sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.9-10 (mips) Mon, 15 Apr 2019 08:33:29 +0000 | +==============================================================================+ Package: htslib Version: 1.9-10 Source Version: 1.9-10 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-79f7b163-849b-4a6a-91ea-65473b30a03d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main mips Packages [7975 kB] Fetched 7975 kB in 2s (4162 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1303 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-10 (dsc) [2345 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-10 (tar) [1286 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-10 (diff) [14.9 kB] Fetched 1303 kB in 0s (37.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-u2CRTV/htslib-1.9' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-u2CRTV' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-yMkm1A/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-yMkm1A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yMkm1A/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-yMkm1A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yMkm1A/apt_archive ./ Sources [360 B] Get:5 copy:/<>/resolver-yMkm1A/apt_archive ./ Packages [449 B] Fetched 1766 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips-linux-gnu cpp-8-mips-linux-gnu cpp-mips-linux-gnu cross-config crossbuild-essential-mips dpkg-cross file g++-8-mips-linux-gnu g++-mips-linux-gnu gcc-8-cross-base gcc-8-mips-linux-gnu gcc-8-mips-linux-gnu-base gcc-mips-linux-gnu libatomic1-mips-cross libc6-dev-mips-cross libc6-mips-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips-cross libgcc1-mips-cross libgomp1-mips-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips-cross libstdc++6-mips-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mips-linux-gnu gcc-8-doc libstdc++6-8-dbg-mips-cross gcc-8-multilib-mips-linux-gnu libgcc1-dbg-mips-cross libgomp1-dbg-mips-cross libitm1-dbg-mips-cross libatomic1-dbg-mips-cross libasan5-dbg-mips-cross liblsan0-dbg-mips-cross libtsan0-dbg-mips-cross libubsan1-dbg-mips-cross libmpx2-dbg-mips-cross libquadmath0-dbg-mips-cross manpages-dev autoconf automake libtool flex bison gdb-mips-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips-linux-gnu cpp-8-mips-linux-gnu cpp-mips-linux-gnu cross-config crossbuild-essential-mips dpkg-cross file g++-8-mips-linux-gnu g++-mips-linux-gnu gcc-8-cross-base gcc-8-mips-linux-gnu gcc-8-mips-linux-gnu-base gcc-mips-linux-gnu libatomic1-mips-cross libc6-dev-mips-cross libc6-mips-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips-cross libgcc1-mips-cross libgomp1-mips-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips-cross libstdc++6-mips-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips-cross sbuild-build-depends-core-dummy:mips sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-yMkm1A/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips-linux-gnu amd64 2.31.1-16 [2488 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips-linux-gnu-base amd64 8.3.0-4cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mips-linux-gnu amd64 8.3.0-4cross1 [6284 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-4cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips-cross all 2.28-7cross1 [1215 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips-cross all 1:8.3.0-4cross1 [45.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips-cross all 8.3.0-4cross1 [68.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips-cross all 8.3.0-4cross1 [6636 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mips-cross all 8.3.0-4cross1 [208 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips-linux-gnu amd64 8.3.0-4cross1 [6694 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips-cross all 8.3.0-4cross1 [304 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips-cross all 4.19.20-1cross1 [1223 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips-cross all 2.28-7cross1 [2290 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mips-cross all 8.3.0-4cross1 [1519 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mips-linux-gnu amd64 8.3.0-4cross1 [6856 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips all 12.6 [6560 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (59.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-mips. Preparing to unpack .../40-crossbuild-essential-mips_12.6_all.deb ... Unpacking crossbuild-essential-mips (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mips. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-core-dummy:mips (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-mips-linux-gnu (2.31.1-16) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-4cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up gcc-8-mips-linux-gnu-base:amd64 (8.3.0-4cross1) ... Setting up cpp-8-mips-linux-gnu (8.3.0-4cross1) ... Setting up libc6-mips-cross (2.28-7cross1) ... Setting up linux-libc-dev-mips-cross (4.19.20-1cross1) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-mips-linux-gnu (4:8.3.0-1) ... Setting up libc6-dev-mips-cross (2.28-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgomp1-mips-cross (8.3.0-4cross1) ... Setting up libgcc1-mips-cross (1:8.3.0-4cross1) ... Setting up libatomic1-mips-cross (8.3.0-4cross1) ... Setting up libgcc-8-dev-mips-cross (8.3.0-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up gcc-8-mips-linux-gnu (8.3.0-4cross1) ... Setting up libstdc++6-mips-cross (8.3.0-4cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-mips-cross (8.3.0-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-8-mips-linux-gnu (8.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-mips-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mips (12.6) ... Setting up sbuild-build-depends-core-dummy:mips (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-yMkm1A/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-yMkm1A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yMkm1A/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-yMkm1A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yMkm1A/apt_archive ./ Sources [480 B] Get:5 copy:/<>/resolver-yMkm1A/apt_archive ./ Packages [568 B] Fetched 2011 B in 0s (128 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 836 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-yMkm1A/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [836 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 836 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips. (Reading database ... 15107 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-essential-dummy:mips (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev dpkg-deb: building package 'sbuild-build-depends-htslib-dummy' in '/<>/resolver-yMkm1A/apt_archive/sbuild-build-depends-htslib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-htslib-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-yMkm1A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yMkm1A/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-yMkm1A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yMkm1A/apt_archive ./ Sources [676 B] Get:5 copy:/<>/resolver-yMkm1A/apt_archive ./ Packages [758 B] Fetched 2397 B in 0s (0 B/s) Reading package lists... Reading package lists... Install htslib build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:mips gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips libbsd0 libbz2-1.0:mips libbz2-dev:mips libc6:mips libc6-dev:mips libcom-err2:mips libcroco3 libcurl3-gnutls:mips libcurl4-gnutls-dev:mips libdb5.3:mips libdeflate-dev:mips libdeflate0:mips libelf1 libffi6:mips libfile-stripnondeterminism-perl libgcc-8-dev:mips libgcc1:mips libgcrypt20:mips libglib2.0-0 libgmp10:mips libgnutls30:mips libgomp1:mips libgpg-error0:mips libgssapi-krb5-2:mips libhogweed4:mips libidn2-0:mips libk5crypto3:mips libkeyutils1:mips libkrb5-3:mips libkrb5support0:mips libldap-2.4-2:mips libldap-common liblzma-dev:mips liblzma5:mips libncurses6 libnettle6:mips libnghttp2-14:mips libp11-kit0:mips libpipeline1 libpsl5:mips librtmp1:mips libsasl2-2:mips libsasl2-modules-db:mips libsigsegv2 libssh2-1:mips libssl-dev:mips libssl1.1:mips libstdc++-8-dev:mips libstdc++6:mips libtasn1-6:mips libtool libuchardet0 libunistring2:mips linux-libc-dev:mips m4 man-db po-debconf zlib1g:mips zlib1g-dev:mips Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips libc-l10n:mips locales:mips manpages-dev:mips libcurl4-doc:mips libgnutls28-dev:mips libidn11-dev:mips libkrb5-dev:mips libldap2-dev:mips librtmp-dev:mips libssh2-1-dev:mips pkg-config:mips rng-tools:mips gnutls-bin:mips krb5-doc:mips krb5-user:mips liblzma-doc:mips libssl-doc:mips libstdc++-8-doc:mips libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips ca-certificates:mips libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips krb5-locales:mips libgpm2 publicsuffix:mips libsasl2-modules:mips libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:mips gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips libbsd0 libbz2-1.0:mips libbz2-dev:mips libc6:mips libc6-dev:mips libcom-err2:mips libcroco3 libcurl3-gnutls:mips libcurl4-gnutls-dev:mips libdb5.3:mips libdeflate-dev:mips libdeflate0:mips libelf1 libffi6:mips libfile-stripnondeterminism-perl libgcc-8-dev:mips libgcc1:mips libgcrypt20:mips libglib2.0-0 libgmp10:mips libgnutls30:mips libgomp1:mips libgpg-error0:mips libgssapi-krb5-2:mips libhogweed4:mips libidn2-0:mips libk5crypto3:mips libkeyutils1:mips libkrb5-3:mips libkrb5support0:mips libldap-2.4-2:mips libldap-common liblzma-dev:mips liblzma5:mips libncurses6 libnettle6:mips libnghttp2-14:mips libp11-kit0:mips libpipeline1 libpsl5:mips librtmp1:mips libsasl2-2:mips libsasl2-modules-db:mips libsigsegv2 libssh2-1:mips libssl-dev:mips libssl1.1:mips libstdc++-8-dev:mips libstdc++6:mips libtasn1-6:mips libtool libuchardet0 libunistring2:mips linux-libc-dev:mips m4 man-db po-debconf sbuild-build-depends-htslib-dummy:mips zlib1g:mips zlib1g-dev:mips 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 27.2 MB of archives. After this operation, 108 MB of additional disk space will be used. Get:1 copy:/<>/resolver-yMkm1A/apt_archive ./ sbuild-build-depends-htslib-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mips gcc-8-base mips 8.3.0-6 [191 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mips libgcc1 mips 1:8.3.0-6 [45.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mips libc6 mips 2.28-8 [2391 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mips libatomic1 mips 8.3.0-6 [6632 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mips libbz2-1.0 mips 1.0.6-9 [45.1 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mips linux-libc-dev mips 4.19.28-2 [1152 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mips libc6-dev mips 2.28-8 [2291 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mips libbz2-dev mips 1.0.6-9 [31.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mips libcom-err2 mips 1.45.0-1 [68.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mips libgmp10 mips 2:6.1.2+dfsg-4 [219 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mips libnettle6 mips 3.4.1-1 [237 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mips libhogweed4 mips 3.4.1-1 [132 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mips libunistring2 mips 0.9.10-1 [361 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main mips libidn2-0 mips 2.0.5-1 [74.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main mips libffi6 mips 3.2.1-9 [19.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main mips libp11-kit0 mips 0.23.15-2 [262 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main mips libtasn1-6 mips 4.13-3 [49.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main mips libgnutls30 mips 3.6.7-2 [979 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main mips libkeyutils1 mips 1.6-6 [14.3 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main mips libkrb5support0 mips 1.17-2 [64.5 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main mips libk5crypto3 mips 1.17-2 [125 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main mips libssl1.1 mips 1.1.1b-1 [1160 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main mips libkrb5-3 mips 1.17-2 [337 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main mips libgssapi-krb5-2 mips 1.17-2 [141 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main mips libdb5.3 mips 5.3.28+dfsg1-0.6 [588 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main mips libsasl2-modules-db mips 2.1.27+dfsg-1 [67.9 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main mips libsasl2-2 mips 2.1.27+dfsg-1 [101 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main mips libldap-2.4-2 mips 2.4.47+dfsg-3 [201 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main mips libnghttp2-14 mips 1.37.0-1 [79.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main mips libpsl5 mips 0.20.2-2 [53.2 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main mips zlib1g mips 1:1.2.11.dfsg-1 [89.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main mips librtmp1 mips 2.4+20151223.gitfa8646d.1-2 [55.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mips libgpg-error0 mips 1.35-1 [68.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main mips libgcrypt20 mips 1.8.4-5 [534 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main mips libssh2-1 mips 1.8.0-2.1 [133 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main mips libcurl3-gnutls mips 7.64.0-2 [308 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main mips libcurl4-gnutls-dev mips 7.64.0-2 [425 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mips libdeflate0 mips 1.2-1 [48.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mips libdeflate-dev mips 1.2-1 [41.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mips libgomp1 mips 8.3.0-6 [70.0 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main mips libgcc-8-dev mips 8.3.0-6 [207 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main mips liblzma5 mips 5.2.4-1 [153 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mips liblzma-dev mips 5.2.4-1 [215 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mips libssl-dev mips 1.1.1b-1 [1591 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main mips libstdc++6 mips 8.3.0-6 [342 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main mips libstdc++-8-dev mips 8.3.0-6 [1516 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main mips zlib1g-dev mips 1:1.2.11.dfsg-1 [212 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.2 MB in 0s (54.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15107 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... 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Unpacking libatomic1:mips (8.3.0-6) ... Selecting previously unselected package libbz2-1.0:mips. Preparing to unpack .../32-libbz2-1.0_1.0.6-9_mips.deb ... Unpacking libbz2-1.0:mips (1.0.6-9) ... Selecting previously unselected package linux-libc-dev:mips. Preparing to unpack .../33-linux-libc-dev_4.19.28-2_mips.deb ... Unpacking linux-libc-dev:mips (4.19.28-2) ... Selecting previously unselected package libc6-dev:mips. Preparing to unpack .../34-libc6-dev_2.28-8_mips.deb ... Unpacking libc6-dev:mips (2.28-8) ... Selecting previously unselected package libbz2-dev:mips. Preparing to unpack .../35-libbz2-dev_1.0.6-9_mips.deb ... Unpacking libbz2-dev:mips (1.0.6-9) ... Selecting previously unselected package libcom-err2:mips. Preparing to unpack .../36-libcom-err2_1.45.0-1_mips.deb ... Unpacking libcom-err2:mips (1.45.0-1) ... Selecting previously unselected package libgmp10:mips. Preparing to unpack .../37-libgmp10_2%3a6.1.2+dfsg-4_mips.deb ... Unpacking libgmp10:mips (2:6.1.2+dfsg-4) ... Selecting previously unselected package libnettle6:mips. Preparing to unpack .../38-libnettle6_3.4.1-1_mips.deb ... Unpacking libnettle6:mips (3.4.1-1) ... Selecting previously unselected package libhogweed4:mips. Preparing to unpack .../39-libhogweed4_3.4.1-1_mips.deb ... Unpacking libhogweed4:mips (3.4.1-1) ... Selecting previously unselected package libunistring2:mips. Preparing to unpack .../40-libunistring2_0.9.10-1_mips.deb ... Unpacking libunistring2:mips (0.9.10-1) ... Selecting previously unselected package libidn2-0:mips. Preparing to unpack .../41-libidn2-0_2.0.5-1_mips.deb ... Unpacking libidn2-0:mips (2.0.5-1) ... Selecting previously unselected package libffi6:mips. Preparing to unpack .../42-libffi6_3.2.1-9_mips.deb ... Unpacking libffi6:mips (3.2.1-9) ... Selecting previously unselected package libp11-kit0:mips. Preparing to unpack .../43-libp11-kit0_0.23.15-2_mips.deb ... Unpacking libp11-kit0:mips (0.23.15-2) ... Selecting previously unselected package libtasn1-6:mips. Preparing to unpack .../44-libtasn1-6_4.13-3_mips.deb ... Unpacking libtasn1-6:mips (4.13-3) ... Selecting previously unselected package libgnutls30:mips. Preparing to unpack .../45-libgnutls30_3.6.7-2_mips.deb ... Unpacking libgnutls30:mips (3.6.7-2) ... Selecting previously unselected package libkeyutils1:mips. Preparing to unpack .../46-libkeyutils1_1.6-6_mips.deb ... Unpacking libkeyutils1:mips (1.6-6) ... Selecting previously unselected package libkrb5support0:mips. Preparing to unpack .../47-libkrb5support0_1.17-2_mips.deb ... Unpacking libkrb5support0:mips (1.17-2) ... Selecting previously unselected package libk5crypto3:mips. Preparing to unpack .../48-libk5crypto3_1.17-2_mips.deb ... Unpacking libk5crypto3:mips (1.17-2) ... Selecting previously unselected package libssl1.1:mips. Preparing to unpack .../49-libssl1.1_1.1.1b-1_mips.deb ... Unpacking libssl1.1:mips (1.1.1b-1) ... Selecting previously unselected package libkrb5-3:mips. Preparing to unpack .../50-libkrb5-3_1.17-2_mips.deb ... Unpacking libkrb5-3:mips (1.17-2) ... Selecting previously unselected package libgssapi-krb5-2:mips. Preparing to unpack .../51-libgssapi-krb5-2_1.17-2_mips.deb ... Unpacking libgssapi-krb5-2:mips (1.17-2) ... Selecting previously unselected package libdb5.3:mips. Preparing to unpack .../52-libdb5.3_5.3.28+dfsg1-0.6_mips.deb ... Unpacking libdb5.3:mips (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:mips. Preparing to unpack .../53-libsasl2-modules-db_2.1.27+dfsg-1_mips.deb ... Unpacking libsasl2-modules-db:mips (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:mips. Preparing to unpack .../54-libsasl2-2_2.1.27+dfsg-1_mips.deb ... Unpacking libsasl2-2:mips (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../55-libldap-common_2.4.47+dfsg-3_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3) ... Selecting previously unselected package libldap-2.4-2:mips. Preparing to unpack .../56-libldap-2.4-2_2.4.47+dfsg-3_mips.deb ... Unpacking libldap-2.4-2:mips (2.4.47+dfsg-3) ... Selecting previously unselected package libnghttp2-14:mips. Preparing to unpack .../57-libnghttp2-14_1.37.0-1_mips.deb ... Unpacking libnghttp2-14:mips (1.37.0-1) ... Selecting previously unselected package libpsl5:mips. Preparing to unpack .../58-libpsl5_0.20.2-2_mips.deb ... Unpacking libpsl5:mips (0.20.2-2) ... Selecting previously unselected package zlib1g:mips. Preparing to unpack .../59-zlib1g_1%3a1.2.11.dfsg-1_mips.deb ... Unpacking zlib1g:mips (1:1.2.11.dfsg-1) ... Selecting previously unselected package librtmp1:mips. Preparing to unpack .../60-librtmp1_2.4+20151223.gitfa8646d.1-2_mips.deb ... Unpacking librtmp1:mips (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libgpg-error0:mips. 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Preparing to unpack .../67-libdeflate-dev_1.2-1_mips.deb ... Unpacking libdeflate-dev:mips (1.2-1) ... Selecting previously unselected package libgomp1:mips. Preparing to unpack .../68-libgomp1_8.3.0-6_mips.deb ... Unpacking libgomp1:mips (8.3.0-6) ... Selecting previously unselected package libgcc-8-dev:mips. Preparing to unpack .../69-libgcc-8-dev_8.3.0-6_mips.deb ... Unpacking libgcc-8-dev:mips (8.3.0-6) ... Selecting previously unselected package liblzma5:mips. Preparing to unpack .../70-liblzma5_5.2.4-1_mips.deb ... Unpacking liblzma5:mips (5.2.4-1) ... Selecting previously unselected package liblzma-dev:mips. Preparing to unpack .../71-liblzma-dev_5.2.4-1_mips.deb ... Unpacking liblzma-dev:mips (5.2.4-1) ... Selecting previously unselected package libssl-dev:mips. Preparing to unpack .../72-libssl-dev_1.1.1b-1_mips.deb ... Unpacking libssl-dev:mips (1.1.1b-1) ... Selecting previously unselected package libstdc++6:mips. Preparing to unpack .../73-libstdc++6_8.3.0-6_mips.deb ... Unpacking libstdc++6:mips (8.3.0-6) ... Selecting previously unselected package libstdc++-8-dev:mips. Preparing to unpack .../74-libstdc++-8-dev_8.3.0-6_mips.deb ... Unpacking libstdc++-8-dev:mips (8.3.0-6) ... Selecting previously unselected package zlib1g-dev:mips. Preparing to unpack .../75-zlib1g-dev_1%3a1.2.11.dfsg-1_mips.deb ... Unpacking zlib1g-dev:mips (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-htslib-dummy:mips. Preparing to unpack .../76-sbuild-build-depends-htslib-dummy_0.invalid.0_mips.deb ... Unpacking sbuild-build-depends-htslib-dummy:mips (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:mips (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libldap-common (2.4.47+dfsg-3) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mips (8.3.0-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mips (2.28-8) ... Setting up libtasn1-6:mips (4.13-3) ... Setting up libc6-dev:mips (2.28-8) ... Setting up libbz2-1.0:mips (1.0.6-9) ... Setting up libdb5.3:mips (5.3.28+dfsg1-0.6) ... Setting up libbz2-dev:mips (1.0.6-9) ... Setting up libkeyutils1:mips (1.6-6) ... Setting up liblzma5:mips (5.2.4-1) ... Setting up libgpg-error0:mips (1.35-1) ... Setting up libgcc1:mips (1:8.3.0-6) ... Setting up libssl1.1:mips (1.1.1b-1) ... Setting up libnghttp2-14:mips (1.37.0-1) ... Setting up libunistring2:mips (0.9.10-1) ... Setting up libdeflate0:mips (1.2-1) ... Setting up libgcrypt20:mips (1.8.4-5) ... Setting up zlib1g:mips (1:1.2.11.dfsg-1) ... Setting up libffi6:mips (3.2.1-9) ... Setting up libidn2-0:mips (2.0.5-1) ... Setting up libcom-err2:mips (1.45.0-1) ... Setting up libgomp1:mips (8.3.0-6) ... Setting up libkrb5support0:mips (1.17-2) ... Setting up libsasl2-modules-db:mips (2.1.27+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up libgmp10:mips (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:mips (0.23.15-2) ... Setting up libssl-dev:mips (1.1.1b-1) ... Setting up libatomic1:mips (8.3.0-6) ... Setting up libk5crypto3:mips (1.17-2) ... Setting up libnettle6:mips (3.4.1-1) ... Setting up libgcc-8-dev:mips (8.3.0-6) ... Setting up libsasl2-2:mips (2.1.27+dfsg-1) ... Setting up liblzma-dev:mips (5.2.4-1) ... Setting up zlib1g-dev:mips (1:1.2.11.dfsg-1) ... Setting up libssh2-1:mips (1.8.0-2.1) ... Setting up libkrb5-3:mips (1.17-2) ... Setting up libdeflate-dev:mips (1.2-1) ... Setting up libstdc++6:mips (8.3.0-6) ... Setting up libstdc++-8-dev:mips (8.3.0-6) ... Setting up libpsl5:mips (0.20.2-2) ... Setting up libhogweed4:mips (3.4.1-1) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up libgnutls30:mips (3.6.7-2) ... Setting up librtmp1:mips (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:mips (1.17-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libldap-2.4-2:mips (2.4.47+dfsg-3) ... Setting up libcurl3-gnutls:mips (7.64.0-2) ... Setting up libcurl4-gnutls-dev:mips (7.64.0-2) ... Setting up sbuild-build-depends-htslib-dummy:mips (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-6 gcc-8_8.3.0-6 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-mips-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-mips-cross_8.3.0-4cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-3 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mips-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-6 cpp-8-mips-linux-gnu_8.3.0-4cross1 cpp-mips-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-mips_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-exec_0.23.1 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-6 g++-8-mips-linux-gnu_8.3.0-4cross1 g++-mips-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-6 gcc-8-base_8.3.0-6 gcc-8-cross-base_8.3.0-4cross1 gcc-8-mips-linux-gnu_8.3.0-4cross1 gcc-8-mips-linux-gnu-base_8.3.0-4cross1 gcc-mips-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6 libatomic1_8.3.0-6 libatomic1-mips-cross_8.3.0-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-mips-cross_2.28-7cross1 libc6-mips-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-2 libcurl4-gnutls-dev_7.64.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdeflate-dev_1.2-1 libdeflate0_1.2-1 libdpkg-perl_1.19.6 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-6 libgcc-8-dev-mips-cross_8.3.0-4cross1 libgcc1_1:8.3.0-6 libgcc1-mips-cross_1:8.3.0-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-2 libgomp1_8.3.0-6 libgomp1-mips-cross_8.3.0-4cross1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-2 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-6 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-6 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-6 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_8.3.0-6 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1b-1 libssl1.1_1.1.1b-1 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-mips-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-mips-cross_8.3.0-4cross1 libsystemd0_241-3 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-6 libubsan1_8.3.0-6 libuchardet0_0.0.6-3 libudev1_241-3 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-mips-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-htslib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 16 13:40:59 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.9-10.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.9.orig.tar.gz dpkg-source: info: unpacking htslib_1.9-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-79f7b163-849b-4a6a-91ea-65473b30a03d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.9-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type mips-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips dpkg-source: info: using options from htslib-1.9/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/sam test/test_bgzf test/test_realn test/test-regidx test/test_view test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/test-bcf-translate test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts2.substvars debian/libhts-dev.substvars debian/libhts-private-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts2/ debian/tmp/ debian/libhts-dev/ debian/libhts-private-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup autoconf dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips-linux-gnu --libexecdir=\${prefix}/lib/mips-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips-linux-gnu --enable-libcurl --enable-gcs --enable-s3 configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.mips checking for mips-linux-gnu-gcc... mips-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mips-linux-gnu-gcc accepts -g... yes checking for mips-linux-gnu-gcc option to accept ISO C89... none needed checking for mips-linux-gnu-ranlib... mips-linux-gnu-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for _LARGEFILE_SOURCE value needed for large files... no checking shared library type for mips-linux-gnu... plain .so checking how to run the C preprocessor... mips-linux-gnu-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... no checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.9-10" \ libdir=/usr/lib/mips-linux-gnu make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto" PACKAGE_VERSION=1.9-10 libdir=/usr/lib/mips-linux-gnu make[2]: Entering directory '/<>' mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.9-10"' > version.h mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/files.o cram/files.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/sam_header.o cram/sam_header.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_libcurl.o hfile_libcurl.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_gcs.o hfile_gcs.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_s3.o hfile_s3.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o mips-linux-gnu-ranlib libhts.a mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o knetfile.pico knetfile.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kstring.pico kstring.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o bgzf.pico bgzf.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o errmod.pico errmod.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o faidx.pico faidx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile.pico hfile.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_net.pico hfile_net.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts_os.pico hts_os.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o md5.pico md5.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o multipart.pico multipart.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o probaln.pico probaln.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o realn.pico realn.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o regidx.pico regidx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o sam.pico sam.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf_sweep.pico vcf_sweep.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o tbx.pico tbx.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o textutils.pico textutils.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o thread_pool.pico thread_pool.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcf.pico vcf.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o vcfutils.pico vcfutils.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_external.pico cram/cram_external.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_index.pico cram/cram_index.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_io.pico cram/cram_io.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_samtools.pico cram/cram_samtools.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/files.pico cram/files.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/rANS_static.pico cram/rANS_static.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/sam_header.pico cram/sam_header.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c mips-linux-gnu-gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ln -sf libhts.so libhts.so.2 mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o htsfile htsfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o tabix tabix.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/hts_endian test/hts_endian.o -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/hfile test/hfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/sam test/sam.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_realn test/test_realn.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_view test/test_view.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/libhts2.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts2/ debian/libhts2/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' echo '#define HTS_VERSION "1.9"' > version.h mips-linux-gnu-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o mips-linux-gnu-ranlib libhts.a mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o htsfile htsfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o tabix tabix.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/mips-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/lib/mips-linux-gnu/pkgconfig if test -n ""; then mkdir -p -m 755 /<>/debian/tmp; fi mips-linux-gnu-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c mips-linux-gnu-gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ln -sf libhts.so libhts.so.2 install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/mips-linux-gnu/libhts.so.1.9 ln -sf libhts.so.1.9 /<>/debian/tmp/usr/lib/mips-linux-gnu/libhts.so ln -sf libhts.so.1.9 /<>/debian/tmp/usr/lib/mips-linux-gnu/libhts.so.2 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/mips-linux-gnu#g;s#@-PACKAGE_VERSION@#1.9#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/mips-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/mips-linux-gnu/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n ""; then install -p /<>/debian/tmp; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/mips-linux-gnu/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts2/usr/lib/mips-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/mips-linux-gnu/libhts.so.1.9 debian/tmp/usr/lib/mips-linux-gnu/libhts.so.2 debian/libhts2/usr/lib/mips-linux-gnu/ install -d debian/.debhelper/generated/libhts2 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/mips-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/mips-linux-gnu/libhts.a debian/tmp/usr/lib/mips-linux-gnu/libhts.so debian/libhts-dev/usr/lib/mips-linux-gnu/ install -d debian/libhts-dev/usr/lib/mips-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/mips-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/mips-linux-gnu/pkgconfig/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/libhts-private-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix dh_installdocs -a install -d debian/libhts2/usr/share/doc/libhts2 install -p -m0644 debian/copyright debian/libhts2/usr/share/doc/libhts2/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev chown -R 0:0 debian/libhts-dev/usr/share/doc chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts2/usr/share/doc/libhts2/changelog.Debian install -p -m0644 NEWS debian/libhts2/usr/share/doc/libhts2/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/vcf.5 > debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new mv debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new debian/libhts-dev/usr/share/man/man5/vcf.5 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/sam.5 > debian/libhts-dev/usr/share/man/man5/sam.5.dh-new mv debian/libhts-dev/usr/share/man/man5/sam.5.dh-new debian/libhts-dev/usr/share/man/man5/sam.5 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/faidx.5 > debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new mv debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new debian/libhts-dev/usr/share/man/man5/faidx.5 man -l --recode UTF-8 ./debian/tabix/usr/share/man/man1/tabix.1 > debian/tabix/usr/share/man/man1/tabix.1.dh-new mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 man -l --recode UTF-8 ./debian/tabix/usr/share/man/man1/htsfile.1 > debian/tabix/usr/share/man/man1/htsfile.1.dh-new mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/libhts-dev/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/faidx.5 debian/tabix/usr/share/man/man1/tabix.1 debian/tabix/usr/share/man/man1/htsfile.1 dh_perl -a dh_link -a rm -f debian/libhts2/usr/lib/mips-linux-gnu/libhts.so.2 ln -s libhts.so.1.9 debian/libhts2/usr/lib/mips-linux-gnu/libhts.so.2 rm -f debian/libhts-dev/usr/lib/mips-linux-gnu/libhts.so ln -s libhts.so.1.9 debian/libhts-dev/usr/lib/mips-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts2 chmod a-x usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian gzip -9nf usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 gzip -9nf usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' dh_fixperms -a find debian/libhts2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts2/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/07 mips-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/libhts2/usr/lib/mips-linux-gnu/libhts.so.1.9 debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/07/f9658aca7203c022cf44965a79d38b7ae3cc35.debug chmod 0644 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/07/f9658aca7203c022cf44965a79d38b7ae3cc35.debug chown 0:0 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/07/f9658aca7203c022cf44965a79d38b7ae3cc35.debug mips-linux-gnu-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts2/usr/lib/mips-linux-gnu/libhts.so.1.9 mips-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/07/f9658aca7203c022cf44965a79d38b7ae3cc35.debug debian/libhts2/usr/lib/mips-linux-gnu/libhts.so.1.9 install -d debian/.debhelper/libhts2/dbgsym-root/usr/share/doc ln -s libhts2 debian/.debhelper/libhts2/dbgsym-root/usr/share/doc/libhts2-dbgsym mips-linux-gnu-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhts-dev/usr/lib/mips-linux-gnu/libhts.a mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/kfunc.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/knetfile.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/kstring.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/bcf_sr_sort.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/bgzf.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/errmod.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/faidx.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hfile.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hfile_net.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hts.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hts_os.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/md5.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/multipart.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/probaln.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/realn.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/regidx.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/sam.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/synced_bcf_reader.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/vcf_sweep.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/tbx.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/textutils.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/thread_pool.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/vcf.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/vcfutils.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_codecs.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_decode.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_encode.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_external.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_index.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_io.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_samtools.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/cram_stats.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/files.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/mFILE.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/open_trace_file.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/pooled_alloc.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/rANS_static.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/sam_header.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/string_alloc.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hfile_libcurl.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hfile_gcs.o: plugin needed to handle lto object mips-linux-gnu-strip: debian/libhts-dev/usr/lib/mips-linux-gnu/stzAvZT1/hfile_s3.o: plugin needed to handle lto object install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2a mips-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2a/7b095e49b72a21315bfceb9eae6b88a808814e.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2a/7b095e49b72a21315bfceb9eae6b88a808814e.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2a/7b095e49b72a21315bfceb9eae6b88a808814e.debug mips-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix mips-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/2a/7b095e49b72a21315bfceb9eae6b88a808814e.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/74 mips-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/74/a68b1218ff083d2a3270c42eb65a305d36f604.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/74/a68b1218ff083d2a3270c42eb65a305d36f604.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/74/a68b1218ff083d2a3270c42eb65a305d36f604.debug mips-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile mips-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/74/a68b1218ff083d2a3270c42eb65a305d36f604.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83 mips-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/838729011ce2379d86327741e52ad082b4466d.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/838729011ce2379d86327741e52ad082b4466d.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/838729011ce2379d86327741e52ad082b4466d.debug mips-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip mips-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/83/838729011ce2379d86327741e52ad082b4466d.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym dh_makeshlibs -a rm -f debian/libhts2/DEBIAN/shlibs install -d debian/libhts2/DEBIAN echo "libhts 2 libhts2" >> debian/libhts2/DEBIAN/shlibs chmod 0644 -- debian/libhts2/DEBIAN/shlibs chown 0:0 -- debian/libhts2/DEBIAN/shlibs dpkg-gensymbols -plibhts2 -Idebian/libhts2.symbols -Pdebian/libhts2 -edebian/libhts2/usr/lib/mips-linux-gnu/libhts.so.1.9 dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libhts2/DEBIAN/symbols doesn't match completely debian/libhts2.symbols --- debian/libhts2.symbols (libhts2_1.9-10_mips) +++ dpkg-gensymbolsBuRNzK 2019-04-15 08:38:39.175420997 +0000 @@ -627,7 +627,7 @@ mfflush@Base 1.0 mfgetc@Base 1.0 mfgets@Base 1.0 - mfmmap@Base 1.3 +#MISSING: 1.9-10# mfmmap@Base 1.3 mfopen@Base 1.0 mfread@Base 1.0 mfrecreate@Base 1.0 mv debian/.debhelper/generated/libhts2/triggers.new debian/.debhelper/generated/libhts2/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:18: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-04-15T08:38:39Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 43388 Build-Time: 277 Distribution: unstable Fail-Stage: build Foreign Architectures: mips Host Architecture: mips Install-Time: 23 Job: htslib_1.9-10 Machine Architecture: amd64 Package: htslib Package-Time: 310 Source-Version: 1.9-10 Space: 43388 Status: attempted Version: 1.9-10 -------------------------------------------------------------------------------- Finished at 2019-04-15T08:38:39Z Build needed 00:05:10, 43388k disk space