sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on debian-ci-siliconvalley +==============================================================================+ | htslib 1.24-3 (s390x) Sun, 27 Sep 2026 00:22:29 +0000 | +==============================================================================+ Package: htslib Version: 1.24-3 Source Version: 1.24-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: Unpacking /home/crossqa/.cache/sbuild/unstable-amd64-sbuild.tar.zst to /tmp/tmp.sbuild.YsHVElcBuM... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 27 Sep 2026 00:22:33 +0000 | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [193 kB] Get:2 http://localhost:3142/debian unstable/main Sources [12.0 MB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages [10.8 MB] Get:4 http://localhost:3142/debian unstable/main s390x Packages [10.2 MB] Fetched 33.2 MB in 3s (12.2 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2002 kB of archives. After this operation, 10.2 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 7.2.8-1 [2002 kB] Fetched 2002 kB in 0s (122 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12033 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_7.2.8-1_all.deb ... Unpacking linux-libc-dev (7.2.8-1) over (7.2.7-1) ... Setting up linux-libc-dev (7.2.8-1) ... +------------------------------------------------------------------------------+ | Fetch source files Sun, 27 Sep 2026 00:22:38 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1882 kB of source archives. Get:1 http://localhost:3142/debian unstable/main htslib 1.24-3 (dsc) [2428 B] Get:2 http://localhost:3142/debian unstable/main htslib 1.24-3 (tar) [1858 kB] Get:3 http://localhost:3142/debian unstable/main htslib 1.24-3 (diff) [21.8 kB] Fetched 1882 kB in 0s (34.5 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 27 Sep 2026 00:22:39 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 14), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 14), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev, libc-dev, libstdc++-dev, build-essential:amd64, crossbuild-essential-s390x:amd64, apt-utils:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ZblOc1/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Sources [841 B] Get:5 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Packages [884 B] Fetched 2334 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcurl4-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libdeflate-dev:s390x libdeflate0:s390x libelf1t64 libevent-2.1-7t64:s390x libffi8:s390x libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblsan0:s390x liblsan0-s390x-cross liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf7 libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring-dev:s390x libunistring5 libunistring5:s390x libxml2-16 libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sensible-utils zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:s390x gcc-16-locales cpp-16-doc cpp-doc dh-make gcc-16-doc manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x libnss-nis:s390x manpages-dev:s390x libcurl4-doc:s390x libidn-dev:s390x gmp-doc:s390x libgmp10-doc:s390x libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x krb5-user:s390x liblzma-doc:s390x libnghttp2-doc:s390x p11-kit-doc:s390x libssl-doc:s390x libstdc++-16-doc:s390x libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx python3:any python3-requests bzip2-doc:s390x ca-certificates:s390x libarchive-cpio-perl krb5-locales:s390x libldap-common:s390x publicsuffix:s390x libsasl2-modules:s390x libtasn1-doc:s390x libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils comerr-dev:s390x cpp-16-s390x-linux-gnu cpp-s390x-linux-gnu crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dwz file g++-16-s390x-linux-gnu g++-s390x-linux-gnu gcc-16-base:s390x gcc-16-cross-base gcc-16-s390x-linux-gnu gcc-16-s390x-linux-gnu-base gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:s390x libarchive-zip-perl libasan8:s390x libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross libbrotli-dev:s390x libbrotli1:s390x libbz2-1.0:s390x libbz2-dev:s390x libc-gconv-modules-extra:s390x libc6:s390x libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2:s390x libcurl4-gnutls:s390x libcurl4-gnutls-dev:s390x libdb5.3t64:s390x libdebhelper-perl libdeflate-dev:s390x libdeflate0:s390x libelf1t64 libevent-2.1-7t64:s390x libffi8:s390x libfile-stripnondeterminism-perl libgcc-16-dev:s390x libgcc-16-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0t64:s390x libgnutls28-dev:s390x libgnutls30t64:s390x libgomp1:s390x libgomp1-s390x-cross libgssapi-krb5-2:s390x libgssrpc4t64:s390x libhogweed6t64:s390x libhtscodecs-dev:s390x libhtscodecs2:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x libitm1-s390x-cross libk5crypto3:s390x libkadm5clnt-mit12:s390x libkadm5srv-mit12:s390x libkdb5-10t64:s390x libkeyutils1:s390x libkrb5-3:s390x libkrb5-dev:s390x libkrb5support0:s390x libldap-dev:s390x libldap2:s390x liblsan0:s390x liblsan0-s390x-cross liblzma-dev:s390x liblzma5:s390x libmagic-mgc libmagic1t64 libnettle8t64:s390x libnghttp2-14:s390x libnghttp2-dev:s390x libnghttp3-9:s390x libnghttp3-dev:s390x libngtcp2-16:s390x libngtcp2-crypto-gnutls-dev:s390x libngtcp2-crypto-gnutls8:s390x libngtcp2-dev:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpipeline1 libpkgconf7 libpsl-dev:s390x libpsl5t64:s390x librtmp-dev:s390x librtmp1:s390x libsasl2-2:s390x libsasl2-modules-db:s390x libssh2-1-dev:s390x libssh2-1t64:s390x libssl-dev:s390x libssl3t64:s390x libstdc++-16-dev:s390x libstdc++-16-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross libtasn1-6:s390x libtasn1-6-dev:s390x libtool libtsan2:s390x libtsan2-s390x-cross libubsan1:s390x libubsan1-s390x-cross libuchardet0 libunbound8:s390x libunistring-dev:s390x libunistring5 libunistring5:s390x libxml2-16 libzstd-dev:s390x libzstd1:s390x linux-libc-dev-s390x-cross m4 man-db nettle-dev:s390x pkgconf:s390x pkgconf-bin po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 449 MB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.42.4-1 [103 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.47-6 [1435 kB] Get:18 http://localhost:3142/debian unstable/main s390x gcc-16-base s390x 16.2.0-3 [38.7 kB] Get:19 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 16.2.0-3 [52.2 kB] Get:20 http://localhost:3142/debian unstable/main s390x libc-gconv-modules-extra s390x 2.43-6 [1072 kB] Get:21 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.43-6 [1475 kB] Get:22 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.43-6 [1621 kB] Get:23 http://localhost:3142/debian unstable/main s390x libcom-err2 s390x 1.47.4-1+b1 [19.3 kB] Get:24 http://localhost:3142/debian unstable/main s390x comerr-dev s390x 2.1-1.47.4-1+b1 [51.1 kB] Get:25 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu-base amd64 16.2.0-3cross1 [38.9 kB] Get:26 http://localhost:3142/debian unstable/main amd64 cpp-16-s390x-linux-gnu amd64 16.2.0-3cross1 [11.1 MB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:16.1.0-3 [4468 B] Get:28 http://localhost:3142/debian unstable/main amd64 gcc-16-cross-base all 16.2.0-3cross1 [34.4 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.43-3cross8 [1222 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 16.2.0-3cross1 [52.2 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 16.2.0-3cross1 [140 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 16.2.0-3cross1 [26.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 16.2.0-3cross1 [9056 B] Get:34 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 16.2.0-3cross1 [2657 kB] Get:35 http://localhost:3142/debian unstable/main amd64 liblsan0-s390x-cross all 16.2.0-3cross1 [1233 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libtsan2-s390x-cross all 16.2.0-3cross1 [2396 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 16.2.0-3cross1 [810 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 16.2.0-3cross1 [1097 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libgcc-16-dev-s390x-cross all 16.2.0-3cross1 [1181 kB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-16-s390x-linux-gnu amd64 16.2.0-3cross1 [21.1 MB] Get:41 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:16.1.0-3 [1440 B] Get:42 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 7.2.8-1 [12.3 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.43-3cross8 [1614 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libstdc++-16-dev-s390x-cross all 16.2.0-3cross1 [2711 kB] Get:45 http://localhost:3142/debian unstable/main amd64 g++-16-s390x-linux-gnu amd64 16.2.0-3cross1 [12.3 MB] Get:46 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:16.1.0-3 [1200 B] Get:47 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B] Get:48 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:50 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:54 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:58 http://localhost:3142/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:59 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:60 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:61 http://localhost:3142/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:62 http://localhost:3142/debian unstable/main s390x libkrb5support0 s390x 1.22.1-3 [30.8 kB] Get:63 http://localhost:3142/debian unstable/main s390x libk5crypto3 s390x 1.22.1-3 [80.9 kB] Get:64 http://localhost:3142/debian unstable/main s390x libkeyutils1 s390x 1.6.3-6+b2 [9280 B] Get:65 http://localhost:3142/debian unstable/main s390x libzstd1 s390x 1.5.7+dfsg-4 [322 kB] Get:66 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.2-3 [88.0 kB] Get:67 http://localhost:3142/debian unstable/main s390x libssl3t64 s390x 3.6.4-1 [2068 kB] Get:68 http://localhost:3142/debian unstable/main s390x libkrb5-3 s390x 1.22.1-3 [330 kB] Get:69 http://localhost:3142/debian unstable/main s390x libgssapi-krb5-2 s390x 1.22.1-3 [130 kB] Get:70 http://localhost:3142/debian unstable/main s390x libgssrpc4t64 s390x 1.22.1-3 [56.3 kB] Get:71 http://localhost:3142/debian unstable/main s390x libkadm5clnt-mit12 s390x 1.22.1-3 [39.0 kB] Get:72 http://localhost:3142/debian unstable/main s390x libkdb5-10t64 s390x 1.22.1-3 [40.7 kB] Get:73 http://localhost:3142/debian unstable/main s390x libkadm5srv-mit12 s390x 1.22.1-3 [52.5 kB] Get:74 http://localhost:3142/debian unstable/main s390x krb5-multidev s390x 1.22.1-3 [125 kB] Get:75 http://localhost:3142/debian unstable/main s390x libasan8 s390x 16.2.0-3 [2664 kB] Get:76 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 16.2.0-3 [8968 B] Get:77 http://localhost:3142/debian unstable/main s390x libbrotli1 s390x 1.2.0-4+b1 [323 kB] Get:78 http://localhost:3142/debian unstable/main s390x libbrotli-dev s390x 1.2.0-4+b1 [339 kB] Get:79 http://localhost:3142/debian unstable/main s390x libbz2-1.0 s390x 1.0.8-6+b2 [41.9 kB] Get:80 http://localhost:3142/debian unstable/main s390x libbz2-dev s390x 1.0.8-6+b2 [35.7 kB] Get:81 http://localhost:3142/debian unstable/main s390x libnghttp3-9 s390x 1.17.0-1 [65.1 kB] Get:82 http://localhost:3142/debian unstable/main s390x libngtcp2-16 s390x 1.24.0-1 [135 kB] Get:83 http://localhost:3142/debian unstable/main s390x libgmp10 s390x 2:6.3.0+dfsg-5+b2 [604 kB] Get:84 http://localhost:3142/debian unstable/main s390x libnettle8t64 s390x 3.10.2-1+b1 [318 kB] Get:85 http://localhost:3142/debian unstable/main s390x libhogweed6t64 s390x 3.10.2-1+b1 [336 kB] Get:86 http://localhost:3142/debian unstable/main s390x libunistring5 s390x 1.4.2-1 [475 kB] Get:87 http://localhost:3142/debian unstable/main s390x libidn2-0 s390x 2.3.8-5 [107 kB] Get:88 http://localhost:3142/debian unstable/main s390x libffi8 s390x 3.8.0-2 [26.0 kB] Get:89 http://localhost:3142/debian unstable/main s390x libp11-kit0 s390x 0.26.5-1 [459 kB] Get:90 http://localhost:3142/debian unstable/main s390x libtasn1-6 s390x 4.21.0-2+b1 [47.8 kB] Get:91 http://localhost:3142/debian unstable/main s390x libgnutls30t64 s390x 3.8.13-1 [1451 kB] Get:92 http://localhost:3142/debian unstable/main s390x libdb5.3t64 s390x 5.3.28+dfsg2-11+b1 [670 kB] Get:93 http://localhost:3142/debian unstable/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-11 [16.7 kB] Get:94 http://localhost:3142/debian unstable/main s390x libsasl2-2 s390x 2.1.28+dfsg1-11 [54.1 kB] Get:95 http://localhost:3142/debian unstable/main s390x libldap2 s390x 2.6.14+dfsg-2 [181 kB] Get:96 http://localhost:3142/debian unstable/main s390x libnghttp2-14 s390x 1.70.0-1 [90.6 kB] Get:97 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls8 s390x 1.24.0-1 [22.2 kB] Get:98 http://localhost:3142/debian unstable/main s390x libpsl5t64 s390x 0.23.3-1 [61.3 kB] Get:99 http://localhost:3142/debian unstable/main s390x libssh2-1t64 s390x 1.11.1-6 [237 kB] Get:100 http://localhost:3142/debian unstable/main s390x libcurl4-gnutls s390x 8.23.0~rc1-2 [405 kB] Get:101 http://localhost:3142/debian unstable/main s390x libevent-2.1-7t64 s390x 2.1.13-stable-1 [176 kB] Get:102 http://localhost:3142/debian unstable/main s390x libunbound8 s390x 1.26.1-1 [606 kB] Get:103 http://localhost:3142/debian unstable/main s390x libgnutls-dane0t64 s390x 3.8.13-1 [496 kB] Get:104 http://localhost:3142/debian unstable/main s390x libidn2-dev s390x 2.3.8-5 [101 kB] Get:105 http://localhost:3142/debian unstable/main s390x libp11-kit-dev s390x 0.26.5-1 [226 kB] Get:106 http://localhost:3142/debian unstable/main s390x libtasn1-6-dev s390x 4.21.0-2+b1 [97.7 kB] Get:107 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 16.2.0-3 [833 kB] Get:108 http://localhost:3142/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.3.0+dfsg-5+b2 [328 kB] Get:109 http://localhost:3142/debian unstable/main s390x libgmp-dev s390x 2:6.3.0+dfsg-5+b2 [685 kB] Get:110 http://localhost:3142/debian unstable/main s390x nettle-dev s390x 3.10.2-1+b1 [1332 kB] Get:111 http://localhost:3142/debian unstable/main s390x libgnutls28-dev s390x 3.8.13-1 [1383 kB] Get:112 http://localhost:3142/debian unstable/main s390x libkrb5-dev s390x 1.22.1-3 [14.0 kB] Get:113 http://localhost:3142/debian unstable/main s390x libldap-dev s390x 2.6.14+dfsg-2 [299 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:115 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:116 http://localhost:3142/debian unstable/main s390x pkgconf s390x 2.5.1-4 [33.6 kB] Get:117 http://localhost:3142/debian unstable/main s390x libnghttp2-dev s390x 1.70.0-1 [130 kB] Get:118 http://localhost:3142/debian unstable/main s390x libnghttp3-dev s390x 1.17.0-1 [92.9 kB] Get:119 http://localhost:3142/debian unstable/main s390x libngtcp2-crypto-gnutls-dev s390x 1.24.0-1 [22.2 kB] Get:120 http://localhost:3142/debian unstable/main s390x libngtcp2-dev s390x 1.24.0-1 [195 kB] Get:121 http://localhost:3142/debian unstable/main s390x libunistring-dev s390x 1.4.2-1 [633 kB] Get:122 http://localhost:3142/debian unstable/main s390x libpsl-dev s390x 0.23.3-1 [30.1 kB] Get:123 http://localhost:3142/debian unstable/main s390x librtmp1 s390x 2.6-1 [56.4 kB] Get:124 http://localhost:3142/debian unstable/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.2-3 [916 kB] Get:125 http://localhost:3142/debian unstable/main s390x librtmp-dev s390x 2.6-1 [66.9 kB] Get:126 http://localhost:3142/debian unstable/main s390x libssl-dev s390x 3.6.4-1 [2623 kB] Get:127 http://localhost:3142/debian unstable/main s390x libssh2-1-dev s390x 1.11.1-6 [387 kB] Get:128 http://localhost:3142/debian unstable/main s390x libzstd-dev s390x 1.5.7+dfsg-4 [388 kB] Get:129 http://localhost:3142/debian unstable/main s390x libcurl4-gnutls-dev s390x 8.23.0~rc1-2 [544 kB] Get:130 http://localhost:3142/debian unstable/main s390x libdeflate0 s390x 1.25-1 [40.7 kB] Get:131 http://localhost:3142/debian unstable/main s390x libdeflate-dev s390x 1.25-1 [48.4 kB] Get:132 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 16.2.0-3 [140 kB] Get:133 http://localhost:3142/debian unstable/main s390x libitm1 s390x 16.2.0-3 [26.9 kB] Get:134 http://localhost:3142/debian unstable/main s390x liblsan0 s390x 16.2.0-3 [1233 kB] Get:135 http://localhost:3142/debian unstable/main s390x libtsan2 s390x 16.2.0-3 [2409 kB] Get:136 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 16.2.0-3 [1098 kB] Get:137 http://localhost:3142/debian unstable/main s390x libgcc-16-dev s390x 16.2.0-3 [1189 kB] Get:138 http://localhost:3142/debian unstable/main s390x libhtscodecs2 s390x 1.6.7-1 [83.2 kB] Get:139 http://localhost:3142/debian unstable/main s390x libhtscodecs-dev s390x 1.6.7-1 [2986 kB] Get:140 http://localhost:3142/debian unstable/main s390x liblzma5 s390x 5.8.4-1 [350 kB] Get:141 http://localhost:3142/debian unstable/main s390x liblzma-dev s390x 5.8.4-1 [386 kB] Get:142 http://localhost:3142/debian unstable/main s390x libstdc++-16-dev s390x 16.2.0-3 [2737 kB] Preconfiguring packages ... Fetched 116 MB in 1s (117 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12033 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.47-4_amd64.deb ... Unpacking libmagic-mgc (1:5.47-4) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../002-libmagic1t64_1%3a5.47-4_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.47-4) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.47-4_amd64.deb ... Unpacking file (1:5.47-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_1.0-5_amd64.deb ... Unpacking gettext-base (1.0-5) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../005-libuchardet0_0.0.8-2+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.24.1-1_amd64.deb ... Unpacking groff-base (1.24.1-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.42.4-1_amd64.deb ... Unpacking bsdextrautils (2.42.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../008-libpipeline1_1.5.8-3_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-3) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.21-1_amd64.deb ... Unpacking m4 (1.4.21-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.73-2_all.deb ... Unpacking autoconf (2.73-2) ... Selecting previously unselected package autotools-dev. 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Selecting previously unselected package gettext. Preparing to unpack .../056-gettext_1.0-5_amd64.deb ... Unpacking gettext (1.0-5) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../057-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../058-po-debconf_1.0.22_all.deb ... Unpacking po-debconf (1.0.22) ... Selecting previously unselected package debhelper. Preparing to unpack .../059-debhelper_14.5_all.deb ... Unpacking debhelper (14.5) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../060-libkrb5support0_1.22.1-3_s390x.deb ... Unpacking libkrb5support0:s390x (1.22.1-3) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../061-libk5crypto3_1.22.1-3_s390x.deb ... Unpacking libk5crypto3:s390x (1.22.1-3) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../062-libkeyutils1_1.6.3-6+b2_s390x.deb ... Unpacking libkeyutils1:s390x (1.6.3-6+b2) ... Selecting previously unselected package libzstd1:s390x. Preparing to unpack .../063-libzstd1_1.5.7+dfsg-4_s390x.deb ... Unpacking libzstd1:s390x (1.5.7+dfsg-4) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../064-zlib1g_1%3a1.3.dfsg+really1.3.2-3_s390x.deb ... Unpacking zlib1g:s390x (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package libssl3t64:s390x. Preparing to unpack .../065-libssl3t64_3.6.4-1_s390x.deb ... Unpacking libssl3t64:s390x (3.6.4-1) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../066-libkrb5-3_1.22.1-3_s390x.deb ... Unpacking libkrb5-3:s390x (1.22.1-3) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../067-libgssapi-krb5-2_1.22.1-3_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.22.1-3) ... Selecting previously unselected package libgssrpc4t64:s390x. Preparing to unpack .../068-libgssrpc4t64_1.22.1-3_s390x.deb ... Unpacking libgssrpc4t64:s390x (1.22.1-3) ... Selecting previously unselected package libkadm5clnt-mit12:s390x. Preparing to unpack .../069-libkadm5clnt-mit12_1.22.1-3_s390x.deb ... Unpacking libkadm5clnt-mit12:s390x (1.22.1-3) ... Selecting previously unselected package libkdb5-10t64:s390x. Preparing to unpack .../070-libkdb5-10t64_1.22.1-3_s390x.deb ... Unpacking libkdb5-10t64:s390x (1.22.1-3) ... Selecting previously unselected package libkadm5srv-mit12:s390x. Preparing to unpack .../071-libkadm5srv-mit12_1.22.1-3_s390x.deb ... Unpacking libkadm5srv-mit12:s390x (1.22.1-3) ... Selecting previously unselected package krb5-multidev:s390x. Preparing to unpack .../072-krb5-multidev_1.22.1-3_s390x.deb ... Unpacking krb5-multidev:s390x (1.22.1-3) ... Selecting previously unselected package libasan8:s390x. 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Selecting previously unselected package libidn2-0:s390x. Preparing to unpack .../085-libidn2-0_2.3.8-5_s390x.deb ... Unpacking libidn2-0:s390x (2.3.8-5) ... Selecting previously unselected package libffi8:s390x. Preparing to unpack .../086-libffi8_3.8.0-2_s390x.deb ... Unpacking libffi8:s390x (3.8.0-2) ... Selecting previously unselected package libp11-kit0:s390x. Preparing to unpack .../087-libp11-kit0_0.26.5-1_s390x.deb ... Unpacking libp11-kit0:s390x (0.26.5-1) ... Selecting previously unselected package libtasn1-6:s390x. Preparing to unpack .../088-libtasn1-6_4.21.0-2+b1_s390x.deb ... Unpacking libtasn1-6:s390x (4.21.0-2+b1) ... Selecting previously unselected package libgnutls30t64:s390x. Preparing to unpack .../089-libgnutls30t64_3.8.13-1_s390x.deb ... Unpacking libgnutls30t64:s390x (3.8.13-1) ... Selecting previously unselected package libdb5.3t64:s390x. Preparing to unpack .../090-libdb5.3t64_5.3.28+dfsg2-11+b1_s390x.deb ... Unpacking libdb5.3t64:s390x (5.3.28+dfsg2-11+b1) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../091-libsasl2-modules-db_2.1.28+dfsg1-11_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-11) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../092-libsasl2-2_2.1.28+dfsg1-11_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.28+dfsg1-11) ... Selecting previously unselected package libldap2:s390x. Preparing to unpack .../093-libldap2_2.6.14+dfsg-2_s390x.deb ... Unpacking libldap2:s390x (2.6.14+dfsg-2) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../094-libnghttp2-14_1.70.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.70.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:s390x. Preparing to unpack .../095-libngtcp2-crypto-gnutls8_1.24.0-1_s390x.deb ... Unpacking libngtcp2-crypto-gnutls8:s390x (1.24.0-1) ... Selecting previously unselected package libpsl5t64:s390x. 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Unpacking libgnutls-dane0t64:s390x (3.8.13-1) ... Selecting previously unselected package libidn2-dev:s390x. Preparing to unpack .../102-libidn2-dev_2.3.8-5_s390x.deb ... Unpacking libidn2-dev:s390x (2.3.8-5) ... Selecting previously unselected package libp11-kit-dev:s390x. Preparing to unpack .../103-libp11-kit-dev_0.26.5-1_s390x.deb ... Unpacking libp11-kit-dev:s390x (0.26.5-1) ... Selecting previously unselected package libtasn1-6-dev:s390x. Preparing to unpack .../104-libtasn1-6-dev_4.21.0-2+b1_s390x.deb ... Unpacking libtasn1-6-dev:s390x (4.21.0-2+b1) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../105-libstdc++6_16.2.0-3_s390x.deb ... Unpacking libstdc++6:s390x (16.2.0-3) ... Selecting previously unselected package libgmpxx4ldbl:s390x. Preparing to unpack .../106-libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_s390x.deb ... Unpacking libgmpxx4ldbl:s390x (2:6.3.0+dfsg-5+b2) ... Selecting previously unselected package libgmp-dev:s390x. 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Unpacking libngtcp2-dev:s390x (1.24.0-1) ... Selecting previously unselected package libunistring-dev:s390x. Preparing to unpack .../119-libunistring-dev_1.4.2-1_s390x.deb ... Unpacking libunistring-dev:s390x (1.4.2-1) ... Selecting previously unselected package libpsl-dev:s390x. Preparing to unpack .../120-libpsl-dev_0.23.3-1_s390x.deb ... Unpacking libpsl-dev:s390x (0.23.3-1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../121-librtmp1_2.6-1_s390x.deb ... Unpacking librtmp1:s390x (2.6-1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.2-3) ... Selecting previously unselected package librtmp-dev:s390x. Preparing to unpack .../123-librtmp-dev_2.6-1_s390x.deb ... Unpacking librtmp-dev:s390x (2.6-1) ... Selecting previously unselected package libssl-dev:s390x. Preparing to unpack .../124-libssl-dev_3.6.4-1_s390x.deb ... Unpacking libssl-dev:s390x (3.6.4-1) ... Selecting previously unselected package libssh2-1-dev:s390x. Preparing to unpack .../125-libssh2-1-dev_1.11.1-6_s390x.deb ... Unpacking libssh2-1-dev:s390x (1.11.1-6) ... Selecting previously unselected package libzstd-dev:s390x. Preparing to unpack .../126-libzstd-dev_1.5.7+dfsg-4_s390x.deb ... Unpacking libzstd-dev:s390x (1.5.7+dfsg-4) ... Selecting previously unselected package libcurl4-gnutls-dev:s390x. Preparing to unpack .../127-libcurl4-gnutls-dev_8.23.0~rc1-2_s390x.deb ... Unpacking libcurl4-gnutls-dev:s390x (8.23.0~rc1-2) ... Selecting previously unselected package libdeflate0:s390x. Preparing to unpack .../128-libdeflate0_1.25-1_s390x.deb ... Unpacking libdeflate0:s390x (1.25-1) ... Selecting previously unselected package libdeflate-dev:s390x. Preparing to unpack .../129-libdeflate-dev_1.25-1_s390x.deb ... Unpacking libdeflate-dev:s390x (1.25-1) ... 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Preparing to unpack .../141-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Setting up libc-gconv-modules-extra:s390x (2.43-6) ... Setting up libpipeline1:amd64 (1.5.8-3) ... Setting up binutils-s390x-linux-gnu (2.47-6) ... Setting up bsdextrautils (2.42.4-1) ... Setting up libmagic-mgc (1:5.47-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libdebhelper-perl (14.5) ... Setting up libc6-s390x-cross (2.43-3cross8) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up gcc-16-s390x-linux-gnu-base:amd64 (16.2.0-3cross1) ... Setting up libmagic1t64:amd64 (1:5.47-4) ... Setting up gettext-base (1.0-5) ... Setting up m4 (1.4.21-1) ... Setting up gcc-16-base:s390x (16.2.0-3) ... Setting up file (1:5.47-4) ... Setting up gcc-16-cross-base (16.2.0-3cross1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up autotools-dev (20240727.1+nmu1) ... Setting up linux-libc-dev-s390x-cross (7.2.8-1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up autopoint (1.0-5) ... Setting up libgcc-s1-s390x-cross (16.2.0-3cross1) ... Setting up pkgconf-bin (2.5.1-4) ... Setting up autoconf (2.73-2) ... Setting up libitm1-s390x-cross (16.2.0-3cross1) ... Setting up dwz (0.17-1) ... Setting up sensible-utils (0.0.26) ... Setting up libc6-dev-s390x-cross (2.43-3cross8) ... Setting up liblsan0-s390x-cross (16.2.0-3cross1) ... Setting up libuchardet0:amd64 (0.0.8-2+b2) ... Setting up libgomp1-s390x-cross (16.2.0-3cross1) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up gettext (1.0-5) ... Setting up libtool (2.6.2-3) ... Setting up libstdc++6-s390x-cross (16.2.0-3cross1) ... Setting up cpp-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up libatomic1-s390x-cross (16.2.0-3cross1) ... Setting up libasan8-s390x-cross (16.2.0-3cross1) ... Setting up pkgconf:s390x (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libtsan2-s390x-cross (16.2.0-3cross1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up groff-base (1.24.1-1) ... Setting up libubsan1-s390x-cross (16.2.0-3cross1) ... Setting up cpp-s390x-linux-gnu (4:16.1.0-3) ... Setting up po-debconf (1.0.22) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up debhelper (14.5) ... Setting up gcc-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up gcc-s390x-linux-gnu (4:16.1.0-3) ... Setting up libstdc++-16-dev-s390x-cross (16.2.0-3cross1) ... Setting up g++-16-s390x-linux-gnu (16.2.0-3cross1) ... Setting up g++-s390x-linux-gnu (4:16.1.0-3) ... Setting up crossbuild-essential-s390x (12.12) ... Setting up libgcc-s1:s390x (16.2.0-3) ... Setting up libc6:s390x (2.43-6) ... Setting up libnghttp3-9:s390x (1.17.0-1) ... Setting up libnghttp3-dev:s390x (1.17.0-1) ... Setting up libdb5.3t64:s390x (5.3.28+dfsg2-11+b1) ... Setting up libffi8:s390x (3.8.0-2) ... Setting up libasan8:s390x (16.2.0-3) ... Setting up libtasn1-6:s390x (4.21.0-2+b1) ... Setting up libc6-dev:s390x (2.43-6) ... Setting up libngtcp2-16:s390x (1.24.0-1) ... Setting up libtsan2:s390x (16.2.0-3) ... Setting up libbz2-1.0:s390x (1.0.8-6+b2) ... Setting up libtasn1-6-dev:s390x (4.21.0-2+b1) ... Setting up libstdc++6:s390x (16.2.0-3) ... Setting up liblsan0:s390x (16.2.0-3) ... Setting up libitm1:s390x (16.2.0-3) ... Setting up libbz2-dev:s390x (1.0.8-6+b2) ... Setting up libhtscodecs2:s390x (1.6.7-1) ... Setting up libzstd1:s390x (1.5.7+dfsg-4) ... Setting up libkeyutils1:s390x (1.6.3-6+b2) ... Setting up libzstd-dev:s390x (1.5.7+dfsg-4) ... Setting up liblzma5:s390x (5.8.4-1) ... Setting up libbrotli1:s390x (1.2.0-4+b1) ... Setting up libnghttp2-14:s390x (1.70.0-1) ... Setting up libdeflate0:s390x (1.25-1) ... Setting up libevent-2.1-7t64:s390x (2.1.13-stable-1) ... Setting up zlib1g:s390x (1:1.3.dfsg+really1.3.2-3) ... Setting up libcom-err2:s390x (1.47.4-1+b1) ... Setting up libngtcp2-dev:s390x (1.24.0-1) ... Setting up libgomp1:s390x (16.2.0-3) ... Setting up libkrb5support0:s390x (1.22.1-3) ... Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-11) ... Setting up libhtscodecs-dev:s390x (1.6.7-1) ... Setting up libnettle8t64:s390x (3.10.2-1+b1) ... Setting up libgmp10:s390x (2:6.3.0+dfsg-5+b2) ... Setting up libp11-kit0:s390x (0.26.5-1) ... Setting up comerr-dev:s390x (2.1-1.47.4-1+b1) ... Setting up libunistring5:s390x (1.4.2-1) ... Setting up libatomic1:s390x (16.2.0-3) ... Setting up libk5crypto3:s390x (1.22.1-3) ... Setting up liblzma-dev:s390x (5.8.4-1) ... Setting up libubsan1:s390x (16.2.0-3) ... Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.2-3) ... Setting up libhogweed6t64:s390x (3.10.2-1+b1) ... Setting up libdeflate-dev:s390x (1.25-1) ... Setting up libbrotli-dev:s390x (1.2.0-4+b1) ... Setting up libp11-kit-dev:s390x (0.26.5-1) ... Setting up libunistring-dev:s390x (1.4.2-1) ... Setting up libnghttp2-dev:s390x (1.70.0-1) ... Setting up libgcc-16-dev:s390x (16.2.0-3) ... Setting up libssl3t64:s390x (3.6.4-1) ... Setting up libidn2-0:s390x (2.3.8-5) ... Setting up libunbound8:s390x (1.26.1-1) ... Setting up libgmpxx4ldbl:s390x (2:6.3.0+dfsg-5+b2) ... Setting up libstdc++-16-dev:s390x (16.2.0-3) ... Setting up libssl-dev:s390x (3.6.4-1) ... Setting up libidn2-dev:s390x (2.3.8-5) ... Setting up libsasl2-2:s390x (2.1.28+dfsg1-11) ... Setting up libkrb5-3:s390x (1.22.1-3) ... Setting up libssh2-1t64:s390x (1.11.1-6) ... Setting up libldap2:s390x (2.6.14+dfsg-2) ... Setting up libgnutls30t64:s390x (3.8.13-1) ... Setting up libgmp-dev:s390x (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:s390x (3.10.2-1+b1) ... Setting up libpsl5t64:s390x (0.23.3-1) ... Setting up libpsl-dev:s390x (0.23.3-1) ... Setting up libgnutls-dane0t64:s390x (3.8.13-1) ... Setting up librtmp1:s390x (2.6-1) ... Setting up libldap-dev:s390x (2.6.14+dfsg-2) ... Setting up libgssapi-krb5-2:s390x (1.22.1-3) ... Setting up libssh2-1-dev:s390x (1.11.1-6) ... Setting up libngtcp2-crypto-gnutls8:s390x (1.24.0-1) ... Setting up libgnutls28-dev:s390x (3.8.13-1) ... Setting up libcurl4-gnutls:s390x (8.23.0~rc1-2) ... Setting up libngtcp2-crypto-gnutls-dev:s390x (1.24.0-1) ... Setting up libgssrpc4t64:s390x (1.22.1-3) ... Setting up librtmp-dev:s390x (2.6-1) ... Setting up libkadm5clnt-mit12:s390x (1.22.1-3) ... Setting up libkdb5-10t64:s390x (1.22.1-3) ... Setting up libkadm5srv-mit12:s390x (1.22.1-3) ... Setting up krb5-multidev:s390x (1.22.1-3) ... Setting up libkrb5-dev:s390x (1.22.1-3) ... Setting up libcurl4-gnutls-dev:s390x (8.23.0~rc1-2) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 27 Sep 2026 00:22:53 +0000 | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment Sun, 27 Sep 2026 00:22:53 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-16_16.2.0-3 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-s390x-cross_16.2.0-3cross1 linux-libc-dev_7.2.8-1 Package versions: apt_3.3.3 apt-utils_3.3.3 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-6 binutils-common_2.47-6 binutils-s390x-linux-gnu_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.4-1 build-essential_12.12 bzip2_1.0.8-6+b2 comerr-dev_2.1-1.47.4-1+b1 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-3 cpp-16-s390x-linux-gnu_16.2.0-3cross1 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-s390x-linux-gnu_4:16.1.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.2.0-3 g++-16-s390x-linux-gnu_16.2.0-3cross1 g++-16-x86-64-linux-gnu_16.2.0-3 g++-s390x-linux-gnu_4:16.1.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-cross-base_16.2.0-3cross1 gcc-16-s390x-linux-gnu_16.2.0-3cross1 gcc-16-s390x-linux-gnu-base_16.2.0-3cross1 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-s390x-linux-gnu_4:16.1.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.22.1-3 libacl1_2.4.0-1 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libasan8-s390x-cross_16.2.0-3cross1 libatomic1_16.2.0-3 libatomic1-s390x-cross_16.2.0-3cross1 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libbinutils_2.47-6 libblkid1_2.42.4-1 libbrotli-dev_1.2.0-4+b1 libbrotli1_1.2.0-4+b1 libbz2-1.0_1.0.8-6+b2 libbz2-dev_1.0.8-6+b2 libc-bin_2.43-6 libc-dev-bin_2.43-6 libc-gconv-modules-extra_2.43-6 libc6_2.43-6 libc6-dev_2.43-6 libc6-dev-s390x-cross_2.43-3cross8 libc6-s390x-cross_2.43-3cross8 libcap-ng0_0.9.6-1 libcc1-0_16.2.0-3 libcom-err2_1.47.4-1+b1 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libcurl4-gnutls_8.23.0~rc1-2 libcurl4-gnutls-dev_8.23.0~rc1-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libevent-2.1-7t64_2.1.13-stable-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-3 libgcc-16-dev-s390x-cross_16.2.0-3cross1 libgcc-s1_16.2.0-3 libgcc-s1-s390x-cross_16.2.0-3cross1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls-dane0t64_3.8.13-1 libgnutls28-dev_3.8.13-1 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-3 libgomp1-s390x-cross_16.2.0-3cross1 libgprofng0_2.47-6 libgssapi-krb5-2_1.22.1-3 libgssrpc4t64_1.22.1-3 libhogweed6t64_3.10.2-1+b1 libhtscodecs-dev_1.6.7-1 libhtscodecs2_1.6.7-1 libhwasan0_16.2.0-3 libidn2-0_2.3.8-5 libidn2-dev_2.3.8-5 libisl23_0.28-1 libitm1_16.2.0-3 libitm1-s390x-cross_16.2.0-3cross1 libjansson4_2.15.1-1 libk5crypto3_1.22.1-3 libkadm5clnt-mit12_1.22.1-3 libkadm5srv-mit12_1.22.1-3 libkdb5-10t64_1.22.1-3 libkeyutils1_1.6.3-6+b2 libkrb5-3_1.22.1-3 libkrb5-dev_1.22.1-3 libkrb5support0_1.22.1-3 libldap-dev_2.6.14+dfsg-2 libldap2_2.6.14+dfsg-2 liblsan0_16.2.0-3 liblsan0-s390x-cross_16.2.0-3cross1 liblz4-1_1.10.0-10 liblzma-dev_5.8.4-1 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.70.0-1 libnghttp2-dev_1.70.0-1 libnghttp3-9_1.17.0-1 libnghttp3-dev_1.17.0-1 libngtcp2-16_1.24.0-1 libngtcp2-crypto-gnutls-dev_1.24.0-1 libngtcp2-crypto-gnutls8_1.24.0-1 libngtcp2-dev_1.24.0-1 libp11-kit-dev_0.26.5-1 libp11-kit0_0.26.5-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libpsl-dev_0.23.3-1 libpsl5t64_0.23.3-1 libquadmath0_16.2.0-3 librtmp-dev_2.6-1 librtmp1_2.6-1 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libseccomp2_2.6.1-1+b1 libselinux1_3.11-2.1 libsframe3_2.47-6 libsmartcols1_2.42.4-1 libssh2-1-dev_1.11.1-6 libssh2-1t64_1.11.1-6 libssl-dev_3.6.4-1 libssl3t64_3.6.4-1 libstdc++-16-dev_16.2.0-3 libstdc++-16-dev-s390x-cross_16.2.0-3cross1 libstdc++6_16.2.0-3 libstdc++6-s390x-cross_16.2.0-3cross1 libsystemd0_262-1 libtasn1-6_4.21.0-2+b1 libtasn1-6-dev_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-3 libtsan2-s390x-cross_16.2.0-3cross1 libubsan1_16.2.0-3 libubsan1-s390x-cross_16.2.0-3cross1 libuchardet0_0.0.8-2+b2 libudev1_262-1 libunbound8_1.26.1-1 libunistring-dev_1.4.2-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd-dev_1.5.7+dfsg-4 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.8-1 linux-libc-dev-s390x-cross_7.2.8-1 login_1:4.16.0-2+really2.42.4-1 login.defs_1:4.19.3-2 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-2 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.4-1 patch_2.8-2 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Sun, 27 Sep 2026 00:22:53 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: htslib Binary: libhts3t64, libhts-dev, htslib-test, tabix Architecture: any all Version: 1.24-3 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://github.com/samtools/htslib Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/htslib Vcs-Git: https://salsa.debian.org/med-team/htslib.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, build-essential Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 14), libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev, libhtscodecs-dev Package-List: htslib-test deb science optional arch=all libhts-dev deb libdevel optional arch=any libhts3t64 deb libs optional arch=any tabix deb science optional arch=any Checksums-Sha1: 17faf63db725c3d9e1bd391753a00b0bb0bc4425 1858118 htslib_1.24.orig.tar.gz 83bf2814fb548616e3e24513b4de901ef33a71d4 21792 htslib_1.24-3.debian.tar.xz Checksums-Sha256: 19c19ec0ea3fbbf380c79c8c6f465d3a6cc2db3694ab2ff5c3567d468099e5ef 1858118 htslib_1.24.orig.tar.gz bd1d7d8775ca6b6bbac98a14192280569d16ea27f2ce8ddbe414f4a7df922d47 21792 htslib_1.24-3.debian.tar.xz Files: 4a36b549462fac72adc758b5ac7c92e6 1858118 htslib_1.24.orig.tar.gz 4ef337f8b649f7f0761ba1a6888e5e50 21792 htslib_1.24-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmqz05cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGtZA/+PenwDuWLJ6CXcnE2FXTsCjZNJMdQGHSK kO+BWT1tnbWpLfM8VAkG36PV/WUUSb1e+3CHZzS0EvQSBtq88KpC6XiyZ1B46E1y 9nTFmTYRjfRItLDzXU+WVwFUYMclY7+WZIQo01jPg7zu9Hiz+OxvVvswggXI9qWj SOkZ5GuQESj5G7wU8JrCkWqCDupW6gYpn+dQhGreSCqItAsdkhXcI7wYxu3hmHUF uNIe9qzUW8oTlJD2TR6GU1znYngXAaJtCnEnoIRqiSFRKiNQ14cy72N8OIxRCfPZ b5NYnkDEGjWAdVjYMiJjJ40ZZ5nXGiEPgJQP+CfhSMnglfGFgblOXeFsY7Y/+UK3 WhFOPf2Ns4U4xGzKcMjC6duSglZX5T5HrwncnIzRtxz7gmqb1xVjOC2JybKjWmfH 72GTzHzHFfVDYXfNFYbLrPKYDENXvStchYbDNVbknpRTlWoKydTOIjXg+SusNhHi +N5ayWazQ5qcNmzf1Lj+ZTEUUCsQCQdhJXModcn/U/2CmjAQ/6QmU38wmbt4bpGX eBJWIqq8R972vsSxSTxRpPxwaxHVvAFtGMoiHXIngQFu41YVfElJAPRFnxTMCJfA EhVWqUCRbwjRCtbqeHlBcEwWPciITgMNZFw0aSGMa6W/xq5i5ysjWbSjoPqAeAOU vn3vAOhjfAs= =trP7 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./htslib_1.24-3.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./htslib_1.24-3.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting htslib in /build/reproducible-path/htslib-1.24 dpkg-source: info: unpacking htslib_1.24.orig.tar.gz dpkg-source: info: unpacking htslib_1.24-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision dpkg-source: info: applying fix_sequence_of_linked_libs.patch dpkg-source: info: applying trim-file-prefix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.Tggcbltj9c/sbuild.conf SHELL=/bin/sh USER=sbuild XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B --jobs-try=1 dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.24-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x dpkg-source: info: using options from /build/reproducible-path/htslib-1.24/debian/source/options: --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ debian/rules clean dh clean dh_auto_clean make -j1 distclean make[1]: Entering directory '/build/reproducible-path/htslib-1.24' rm -f test/hfile_libcurl.tmp rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* \ test/longrefs/*.tmp.* test/ref_cache/*.tmp.* test/tabix/*.tmp.* \ test/bgzf_boundaries/*.tmp.* test/*/FAIL* \ header-exports.txt shlib-exports-so.txt rm -rf htscodecs/tests/test.out rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM config_vars.h version.h rm -f htscodecs/htscodecs/*.o htscodecs/htscodecs/*.pico rm -f hts-object-files rm -f htscodecs/tests/*.o rm -f ref_cache/*.o rm -f libhts.so libhts.so.* rm -f libhts.a annot-tsv bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/pileup test/pileup_mod test/plugins-dlhts test/sam test/test_alloc test/test_bgzf test/test_expr test/test_faidx test/test_kfunc test/test_khash test/test_kstring test/test_mod test/test_nibbles test/test_realn test/test-regidx test/test_str2int test/test_time_funcs test/test_view test/test_index test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/fuzz/hts_open_fuzzer.o test/test-bcf-translate test/test-parse-reg test/test_introspection test/test-bcf_set_variant_type test/test_hfile_libcurl test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 test/thrash_threads7 rm -f htscodecs/tests/rans4x8 htscodecs/tests/rans4x16pr htscodecs/tests/arith_dynamic htscodecs/tests/tokenise_name3 htscodecs/tests/fqzcomp_qual htscodecs/tests/varint rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk htscodecs.mk rm -rf autom4te.cache make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/htslib-1.24' rm -rf test_backup/ make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts3t64/ debian/tmp/ debian/libhts-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i -v autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force autoreconf: configure.ac: tracing autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: /usr/bin/autoconf --force autoreconf: running: /usr/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: './config.sub' is created autoreconf: './config.guess' is created autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/htslib-1.24' # create clean copy of test dir cp -a test test_backup # to help with cross building, otherwise MMAP might get turned off export ac_cv_func_mmap_fixed_mapped=yes \ && autoconf \ && dh_auto_configure -- \ --enable-libcurl \ --enable-gcs \ --enable-s3 \ --enable-plugins \ --with-plugin-dir='/usr/lib/s390x-linux-gnu/htslib' \ --with-external-htscodecs \ --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/s390x-linux-gnu/htslib' ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu --enable-libcurl --enable-gcs --enable-s3 --enable-plugins --with-plugin-dir=/usr/lib/s390x-linux-gnu/htslib --with-external-htscodecs --with-plugin-path=/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/s390x-linux-gnu/htslib checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to enable C23 features... none needed checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for s390x-linux-gnu-gcc options to detect undeclared functions... none needed checking for s390x-linux-gnu-gcc options to ignore future-version functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for s390x-linux-gnu-pkg-config... /usr/bin/s390x-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for s390x-linux-gnu-gcc option to support large files... none needed checking shared library type for s390x-linux-gnu... plain .so checking whether the linker supports versioned symbols... yes checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for getpagesize... yes checking for working mmap... (cached) yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing dlsym... none required checking whether the compiler accepts -rdynamic... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for htscodecs/rANS_static4x16.h... yes checking for rans_compress_bound_4x16 in -lhtscodecs... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl/curl.h... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking for fstatat... yes checking for CMSG_LEN... yes checking for epoll... yes (edge triggered) checking for sendfile... yes, Linux-style checking whether EHOSTDOWN is declared... yes checking whether ENONET is declared... yes checking whether AI_V4MAPPED is declared... yes checking whether AI_ADDRCONFIG is declared... yes checking whether the compiler accepts -Wextra... yes checking whether the compiler accepts -Wformat... yes checking whether the compiler accepts -Wformat=2... yes checking whether the compiler accepts -Wconversion... yes checking whether the compiler accepts -Wtrampolines... yes checking whether the compiler accepts -Wstrict-aliasing... yes checking whether the compiler accepts -fstack-clash-protection... yes checking whether the compiler accepts -fstack-protector-strong... yes checking whether the compiler accepts -fcf-protection=full... no checking whether the compiler accepts -mbranch-protection=standard... no checking whether the compiler accepts -fno-delete-null-pointer-checks... yes checking whether the compiler accepts -Wl,-z,noexecstack... yes checking whether the compiler accepts -Wl,-z,relro... yes checking whether the compiler accepts -Wl,-z,now... yes checking whether the compiler accepts -Wl,--as-needed... yes checking whether the compiler accepts -Wl,--no-copy-dt-needed-entries... yes checking whether the compiler accepts -Wl,-z,nodlopen... yes checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_external.mk to htscodecs.mk make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/htslib-1.24' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.24" \ libdir=/usr/lib/s390x-linux-gnu make -j1 CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" CPPFLAGS="-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.24 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.24' s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c kstring.c: In function ‘boyer_moore’: kstring.c:468:24: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 468 | return memchr(str, pat[0], n); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c faidx.c: In function ‘fai_path’: faidx.c:1067:25: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1067 | char *fai_tmp = strstr(fa, HTS_IDX_DELIM); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o header.o header.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.24"' > version.h printf '#define HTS_CC "%s"\n#define HTS_CPPFLAGS "%s"\n#define HTS_CFLAGS "%s"\n#define HTS_LDFLAGS "%s"\n#define HTS_LIBS "%s"\n' \ 's390x-linux-gnu-gcc' \ '-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2' \ '-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects' \ '-Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic' \ '-ldeflate -lhtscodecs -llzma -lbz2 -lz -lm ' \ | sed 's/-ffile-prefix-map=[^ ]*=.//' \ > config_vars.h s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c hts.c: In function ‘hts_open_format’: hts.c:942:33: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 942 | char *rmme = NULL, *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ hts.c: In function ‘hts_hopen’: hts.c:1478:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1478 | if ((cp = strchr(mode, ','))) { | ^ hts.c: In function ‘idx_find_and_load’: hts.c:4929:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 4929 | char *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_expr.o hts_expr.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o region.o region.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c sam.c: In function ‘sam_open_mode_opts’: sam.c:5222:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5222 | if ((opts = strchr(format, ','))) { | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam_mods.o sam_mods.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o simd.o simd.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c vcf.c: In function ‘bcf_get_version’: vcf.c:168:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 168 | if (!(major = strstr(version, vcf))) { //bad format | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c cram/cram_decode.c: In function ‘cram_decode_seq’: cram/cram_decode.c:1234:35: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1234 | char *N = memchr(refp, 'N', frag_len); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘refs_load_fai’: cram/cram_io.c:2323:22: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2323 | char *fn_delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:5070:29: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5070 | fd->prefix = strdup((cp = strrchr(filename, '/')) ? cp+1 : filename); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/s390x-linux-gnu/htslib\" -c -o plugin.o plugin.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o s390x-linux-gnu-ranlib libhts.a s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c kstring.c: In function ‘boyer_moore’: kstring.c:468:24: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 468 | return memchr(str, pat[0], n); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c faidx.c: In function ‘fai_path’: faidx.c:1067:25: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1067 | char *fai_tmp = strstr(fa, HTS_IDX_DELIM); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o header.pico header.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c hts.c: In function ‘hts_open_format’: hts.c:942:33: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 942 | char *rmme = NULL, *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ hts.c: In function ‘hts_hopen’: hts.c:1478:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1478 | if ((cp = strchr(mode, ','))) { | ^ hts.c: In function ‘idx_find_and_load’: hts.c:4929:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 4929 | char *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_expr.pico hts_expr.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o region.pico region.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c sam.c: In function ‘sam_open_mode_opts’: sam.c:5222:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5222 | if ((opts = strchr(format, ','))) { | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam_mods.pico sam_mods.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o simd.pico simd.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c vcf.c: In function ‘bcf_get_version’: vcf.c:168:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 168 | if (!(major = strstr(version, vcf))) { //bad format | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c cram/cram_decode.c: In function ‘cram_decode_seq’: cram/cram_decode.c:1234:35: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1234 | char *N = memchr(refp, 'N', frag_len); | ^~~~~~ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c cram/cram_io.c: In function ‘refs_load_fai’: cram/cram_io.c:2323:22: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2323 | char *fn_delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:5070:29: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5070 | fd->prefix = strdup((cp = strrchr(filename, '/')) ? cp+1 : filename); | ^ s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/s390x-linux-gnu/htslib\" -fPIC -c -o plugin.pico plugin.c s390x-linux-gnu-gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico simd.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread ln -sf libhts.so libhts.so.3 s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o annot-tsv.o annot-tsv.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c s390x-linux-gnu-gcc -shared -Wl,-E -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup.o test/pileup.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/pileup_mod.o test/pileup_mod.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/plugins-dlhts.o test/plugins-dlhts.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_alloc.o test/test_alloc.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_alloc test/test_alloc.o s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_expr.o test/test_expr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_faidx.o test/test_faidx.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kfunc.o test/test_kfunc.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_khash.o test/test_khash.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_khash test/test_khash.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_kstring.o test/test_kstring.c In file included from test/test_kstring.c:38: test/../kstring.c: In function ‘boyer_moore’: test/../kstring.c:468:24: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 468 | return memchr(str, pat[0], n); | ^~~~~~ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o -lm s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_mod.o test/test_mod.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_nibbles.o test/test_nibbles.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_nibbles test/test_nibbles.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_str2int.o test/test_str2int.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_time_funcs.o test/test_time_funcs.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_index.o test/test_index.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-parse-reg.o test/test-parse-reg.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_introspection.o test/test_introspection.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c In file included from test/test-bcf_set_variant_type.c:30: test/../vcf.c: In function ‘bcf_get_version’: test/../vcf.c:168:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 168 | if (!(major = strstr(version, vcf))) { //bad format | ^ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_hfile_libcurl.o test/test_hfile_libcurl.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_hfile_libcurl test/test_hfile_libcurl.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk sed -e "s#@-includedir@#`pwd`#g;s#@-libdir@#`pwd`#g" htslib.pc.tmp > htslib-uninstalled.pc s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/cmsg_wrap.o ref_cache/cmsg_wrap.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/http_parser.o ref_cache/http_parser.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/listener.o ref_cache/listener.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/log_files.o ref_cache/log_files.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/main.o ref_cache/main.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/misc.o ref_cache/misc.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/ping.o ref_cache/ping.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/poll_wrap_epoll.o ref_cache/poll_wrap_epoll.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/poll_wrap_poll.o ref_cache/poll_wrap_poll.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/ref_files.o ref_cache/ref_files.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/request_handler.o ref_cache/request_handler.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/sendfile_wrap.o ref_cache/sendfile_wrap.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/server.o ref_cache/server.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/transaction.o ref_cache/transaction.c s390x-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects -Wextra -Wformat -Wformat=2 -Wconversion -Wtrampolines -Wstrict-aliasing -fstack-clash-protection -fstack-protector-strong -fno-delete-null-pointer-checks -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ref_cache/upstream.o ref_cache/upstream.c s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -Wl,-z,noexecstack -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,nodlopen -o ref_cache/ref-cache ref_cache/cmsg_wrap.o ref_cache/http_parser.o ref_cache/listener.o ref_cache/log_files.o ref_cache/main.o ref_cache/misc.o ref_cache/ping.o ref_cache/poll_wrap_epoll.o ref_cache/poll_wrap_poll.o ref_cache/ref_files.o ref_cache/request_handler.o ref_cache/sendfile_wrap.o ref_cache/server.o ref_cache/transaction.o ref_cache/upstream.o cram/pooled_alloc.o md5.o -lcurl make[2]: Leaving directory '/build/reproducible-path/htslib-1.24' make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/libhts3t64.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts3t64/ debian/libhts3t64/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/htslib-1.24' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /build/reproducible-path/htslib-1.24/test/${binary} ; \ done dh_auto_install -- prefix=/usr \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.24" \ libdir=/usr/lib/s390x-linux-gnu install -m0755 -d /build/reproducible-path/htslib-1.24/debian/tmp make -j1 install DESTDIR=/build/reproducible-path/htslib-1.24/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.24=. -fstack-protector-strong -Wformat -Werror=format-security -ffat-lto-objects -ffat-lto-objects" CPPFLAGS="-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.24 libdir=/usr/lib/s390x-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.24' mkdir -p -m 755 /build/reproducible-path/htslib-1.24/debian/tmp/usr/bin /build/reproducible-path/htslib-1.24/debian/tmp/usr/include /build/reproducible-path/htslib-1.24/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig if test -n "/usr/lib/s390x-linux-gnu/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/htslib; fi install -p -m 644 libhts.so /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.24 ln -sf libhts.so.1.24 /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so ln -sf libhts.so.1.24 /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/s390x-linux-gnu#g;s#@-PACKAGE_VERSION@#1.24#g' htslib.pc.tmp > /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc chmod 644 /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc install -p annot-tsv bgzip htsfile tabix ref_cache/ref-cache /build/reproducible-path/htslib-1.24/debian/tmp/usr/bin if test -n "hfile_libcurl.so hfile_gcs.so hfile_s3.so"; then install -p hfile_libcurl.so hfile_gcs.so hfile_s3.so /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/htslib; fi install -p -m 644 htslib/*.h /build/reproducible-path/htslib-1.24/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /build/reproducible-path/htslib-1.24/debian/tmp/usr/lib/s390x-linux-gnu/libhts.a install -p -m 644 annot-tsv.1 bgzip.1 htsfile.1 tabix.1 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man1 if test "xref_cache/ref-cache" != "x" ; then \ install -p -m 644 ref_cache/ref-cache.1 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man1 ; \ fi install -p -m 644 faidx.5 sam.5 vcf.5 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man5 install -p -m 644 htslib-s3-plugin.7 /build/reproducible-path/htslib-1.24/debian/tmp/usr/share/man/man7 make[2]: Leaving directory '/build/reproducible-path/htslib-1.24' chmod -R u\+rwX /build/reproducible-path/htslib-1.24/debian/tmp # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_install -a install -m0755 -d debian/libhts3t64/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/htslib debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.1.24 debian/tmp/usr/lib/s390x-linux-gnu/libhts.so.3 debian/libhts3t64/usr/lib/s390x-linux-gnu/ install -m0755 -d debian/libhts3t64/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man5/ install -m0755 -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -m0755 -d debian/libhts-dev/usr/lib/s390x-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/libhts.a debian/tmp/usr/lib/s390x-linux-gnu/libhts.so debian/libhts-dev/usr/lib/s390x-linux-gnu/ install -m0755 -d debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/s390x-linux-gnu/pkgconfig/ install -m0755 -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ dh_installdocs -a install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/copyright debian/libhts3t64/usr/share/doc/libhts3t64/copyright install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README.large_positions.md debian/libhts-dev/usr/share/doc/libhts-dev chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules execute_after_dh_installdocs make[1]: Entering directory '/build/reproducible-path/htslib-1.24' # Fix Perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so: No such file or directory make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/htslib-1.24' dh_installchangelogs NEWS install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -m0755 -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/.debhelper/generated/tabix/dh_installchangelogs.dch.trimmed debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_installman -a install -m0755 -d debian/libhts3t64/usr/share/man/man7/ install -p -m0644 ./htslib-s3-plugin.7 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -m0755 -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./bgzip.1 debian/tabix/usr/share/man/man1/bgzip.1 man-recode --to-code UTF-8 --suffix .dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 debian/libhts3t64/usr/share/man/man5/sam.5 debian/libhts3t64/usr/share/man/man5/vcf.5 debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 debian/tabix/usr/share/man/man1/bgzip.1 debian/tabix/usr/share/man/man1/htsfile.1 debian/tabix/usr/share/man/man1/tabix.1 dh_lintian -a install -m0755 -d debian/libhts-dev/usr/share/lintian/overrides install -p -m0644 debian/libhts-dev.lintian-overrides debian/libhts-dev/usr/share/lintian/overrides/libhts-dev dh_perl -a dh_link -a rm -f debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.3 ln -s libhts.so.1.24 debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.3 rm -f debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so ln -s libhts.so.1.24 debian/libhts-dev/usr/lib/s390x-linux-gnu/libhts.so install -m0755 -d debian/tabix/usr/share/man/man1 rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules execute_before_dh_missing make[1]: Entering directory '/build/reproducible-path/htslib-1.24' # FIXME: No idea why these files are remaining in debian/tmp rm -rf debian/tmp/usr/bin debian/tmp/usr/share/man make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_missing -a debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/htslib-1.24' # This is apparently important for the interpretation by ldc2 in sambamba dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.1.24 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/1d0f4203022225bd466ae6ceddf318837d7012.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/1d0f4203022225bd466ae6ceddf318837d7012.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.1.24 s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/be/1d0f4203022225bd466ae6ceddf318837d7012.debug debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.1.24 install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/9d5172be73fc5b448c193a2e68cfcfdf4b24eb.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/9d5172be73fc5b448c193a2e68cfcfdf4b24eb.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/ce/9d5172be73fc5b448c193a2e68cfcfdf4b24eb.debug debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5f s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5f/4b570e5a843ed4c83d82ba0e248a84537a4877.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5f/4b570e5a843ed4c83d82ba0e248a84537a4877.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/5f/4b570e5a843ed4c83d82ba0e248a84537a4877.debug debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/37 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/37/83a0f7d294f144f26a7feb2da4615d72ee3bef.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/37/83a0f7d294f144f26a7feb2da4615d72ee3bef.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/37/83a0f7d294f144f26a7feb2da4615d72ee3bef.debug debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7c s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7c/97ba441a5d3c16332d3e1b154eb4609eed77a6.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7c/97ba441a5d3c16332d3e1b154eb4609eed77a6.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7c/97ba441a5d3c16332d3e1b154eb4609eed77a6.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/fb s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/fb/79967594db2b40e1d17b20a7b8b0e43f5fe66f.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/fb/79967594db2b40e1d17b20a7b8b0e43f5fe66f.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/fb/79967594db2b40e1d17b20a7b8b0e43f5fe66f.debug debian/tabix/usr/bin/htsfile install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/06 s390x-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/06/5bdf49f5c471c6ba1d66c82451d80786235f30.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/06/5bdf49f5c471c6ba1d66c82451d80786235f30.debug s390x-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip s390x-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/06/5bdf49f5c471c6ba1d66c82451d80786235f30.debug debian/tabix/usr/bin/bgzip install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym install -m0755 -d debian/.debhelper/tabix make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_makeshlibs -a rm -f debian/libhts3t64/DEBIAN/shlibs install -m0755 -d debian/libhts3t64/DEBIAN echo "libhts 3 libhts3t64 (>= 1.24)" >> debian/libhts3t64/DEBIAN/shlibs chmod 0644 -- debian/libhts3t64/DEBIAN/shlibs dpkg-gensymbols -plibhts3t64 -Idebian/libhts3t64.symbols -Pdebian/libhts3t64 -edebian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.1.24 mv debian/.debhelper/generated/libhts3t64/triggers.new debian/.debhelper/generated/libhts3t64/triggers mv debian/libhts3t64.substvars.new debian/libhts3t64.substvars rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/libhts3t64/DEBIAN dpkg-shlibdeps -Tdebian/libhts3t64.substvars --package=libhts3t64 debian/libhts3t64/usr/lib/s390x-linux-gnu/libhts.so.1.24 debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so install -m0755 -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars --package=tabix debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_fixperms -a find debian/libhts3t64 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts3t64/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/include debian/libhts-dev/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/htslib-1.24' find debian -name simple_test_driver.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/htslib-1.24' dh_strip_nondeterminism -a dh_compress -a cd debian/libhts3t64 chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.24' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian cd '/build/reproducible-path/htslib-1.24' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/build/reproducible-path/htslib-1.24' dh_installdeb -a install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers install -m0755 -d debian/libhts-dev/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_computeautosubstvars -a mv debian/tabix.substvars.new debian/tabix.substvars mv debian/tabix.substvars.new debian/tabix.substvars mv debian/tabix.substvars.new debian/tabix.substvars dh_gencontrol -a install -m0755 -d debian/libhts3t64/DEBIAN install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64-dbgsym -ldebian/changelog -T/dev/null -cdebian/.debhelper/generated/libhts3t64/rewritten-dctrl -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym -DDepends="libhts3t64 (= \${binary:Version})" -DDescription="debug symbols for libhts3t64" -DBuild-Ids="3783a0f7d294f144f26a7feb2da4615d72ee3bef 5f4b570e5a843ed4c83d82ba0e248a84537a4877 be1d0f4203022225bd466ae6ceddf318837d7012 ce9d5172be73fc5b448c193a2e68cfcfdf4b24eb" -DSection=debug -DMulti-Arch=same -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/.debhelper/generated/libhts3t64/rewritten-dctrl -Pdebian/libhts3t64 dpkg-gencontrol: warning: Pre-Depends field of package libhts3t64: substitution variable ${misc:Pre-Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libhts3t64: substitution variable ${misc:Depends} used, but is not defined chmod 0644 -- debian/libhts3t64/DEBIAN/control install -m0755 -d debian/libhts-dev/DEBIAN dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev dpkg-gencontrol: warning: Depends field of package libhts-dev: substitution variable ${misc:Depends} used, but is not defined chmod 0644 -- debian/libhts-dev/DEBIAN/control install -m0755 -d debian/tabix/DEBIAN install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix-dbgsym -ldebian/changelog -T/dev/null -cdebian/.debhelper/generated/tabix/rewritten-dctrl -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym -DDepends="tabix (= \${binary:Version})" -DDescription="debug symbols for tabix" -DBuild-Ids="065bdf49f5c471c6ba1d66c82451d80786235f30 7c97ba441a5d3c16332d3e1b154eb4609eed77a6 fb79967594db2b40e1d17b20a7b8b0e43f5fe66f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/.debhelper/generated/tabix/rewritten-dctrl -Pdebian/tabix dpkg-gencontrol: warning: Depends field of package tabix: substitution variable ${misc:Depends} used, but is not defined chmod 0644 -- debian/tabix/DEBIAN/control dh_md5sums -a install -m0755 -d debian/libhts3t64/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts3t64/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN cd debian/.debhelper/libhts3t64/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums install -m0755 -d debian/libhts-dev/DEBIAN cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums install -m0755 -d debian/tabix/DEBIAN cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/libhts3t64 .. dpkg-deb: building package 'libhts3t64' in '../libhts3t64_1.24-3_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/libhts3t64/dbgsym-root .. dpkg-deb: building package 'libhts3t64-dbgsym' in '../libhts3t64-dbgsym_1.24-3_s390x.deb'. dpkg-deb --root-owner-group --build debian/libhts-dev .. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.24-3_s390x.deb'. dpkg-deb --root-owner-group --build debian/tabix .. dpkg-deb: building package 'tabix' in '../tabix_1.24-3_s390x.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/tabix/dbgsym-root .. dpkg-deb: building package 'tabix-dbgsym' in '../tabix-dbgsym_1.24-3_s390x.deb'. dpkg-genbuildinfo --build=any -O../htslib_1.24-3_s390x.buildinfo dpkg-genchanges --build=any -O../htslib_1.24-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/htslib-1.24/debian/source/options: --extend-diff-ignore=^(\.travis\.yml|README.md|aclocal.m4|config.h.in|configure)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-09-27T00:24:53Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands Sun, 27 Sep 2026 00:24:53 +0000 | +------------------------------------------------------------------------------+ rm -Rf /build/reproducible-path/htslib-1.24/ -------------------------------------------- I: Finished running 'rm -Rf /build/reproducible-path/htslib-1.24/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 27 Sep 2026 00:24:53 +0000 | +------------------------------------------------------------------------------+ htslib_1.24-3_s390x.changes: ---------------------------- Format: 1.8 Date: Wed, 23 Sep 2026 12:00:00 +0200 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.24-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libhts-dev - development files for the HTSlib libhts3t64 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Closes: 1148751 Changes: htslib (1.24-3) unstable; urgency=medium . * d/libhts3t64.symbols: restore (arch=amd64 arm64 hurd-amd64 x32) qualifier on htslib_nibble2base (Closes: #1148751) Checksums-Sha1: 5d05ca46c622e57ed6484a7f2b083a0fa1443e76 7402 htslib_1.24-3_s390x.buildinfo 80f748ca98d12bb44d1c1eae3d3338f9d53b225b 1797680 libhts-dev_1.24-3_s390x.deb c2c343f204d2eee7d46e01fda9f2fc20eeb08d2f 1505168 libhts3t64-dbgsym_1.24-3_s390x.deb 34fc5896b650b6dc3b84b17d6667602a61369e2c 478908 libhts3t64_1.24-3_s390x.deb 16360ed3cb93a0b17b926f4d742f16ec19c96752 3431556 tabix-dbgsym_1.24-3_s390x.deb 528812d2e5848ab3d90274c24094b1646febd5cb 495008 tabix_1.24-3_s390x.deb Checksums-Sha256: 183d06e86e6da42a6bf3357cefb68c94b37d0492541c3b40fbcacd1d10e98380 7402 htslib_1.24-3_s390x.buildinfo bdc6f8aa7824da41666ae848c11771c1fbcd3f29d7533e151f435e0453de64b7 1797680 libhts-dev_1.24-3_s390x.deb 60c1279103c583419442ef2065059e9e6140c5ac49d681fce9b2472c41fecc7a 1505168 libhts3t64-dbgsym_1.24-3_s390x.deb b66146ee05b7123cedf5a61b55904cdfa752ada609892c39688d0526bc9d8436 478908 libhts3t64_1.24-3_s390x.deb 808c854f6195270e59e5723f0058751ab432c329f2cfa912cc53974a1741f28d 3431556 tabix-dbgsym_1.24-3_s390x.deb 2687d2f1ecd3ab9b8314e1da8df9f7348c3d2418f9a3a81d0f3de1693479f9df 495008 tabix_1.24-3_s390x.deb Files: 5448ccbace9903c507c041ee78bf3b10 7402 science optional htslib_1.24-3_s390x.buildinfo a90247d38399e64de2e32f00f6659643 1797680 libdevel optional libhts-dev_1.24-3_s390x.deb 763421567e64065aa2f64081416e8ffb 1505168 debug optional libhts3t64-dbgsym_1.24-3_s390x.deb 54595c87263f2bbc9ad5460dace1200d 478908 libs optional libhts3t64_1.24-3_s390x.deb 98f421d11860d032bf49de6cd20f3d73 3431556 debug optional tabix-dbgsym_1.24-3_s390x.deb bff727964421060151c3af9b1dd6f060 495008 science optional tabix_1.24-3_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 27 Sep 2026 00:24:53 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: htslib Binary: libhts-dev libhts3t64 libhts3t64-dbgsym tabix tabix-dbgsym Architecture: s390x Version: 1.24-3 Checksums-Md5: a90247d38399e64de2e32f00f6659643 1797680 libhts-dev_1.24-3_s390x.deb 763421567e64065aa2f64081416e8ffb 1505168 libhts3t64-dbgsym_1.24-3_s390x.deb 54595c87263f2bbc9ad5460dace1200d 478908 libhts3t64_1.24-3_s390x.deb 98f421d11860d032bf49de6cd20f3d73 3431556 tabix-dbgsym_1.24-3_s390x.deb bff727964421060151c3af9b1dd6f060 495008 tabix_1.24-3_s390x.deb Checksums-Sha1: 80f748ca98d12bb44d1c1eae3d3338f9d53b225b 1797680 libhts-dev_1.24-3_s390x.deb c2c343f204d2eee7d46e01fda9f2fc20eeb08d2f 1505168 libhts3t64-dbgsym_1.24-3_s390x.deb 34fc5896b650b6dc3b84b17d6667602a61369e2c 478908 libhts3t64_1.24-3_s390x.deb 16360ed3cb93a0b17b926f4d742f16ec19c96752 3431556 tabix-dbgsym_1.24-3_s390x.deb 528812d2e5848ab3d90274c24094b1646febd5cb 495008 tabix_1.24-3_s390x.deb Checksums-Sha256: bdc6f8aa7824da41666ae848c11771c1fbcd3f29d7533e151f435e0453de64b7 1797680 libhts-dev_1.24-3_s390x.deb 60c1279103c583419442ef2065059e9e6140c5ac49d681fce9b2472c41fecc7a 1505168 libhts3t64-dbgsym_1.24-3_s390x.deb b66146ee05b7123cedf5a61b55904cdfa752ada609892c39688d0526bc9d8436 478908 libhts3t64_1.24-3_s390x.deb 808c854f6195270e59e5723f0058751ab432c329f2cfa912cc53974a1741f28d 3431556 tabix-dbgsym_1.24-3_s390x.deb 2687d2f1ecd3ab9b8314e1da8df9f7348c3d2418f9a3a81d0f3de1693479f9df 495008 tabix_1.24-3_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 27 Sep 2026 00:24:52 +0000 Build-Path: /build/reproducible-path/htslib-1.24 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), binutils (= 2.47-6), binutils-common (= 2.47-6), binutils-x86-64-linux-gnu (= 2.47-6), bsdextrautils (= 2.42.4-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), comerr-dev (= 2.1-1.47.4-1+b1), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.22.1-3), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libbinutils (= 2.47-6), libblkid1 (= 2.42.4-1), libbrotli-dev (= 1.2.0-4+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-6), libc-dev-bin (= 2.43-6), libc-gconv-modules-extra (= 2.43-6), libc6 (= 2.43-6), libc6-dev (= 2.43-6), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libcom-err2 (= 1.47.4-1+b1), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcurl4-gnutls (= 8.23.0~rc1-2), libcurl4-gnutls-dev (= 8.23.0~rc1-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libhogweed6t64 (= 3.10.2-1+b1), libhtscodecs-dev (= 1.6.7-1), libhtscodecs2 (= 1.6.7-1), libhwasan0 (= 16.2.0-3), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblsan0 (= 16.2.0-3), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls-dev (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpkgconf7 (= 2.5.1-4), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libquadmath0 (= 16.2.0-3), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2.1), libsframe3 (= 2.47-6), libsmartcols1 (= 2.42.4-1), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.4-1), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsystemd0 (= 262-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262-1), libunbound8 (= 1.26.1-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.8-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-2), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), nettle-dev (= 3.10.2-1+b1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1790157600" +------------------------------------------------------------------------------+ | Package contents Sun, 27 Sep 2026 00:24:54 +0000 | +------------------------------------------------------------------------------+ libhts-dev_1.24-3_s390x.deb --------------------------- new Debian package, version 2.0. size 1797680 bytes: control archive=2048 bytes. 1222 bytes, 27 lines control 2483 bytes, 38 lines md5sums Package: libhts-dev Source: htslib Version: 1.24-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 7600 Depends: libbz2-dev, libhts3t64 (= 1.24-3), libcurl4-gnutls-dev, libdeflate-dev, liblzma-dev, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. . For compatibility with sambamba, the internal routine cram_to_bam was exported, hereto adopting a patch found in guix. drwxr-xr-x root/root 0 2026-09-23 10:00 ./ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/include/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/include/htslib/ -rw-r--r-- root/root 17985 2026-07-09 09:41 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 24614 2026-07-09 09:41 ./usr/include/htslib/cram.h -rw-r--r-- root/root 15102 2026-07-09 09:41 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 14065 2026-07-09 09:41 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 58286 2026-07-09 09:41 ./usr/include/htslib/hts.h -rw-r--r-- root/root 11143 2026-07-09 09:41 ./usr/include/htslib/hts_alloc.h -rw-r--r-- root/root 4948 2026-07-09 09:41 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11729 2026-07-09 09:41 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 5991 2026-07-09 09:41 ./usr/include/htslib/hts_expr.h -rw-r--r-- root/root 3958 2026-07-09 09:41 ./usr/include/htslib/hts_log.h -rw-r--r-- root/root 2842 2026-07-09 09:41 ./usr/include/htslib/hts_os.h -rw-r--r-- root/root 5646 2026-07-09 09:41 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2828 2026-07-09 09:41 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 28269 2026-07-09 09:41 ./usr/include/htslib/khash.h -rw-r--r-- root/root 4050 2026-07-09 09:41 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5189 2026-07-09 09:41 ./usr/include/htslib/klist.h -rw-r--r-- root/root 3733 2026-07-09 09:41 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 3295 2026-07-09 09:41 ./usr/include/htslib/kroundup.h -rw-r--r-- root/root 9357 2026-07-09 09:41 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 11585 2026-07-09 09:41 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 14267 2026-07-09 09:41 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 8881 2026-07-09 09:41 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 93048 2026-07-09 09:41 ./usr/include/htslib/sam.h -rw-r--r-- root/root 20839 2026-07-09 09:41 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 5194 2026-07-09 09:41 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 12969 2026-07-09 09:41 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 71003 2026-07-09 09:41 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1686 2026-07-09 09:41 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4919 2026-07-09 09:41 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 7216018 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/libhts.so -> libhts.so.1.24 drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 668 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/ 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517 bytes, 13 lines control 424 bytes, 4 lines md5sums Package: libhts3t64-dbgsym Source: htslib Version: 1.24-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1558 Depends: libhts3t64 (= 1.24-3) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libhts3t64 Build-Ids: 3783a0f7d294f144f26a7feb2da4615d72ee3bef 5f4b570e5a843ed4c83d82ba0e248a84537a4877 be1d0f4203022225bd466ae6ceddf318837d7012 ce9d5172be73fc5b448c193a2e68cfcfdf4b24eb drwxr-xr-x root/root 0 2026-09-23 10:00 ./ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/37/ -rw-r--r-- root/root 50416 2026-09-23 10:00 ./usr/lib/debug/.build-id/37/83a0f7d294f144f26a7feb2da4615d72ee3bef.debug drwxr-xr-x root/root 0 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2 lines triggers Package: libhts3t64 Source: htslib Version: 1.24-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1189 Depends: libbz2-1.0, libc6 (>= 2.38), libcurl4-gnutls (>= 8.20.0-3~), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), libssl3t64 (>= 3.0.0), zlib1g (>= 1:1.1.4) Breaks: libhts3 (<< 1.24-3), libtabixpp (<< 1.0.0-5~), samtools (<< 1.17~) Replaces: libhts3 Provides: libhts3 (= 1.24-3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. drwxr-xr-x root/root 0 2026-09-23 10:00 ./ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/htslib/ -rw-r--r-- root/root 10088 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/htslib/hfile_gcs.so -rw-r--r-- root/root 34832 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/htslib/hfile_libcurl.so -rw-r--r-- root/root 51048 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/htslib/hfile_s3.so -rw-r--r-- root/root 1009840 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/libhts.so.1.24 lrwxrwxrwx root/root 0 2026-09-23 10:00 ./usr/lib/s390x-linux-gnu/libhts.so.3 -> libhts.so.1.24 drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/doc/libhts3t64/ -rw-r--r-- root/root 2625 2026-09-23 10:00 ./usr/share/doc/libhts3t64/changelog.Debian.gz -rw-r--r-- root/root 45327 2026-07-09 09:41 ./usr/share/doc/libhts3t64/changelog.gz -rw-r--r-- root/root 3951 2026-09-23 10:00 ./usr/share/doc/libhts3t64/copyright drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/man/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/man/man5/ -rw-r--r-- root/root 2452 2026-09-23 10:00 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1537 2026-09-23 10:00 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1857 2026-09-23 10:00 ./usr/share/man/man5/vcf.5.gz drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/man/man7/ -rw-r--r-- root/root 3416 2026-09-23 10:00 ./usr/share/man/man7/htslib-s3-plugin.7.gz tabix-dbgsym_1.24-3_s390x.deb ----------------------------- new Debian package, version 2.0. size 3431556 bytes: control archive=656 bytes. 444 bytes, 12 lines control 318 bytes, 3 lines md5sums Package: tabix-dbgsym Source: htslib Version: 1.24-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 5916 Depends: tabix (= 1.24-3) Section: debug Priority: optional Description: debug symbols for tabix Build-Ids: 065bdf49f5c471c6ba1d66c82451d80786235f30 7c97ba441a5d3c16332d3e1b154eb4609eed77a6 fb79967594db2b40e1d17b20a7b8b0e43f5fe66f drwxr-xr-x root/root 0 2026-09-23 10:00 ./ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/06/ -rw-r--r-- root/root 1721904 2026-09-23 10:00 ./usr/lib/debug/.build-id/06/5bdf49f5c471c6ba1d66c82451d80786235f30.debug drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/7c/ -rw-r--r-- root/root 2191232 2026-09-23 10:00 ./usr/lib/debug/.build-id/7c/97ba441a5d3c16332d3e1b154eb4609eed77a6.debug drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 2131040 2026-09-23 10:00 ./usr/lib/debug/.build-id/fb/79967594db2b40e1d17b20a7b8b0e43f5fe66f.debug drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-09-23 10:00 ./usr/share/doc/tabix-dbgsym -> tabix tabix_1.24-3_s390x.deb ---------------------- new Debian package, version 2.0. size 495008 bytes: control archive=1140 bytes. 1014 bytes, 21 lines control 545 bytes, 9 lines md5sums Package: tabix Source: htslib Version: 1.24-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 2491 Depends: libbz2-1.0, libc6 (>= 2.38), libdeflate0 (>= 1.0), libhtscodecs2 (>= 1.3.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools. Commands: bgzip, htsfile, tabix drwxr-xr-x root/root 0 2026-09-23 10:00 ./ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/bin/ -rwxr-xr-x root/root 710840 2026-09-23 10:00 ./usr/bin/bgzip -rwxr-xr-x root/root 870648 2026-09-23 10:00 ./usr/bin/htsfile -rwxr-xr-x root/root 895224 2026-09-23 10:00 ./usr/bin/tabix drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/doc/tabix/ -rw-r--r-- root/root 2626 2026-09-23 10:00 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 45327 2026-07-09 09:41 ./usr/share/doc/tabix/changelog.gz -rw-r--r-- root/root 3951 2026-09-23 10:00 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/man/ drwxr-xr-x root/root 0 2026-09-23 10:00 ./usr/share/man/man1/ -rw-r--r-- root/root 3062 2026-09-23 10:00 ./usr/share/man/man1/bgzip.1.gz -rw-r--r-- root/root 1916 2026-09-23 10:00 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 3647 2026-09-23 10:00 ./usr/share/man/man1/tabix.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/build/reproducible-path/resolver-ZblOc1/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Sources [1423 B] Get:5 copy:/build/reproducible-path/resolver-ZblOc1/apt_archive ./ Packages [1502 B] Fetched 3540 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libappstream5 : Depends: libcurl4-gnutls (>= 8.20.0-3~) but it is not going to be installed E: Broken packages apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build Sun, 27 Sep 2026 00:25:01 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 27 Sep 2026 00:25:01 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 27 Sep 2026 00:25:02 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 118 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 14 Job: htslib_1.24-3 Lintian: error Machine Architecture: amd64 Package: htslib Package-Time: 144 Source-Version: 1.24-3 Space: n/a Status: successful Version: 1.24-3 -------------------------------------------------------------------------------- Finished at 2026-09-27T00:24:53Z Build needed 00:02:24, no disk space