghttp2-14_1.63.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.63.0-1) ... Selecting previously unselected package libnghttp3-9:i386. Preparing to unpack .../089-libnghttp3-9_1.4.0-1_i386.deb ... Unpacking libnghttp3-9:i386 (1.4.0-1) ... Selecting previously unselected package libngtcp2-16:i386. Preparing to unpack .../090-libngtcp2-16_1.6.0-1_i386.deb ... Unpacking libngtcp2-16:i386 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:i386. Preparing to unpack .../091-libngtcp2-crypto-gnutls8_1.6.0-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:i386. 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Setting up gcc-14-i686-linux-gnu-base:arm64 (14.2.0-6cross1) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:arm64 (1.36-1) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up linux-libc-dev-i386-cross (6.11.2-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libc6-i386-cross (2.40-3cross1) ... Setting up cpp-14-i686-linux-gnu (14.2.0-6cross1) ... Setting up libquadmath0-i386-cross (14.2.0-6cross1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libatomic1-i386-cross (14.2.0-6cross1) ... Setting up libgomp1-i386-cross (14.2.0-6cross1) ... Setting up libc6-dev-i386-cross (2.40-3cross1) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (14.2.0-6cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up cpp-i686-linux-gnu (4:14.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasan8-i386-cross (14.2.0-6cross1) ... Setting up libstdc++6-i386-cross (14.2.0-6cross1) ... Setting up debhelper (13.20) ... Setting up libubsan1-i386-cross (14.2.0-6cross1) ... Setting up libgcc-14-dev-i386-cross (14.2.0-6cross1) ... Setting up gcc-14-i686-linux-gnu (14.2.0-6cross1) ... Setting up gcc-i686-linux-gnu (4:14.2.0-1) ... Setting up libstdc++-14-dev-i386-cross (14.2.0-6cross1) ... Setting up g++-14-i686-linux-gnu (14.2.0-6cross1) ... Setting up g++-i686-linux-gnu (4:14.2.0-1) ... Setting up crossbuild-essential-i386 (12.12) ... Setting up libgcc-s1:i386 (14.2.0-6) ... Setting up libc6:i386 (2.40-3) ... Setting up libnghttp3-9:i386 (1.4.0-1) ... Setting up libnghttp3-dev:i386 (1.4.0-1) ... Setting up libdb5.3t64:i386 (5.3.28+dfsg2-8) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up libasan8:i386 (14.2.0-6) ... Setting up libtasn1-6:i386 (4.19.0-3+b2) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up libbz2-1.0:i386 (1.0.8-6) ... Setting up libtasn1-6-dev:i386 (4.19.0-3+b2) ... Setting up libstdc++6:i386 (14.2.0-6) ... Setting up libitm1:i386 (14.2.0-6) ... Setting up libhtscodecs2:i386 (1.6.1-1) ... Setting up libzstd1:i386 (1.5.6+dfsg-1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-1) ... Setting up liblzma5:i386 (5.6.2-2) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up libdeflate0:i386 (1.22-1) ... Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10) ... Setting up zlib1g:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:i386 (1:4.4.36-5) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up libngtcp2-dev:i386 (1.6.0-1) ... Setting up libgomp1:i386 (14.2.0-6) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up libhtscodecs-dev:i386 (1.6.1-1) ... Setting up libnettle8t64:i386 (3.10-1) ... Setting up libgmp10:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libquadmath0:i386 (14.2.0-6) ... Setting up libp11-kit0:i386 (0.25.5-2) ... Setting up libunistring5:i386 (1.2-1) ... Setting up libatomic1:i386 (14.2.0-6) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up liblzma-dev:i386 (5.6.2-2) ... Setting up libubsan1:i386 (14.2.0-6) ... Setting up libhogweed6t64:i386 (3.10-1) ... Setting up libcrypt-dev:i386 (1:4.4.36-5) ... Setting up libc6-dev:i386 (2.40-3) ... Setting up libgcc-14-dev:i386 (14.2.0-6) ... Setting up libdeflate-dev:i386 (1.22-1) ... Setting up libstdc++-14-dev:i386 (14.2.0-6) ... Setting up libbrotli-dev:i386 (1.1.0-2+b4) ... Setting up libp11-kit-dev:i386 (0.25.5-2) ... Setting up libbz2-dev:i386 (1.0.8-6) ... Setting up libnghttp2-dev:i386 (1.63.0-1) ... Setting up libssl3t64:i386 (3.3.2-1) ... Setting up libidn2-0:i386 (2.3.7-2) ... Setting up libunbound8:i386 (1.21.1-1) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libssl-dev:i386 (3.3.2-1) ... Setting up libidn2-dev:i386 (2.3.7-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.0-7) ... Setting up libgnutls30t64:i386 (3.8.6-2) ... Setting up libgnutls-openssl27t64:i386 (3.8.6-2) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b1) ... Setting up nettle-dev:i386 (3.10-1) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up libpsl-dev:i386 (0.21.2-1.1) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libssh2-1-dev:i386 (1.11.0-7) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up libgnutls28-dev:i386 (3.8.6-2) ... Setting up libcurl3t64-gnutls:i386 (8.10.1-2) ... Setting up libngtcp2-crypto-gnutls-dev:i386 (1.6.0-1) ... Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libcurl4-gnutls-dev:i386 (8.10.1-2) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-25-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) arm64 (aarch64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-i386-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-i386-cross_14.2.0-6cross1 linux-libc-dev_6.11.2-1 Package versions: apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 binutils-i686-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.2.0-1 cpp-14_14.2.0-6 cpp-14-aarch64-linux-gnu_14.2.0-6 cpp-14-i686-linux-gnu_14.2.0-6cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-i686-linux-gnu_4:14.2.0-1 crossbuild-essential-i386_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-6 g++-14-aarch64-linux-gnu_14.2.0-6 g++-14-i686-linux-gnu_14.2.0-6cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-i686-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-6 gcc-14-aarch64-linux-gnu_14.2.0-6 gcc-14-base_14.2.0-6 gcc-14-cross-base_14.2.0-6cross1 gcc-14-i686-linux-gnu_14.2.0-6cross1 gcc-14-i686-linux-gnu-base_14.2.0-6cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-i686-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.44-1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-6 libasan8-i386-cross_14.2.0-6cross1 libatomic1_14.2.0-6 libatomic1-i386-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libbrotli-dev_1.1.0-2+b4 libbrotli1_1.1.0-2+b4 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-dev_2.40-3 libc6-dev-i386-cross_2.40-3cross1 libc6-i386-cross_2.40-3cross1 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-6 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libcurl3t64-gnutls_8.10.1-2 libcurl4-gnutls-dev_8.10.1-2 libdb5.3t64_5.3.28+dfsg2-8 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdeflate-dev_1.22-1 libdeflate0_1.22-1 libdpkg-perl_1.22.11 libelf1t64_0.191-2 libevent-2.1-7t64_2.1.12-stable-10 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-6 libgcc-14-dev-i386-cross_14.2.0-6cross1 libgcc-s1_14.2.0-6 libgcc-s1-i386-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-2+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgmpxx4ldbl_2:6.3.0+dfsg-2+b1 libgnutls-dane0t64_3.8.6-2 libgnutls-openssl27t64_3.8.6-2 libgnutls28-dev_3.8.6-2 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-6 libgomp1-i386-cross_14.2.0-6cross1 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1 libhtscodecs-dev_1.6.1-1 libhtscodecs2_1.6.1-1 libhwasan0_14.2.0-6 libicu72_72.1-5 libidn2-0_2.3.7-2 libidn2-dev_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-6 libitm1-i386-cross_14.2.0-6cross1 libjansson4_2.14-2+b2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libldap-2.5-0_2.5.18+dfsg-3 liblsan0_14.2.0-6 liblz4-1_1.9.4-3 liblzma-dev_5.6.2-2 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.10-1 libnghttp2-14_1.63.0-1 libnghttp2-dev_1.63.0-1 libnghttp3-9_1.4.0-1 libnghttp3-dev_1.4.0-1 libngtcp2-16_1.6.0-1 libngtcp2-crypto-gnutls-dev_1.6.0-1 libngtcp2-crypto-gnutls8_1.6.0-1 libngtcp2-dev_1.6.0-1 libp11-kit-dev_0.25.5-2 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-6 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-3 libpsl-dev_0.21.2-1.1 libpsl5t64_0.21.2-1.1 libquadmath0_14.2.0-6 libquadmath0-i386-cross_14.2.0-6cross1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libssh2-1-dev_1.11.0-7 libssh2-1t64_1.11.0-7 libssl-dev_3.3.2-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-i386-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-i386-cross_14.2.0-6cross1 libsystemd0_256.7-1 libtasn1-6_4.19.0-3+b2 libtasn1-6-dev_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-6 libubsan1_14.2.0-6 libubsan1-i386-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b1 libudev1_256.7-1 libunbound8_1.21.1-1 libunistring5_1.2-1 libuuid1_2.40.2-9 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b1 libzstd-dev_1.5.6+dfsg-1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.11.2-1 linux-libc-dev-i386-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 nettle-dev_3.10-1 openssl-provider-legacy_3.3.2-1 patch_2.7.6-7 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-6 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3t64, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.20+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3t64 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: d685d071f21fd45109b7a388916dd74d36d3f141 1530935 htslib_1.20+ds.orig.tar.bz2 d4335f01a9048929399a21e6a029228a0d82380c 21272 htslib_1.20+ds-1.debian.tar.xz Checksums-Sha256: 4c7fd2331a58419d310e2de2d649e731bb48e848fcf2ce0c2a4b878731ac024a 1530935 htslib_1.20+ds.orig.tar.bz2 6d7c4f37c09d594238e6ef832649b139f8491033df28ed675e749a45973fff1b 21272 htslib_1.20+ds-1.debian.tar.xz Files: 9b37ee27664bdb6b8114e587a190e3a5 1530935 htslib_1.20+ds.orig.tar.bz2 090feedc9274d23a14e9e075c2decefc 21272 htslib_1.20+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZXJv0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqymRAArg5lobUZNwbuv7wdHUpXjc9N3E89 Hnxwtk8nPd4TFBWzmrzk3mzn1IycZ9mHcBIK6YBcIvFXUaM6BsDIHLe/x8OjpxA8 s1LjllTzbWcuva1ezoxN1Elt9dLbtwobwdtyeCDtepiUB28b6wmZAhZ/wkoTBkg9 aRoqpWV+BDyTisVAChS5mKie6oksDH7/Z14oxy2IAOmbVFRmb/un1TCzy+W0IBt8 E5VCDlhWSDAWAnR7m9FcN93GlAakW3/ncSe2aIDoQzbv2cmR8vWiyswoQwsiaJnR ldSCCgKAcEh9mQZC42W/Fywx5AlqiFUmAnY+0ckdAX0vzJYui9c/h3Gej6TK1H3g DmVtXxwRG1qK1BBW+29LjCIXIU7rTzuPSRjz3y7Q/oy+KVI3WLs2AtwL7H7AOILj 28thoVW+lVDst6GUV1uy5+0Yv5sA3K/pZ/jP4ow6/+j+CINJbX6NBCoJyvXFdprS bUkK/8qHjftudKADJ8+qEqRNZDqe+CcI+p1WQAYhrUECcy5hZsJsAAXK8CwRGgSw U7oIlL1iOK97b8wWJoIOjD1V7dlxol0OcrO4SxfzFOH0+cD3SlhHufBP8fDA7gRY NtEbWRxSr2Aq5dBwW4mEiatALIJ11Qwg8XYXtyi7i6MFl3vrAx+phunvYn0pMKHs TgsVdtbOHYuQcIw= =2Kvd -----END PGP SIGNATURE----- gpgv: Signature made Wed May 29 13:00:45 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htslib_1.20+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.20+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.20+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying fix_sequence_of_linked_libs.patch dpkg-source: info: applying trim-file-prefix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.20+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from htslib-1.20+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a annot-tsv bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_faidx test/test_kfunc test/test_kstring test/test_mod test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3t64/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3 cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp htslib.pc.in debian/ cp debian/i386-htslib.pc.in ./htslib.pc.in # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes \ && autoconf \ && dh_auto_configure -- \ --enable-libcurl \ --enable-gcs \ --enable-s3 \ --enable-plugins \ --with-plugin-dir='/usr/lib/i386-linux-gnu/htslib' \ --with-external-htscodecs \ --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/i386-linux-gnu/htslib' ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=i686-linux-gnu --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/usr/lib/i386-linux-gnu/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/i386-linux-gnu/htslib checking for i686-linux-gnu-gcc... i686-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether i686-linux-gnu-gcc accepts -g... yes checking for i686-linux-gnu-gcc option to enable C11 features... none needed checking for i686-linux-gnu-ranlib... i686-linux-gnu-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for i686-linux-gnu-gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for i686-linux-gnu-pkg-config... /usr/bin/i686-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for i686-linux-gnu-gcc option to enable large file support... -D_FILE_OFFSET_BITS=64 checking shared library type for i686-linux-gnu... plain .so checking whether the linker supports versioned symbols... yes checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... i686-pc-linux-gnu checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/i386-linux-gnu make -j1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/<>' i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.20"' > version.h printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 'i686-linux-gnu-gcc' \ '-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2' \ '-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects' \ '-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic' \ '-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm ' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ > config_vars.h i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_mods.o sam_mods.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/i386-linux-gnu/htslib\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o i686-linux-gnu-ranlib libhts.a i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam_mods.pico sam_mods.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/i386-linux-gnu/htslib\" -fPIC -c -o plugin.pico plugin.c i686-linux-gnu-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o annot-tsv.o annot-tsv.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c i686-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c i686-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c i686-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c i686-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup_mod.o test/pileup_mod.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_faidx.o test/test_faidx.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c i686-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3t64/ debian/libhts3t64/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/i386-linux-gnu install -m0755 -d /<>/htslib-1.20\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse -mfpmath=sse -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/i386-linux-gnu make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/i386-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig if test -n "/usr/lib/i386-linux-gnu/htslib"; then mkdir -p -m 755 /<>/debian/tmp/usr/lib/i386-linux-gnu/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.1.20 ln -sf libhts.so.1.20 /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so ln -sf libhts.so.1.20 /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/i386-linux-gnu#g;s#@-PACKAGE_VERSION@#1.20#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc install -p annot-tsv bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/usr/lib/i386-linux-gnu/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.a install -p -m 644 annot-tsv.1 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -m0755 -d debian/libhts3t64/usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/htslib debian/tmp/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/tmp/usr/lib/i386-linux-gnu/libhts.so.3 debian/libhts3t64/usr/lib/i386-linux-gnu/ install -m0755 -d debian/libhts3t64/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man5/ install -m0755 -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -m0755 -d debian/libhts-dev/usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libhts.a debian/tmp/usr/lib/i386-linux-gnu/libhts.so debian/libhts-dev/usr/lib/i386-linux-gnu/ install -m0755 -d debian/libhts-dev/usr/lib/i386-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/i386-linux-gnu/pkgconfig/ install -m0755 -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/copyright debian/libhts3t64/usr/share/doc/libhts3t64/copyright install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -m0755 -d debian/libhts3t64/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_lintian -a install -m0755 -d debian/libhts3t64/usr/share/lintian/overrides install -p -m0644 debian/libhts3t64.lintian-overrides debian/libhts3t64/usr/share/lintian/overrides/libhts3t64 dh_perl -a dh_link -a rm -f debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.3 ln -s libhts.so.1.20 debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.3 rm -f debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.so ln -s libhts.so.1.20 debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.so install -m0755 -d debian/tabix/usr/share/man/man1 rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3t64 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -m0755 -d debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug -- debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 dwz: debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20: DWARF compression not beneficial - old size 756069 new size 778178 i686-linux-gnu-objcopy --compress-debug-sections debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug chmod 0644 -- debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug install -m0755 -d debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/tabix/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix i686-linux-gnu-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug chmod 0644 -- debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/60 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/60/ccc0a8d834d132fd2d48fb69565376ac493a79.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/60/ccc0a8d834d132fd2d48fb69565376ac493a79.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/60/ccc0a8d834d132fd2d48fb69565376ac493a79.debug debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/95 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/95/82718d7a737a2f987b7382195d89e78d2bb963.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/95/82718d7a737a2f987b7382195d89e78d2bb963.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/95/82718d7a737a2f987b7382195d89e78d2bb963.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/439cf9d9d3c93303be9e9eeeebdd00ea2170c4.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/439cf9d9d3c93303be9e9eeeebdd00ea2170c4.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/439cf9d9d3c93303be9e9eeeebdd00ea2170c4.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c1 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c1/47b16bd74eaa1e18b79e4333ec747201965104.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c1/47b16bd74eaa1e18b79e4333ec747201965104.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c1/47b16bd74eaa1e18b79e4333ec747201965104.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c9 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c9/bb17c04dce00e52071bd6dd1612f4849d4ce52.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c9/bb17c04dce00e52071bd6dd1612f4849d4ce52.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/c9/bb17c04dce00e52071bd6dd1612f4849d4ce52.debug debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3t64/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/7dab1d04012cefb459c9f7df09cd0be3a0d003.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/7dab1d04012cefb459c9f7df09cd0be3a0d003.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/7dab1d04012cefb459c9f7df09cd0be3a0d003.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dc i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dc/1e0370fcb9c583767968253ae2b00156709a8c.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dc/1e0370fcb9c583767968253ae2b00156709a8c.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dc/1e0370fcb9c583767968253ae2b00156709a8c.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cf i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cf/7045fdc42bc73eaead3399c4ce79ed51bdc46c.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cf/7045fdc42bc73eaead3399c4ce79ed51bdc46c.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/cf/7045fdc42bc73eaead3399c4ce79ed51bdc46c.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym install -m0755 -d debian/.debhelper/tabix make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3t64/DEBIAN/shlibs install -m0755 -d debian/libhts3t64/DEBIAN echo "libhts 3 libhts3t64 (>= 1.20+ds)" >> debian/libhts3t64/DEBIAN/shlibs chmod 0644 -- debian/libhts3t64/DEBIAN/shlibs dpkg-gensymbols -plibhts3t64 -Idebian/libhts3t64.symbols -Pdebian/libhts3t64 -edebian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 mv debian/.debhelper/generated/libhts3t64/triggers.new debian/.debhelper/generated/libhts3t64/triggers mv debian/libhts3t64.substvars.new debian/libhts3t64.substvars rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libhts3t64/DEBIAN dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/i386-linux-gnu/libhts.so.1.20 debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/i386-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol -a install -m0755 -d debian/libhts3t64/DEBIAN echo misc:Depends= >> debian/libhts3t64.substvars echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=60ccc0a8d834d132fd2d48fb69565376ac493a79 9582718d7a737a2f987b7382195d89e78d2bb963 be439cf9d9d3c93303be9e9eeeebdd00ea2170c4 c147b16bd74eaa1e18b79e4333ec747201965104 c9bb17c04dce00e52071bd6dd1612f4849d4ce52" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 chmod 0644 -- debian/libhts3t64/DEBIAN/control install -m0755 -d debian/libhts-dev/DEBIAN echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=cf7045fdc42bc73eaead3399c4ce79ed51bdc46c dc1e0370fcb9c583767968253ae2b00156709a8c df7dab1d04012cefb459c9f7df09cd0be3a0d003" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libhts3t64/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3t64 .. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.20+ds-1_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.20+ds-1_i386.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.20+ds-1_i386.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.20+ds-1_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.20+ds-1_i386.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.20+ds-1_i386.buildinfo dpkg-genchanges --build=any -O../htslib_1.20+ds-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.20+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-15T04:12:27Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.20+ds-1_i386.changes: ------------------------------ Format: 1.8 Date: Wed, 29 May 2024 12:25:07 +0200 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1.20+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libhts-dev - development files for the HTSlib libhts3t64 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.20+ds-1) unstable; urgency=medium . * New upstream version 1.20+ds * d/copyright: update copyright year. * d/control: declare compliance to standards version 4.7.0. * Patch fix_float_precision: refresh. * testShebang.patch: unfuzz. * d/libhts3t64.symbols: introduce new upstream functions. Checksums-Sha1: dcd988f09893b17e45ecd28aab6dd7060ef77f55 7339 htslib_1.20+ds-1_i386.buildinfo 1977d704d06d10573bee36fb136b3a949db26392 1692804 libhts-dev_1.20+ds-1_i386.deb ccb04321f37b9706d1735b68dca1882cf5148427 1190420 libhts3t64-dbgsym_1.20+ds-1_i386.deb 1f1aa64877ef77554e415e42c1b40bf240aa4b78 500056 libhts3t64_1.20+ds-1_i386.deb f0bc1f798e2dafdefbe7337045918397047f45b9 2745900 tabix-dbgsym_1.20+ds-1_i386.deb 3f93a3b3cb5728e43617c92b2c1bfc3859215d77 535624 tabix_1.20+ds-1_i386.deb Checksums-Sha256: a0691e9c36a461a3f9e243784a6489e6df0bc64b2fbd968591b4f5f8599de787 7339 htslib_1.20+ds-1_i386.buildinfo 7037cc8aea98fef3f7baf5851e6ab6183e30f3326d913e1af028db919da34f5e 1692804 libhts-dev_1.20+ds-1_i386.deb 6d374c6f1f0d9b78881950384b58d05ad211e0986d3c5bbcd21b3ccc139f3047 1190420 libhts3t64-dbgsym_1.20+ds-1_i386.deb 0e3995612844ae9ead5ca684bed17561b1972fc276228a15e0cf53eb90536924 500056 libhts3t64_1.20+ds-1_i386.deb 9ee6d780b9f055e1468bc3f375a16ac0565c228e164ace2da518403244fb4d4c 2745900 tabix-dbgsym_1.20+ds-1_i386.deb 7cc895091f92bdd4e893630910ec5935a8683214e8e555aa6a7ce361b43d276e 535624 tabix_1.20+ds-1_i386.deb Files: 40d9283bf2a4a501f6a76a848c73c332 7339 science optional htslib_1.20+ds-1_i386.buildinfo c01c34bcd1004282224d7ad9ab59aa92 1692804 libdevel optional libhts-dev_1.20+ds-1_i386.deb 3289e1aa8a884f6b82d6b0fd9d626cfd 1190420 debug optional libhts3t64-dbgsym_1.20+ds-1_i386.deb 8d380daedb833458b8ae978dd8221ee4 500056 libs optional libhts3t64_1.20+ds-1_i386.deb 99dd939a97e9fd5d9188910a9dcfcfff 2745900 debug optional tabix-dbgsym_1.20+ds-1_i386.deb d28d2deed042961b4730ac53d025bb84 535624 science optional tabix_1.20+ds-1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Architecture: i386 Version: 1.20+ds-1 Checksums-Md5: c01c34bcd1004282224d7ad9ab59aa92 1692804 libhts-dev_1.20+ds-1_i386.deb 3289e1aa8a884f6b82d6b0fd9d626cfd 1190420 libhts3t64-dbgsym_1.20+ds-1_i386.deb 8d380daedb833458b8ae978dd8221ee4 500056 libhts3t64_1.20+ds-1_i386.deb 99dd939a97e9fd5d9188910a9dcfcfff 2745900 tabix-dbgsym_1.20+ds-1_i386.deb d28d2deed042961b4730ac53d025bb84 535624 tabix_1.20+ds-1_i386.deb Checksums-Sha1: 1977d704d06d10573bee36fb136b3a949db26392 1692804 libhts-dev_1.20+ds-1_i386.deb ccb04321f37b9706d1735b68dca1882cf5148427 1190420 libhts3t64-dbgsym_1.20+ds-1_i386.deb 1f1aa64877ef77554e415e42c1b40bf240aa4b78 500056 libhts3t64_1.20+ds-1_i386.deb f0bc1f798e2dafdefbe7337045918397047f45b9 2745900 tabix-dbgsym_1.20+ds-1_i386.deb 3f93a3b3cb5728e43617c92b2c1bfc3859215d77 535624 tabix_1.20+ds-1_i386.deb Checksums-Sha256: 7037cc8aea98fef3f7baf5851e6ab6183e30f3326d913e1af028db919da34f5e 1692804 libhts-dev_1.20+ds-1_i386.deb 6d374c6f1f0d9b78881950384b58d05ad211e0986d3c5bbcd21b3ccc139f3047 1190420 libhts3t64-dbgsym_1.20+ds-1_i386.deb 0e3995612844ae9ead5ca684bed17561b1972fc276228a15e0cf53eb90536924 500056 libhts3t64_1.20+ds-1_i386.deb 9ee6d780b9f055e1468bc3f375a16ac0565c228e164ace2da518403244fb4d4c 2745900 tabix-dbgsym_1.20+ds-1_i386.deb 7cc895091f92bdd4e893630910ec5935a8683214e8e555aa6a7ce361b43d276e 535624 tabix_1.20+ds-1_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Tue, 15 Oct 2024 04:12:25 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-5), binutils-aarch64-linux-gnu (= 2.43.1-5), binutils-common (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-6), cpp-14-aarch64-linux-gnu (= 14.2.0-6), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-6), g++-14-aarch64-linux-gnu (= 14.2.0-6), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-6), gcc-14-aarch64-linux-gnu (= 14.2.0-6), gcc-14-base (= 14.2.0-6), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-6), libatomic1 (= 14.2.0-6), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libbrotli-dev (= 1.1.0-2+b4), libbrotli1 (= 1.1.0-2+b4), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-6), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libcurl3t64-gnutls (= 8.10.1-2), libcurl4-gnutls-dev (= 8.10.1-2), libdb5.3t64 (= 5.3.28+dfsg2-8), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdeflate-dev (= 1.22-1), libdeflate0 (= 1.22-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libevent-2.1-7t64 (= 2.1.12-stable-10), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-6), libgcc-s1 (= 14.2.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-2+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1), libgnutls-dane0t64 (= 3.8.6-2), libgnutls-openssl27t64 (= 3.8.6-2), libgnutls28-dev (= 3.8.6-2), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-6), libgprofng0 (= 2.43.1-5), libgssapi-krb5-2 (= 1.21.3-3), libhogweed6t64 (= 3.10-1), libhtscodecs-dev (= 1.6.1-1), libhtscodecs2 (= 1.6.1-1), libhwasan0 (= 14.2.0-6), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libidn2-dev (= 2.3.7-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-6), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), libldap-2.5-0 (= 2.5.18+dfsg-3), liblsan0 (= 14.2.0-6), liblzma-dev (= 5.6.2-2), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.63.0-1), libnghttp2-dev (= 1.63.0-1), libnghttp3-9 (= 1.4.0-1), libnghttp3-dev (= 1.4.0-1), libngtcp2-16 (= 1.6.0-1), libngtcp2-crypto-gnutls-dev (= 1.6.0-1), libngtcp2-crypto-gnutls8 (= 1.6.0-1), libngtcp2-dev (= 1.6.0-1), libp11-kit-dev (= 0.25.5-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-3), libpsl-dev (= 0.21.2-1.1), libpsl5t64 (= 0.21.2-1.1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-8), libsasl2-modules-db (= 2.1.28+dfsg1-8), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsmartcols1 (= 2.40.2-9), libssh2-1-dev (= 1.11.0-7), libssh2-1t64 (= 1.11.0-7), libssl-dev (= 3.3.2-1), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-6), libstdc++6 (= 14.2.0-6), libsystemd0 (= 256.7-1), libtasn1-6 (= 4.19.0-3+b2), libtasn1-6-dev (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-6), libubsan1 (= 14.2.0-6), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-1), libunbound8 (= 1.21.1-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libzstd-dev (= 1.5.6+dfsg-1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.2-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), nettle-dev (= 3.10-1), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), util-linux (= 2.40.2-9), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1716978307" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.20+ds-1_i386.deb ----------------------------- new Debian package, version 2.0. size 1692804 bytes: control archive=1984 bytes. 1215 bytes, 27 lines control 2343 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.20+ds-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 5039 Depends: libhts3t64 (= 1.20+ds-1), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/include/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/include/htslib/ -rw-r--r-- root/root 16469 2023-07-20 15:01 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 22175 2023-01-20 10:05 ./usr/include/htslib/cram.h -rw-r--r-- root/root 15122 2023-07-20 15:01 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 13578 2023-09-08 16:43 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 57362 2024-04-15 14:09 ./usr/include/htslib/hts.h -rw-r--r-- root/root 4445 2024-02-08 14:40 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11729 2023-08-24 15:40 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2022-07-14 09:33 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2022-05-13 15:25 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2022-01-11 12:11 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22903 2023-04-06 07:36 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5189 2023-10-03 15:40 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2022-07-27 10:31 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 9357 2023-10-03 15:40 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11507 2022-08-16 10:42 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11462 2022-07-27 10:31 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 92100 2023-11-11 17:07 ./usr/include/htslib/sam.h -rw-r--r-- root/root 16584 2023-06-05 14:19 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4992 2024-03-26 10:03 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 68936 2023-08-31 15:42 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 4633112 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/libhts.so -> libhts.so.1.20 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 692 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 09:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2022-07-03 07:14 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 3580 2024-05-29 10:25 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/libhts-dev/copyright libhts3t64-dbgsym_1.20+ds-1_i386.deb ------------------------------------ new Debian package, version 2.0. size 1190420 bytes: control archive=816 bytes. 563 bytes, 13 lines control 615 bytes, 6 lines md5sums Package: libhts3t64-dbgsym Source: htslib Version: 1.20+ds-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1248 Depends: libhts3t64 (= 1.20+ds-1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3t64 Build-Ids: 60ccc0a8d834d132fd2d48fb69565376ac493a79 9582718d7a737a2f987b7382195d89e78d2bb963 be439cf9d9d3c93303be9e9eeeebdd00ea2170c4 c147b16bd74eaa1e18b79e4333ec747201965104 c9bb17c04dce00e52071bd6dd1612f4849d4ce52 drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/60/ -rw-r--r-- root/root 1126748 2024-05-29 10:25 ./usr/lib/debug/.build-id/60/ccc0a8d834d132fd2d48fb69565376ac493a79.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/95/ -rw-r--r-- root/root 20736 2024-05-29 10:25 ./usr/lib/debug/.build-id/95/82718d7a737a2f987b7382195d89e78d2bb963.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/be/ -rw-r--r-- root/root 49908 2024-05-29 10:25 ./usr/lib/debug/.build-id/be/439cf9d9d3c93303be9e9eeeebdd00ea2170c4.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/c1/ -rw-r--r-- root/root 35224 2024-05-29 10:25 ./usr/lib/debug/.build-id/c1/47b16bd74eaa1e18b79e4333ec747201965104.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/c9/ -rw-r--r-- root/root 12788 2024-05-29 10:25 ./usr/lib/debug/.build-id/c9/bb17c04dce00e52071bd6dd1612f4849d4ce52.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 12496 2024-05-29 10:25 ./usr/lib/debug/.dwz/i386-linux-gnu/libhts3t64.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/share/doc/libhts3t64-dbgsym -> libhts3t64 libhts3t64_1.20+ds-1_i386.deb ----------------------------- new Debian package, version 2.0. size 500056 bytes: control archive=6104 bytes. 1295 bytes, 24 lines control 944 bytes, 13 lines md5sums 33 bytes, 1 lines shlibs 30193 bytes, 932 lines symbols 66 bytes, 2 lines triggers Package: libhts3t64 Source: htslib Version: 1.20+ds-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 1219 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3t64-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3t64 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libhts3 (<< 1.20+ds-1), libtabixpp (<< 1.0.0-5~), samtools (<< 1.17~) Replaces: libhts-dev (<< 1.13~), libhts3 Provides: libhts3 (= 1.20+ds-1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/htslib/ -rw-r--r-- root/root 13748 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/htslib/hfile_gcs.so -rw-r--r-- root/root 34228 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/htslib/hfile_libcurl.so -rw-r--r-- root/root 42420 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/htslib/hfile_s3.so -rw-r--r-- root/root 26036 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/htslib/hfile_s3_write.so -rw-r--r-- root/root 1021380 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/libhts.so.1.20 lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/lib/i386-linux-gnu/libhts.so.3 -> libhts.so.1.20 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/libhts3t64/ -rw-r--r-- root/root 3581 2024-05-29 10:25 ./usr/share/doc/libhts3t64/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/libhts3t64/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/libhts3t64/copyright drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 54 2024-02-28 10:53 ./usr/share/lintian/overrides/libhts3t64 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2024-05-29 10:25 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2024-05-29 10:25 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2024-05-29 10:25 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man7/ -rw-r--r-- root/root 3416 2024-05-29 10:25 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.20+ds-1_i386.deb ------------------------------- new Debian package, version 2.0. size 2745900 bytes: control archive=696 bytes. 449 bytes, 12 lines control 398 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.20+ds-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 2855 Depends: tabix (= 1.20+ds-1) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: cf7045fdc42bc73eaead3399c4ce79ed51bdc46c dc1e0370fcb9c583767968253ae2b00156709a8c df7dab1d04012cefb459c9f7df09cd0be3a0d003 drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/cf/ -rw-r--r-- root/root 801988 2024-05-29 10:25 ./usr/lib/debug/.build-id/cf/7045fdc42bc73eaead3399c4ce79ed51bdc46c.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/dc/ -rw-r--r-- root/root 1000944 2024-05-29 10:25 ./usr/lib/debug/.build-id/dc/1e0370fcb9c583767968253ae2b00156709a8c.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 1026608 2024-05-29 10:25 ./usr/lib/debug/.build-id/df/7dab1d04012cefb459c9f7df09cd0be3a0d003.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 77608 2024-05-29 10:25 ./usr/lib/debug/.dwz/i386-linux-gnu/tabix.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.20+ds-1_i386.deb ------------------------ new Debian package, version 2.0. size 535624 bytes: control archive=1132 bytes. 984 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.20+ds-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 2610 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/bin/ -rwxr-xr-x root/root 759464 2024-05-29 10:25 ./usr/bin/bgzip -rwxr-xr-x root/root 911048 2024-05-29 10:25 ./usr/bin/htsfile -rwxr-xr-x root/root 935624 2024-05-29 10:25 ./usr/bin/tabix drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/tabix/ -rw-r--r-- root/root 3580 2024-05-29 10:25 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man1/ -rw-r--r-- root/root 3060 2024-05-29 10:25 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1917 2024-05-29 10:25 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3420 2024-05-29 10:25 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1428 B] Get:5 copy:/<>/apt_archive ./ Packages [1505 B] Fetched 3548 B in 0s (191 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libnetaddr-ip-perl : Depends: perlapi-5.38.2 but it is not installable libvariable-magic-perl : Depends: perlapi-5.38.2 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libxs-parse-keyword-perl (>= 0.35) but it is not going to be installed libtext-markdown-discount-perl : Depends: perlapi-5.38.2 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.38.2 but it is not installable libterm-readkey-perl : Depends: perlapi-5.38.2 but it is not installable libtext-xslate-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.38.2 but it is not installable libhtml-parser-perl : Depends: perlapi-5.38.2 but it is not installable libsub-identify-perl : Depends: perlapi-5.38.2 but it is not installable libberkeleydb-perl : Depends: perlapi-5.38.2 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.38.2 but it is not installable libparams-util-perl : Depends: perlapi-5.38.2 but it is not installable libtime-moment-perl : Depends: perlapi-5.38.2 but it is not installable libclone-perl : Depends: perlapi-5.38.2 but it is not installable libyaml-libyaml-perl : Depends: perlapi-5.38.2 but it is not installable libtext-levenshteinxs-perl : Depends: perlapi-5.38.2 but it is not installable libxml-libxml-perl : Depends: perlapi-5.38.2 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.38.2 but it is not installable libsub-name-perl : Depends: perlapi-5.38.2 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:i386 : Depends: lintian:arm64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 69828 Build-Time: 432 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 50 Job: htslib_1.20+ds-1 Lintian: error Machine Architecture: arm64 Package: htslib Package-Time: 524 Source-Version: 1.20+ds-1 Space: 69828 Status: successful Version: 1.20+ds-1 -------------------------------------------------------------------------------- Finished at 2024-10-15T04:12:27Z Build needed 00:08:44, 69828k disk space