sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.20+ds-1 (mips64el) Mon, 12 Aug 2024 00:28:28 +0000 | +==============================================================================+ Package: htslib Version: 1.20+ds-1 Source Version: 1.20+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-d7e881d1-4610-413f-8851-4f15b712214a' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-H9Xvlc/resolver-xLhwfQ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main mips64el Packages [9622 kB] Fetched 9622 kB in 1s (10.6 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1555 kB of source archives. Get:1 http://localhost:3142/debian sid/main htslib 1.20+ds-1 (dsc) [2465 B] Get:2 http://localhost:3142/debian sid/main htslib 1.20+ds-1 (tar) [1531 kB] Get:3 http://localhost:3142/debian sid/main htslib 1.20+ds-1 (diff) [21.3 kB] Fetched 1555 kB in 0s (111 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-H9Xvlc/htslib-1.20+ds' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-H9Xvlc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [858 B] Get:5 copy:/<>/apt_archive ./ Packages [904 B] Fetched 2371 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli-dev:mips64el libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1t64 libevent-2.1-7t64:mips64el libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp-dev:mips64el libgmp10:mips64el libgmpxx4ldbl:mips64el libgnutls-dane0t64:mips64el libgnutls-openssl27t64:mips64el libgnutls28-dev:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libidn2-dev:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1t64 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp2-dev:mips64el libnghttp3-9:mips64el libnghttp3-dev:mips64el libngtcp2-16:mips64el libngtcp2-crypto-gnutls-dev:mips64el libngtcp2-crypto-gnutls8:mips64el libngtcp2-dev:mips64el libp11-kit-dev:mips64el libp11-kit0:mips64el libpipeline1 libpkgconf3 libpsl-dev:mips64el libpsl5t64:mips64el librtmp-dev:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1-dev:mips64el libssh2-1t64:mips64el libssl-dev:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtasn1-6-dev:mips64el libtool libuchardet0 libunbound8:mips64el libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd-dev:mips64el libzstd1:mips64el m4 man-db nettle-dev:mips64el pkgconf:mips64el pkgconf-bin po-debconf sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make binutils-multiarch gcc-14-doc manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el libcurl4-doc:mips64el libidn-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el gmp-doc:mips64el libgmp10-doc:mips64el libmpfr-dev:mips64el dns-root-data:mips64el gnutls-bin:mips64el gnutls-doc:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libnghttp2-doc:mips64el p11-kit-doc:mips64el libssl-doc:mips64el libstdc++-14-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl krb5-locales:mips64el libldap-common:mips64el publicsuffix:mips64el libsasl2-modules:mips64el libtasn1-doc:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libbrotli-dev:mips64el libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3t64-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3t64:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libelf1t64 libevent-2.1-7t64:mips64el libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp-dev:mips64el libgmp10:mips64el libgmpxx4ldbl:mips64el libgnutls-dane0t64:mips64el libgnutls-openssl27t64:mips64el libgnutls28-dev:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6t64:mips64el libhtscodecs-dev:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libidn2-dev:mips64el libio-string-perl libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1t64 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp2-dev:mips64el libnghttp3-9:mips64el libnghttp3-dev:mips64el libngtcp2-16:mips64el libngtcp2-crypto-gnutls-dev:mips64el libngtcp2-crypto-gnutls8:mips64el libngtcp2-dev:mips64el libp11-kit-dev:mips64el libp11-kit0:mips64el libpipeline1 libpkgconf3 libpsl-dev:mips64el libpsl5t64:mips64el librtmp-dev:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libssh2-1-dev:mips64el libssh2-1t64:mips64el libssl-dev:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtasn1-6-dev:mips64el libtool libuchardet0 libunbound8:mips64el libunistring5:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd-dev:mips64el libzstd1:mips64el m4 man-db nettle-dev:mips64el pkgconf:mips64el pkgconf-bin po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 99.8 MB of archives. After this operation, 402 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40.2-6 [96.7 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.1-3 [1414 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.22.5-2 [723 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.42.90.20240720-2cross2 [2835 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-14-mips64el-linux-gnuabi64-base amd64 14.2.0-1cross2 [46.0 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-14-mips64el-linux-gnuabi64 amd64 14.2.0-1cross2 [9692 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [3408 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base-mipsen all 14.2.0-1cross2 [41.2 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.39-6cross2 [1098 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 14.2.0-1cross2 [78.5 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 14.2.0-1cross2 [115 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 14.2.0-1cross2 [7208 B] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-14-dev-mips64el-cross all 14.2.0-1cross2 [330 kB] Get:30 http://localhost:3142/debian sid/main amd64 gcc-14-mips64el-linux-gnuabi64 amd64 14.2.0-1cross2 [18.5 MB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1460 B] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 14.2.0-1cross2 [588 kB] Get:33 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.39-6cross2 [1592 kB] Get:34 http://localhost:3142/debian sid/main amd64 libstdc++-14-dev-mips64el-cross all 14.2.0-1cross2 [2422 kB] Get:35 http://localhost:3142/debian sid/main amd64 g++-14-mips64el-linux-gnuabi64 amd64 14.2.0-1cross2 [10.7 MB] Get:36 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1212 B] Get:37 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-3 [44.8 kB] Get:38 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:39 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:40 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:41 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-4 [313 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:46 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:48 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:50 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:51 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:52 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:53 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:55 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:57 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:58 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:59 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:60 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:61 http://localhost:3142/debian sid/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:62 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:63 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:64 http://localhost:3142/debian sid/main amd64 debhelper all 13.16 [891 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.35.1-1.1 [28.7 kB] Get:66 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.35.1-1.1 [74.7 kB] Get:67 http://localhost:3142/debian sid/main mips64el gcc-14-base mips64el 14.2.0-2 [46.0 kB] Get:68 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 14.2.0-2 [78.4 kB] Get:69 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.39-6 [2392 kB] Get:70 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 14.2.0-2 [7464 B] Get:71 http://localhost:3142/debian sid/main mips64el libbrotli1 mips64el 1.1.0-2+b4 [320 kB] Get:72 http://localhost:3142/debian sid/main mips64el libbrotli-dev mips64el 1.1.0-2+b4 [334 kB] Get:73 http://localhost:3142/debian sid/main mips64el libbz2-1.0 mips64el 1.0.8-5.1 [39.2 kB] Get:74 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.36-4 [94.1 kB] Get:75 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.36-4 [127 kB] Get:76 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.39-6 [1596 kB] Get:77 http://localhost:3142/debian sid/main mips64el libbz2-dev mips64el 1.0.8-5.1 [34.1 kB] Get:78 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.47.1-1 [22.6 kB] Get:79 http://localhost:3142/debian sid/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-2+b1 [546 kB] Get:80 http://localhost:3142/debian sid/main mips64el libnettle8t64 mips64el 3.10-1 [308 kB] Get:81 http://localhost:3142/debian sid/main mips64el libhogweed6t64 mips64el 3.10-1 [325 kB] Get:82 http://localhost:3142/debian sid/main mips64el libunistring5 mips64el 1.2-1 [398 kB] Get:83 http://localhost:3142/debian sid/main mips64el libidn2-0 mips64el 2.3.7-2 [126 kB] Get:84 http://localhost:3142/debian sid/main mips64el libffi8 mips64el 3.4.6-1 [23.5 kB] Get:85 http://localhost:3142/debian sid/main mips64el libp11-kit0 mips64el 0.25.5-2 [344 kB] Get:86 http://localhost:3142/debian sid/main mips64el libtasn1-6 mips64el 4.19.0-3+b2 [46.0 kB] Get:87 http://localhost:3142/debian sid/main mips64el libgnutls30t64 mips64el 3.8.6-2 [1266 kB] Get:88 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.21.3-3 [30.5 kB] Get:89 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.21.3-3 [86.2 kB] Get:90 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-3 [8500 B] Get:91 http://localhost:3142/debian sid/main mips64el libzstd1 mips64el 1.5.6+dfsg-1 [294 kB] Get:92 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.3.dfsg+really1.3.1-1 [79.0 kB] Get:93 http://localhost:3142/debian sid/main mips64el libssl3t64 mips64el 3.3.1-2 [1677 kB] Get:94 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.21.3-3 [288 kB] Get:95 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.21.3-3 [119 kB] Get:96 http://localhost:3142/debian sid/main mips64el libdb5.3t64 mips64el 5.3.28+dfsg2-7 [602 kB] Get:97 http://localhost:3142/debian sid/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg1-7 [18.8 kB] Get:98 http://localhost:3142/debian sid/main mips64el libsasl2-2 mips64el 2.1.28+dfsg1-7 [52.2 kB] Get:99 http://localhost:3142/debian sid/main mips64el libldap-2.5-0 mips64el 2.5.18+dfsg-2 [161 kB] Get:100 http://localhost:3142/debian sid/main mips64el libnghttp2-14 mips64el 1.62.1-2 [69.5 kB] Get:101 http://localhost:3142/debian sid/main mips64el libnghttp3-9 mips64el 1.4.0-1 [58.1 kB] Get:102 http://localhost:3142/debian sid/main mips64el libngtcp2-16 mips64el 1.6.0-1 [111 kB] Get:103 http://localhost:3142/debian sid/main mips64el libngtcp2-crypto-gnutls8 mips64el 1.6.0-1 [18.0 kB] Get:104 http://localhost:3142/debian sid/main mips64el libpsl5t64 mips64el 0.21.2-1.1 [56.6 kB] Get:105 http://localhost:3142/debian sid/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b4 [53.5 kB] Get:106 http://localhost:3142/debian sid/main mips64el libssh2-1t64 mips64el 1.11.0-7 [204 kB] Get:107 http://localhost:3142/debian sid/main mips64el libcurl3t64-gnutls mips64el 8.9.1-2 [432 kB] Get:108 http://localhost:3142/debian sid/main mips64el libevent-2.1-7t64 mips64el 2.1.12-stable-10 [160 kB] Get:109 http://localhost:3142/debian sid/main mips64el libunbound8 mips64el 1.20.0-1+b1 [529 kB] Get:110 http://localhost:3142/debian sid/main mips64el libgnutls-dane0t64 mips64el 3.8.6-2 [436 kB] Get:111 http://localhost:3142/debian sid/main mips64el libgnutls-openssl27t64 mips64el 3.8.6-2 [436 kB] Get:112 http://localhost:3142/debian sid/main mips64el libidn2-dev mips64el 2.3.7-2 [124 kB] Get:113 http://localhost:3142/debian sid/main mips64el libp11-kit-dev mips64el 0.25.5-2 [208 kB] Get:114 http://localhost:3142/debian sid/main mips64el libtasn1-6-dev mips64el 4.19.0-3+b2 [100 kB] Get:115 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 14.2.0-2 [635 kB] Get:116 http://localhost:3142/debian sid/main mips64el libgmpxx4ldbl mips64el 2:6.3.0+dfsg-2+b1 [329 kB] Get:117 http://localhost:3142/debian sid/main mips64el libgmp-dev mips64el 2:6.3.0+dfsg-2+b1 [656 kB] Get:118 http://localhost:3142/debian sid/main mips64el nettle-dev mips64el 3.10-1 [1334 kB] Get:119 http://localhost:3142/debian sid/main mips64el libgnutls28-dev mips64el 3.8.6-2 [1382 kB] Get:120 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-3 [36.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-3 [29.9 kB] Get:122 http://localhost:3142/debian sid/main mips64el pkgconf mips64el 1.8.1-3 [26.1 kB] Get:123 http://localhost:3142/debian sid/main mips64el libnghttp2-dev mips64el 1.62.1-2 [117 kB] Get:124 http://localhost:3142/debian sid/main mips64el libnghttp3-dev mips64el 1.4.0-1 [89.5 kB] Get:125 http://localhost:3142/debian sid/main mips64el libngtcp2-crypto-gnutls-dev mips64el 1.6.0-1 [24.6 kB] Get:126 http://localhost:3142/debian sid/main mips64el libngtcp2-dev mips64el 1.6.0-1 [177 kB] Get:127 http://localhost:3142/debian sid/main mips64el libpsl-dev mips64el 0.21.2-1.1 [78.1 kB] Get:128 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.3.dfsg+really1.3.1-1 [912 kB] Get:129 http://localhost:3142/debian sid/main mips64el librtmp-dev mips64el 2.4+20151223.gitfa8646d.1-2+b4 [71.2 kB] Get:130 http://localhost:3142/debian sid/main mips64el libssl-dev mips64el 3.3.1-2 [2589 kB] Get:131 http://localhost:3142/debian sid/main mips64el libssh2-1-dev mips64el 1.11.0-7 [364 kB] Get:132 http://localhost:3142/debian sid/main mips64el libzstd-dev mips64el 1.5.6+dfsg-1 [379 kB] Get:133 http://localhost:3142/debian sid/main mips64el libcurl4-gnutls-dev mips64el 8.9.1-2 [598 kB] Get:134 http://localhost:3142/debian sid/main mips64el libdeflate0 mips64el 1.20-1 [37.0 kB] Get:135 http://localhost:3142/debian sid/main mips64el libdeflate-dev mips64el 1.20-1 [46.1 kB] Get:136 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 14.2.0-2 [117 kB] Get:137 http://localhost:3142/debian sid/main mips64el libgcc-14-dev mips64el 14.2.0-2 [329 kB] Get:138 http://localhost:3142/debian sid/main mips64el libhtscodecs2 mips64el 1.6.0-1+b1 [69.7 kB] Get:139 http://localhost:3142/debian sid/main mips64el libhtscodecs-dev mips64el 1.6.0-1+b1 [2977 kB] Get:140 http://localhost:3142/debian sid/main mips64el liblzma5 mips64el 5.6.2-2 [250 kB] Get:141 http://localhost:3142/debian sid/main mips64el liblzma-dev mips64el 5.6.2-2 [302 kB] Get:142 http://localhost:3142/debian sid/main mips64el libstdc++-14-dev mips64el 14.2.0-2 [2420 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 99.8 MB in 1s (169 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12814 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... 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Selecting previously unselected package gcc-14-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../018-gcc-14-mips64el-linux-gnuabi64-base_14.2.0-1cross2_amd64.deb ... Unpacking gcc-14-mips64el-linux-gnuabi64-base:amd64 (14.2.0-1cross2) ... Selecting previously unselected package cpp-14-mips64el-linux-gnuabi64. Preparing to unpack .../019-cpp-14-mips64el-linux-gnuabi64_14.2.0-1cross2_amd64.deb ... Unpacking cpp-14-mips64el-linux-gnuabi64 (14.2.0-1cross2) ... Selecting previously unselected package cpp-mips64el-linux-gnuabi64. Preparing to unpack .../020-cpp-mips64el-linux-gnuabi64_4%3a14.2.0-1_amd64.deb ... Unpacking cpp-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../021-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package gcc-14-cross-base-mipsen. Preparing to unpack .../022-gcc-14-cross-base-mipsen_14.2.0-1cross2_all.deb ... Unpacking gcc-14-cross-base-mipsen (14.2.0-1cross2) ... Selecting previously unselected package libc6-mips64el-cross. Preparing to unpack .../023-libc6-mips64el-cross_2.39-6cross2_all.deb ... Unpacking libc6-mips64el-cross (2.39-6cross2) ... Selecting previously unselected package libgcc-s1-mips64el-cross. Preparing to unpack .../024-libgcc-s1-mips64el-cross_14.2.0-1cross2_all.deb ... Unpacking libgcc-s1-mips64el-cross (14.2.0-1cross2) ... Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../025-libgomp1-mips64el-cross_14.2.0-1cross2_all.deb ... Unpacking libgomp1-mips64el-cross (14.2.0-1cross2) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../026-libatomic1-mips64el-cross_14.2.0-1cross2_all.deb ... Unpacking libatomic1-mips64el-cross (14.2.0-1cross2) ... Selecting previously unselected package libgcc-14-dev-mips64el-cross. 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Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../037-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../038-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../039-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../040-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../041-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. 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Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../062-debhelper_13.16_all.deb ... Unpacking debhelper (13.16) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../063-libfakeroot_1.35.1-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.35.1-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../064-fakeroot_1.35.1-1.1_amd64.deb ... Unpacking fakeroot (1.35.1-1.1) ... Selecting previously unselected package gcc-14-base:mips64el. Preparing to unpack .../065-gcc-14-base_14.2.0-2_mips64el.deb ... Unpacking gcc-14-base:mips64el (14.2.0-2) ... Selecting previously unselected package libgcc-s1:mips64el. Preparing to unpack .../066-libgcc-s1_14.2.0-2_mips64el.deb ... Unpacking libgcc-s1:mips64el (14.2.0-2) ... Selecting previously unselected package libc6:mips64el. Preparing to unpack .../067-libc6_2.39-6_mips64el.deb ... Unpacking libc6:mips64el (2.39-6) ... Selecting previously unselected package libatomic1:mips64el. Preparing to unpack .../068-libatomic1_14.2.0-2_mips64el.deb ... Unpacking libatomic1:mips64el (14.2.0-2) ... Selecting previously unselected package libbrotli1:mips64el. Preparing to unpack .../069-libbrotli1_1.1.0-2+b4_mips64el.deb ... Unpacking libbrotli1:mips64el (1.1.0-2+b4) ... Selecting previously unselected package libbrotli-dev:mips64el. Preparing to unpack .../070-libbrotli-dev_1.1.0-2+b4_mips64el.deb ... Unpacking libbrotli-dev:mips64el (1.1.0-2+b4) ... Selecting previously unselected package libbz2-1.0:mips64el. Preparing to unpack .../071-libbz2-1.0_1.0.8-5.1_mips64el.deb ... Unpacking libbz2-1.0:mips64el (1.0.8-5.1) ... Selecting previously unselected package libcrypt1:mips64el. Preparing to unpack .../072-libcrypt1_1%3a4.4.36-4_mips64el.deb ... Unpacking libcrypt1:mips64el (1:4.4.36-4) ... Selecting previously unselected package libcrypt-dev:mips64el. Preparing to unpack .../073-libcrypt-dev_1%3a4.4.36-4_mips64el.deb ... Unpacking libcrypt-dev:mips64el (1:4.4.36-4) ... Selecting previously unselected package libc6-dev:mips64el. Preparing to unpack .../074-libc6-dev_2.39-6_mips64el.deb ... Unpacking libc6-dev:mips64el (2.39-6) ... Selecting previously unselected package libbz2-dev:mips64el. Preparing to unpack .../075-libbz2-dev_1.0.8-5.1_mips64el.deb ... Unpacking libbz2-dev:mips64el (1.0.8-5.1) ... Selecting previously unselected package libcom-err2:mips64el. Preparing to unpack .../076-libcom-err2_1.47.1-1_mips64el.deb ... Unpacking libcom-err2:mips64el (1.47.1-1) ... Selecting previously unselected package libgmp10:mips64el. 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Selecting previously unselected package libnghttp3-9:mips64el. Preparing to unpack .../099-libnghttp3-9_1.4.0-1_mips64el.deb ... Unpacking libnghttp3-9:mips64el (1.4.0-1) ... Selecting previously unselected package libngtcp2-16:mips64el. Preparing to unpack .../100-libngtcp2-16_1.6.0-1_mips64el.deb ... Unpacking libngtcp2-16:mips64el (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:mips64el. Preparing to unpack .../101-libngtcp2-crypto-gnutls8_1.6.0-1_mips64el.deb ... Unpacking libngtcp2-crypto-gnutls8:mips64el (1.6.0-1) ... Selecting previously unselected package libpsl5t64:mips64el. Preparing to unpack .../102-libpsl5t64_0.21.2-1.1_mips64el.deb ... Unpacking libpsl5t64:mips64el (0.21.2-1.1) ... Selecting previously unselected package librtmp1:mips64el. Preparing to unpack .../103-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_mips64el.deb ... Unpacking librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:mips64el. Preparing to unpack .../104-libssh2-1t64_1.11.0-7_mips64el.deb ... Unpacking libssh2-1t64:mips64el (1.11.0-7) ... Selecting previously unselected package libcurl3t64-gnutls:mips64el. Preparing to unpack .../105-libcurl3t64-gnutls_8.9.1-2_mips64el.deb ... Unpacking libcurl3t64-gnutls:mips64el (8.9.1-2) ... Selecting previously unselected package libevent-2.1-7t64:mips64el. Preparing to unpack .../106-libevent-2.1-7t64_2.1.12-stable-10_mips64el.deb ... Unpacking libevent-2.1-7t64:mips64el (2.1.12-stable-10) ... Selecting previously unselected package libunbound8:mips64el. Preparing to unpack .../107-libunbound8_1.20.0-1+b1_mips64el.deb ... Unpacking libunbound8:mips64el (1.20.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:mips64el. Preparing to unpack .../108-libgnutls-dane0t64_3.8.6-2_mips64el.deb ... Unpacking libgnutls-dane0t64:mips64el (3.8.6-2) ... Selecting previously unselected package libgnutls-openssl27t64:mips64el. Preparing to unpack .../109-libgnutls-openssl27t64_3.8.6-2_mips64el.deb ... Unpacking libgnutls-openssl27t64:mips64el (3.8.6-2) ... Selecting previously unselected package libidn2-dev:mips64el. Preparing to unpack .../110-libidn2-dev_2.3.7-2_mips64el.deb ... Unpacking libidn2-dev:mips64el (2.3.7-2) ... Selecting previously unselected package libp11-kit-dev:mips64el. Preparing to unpack .../111-libp11-kit-dev_0.25.5-2_mips64el.deb ... Unpacking libp11-kit-dev:mips64el (0.25.5-2) ... Selecting previously unselected package libtasn1-6-dev:mips64el. Preparing to unpack .../112-libtasn1-6-dev_4.19.0-3+b2_mips64el.deb ... Unpacking libtasn1-6-dev:mips64el (4.19.0-3+b2) ... Selecting previously unselected package libstdc++6:mips64el. Preparing to unpack .../113-libstdc++6_14.2.0-2_mips64el.deb ... Unpacking libstdc++6:mips64el (14.2.0-2) ... Selecting previously unselected package libgmpxx4ldbl:mips64el. 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Selecting previously unselected package pkgconf:mips64el. Preparing to unpack .../120-pkgconf_1.8.1-3_mips64el.deb ... Unpacking pkgconf:mips64el (1.8.1-3) ... Selecting previously unselected package libnghttp2-dev:mips64el. Preparing to unpack .../121-libnghttp2-dev_1.62.1-2_mips64el.deb ... Unpacking libnghttp2-dev:mips64el (1.62.1-2) ... Selecting previously unselected package libnghttp3-dev:mips64el. Preparing to unpack .../122-libnghttp3-dev_1.4.0-1_mips64el.deb ... Unpacking libnghttp3-dev:mips64el (1.4.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:mips64el. Preparing to unpack .../123-libngtcp2-crypto-gnutls-dev_1.6.0-1_mips64el.deb ... Unpacking libngtcp2-crypto-gnutls-dev:mips64el (1.6.0-1) ... Selecting previously unselected package libngtcp2-dev:mips64el. Preparing to unpack .../124-libngtcp2-dev_1.6.0-1_mips64el.deb ... Unpacking libngtcp2-dev:mips64el (1.6.0-1) ... Selecting previously unselected package libpsl-dev:mips64el. 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Unpacking libgcc-14-dev:mips64el (14.2.0-2) ... Selecting previously unselected package libhtscodecs2:mips64el. Preparing to unpack .../136-libhtscodecs2_1.6.0-1+b1_mips64el.deb ... Unpacking libhtscodecs2:mips64el (1.6.0-1+b1) ... Selecting previously unselected package libhtscodecs-dev:mips64el. Preparing to unpack .../137-libhtscodecs-dev_1.6.0-1+b1_mips64el.deb ... Unpacking libhtscodecs-dev:mips64el (1.6.0-1+b1) ... Selecting previously unselected package liblzma5:mips64el. Preparing to unpack .../138-liblzma5_5.6.2-2_mips64el.deb ... Unpacking liblzma5:mips64el (5.6.2-2) ... Selecting previously unselected package liblzma-dev:mips64el. Preparing to unpack .../139-liblzma-dev_5.6.2-2_mips64el.deb ... Unpacking liblzma-dev:mips64el (5.6.2-2) ... Selecting previously unselected package libstdc++-14-dev:mips64el. Preparing to unpack .../140-libstdc++-14-dev_14.2.0-2_mips64el.deb ... Unpacking libstdc++-14-dev:mips64el (14.2.0-2) ... 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Setting up libfakeroot:amd64 (1.35.1-1.1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-14-cross-base-mipsen (14.2.0-1cross2) ... Setting up libpkgconf3:amd64 (1.8.1-3) ... Setting up libc6-dev-mips64el-cross (2.39-6cross2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up gcc-14-mips64el-linux-gnuabi64-base:amd64 (14.2.0-1cross2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgomp1-mips64el-cross (14.2.0-1cross2) ... Setting up libgcc-s1-mips64el-cross (14.2.0-1cross2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libatomic1-mips64el-cross (14.2.0-1cross2) ... Setting up libtool (2.4.7-7) ... Setting up cpp-14-mips64el-linux-gnuabi64 (14.2.0-1cross2) ... Setting up pkgconf:mips64el (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgcc-14-dev-mips64el-cross (14.2.0-1cross2) ... Setting up ucf (3.0043+nmu1) ... Setting up libstdc++6-mips64el-cross (14.2.0-1cross2) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up cpp-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up libstdc++-14-dev-mips64el-cross (14.2.0-1cross2) ... Setting up gcc-14-mips64el-linux-gnuabi64 (14.2.0-1cross2) ... Setting up g++-14-mips64el-linux-gnuabi64 (14.2.0-1cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up debhelper (13.16) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14.2.0-2) ... Setting up libc6:mips64el (2.39-6) ... Setting up libnghttp3-9:mips64el (1.4.0-1) ... Setting up libnghttp3-dev:mips64el (1.4.0-1) ... Setting up libdb5.3t64:mips64el (5.3.28+dfsg2-7) ... Setting up libffi8:mips64el (3.4.6-1) ... Setting up libtasn1-6:mips64el (4.19.0-3+b2) ... Setting up libngtcp2-16:mips64el (1.6.0-1) ... Setting up libbz2-1.0:mips64el (1.0.8-5.1) ... Setting up libtasn1-6-dev:mips64el (4.19.0-3+b2) ... Setting up libstdc++6:mips64el (14.2.0-2) ... Setting up libhtscodecs2:mips64el (1.6.0-1+b1) ... Setting up libzstd1:mips64el (1.5.6+dfsg-1) ... Setting up libkeyutils1:mips64el (1.6.3-3) ... Setting up libzstd-dev:mips64el (1.5.6+dfsg-1) ... Setting up liblzma5:mips64el (5.6.2-2) ... Setting up libbrotli1:mips64el (1.1.0-2+b4) ... Setting up libnghttp2-14:mips64el (1.62.1-2) ... Setting up libdeflate0:mips64el (1.20-1) ... Setting up libevent-2.1-7t64:mips64el (2.1.12-stable-10) ... Setting up zlib1g:mips64el (1:1.3.dfsg+really1.3.1-1) ... Setting up libcrypt1:mips64el (1:4.4.36-4) ... Setting up libcom-err2:mips64el (1.47.1-1) ... Setting up libngtcp2-dev:mips64el (1.6.0-1) ... Setting up libgomp1:mips64el (14.2.0-2) ... Setting up libkrb5support0:mips64el (1.21.3-3) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg1-7) ... Setting up libhtscodecs-dev:mips64el (1.6.0-1+b1) ... Setting up libnettle8t64:mips64el (3.10-1) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-2+b1) ... Setting up libp11-kit0:mips64el (0.25.5-2) ... Setting up libunistring5:mips64el (1.2-1) ... Setting up libatomic1:mips64el (14.2.0-2) ... Setting up libk5crypto3:mips64el (1.21.3-3) ... Setting up liblzma-dev:mips64el (5.6.2-2) ... Setting up libhogweed6t64:mips64el (3.10-1) ... Setting up libcrypt-dev:mips64el (1:4.4.36-4) ... Setting up libc6-dev:mips64el (2.39-6) ... Setting up libgcc-14-dev:mips64el (14.2.0-2) ... Setting up libdeflate-dev:mips64el (1.20-1) ... Setting up libstdc++-14-dev:mips64el (14.2.0-2) ... Setting up libbrotli-dev:mips64el (1.1.0-2+b4) ... Setting up libp11-kit-dev:mips64el (0.25.5-2) ... Setting up libbz2-dev:mips64el (1.0.8-5.1) ... Setting up libnghttp2-dev:mips64el (1.62.1-2) ... Setting up libssl3t64:mips64el (3.3.1-2) ... Setting up libidn2-0:mips64el (2.3.7-2) ... Setting up libunbound8:mips64el (1.20.0-1+b1) ... Setting up libgmpxx4ldbl:mips64el (2:6.3.0+dfsg-2+b1) ... Setting up libssl-dev:mips64el (3.3.1-2) ... Setting up libidn2-dev:mips64el (2.3.7-2) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg1-7) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg+really1.3.1-1) ... Setting up libkrb5-3:mips64el (1.21.3-3) ... Setting up libssh2-1t64:mips64el (1.11.0-7) ... Setting up libgnutls30t64:mips64el (3.8.6-2) ... Setting up libgnutls-openssl27t64:mips64el (3.8.6-2) ... Setting up libgmp-dev:mips64el (2:6.3.0+dfsg-2+b1) ... Setting up nettle-dev:mips64el (3.10-1) ... Setting up libpsl5t64:mips64el (0.21.2-1.1) ... Setting up libldap-2.5-0:mips64el (2.5.18+dfsg-2) ... Setting up libpsl-dev:mips64el (0.21.2-1.1) ... Setting up libgnutls-dane0t64:mips64el (3.8.6-2) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libgssapi-krb5-2:mips64el (1.21.3-3) ... Setting up libssh2-1-dev:mips64el (1.11.0-7) ... Setting up libngtcp2-crypto-gnutls8:mips64el (1.6.0-1) ... Setting up libgnutls28-dev:mips64el (3.8.6-2) ... Setting up libcurl3t64-gnutls:mips64el (8.9.1-2) ... Setting up libngtcp2-crypto-gnutls-dev:mips64el (1.6.0-1) ... Setting up librtmp-dev:mips64el (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libcurl4-gnutls-dev:mips64el (8.9.1-2) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) amd64 (x86_64) Toolchain package versions: binutils_2.43-2 dpkg-dev_1.22.11 g++-14_14.2.0-2 gcc-14_14.2.0-2 libc6-dev_2.39-6 libstdc++-14-dev_14.2.0-2 libstdc++-14-dev-mips64el-cross_14.2.0-1cross2 libstdc++6_14.2.0-2 libstdc++6-mips64el-cross_14.2.0-1cross2 linux-libc-dev_6.10.3-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1+b1 binutils_2.43-2 binutils-common_2.43-2 binutils-mips64el-linux-gnuabi64_2.42.90.20240720-2cross2 binutils-x86-64-linux-gnu_2.43-2 bsdextrautils_2.40.2-6 bsdutils_1:2.40.2-6 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-14_14.2.0-2 cpp-14-mips64el-linux-gnuabi64_14.2.0-1cross2 cpp-14-x86-64-linux-gnu_14.2.0-2 cpp-mips64el-linux-gnuabi64_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-cross_2.6.20 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.35.1-1.1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-14_14.2.0-2 g++-14-mips64el-linux-gnuabi64_14.2.0-1cross2 g++-14-x86-64-linux-gnu_14.2.0-2 g++-mips64el-linux-gnuabi64_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-14_14.2.0-2 gcc-14-base_14.2.0-2 gcc-14-cross-base-mipsen_14.2.0-1cross2 gcc-14-mips64el-linux-gnuabi64_14.2.0-1cross2 gcc-14-mips64el-linux-gnuabi64-base_14.2.0-1cross2 gcc-14-x86-64-linux-gnu_14.2.0-2 gcc-mips64el-linux-gnuabi64_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-2 libatomic1_14.2.0-2 libatomic1-mips64el-cross_14.2.0-1cross2 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43-2 libblkid1_2.40.2-6 libbrotli-dev_1.1.0-2+b4 libbrotli1_1.1.0-2+b4 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libc6-dev-mips64el-cross_2.39-6cross2 libc6-mips64el-cross_2.39-6cross2 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-2 libcom-err2_1.47.1-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.43-2 libctf0_2.43-2 libcurl3t64-gnutls_8.9.1-2 libcurl4-gnutls-dev_8.9.1-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.20-1 libdeflate0_1.20-1 libdpkg-perl_1.22.11 libelf1t64_0.191-2 libevent-2.1-7t64_2.1.12-stable-10 libfakeroot_1.35.1-1.1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.0-1 libfile-which-perl_1.27-2 libgcc-14-dev_14.2.0-2 libgcc-14-dev-mips64el-cross_14.2.0-1cross2 libgcc-s1_14.2.0-2 libgcc-s1-mips64el-cross_14.2.0-1cross2 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-2+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgmpxx4ldbl_2:6.3.0+dfsg-2+b1 libgnutls-dane0t64_3.8.6-2 libgnutls-openssl27t64_3.8.6-2 libgnutls28-dev_3.8.6-2 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-2 libgomp1-mips64el-cross_14.2.0-1cross2 libgpg-error0_1.50-3 libgprofng0_2.43-2 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1 libhtscodecs-dev_1.6.0-1+b1 libhtscodecs2_1.6.0-1+b1 libhwasan0_14.2.0-2 libicu72_72.1-5 libidn2-0_2.3.7-2 libidn2-dev_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.2.0-2 libjansson4_2.14-2+b2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libldap-2.5-0_2.5.18+dfsg-2 liblocale-gettext-perl_1.07-7 liblsan0_14.2.0-2 liblz4-1_1.9.4-3 liblzma-dev_5.6.2-2 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-6 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.10-1 libnghttp2-14_1.62.1-2 libnghttp2-dev_1.62.1-2 libnghttp3-9_1.4.0-1 libnghttp3-dev_1.4.0-1 libngtcp2-16_1.6.0-1 libngtcp2-crypto-gnutls-dev_1.6.0-1 libngtcp2-crypto-gnutls8_1.6.0-1 libngtcp2-dev_1.6.0-1 libp11-kit-dev_0.25.5-2 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-3 libpsl-dev_0.21.2-1.1 libpsl5t64_0.21.2-1.1 libquadmath0_14.2.0-2 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-7 libsasl2-modules-db_2.1.28+dfsg1-7 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b4 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.7-1 libsframe1_2.43-2 libsmartcols1_2.40.2-6 libssh2-1-dev_1.11.0-7 libssh2-1t64_1.11.0-7 libssl-dev_3.3.1-2 libssl3t64_3.3.1-2 libstdc++-14-dev_14.2.0-2 libstdc++-14-dev-mips64el-cross_14.2.0-1cross2 libstdc++6_14.2.0-2 libstdc++6-mips64el-cross_14.2.0-1cross2 libsystemd0_256.4-3 libtasn1-6_4.19.0-3+b2 libtasn1-6-dev_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-2 libubsan1_14.2.0-2 libuchardet0_0.0.8-1+b1 libudev1_256.4-3 libunbound8_1.20.0-1+b1 libunistring5_1.2-1 libuuid1_2.40.2-6 libxml-libxml-perl_2.0207+dfsg+really+2.0134-4 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd-dev_1.5.6+dfsg-1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.3-1 login_1:4.16.0-2+really2.40.2-6 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-3 mawk_1.3.4.20240622-2 mount_2.40.2-6 ncurses-base_6.5-2 ncurses-bin_6.5-2 nettle-dev_3.10-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.38.2-5 perl-base_5.38.2-5 perl-modules-5.38_5.38.2-5 pkgconf_1.8.1-3 pkgconf-bin_1.8.1-3 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-1 tar_1.35+dfsg-3 tzdata_2024a-4 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.2-6 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3t64, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.20+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev (>= 1.0) Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3t64 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: d685d071f21fd45109b7a388916dd74d36d3f141 1530935 htslib_1.20+ds.orig.tar.bz2 d4335f01a9048929399a21e6a029228a0d82380c 21272 htslib_1.20+ds-1.debian.tar.xz Checksums-Sha256: 4c7fd2331a58419d310e2de2d649e731bb48e848fcf2ce0c2a4b878731ac024a 1530935 htslib_1.20+ds.orig.tar.bz2 6d7c4f37c09d594238e6ef832649b139f8491033df28ed675e749a45973fff1b 21272 htslib_1.20+ds-1.debian.tar.xz Files: 9b37ee27664bdb6b8114e587a190e3a5 1530935 htslib_1.20+ds.orig.tar.bz2 090feedc9274d23a14e9e075c2decefc 21272 htslib_1.20+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZXJv0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqymRAArg5lobUZNwbuv7wdHUpXjc9N3E89 Hnxwtk8nPd4TFBWzmrzk3mzn1IycZ9mHcBIK6YBcIvFXUaM6BsDIHLe/x8OjpxA8 s1LjllTzbWcuva1ezoxN1Elt9dLbtwobwdtyeCDtepiUB28b6wmZAhZ/wkoTBkg9 aRoqpWV+BDyTisVAChS5mKie6oksDH7/Z14oxy2IAOmbVFRmb/un1TCzy+W0IBt8 E5VCDlhWSDAWAnR7m9FcN93GlAakW3/ncSe2aIDoQzbv2cmR8vWiyswoQwsiaJnR ldSCCgKAcEh9mQZC42W/Fywx5AlqiFUmAnY+0ckdAX0vzJYui9c/h3Gej6TK1H3g DmVtXxwRG1qK1BBW+29LjCIXIU7rTzuPSRjz3y7Q/oy+KVI3WLs2AtwL7H7AOILj 28thoVW+lVDst6GUV1uy5+0Yv5sA3K/pZ/jP4ow6/+j+CINJbX6NBCoJyvXFdprS bUkK/8qHjftudKADJ8+qEqRNZDqe+CcI+p1WQAYhrUECcy5hZsJsAAXK8CwRGgSw U7oIlL1iOK97b8wWJoIOjD1V7dlxol0OcrO4SxfzFOH0+cD3SlhHufBP8fDA7gRY NtEbWRxSr2Aq5dBwW4mEiatALIJ11Qwg8XYXtyi7i6MFl3vrAx+phunvYn0pMKHs TgsVdtbOHYuQcIw= =2Kvd -----END PGP SIGNATURE----- gpgv: Signature made Wed May 29 13:00:45 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./htslib_1.20+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.20+ds.orig.tar.bz2 dpkg-source: info: unpacking htslib_1.20+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying cram_to_bam_export.patch dpkg-source: info: applying fix_sequence_of_linked_libs.patch dpkg-source: info: applying trim-file-prefix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.sQyFUB0Av5/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-d7e881d1-4610-413f-8851-4f15b712214a SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.20+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from htslib-1.20+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* test/faidx/FAIL* \ test/longrefs/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* \ header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f libhts.so libhts.so.* rm -f libhts.a annot-tsv bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_bgzf test/test_expr test/test_faidx test/test_kfunc test/test_kstring test/test_mod test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3t64/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp -an --reflink=auto config.guess debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3.tmp debian/.debhelper/bucket/files/ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3 cp -f /usr/share/misc/config.guess ./config.guess cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead mv debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b.tmp debian/.debhelper/bucket/files/465c5fe67c7d36b72e808812716445d4d38d4b94734ca8d36a8639d12323878b cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes \ && autoconf \ && dh_auto_configure -- \ --enable-libcurl \ --enable-gcs \ --enable-s3 \ --enable-plugins \ --with-plugin-dir='/usr/lib/mips64el-linux-gnuabi64/htslib' \ --with-external-htscodecs \ --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib' ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/usr/lib/mips64el-linux-gnuabi64/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for mips64el-linux-gnuabi64-gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for mips64el-linux-gnuabi64-pkg-config... /usr/bin/mips64el-linux-gnuabi64-pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for mips64el-linux-gnuabi64... plain .so checking whether the linker supports versioned symbols... yes checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/mips64el-linux-gnuabi64 make -j1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.20"' > version.h printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 'mips64el-linux-gnuabi64-gcc' \ '-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2' \ '-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects' \ '-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic' \ '-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm ' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ > config_vars.h mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_mods.o sam_mods.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 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tbx.pico tbx.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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cram/cram_encode.pico cram/cram_encode.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration 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-ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/mips64el-linux-gnuabi64/htslib\" -fPIC -c -o plugin.pico plugin.c mips64el-linux-gnuabi64-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o annot-tsv.o annot-tsv.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c mips64el-linux-gnuabi64-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup_mod.o test/pileup_mod.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_faidx.o test/test_faidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3t64/ debian/libhts3t64/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.20" \ libdir=/usr/lib/mips64el-linux-gnuabi64 install -m0755 -d /<>/htslib-1.20\+ds/debian/tmp make -j1 install DESTDIR=/<>/htslib-1.20\+ds/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.20 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/share/man/man7 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig if test -n "/usr/lib/mips64el-linux-gnuabi64/htslib"; then mkdir -p -m 755 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 ln -sf libhts.so.1.20 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -sf libhts.so.1.20 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/mips64el-linux-gnuabi64#g;s#@-PACKAGE_VERSION@#1.20#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc install -p annot-tsv bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a install -p -m 644 annot-tsv.1 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /<>/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -m0755 -d debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/htslib debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts3t64/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man5/ install -m0755 -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/ install -m0755 -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig/ install -m0755 -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/copyright debian/libhts3t64/usr/share/doc/libhts3t64/copyright install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so: No such file or directory make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -m0755 -d debian/libhts3t64/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_lintian -a install -m0755 -d debian/libhts3t64/usr/share/lintian/overrides install -p -m0644 debian/libhts3t64.lintian-overrides debian/libhts3t64/usr/share/lintian/overrides/libhts3t64 dh_perl -a dh_link -a rm -f debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 ln -s libhts.so.1.20 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.3 rm -f debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -s libhts.so.1.20 debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so install -m0755 -d debian/tabix/usr/share/man/man1 rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3t64 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3t64/usr/share/man debian/libhts3t64/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_missing make[1]: Entering directory '/<>' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man dh_missing make[1]: Leaving directory '/<>' dh_dwz -a install -m0755 -d debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug -- debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 dwz: debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so: DWARF compression not beneficial - old size 40849 new size 40864 dwz: debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20: DWARF compression not beneficial - old size 942139 new size 961983 mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug chmod 0644 -- debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libhts3t64.debug install -m0755 -d debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 dwz -mdebian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -M/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug -- debian/tabix/usr/bin/bgzip debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --compress-debug-sections debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug chmod 0644 -- debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_strip make[1]: Entering directory '/<>' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/e5099b9eb2f234fbfeac3b474d78b1e9047ea9.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/e5099b9eb2f234fbfeac3b474d78b1e9047ea9.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/82/e5099b9eb2f234fbfeac3b474d78b1e9047ea9.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/51 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/51/aae36390f4e163cb6a5dda8e66b5468b3522e5.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/51/aae36390f4e163cb6a5dda8e66b5468b3522e5.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/51/aae36390f4e163cb6a5dda8e66b5468b3522e5.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/a5 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/a5/51444bdd3a56254d6c18749e85f505b497dbc4.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/a5/51444bdd3a56254d6c18749e85f505b497dbc4.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/a5/51444bdd3a56254d6c18749e85f505b497dbc4.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5c mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5c/d4b9763ebd2bc62120bd22fdd1344d57062cdf.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5c/d4b9763ebd2bc62120bd22fdd1344d57062cdf.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5c/d4b9763ebd2bc62120bd22fdd1344d57062cdf.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/679d946adc3cbf40adf13bd15b38de0320ba9d.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/679d946adc3cbf40adf13bd15b38de0320ba9d.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1e/679d946adc3cbf40adf13bd15b38de0320ba9d.debug debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhts3t64/usr/lib/debug install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/96 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/96/8ab16f65ed52328f81e1d50ddcf86255905e35.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/96/8ab16f65ed52328f81e1d50ddcf86255905e35.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/96/8ab16f65ed52328f81e1d50ddcf86255905e35.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/79265e6a3653540863b3718ed502603ac70da0.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/79265e6a3653540863b3718ed502603ac70da0.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/df/79265e6a3653540863b3718ed502603ac70da0.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dd mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dd/3dd0aee6e3585441329fb3050ebda6fcbfb049.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dd/3dd0aee6e3585441329fb3050ebda6fcbfb049.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/dd/3dd0aee6e3585441329fb3050ebda6fcbfb049.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tabix/usr/lib/debug/.dwz/mips64el-linux-gnuabi64 debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tabix/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tabix/usr/lib/debug install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym install -m0755 -d debian/.debhelper/tabix make[1]: Leaving directory '/<>' dh_makeshlibs -a rm -f debian/libhts3t64/DEBIAN/shlibs install -m0755 -d debian/libhts3t64/DEBIAN echo "libhts 3 libhts3t64 (>= 1.20+ds)" >> debian/libhts3t64/DEBIAN/shlibs chmod 0644 -- debian/libhts3t64/DEBIAN/shlibs dpkg-gensymbols -plibhts3t64 -Idebian/libhts3t64.symbols -Pdebian/libhts3t64 -edebian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 mv debian/.debhelper/generated/libhts3t64/triggers.new debian/.debhelper/generated/libhts3t64/triggers mv debian/libhts3t64.substvars.new debian/libhts3t64.substvars rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libhts3t64/DEBIAN dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld.so.1.usr-is-merged install -m0755 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld.so.1.usr-is-merged dh_installdeb -a install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol -a install -m0755 -d debian/libhts3t64/DEBIAN echo misc:Depends= >> debian/libhts3t64.substvars echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=1e679d946adc3cbf40adf13bd15b38de0320ba9d 51aae36390f4e163cb6a5dda8e66b5468b3522e5 5cd4b9763ebd2bc62120bd22fdd1344d57062cdf 82e5099b9eb2f234fbfeac3b474d78b1e9047ea9 a551444bdd3a56254d6c18749e85f505b497dbc4" -DSection=debug -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 chmod 0644 -- debian/libhts3t64/DEBIAN/control install -m0755 -d debian/libhts-dev/DEBIAN echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=968ab16f65ed52328f81e1d50ddcf86255905e35 dd3dd0aee6e3585441329fb3050ebda6fcbfb049 df79265e6a3653540863b3718ed502603ac70da0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libhts3t64/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3t64 .. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.20+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.20+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.20+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.20+ds-1_mips64el.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.20+ds-1_mips64el.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.20+ds-1_mips64el.buildinfo dpkg-genchanges --build=any -O../htslib_1.20+ds-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from htslib-1.20+ds/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-08-12T00:30:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.20+ds-1_mips64el.changes: ---------------------------------- Format: 1.8 Date: Wed, 29 May 2024 12:25:07 +0200 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.20+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libhts-dev - development files for the HTSlib libhts3t64 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.20+ds-1) unstable; urgency=medium . * New upstream version 1.20+ds * d/copyright: update copyright year. * d/control: declare compliance to standards version 4.7.0. * Patch fix_float_precision: refresh. * testShebang.patch: unfuzz. * d/libhts3t64.symbols: introduce new upstream functions. Checksums-Sha1: 1ee1991458b0415ce720138a0a3716e1c36f8acf 7413 htslib_1.20+ds-1_mips64el.buildinfo 6b1fc0d81fa883fbb76fda75799c323d350cf268 1725056 libhts-dev_1.20+ds-1_mips64el.deb dc46a121b87f58de3b006fbae90796606f0886af 1321088 libhts3t64-dbgsym_1.20+ds-1_mips64el.deb 39ce2f247a760dba171ff5fc5c2b862a849541bb 408700 libhts3t64_1.20+ds-1_mips64el.deb 0ba56310ce47f100bf30496716c79a6bc74d1ef0 2875596 tabix-dbgsym_1.20+ds-1_mips64el.deb 734f8b30a8066dae553228de7ebd67d8fba57761 444736 tabix_1.20+ds-1_mips64el.deb Checksums-Sha256: d531433000117fa41413f7ddc5f4aae4f07d4729796ec4af018478be336097da 7413 htslib_1.20+ds-1_mips64el.buildinfo 13690a330088aa28800fd9b0a9e27620d6690ccda39ad15c2a2167ecde7feb81 1725056 libhts-dev_1.20+ds-1_mips64el.deb 403f93618251a6aea394e70979867f8c846f4b142d06bcdc2ce6fc1a655e80df 1321088 libhts3t64-dbgsym_1.20+ds-1_mips64el.deb 34a58cc1f3a440508892549e8e1c96ab3f34bc4edbf1e694237eb3c5c77bd19d 408700 libhts3t64_1.20+ds-1_mips64el.deb 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coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-14 (= 14.2.0-2), cpp-14-x86-64-linux-gnu (= 14.2.0-2), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-2), g++-14-x86-64-linux-gnu (= 14.2.0-2), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-14 (= 14.2.0-2), gcc-14-base (= 14.2.0-2), gcc-14-x86-64-linux-gnu (= 14.2.0-2), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-2), libatomic1 (= 14.2.0-2), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43-2), libblkid1 (= 2.40.2-6), libbrotli-dev (= 1.1.0-2+b4), libbrotli1 (= 1.1.0-2+b4), libbz2-1.0 (= 1.0.8-5.1), libbz2-dev (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-2), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.43-2), libctf0 (= 2.43-2), libcurl3t64-gnutls (= 8.9.1-2), libcurl4-gnutls-dev (= 8.9.1-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdeflate-dev (= 1.20-1), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libevent-2.1-7t64 (= 2.1.12-stable-10), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-2), libgcc-s1 (= 14.2.0-2), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-2+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1), libgnutls-dane0t64 (= 3.8.6-2), libgnutls-openssl27t64 (= 3.8.6-2), libgnutls28-dev (= 3.8.6-2), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-2), libgprofng0 (= 2.43-2), libgssapi-krb5-2 (= 1.21.3-3), libhogweed6t64 (= 3.10-1), libhtscodecs-dev (= 1.6.0-1+b1), libhtscodecs2 (= 1.6.0-1+b1), libhwasan0 (= 14.2.0-2), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libidn2-dev (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-2), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), libldap-2.5-0 (= 2.5.18+dfsg-2), liblsan0 (= 14.2.0-2), liblzma-dev (= 5.6.2-2), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-6), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.62.1-2), libnghttp2-dev (= 1.62.1-2), libnghttp3-9 (= 1.4.0-1), libnghttp3-dev (= 1.4.0-1), libngtcp2-16 (= 1.6.0-1), libngtcp2-crypto-gnutls-dev (= 1.6.0-1), libngtcp2-crypto-gnutls8 (= 1.6.0-1), libngtcp2-dev (= 1.6.0-1), libp11-kit-dev (= 0.25.5-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-5), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-3), libpsl-dev (= 0.21.2-1.1), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14.2.0-2), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-7), libsasl2-modules-db (= 2.1.28+dfsg1-7), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b4), libsframe1 (= 2.43-2), libsmartcols1 (= 2.40.2-6), libssh2-1-dev (= 1.11.0-7), libssh2-1t64 (= 1.11.0-7), libssl-dev (= 3.3.1-2), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-2), libstdc++6 (= 14.2.0-2), libsystemd0 (= 256.4-3), libtasn1-6 (= 4.19.0-3+b2), libtasn1-6-dev (= 4.19.0-3+b2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-2), libubsan1 (= 14.2.0-2), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-3), libunbound8 (= 1.20.0-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-6), libxml2 (= 2.12.7+dfsg-3+b1), libzstd-dev (= 1.5.6+dfsg-1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.3-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-3), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), nettle-dev (= 3.10-1), patch (= 2.7.6-7), perl (= 5.38.2-5), perl-base (= 5.38.2-5), perl-modules-5.38 (= 5.38.2-5), pkgconf (= 1.8.1-3), pkgconf-bin (= 1.8.1-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-6), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1716978307" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.20+ds-1_mips64el.deb --------------------------------- new Debian package, version 2.0. size 1725056 bytes: control archive=1984 bytes. 1219 bytes, 27 lines control 2361 bytes, 36 lines md5sums Package: libhts-dev Source: htslib Version: 1.20+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 7403 Depends: libhts3t64 (= 1.20+ds-1), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/include/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/include/htslib/ -rw-r--r-- root/root 16469 2023-07-20 15:01 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 22175 2023-01-20 10:05 ./usr/include/htslib/cram.h -rw-r--r-- root/root 15122 2023-07-20 15:01 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 13578 2023-09-08 16:43 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 57362 2024-04-15 14:09 ./usr/include/htslib/hts.h -rw-r--r-- root/root 4445 2024-02-08 14:40 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11729 2023-08-24 15:40 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2022-07-14 09:33 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2022-05-13 15:25 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2022-01-11 12:11 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5605 2020-01-23 10:28 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2019-11-19 11:20 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 22903 2023-04-06 07:36 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2020-08-10 08:46 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5189 2023-10-03 15:40 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2022-07-27 10:31 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2020-08-27 10:09 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 9357 2023-10-03 15:40 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11507 2022-08-16 10:42 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 11462 2022-07-27 10:31 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2020-07-29 13:09 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 92100 2023-11-11 17:07 ./usr/include/htslib/sam.h -rw-r--r-- root/root 16584 2023-06-05 14:19 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 4992 2024-03-26 10:03 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12747 2020-09-16 09:17 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 68936 2023-08-31 15:42 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2020-07-11 11:34 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2020-09-16 09:17 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 7053930 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/libhts.a lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/libhts.so -> libhts.so.1.20 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/ -rw-r--r-- root/root 682 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/libhts-dev/ -rw-r--r-- root/root 2680 2021-04-12 09:37 ./usr/share/doc/libhts-dev/README -rw-r--r-- root/root 2961 2019-12-10 17:59 ./usr/share/doc/libhts-dev/README.large_positions.md.gz -rw-r--r-- root/root 401 2022-07-03 07:14 ./usr/share/doc/libhts-dev/README.test -rw-r--r-- root/root 3580 2024-05-29 10:25 ./usr/share/doc/libhts-dev/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/libhts-dev/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/libhts-dev/copyright libhts3t64-dbgsym_1.20+ds-1_mips64el.deb ---------------------------------------- new Debian package, version 2.0. size 1321088 bytes: control archive=828 bytes. 567 bytes, 13 lines control 624 bytes, 6 lines md5sums Package: libhts3t64-dbgsym Source: htslib Version: 1.20+ds-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1427 Depends: libhts3t64 (= 1.20+ds-1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3t64 Build-Ids: 1e679d946adc3cbf40adf13bd15b38de0320ba9d 51aae36390f4e163cb6a5dda8e66b5468b3522e5 5cd4b9763ebd2bc62120bd22fdd1344d57062cdf 82e5099b9eb2f234fbfeac3b474d78b1e9047ea9 a551444bdd3a56254d6c18749e85f505b497dbc4 drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/1e/ -rw-r--r-- root/root 56848 2024-05-29 10:25 ./usr/lib/debug/.build-id/1e/679d946adc3cbf40adf13bd15b38de0320ba9d.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/51/ -rw-r--r-- root/root 40248 2024-05-29 10:25 ./usr/lib/debug/.build-id/51/aae36390f4e163cb6a5dda8e66b5468b3522e5.debug drwxr-xr-x 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libhts3t64 libhts3t64_1.20+ds-1_mips64el.deb --------------------------------- new Debian package, version 2.0. size 408700 bytes: control archive=6108 bytes. 1299 bytes, 24 lines control 989 bytes, 13 lines md5sums 33 bytes, 1 lines shlibs 30193 bytes, 932 lines symbols 66 bytes, 2 lines triggers Package: libhts3t64 Source: htslib Version: 1.20+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1382 Depends: libbz2-1.0, libc6 (>= 2.34), libcurl3t64-gnutls (>= 7.18.0), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3t64 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: ivar (<< 1.3.1~), libhts-dev (<< 1.13~), libhts3 (<< 1.20+ds-1), libtabixpp (<< 1.0.0-5~), samtools (<< 1.17~) Replaces: libhts-dev (<< 1.13~), libhts3 Provides: libhts3 (= 1.20+ds-1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/htslib/ -rw-r--r-- root/root 68136 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_gcs.so -rw-r--r-- root/root 69200 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_libcurl.so -rw-r--r-- root/root 68808 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3.so -rw-r--r-- root/root 68760 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/htslib/hfile_s3_write.so -rw-r--r-- root/root 1029768 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.1.20 lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/lib/mips64el-linux-gnuabi64/libhts.so.3 -> libhts.so.1.20 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/libhts3t64/ -rw-r--r-- root/root 3581 2024-05-29 10:25 ./usr/share/doc/libhts3t64/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/libhts3t64/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/libhts3t64/copyright drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 54 2024-02-28 10:53 ./usr/share/lintian/overrides/libhts3t64 drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2024-05-29 10:25 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2024-05-29 10:25 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2024-05-29 10:25 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man7/ -rw-r--r-- root/root 3416 2024-05-29 10:25 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.20+ds-1_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 2875596 bytes: control archive=700 bytes. 453 bytes, 12 lines control 407 bytes, 4 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.20+ds-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 3085 Depends: tabix (= 1.20+ds-1) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 968ab16f65ed52328f81e1d50ddcf86255905e35 dd3dd0aee6e3585441329fb3050ebda6fcbfb049 df79265e6a3653540863b3718ed502603ac70da0 drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/96/ -rw-r--r-- root/root 1112656 2024-05-29 10:25 ./usr/lib/debug/.build-id/96/8ab16f65ed52328f81e1d50ddcf86255905e35.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/dd/ -rw-r--r-- root/root 869496 2024-05-29 10:25 ./usr/lib/debug/.build-id/dd/3dd0aee6e3585441329fb3050ebda6fcbfb049.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 1083064 2024-05-29 10:25 ./usr/lib/debug/.build-id/df/79265e6a3653540863b3718ed502603ac70da0.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 77544 2024-05-29 10:25 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/tabix.debug drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-05-29 10:25 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.20+ds-1_mips64el.deb ---------------------------- new Debian package, version 2.0. size 444736 bytes: control archive=1132 bytes. 988 bytes, 20 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.20+ds-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 2618 Depends: libbz2-1.0, libc6 (>= 2.34), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. drwxr-xr-x root/root 0 2024-05-29 10:25 ./ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/bin/ -rwxr-xr-x root/root 757840 2024-05-29 10:25 ./usr/bin/bgzip -rwxr-xr-x root/root 894096 2024-05-29 10:25 ./usr/bin/htsfile -rwxr-xr-x root/root 960696 2024-05-29 10:25 ./usr/bin/tabix drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/doc/tabix/ -rw-r--r-- root/root 3580 2024-05-29 10:25 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 36455 2024-04-15 14:09 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 5897 2024-05-29 10:10 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/ drwxr-xr-x root/root 0 2024-05-29 10:25 ./usr/share/man/man1/ -rw-r--r-- root/root 3060 2024-05-29 10:25 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1917 2024-05-29 10:25 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3420 2024-05-29 10:25 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1440 B] Get:5 copy:/<>/apt_archive ./ Packages [1525 B] Fetched 3580 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 12.9 MB of archives. After this operation, 51.0 MB of additional disk space will be used. 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libtimedate-perl all 2.3300-2 [39.3 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:69 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:70 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:75 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:76 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:77 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:78 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:79 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:80 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:81 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:82 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:84 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:85 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:86 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:87 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:88 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:92 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.15~pre1-1 [38.5 kB] Get:93 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-3 [54.4 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:100 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:101 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.11-1 [143 kB] Get:102 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:103 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:105 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:106 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.146-1 [56.2 kB] Get:107 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:108 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:109 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:110 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:112 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:114 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.44-1 [64.2 kB] Get:115 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:116 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:118 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:120 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:121 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:122 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:124 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:125 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:126 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-2 [63.6 kB] Get:127 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:128 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:129 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:130 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:131 http://localhost:3142/debian sid/main amd64 lintian all 2.118.0 [1055 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.9 MB in 0s (76.8 MB/s) Selecting previously unselected package netbase. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.1-2_amd64.deb ... Unpacking openssl (3.3.1-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1+b1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1+b1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.43-8_amd64.deb ... Unpacking gpgconf (2.2.43-8) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.46.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.0-1) ... 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Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.009-1_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.009-1) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... 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Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.38-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.46.0-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-3) ... Setting up libtime-moment-perl (0.44-2+b3) ... 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Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.44-1) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libhtml-parser-perl:amd64 (3.83-1) ... Setting up gpgconf (2.2.43-8) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up gpg (2.2.43-8) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.118.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for man-db (2.12.1-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 85244 Build-Time: 110 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 11 Job: htslib_1.20+ds-1 Lintian: pass Machine Architecture: amd64 Package: htslib Package-Time: 129 Source-Version: 1.20+ds-1 Space: 85244 Status: successful Version: 1.20+ds-1 -------------------------------------------------------------------------------- Finished at 2024-08-12T00:30:37Z Build needed 00:02:09, 85244k disk space