sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | htslib 1.9-11 (mips64el) Tue, 14 May 2019 23:38:58 +0000 | +==============================================================================+ Package: htslib Version: 1.9-11 Source Version: 1.9-11 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9b62dbe4-30ac-4599-9e35-83e4ed67a238' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-14-0810.46.pdiff [1888 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-14-1411.04.pdiff [457 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-14-2011.30.pdiff [16.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-14-2011.30.pdiff [16.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-14-0810.46.pdiff [4470 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-14-1411.04.pdiff [373 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-14-2011.30.pdiff [2720 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-14-2011.30.pdiff [2720 B] Get:10 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8026 kB] Fetched 8355 kB in 2s (4311 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gpgv 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 587 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 gpgv amd64 2.2.13-2 [587 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 587 kB in 0s (32.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11942 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.13-2_amd64.deb ... Unpacking gpgv (2.2.13-2) over (2.2.13-1) ... Setting up gpgv (2.2.13-2) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'htslib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/htslib.git Please use: git clone https://salsa.debian.org/med-team/htslib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1303 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-11 (dsc) [2882 B] Get:2 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-11 (tar) [1286 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main htslib 1.9-11 (diff) [14.9 kB] Fetched 1303 kB in 0s (34.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/htslib-W66QUd/htslib-1.9' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-W66QUd' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RyPVqF/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-RyPVqF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RyPVqF/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-RyPVqF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RyPVqF/apt_archive ./ Sources [364 B] Get:5 copy:/<>/resolver-RyPVqF/apt_archive ./ Packages [455 B] Fetched 1776 B in 0s (95.9 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-8-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-8-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-8-cross-base gcc-8-mips64el-linux-gnuabi64 gcc-8-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mips64el-linux-gnuabi64 gcc-8-doc libstdc++6-8-dbg-mips64el-cross gcc-8-multilib-mips64el-linux-gnuabi64 libgcc1-dbg-mips64el-cross libgomp1-dbg-mips64el-cross libitm1-dbg-mips64el-cross libatomic1-dbg-mips64el-cross libasan5-dbg-mips64el-cross liblsan0-dbg-mips64el-cross libtsan0-dbg-mips64el-cross libubsan1-dbg-mips64el-cross libmpx2-dbg-mips64el-cross libquadmath0-dbg-mips64el-cross manpages-dev autoconf automake libtool flex bison gdb-mips64el-linux-gnuabi64 gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-8-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-8-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-8-cross-base gcc-8-mips64el-linux-gnuabi64 gcc-8-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sbuild-build-depends-core-dummy:mips64el sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.4 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RyPVqF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.31.1-16 [2489 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips64el-linux-gnuabi64-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mips64el-linux-gnuabi64 amd64 8.3.0-7cross1 [6277 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.28-10cross2 [1355 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:8.3.0-7cross1 [68.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 8.3.0-7cross1 [66.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 8.3.0-7cross1 [7384 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mips64el-cross all 8.3.0-7cross1 [235 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips64el-linux-gnuabi64 amd64 8.3.0-7cross1 [6691 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [1472 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 8.3.0-7cross1 [310 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 4.19.28-2cross2 [1240 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.28-10cross2 [2512 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mips64el-cross all 8.3.0-7cross1 [1559 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mips64el-linux-gnuabi64 amd64 8.3.0-7cross1 [6850 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [1192 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.6 [6584 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.4 MB in 1s (79.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11942 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mips64el-cross (2.28-10cross2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.31.1-16) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-2) ... Setting up gcc-8-mips64el-linux-gnuabi64-base:amd64 (8.3.0-7cross1) ... Setting up sensible-utils (0.0.12) ... Setting up linux-libc-dev-mips64el-cross (4.19.28-2cross2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-mips64el-cross (8.3.0-7cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-mips64el-linux-gnuabi64 (8.3.0-7cross1) ... Setting up libatomic1-mips64el-cross (8.3.0-7cross1) ... Setting up libgcc1-mips64el-cross (1:8.3.0-7cross1) ... Setting up libc6-dev-mips64el-cross (2.28-10cross2) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-mips64el-cross (8.3.0-7cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up libgcc-8-dev-mips64el-cross (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-mips64el-cross (8.3.0-7cross1) ... Setting up gcc-8-mips64el-linux-gnuabi64 (8.3.0-7cross1) ... Setting up g++-8-mips64el-linux-gnuabi64 (8.3.0-7cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-mips64el (12.6) ... Setting up sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-RyPVqF/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-RyPVqF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RyPVqF/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RyPVqF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RyPVqF/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-RyPVqF/apt_archive ./ Packages [571 B] Fetched 2018 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips64el 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RyPVqF/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips64el. (Reading database ... 15114 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), dh-exec, libbz2-dev, libcurl4-gnutls-dev, liblzma-dev, libssl-dev, zlib1g-dev, libdeflate-dev dpkg-deb: building package 'sbuild-build-depends-htslib-dummy' in '/<>/resolver-RyPVqF/apt_archive/sbuild-build-depends-htslib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-htslib-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-RyPVqF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RyPVqF/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RyPVqF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RyPVqF/apt_archive ./ Sources [680 B] Get:5 copy:/<>/resolver-RyPVqF/apt_archive ./ Packages [766 B] Fetched 2409 B in 0s (130 kB/s) Reading package lists... Reading package lists... Install htslib build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdeflate-dev:mips64el libdeflate0:mips64el libelf1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-8-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed4:mips64el libidn2-0:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libnettle6:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl-dev:mips64el libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++6:mips64el libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el linux-libc-dev:mips64el m4 man-db po-debconf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el manpages-dev:mips64el libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn11-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el libssh2-1-dev:mips64el pkg-config:mips64el rng-tools:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libssl-doc:mips64el libstdc++-8-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el krb5-locales:mips64el libgpm2 publicsuffix:mips64el libsasl2-modules:mips64el libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism dwz gcc-8-base:mips64el gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdeflate-dev:mips64el libdeflate0:mips64el libelf1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-8-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2:mips64el libhogweed4:mips64el libidn2-0:mips64el libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libnettle6:mips64el libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libpsl5:mips64el librtmp1:mips64el libsasl2-2:mips64el libsasl2-modules-db:mips64el libsigsegv2 libssh2-1:mips64el libssl-dev:mips64el libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++6:mips64el libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el linux-libc-dev:mips64el m4 man-db po-debconf sbuild-build-depends-htslib-dummy:mips64el zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 27.7 MB of archives. After this operation, 123 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RyPVqF/apt_archive ./ sbuild-build-depends-htslib-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-8-base mips64el 8.3.0-7 [191 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc1 mips64el 1:8.3.0-7 [68.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.28-10 [2562 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 8.3.0-7 [7432 B] Get:34 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.6-9 [46.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 4.19.37-1 [1178 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.28-10 [2513 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-dev mips64el 1.0.6-9 [33.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.1-1 [69.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.1.2+dfsg-4 [237 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle6 mips64el 3.4.1-1 [227 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed4 mips64el 3.4.1-1 [134 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-1 [376 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.0.5-1 [75.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main mips64el libffi6 mips64el 3.2.1-9 [21.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.15-2 [257 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.13-3 [49.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.7-2 [978 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6-6 [14.5 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.17-2 [63.5 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.17-2 [126 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1b-2 [1133 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.17-2 [333 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.17-2 [143 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-1 [68.2 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-1 [102 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.47+dfsg-3 [203 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.37.0-1 [78.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.20.2-2 [53.5 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-1 [91.1 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2 [55.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.35-1 [67.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.4-5 [496 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.64.0-3 [305 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl4-gnutls-dev mips64el 7.64.0-3 [429 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.2-1 [49.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate-dev mips64el 1.2-1 [42.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 8.3.0-7 [67.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-8-dev mips64el 8.3.0-7 [234 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1 [151 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1 [214 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mips64el libssl-dev mips64el 1.1.1b-2 [1609 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 8.3.0-7 [348 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-8-dev mips64el 8.3.0-7 [1573 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-1 [215 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.7 MB in 1s (43.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15114 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. 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Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mips64el (2.28-10) ... Setting up libtasn1-6:mips64el (4.13-3) ... Setting up libc6-dev:mips64el (2.28-10) ... Setting up libbz2-1.0:mips64el (1.0.6-9) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... 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Setting up libatomic1:mips64el (8.3.0-7) ... Setting up libk5crypto3:mips64el (1.17-2) ... Setting up libnettle6:mips64el (3.4.1-1) ... Setting up libgcc-8-dev:mips64el (8.3.0-7) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-1) ... Setting up liblzma-dev:mips64el (5.2.4-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-1) ... Setting up libssh2-1:mips64el (1.8.0-2.1) ... Setting up libkrb5-3:mips64el (1.17-2) ... Setting up libdeflate-dev:mips64el (1.2-1) ... Setting up libstdc++6:mips64el (8.3.0-7) ... Setting up libstdc++-8-dev:mips64el (8.3.0-7) ... Setting up libpsl5:mips64el (0.20.2-2) ... Setting up libhogweed4:mips64el (3.4.1-1) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up libgnutls30:mips64el (3.6.7-2) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:mips64el (1.17-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libldap-2.4-2:mips64el (2.4.47+dfsg-3) ... Setting up libcurl3-gnutls:mips64el (7.64.0-3) ... Setting up libcurl4-gnutls-dev:mips64el (7.64.0-3) ... Setting up sbuild-build-depends-htslib-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mips64el-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mips64el-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-1 Package versions: adduser_3.118 apt_1.8.1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mips64el-linux-gnuabi64_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-mips64el-linux-gnuabi64_8.3.0-7cross1 cpp-mips64el-linux-gnuabi64_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-mips64el_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-exec_0.23.1 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.1-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-mips64el-linux-gnuabi64_8.3.0-7cross1 g++-mips64el-linux-gnuabi64_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-8-mips64el-linux-gnuabi64_8.3.0-7cross1 gcc-8-mips64el-linux-gnuabi64-base_8.3.0-7cross1 gcc-mips64el-linux-gnuabi64_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.1 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libatomic1_8.3.0-7 libatomic1-mips64el-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mips64el-cross_2.28-10cross2 libc6-mips64el-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.1-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-3 libcurl4-gnutls-dev_7.64.0-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdeflate-dev_1.2-1 libdeflate0_1.2-1 libdpkg-perl_1.19.6 libelf1_0.176-1 libext2fs2_1.45.1-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-mips64el-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-mips64el-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-2 libgomp1_8.3.0-7 libgomp1-mips64el-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-2 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpsl5_0.20.2-2 libquadmath0_8.3.0-7 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.1-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1b-2 libssl1.1_1.1.1b-2 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mips64el-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mips64el-cross_8.3.0-7cross1 libsystemd0_241-3 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libuchardet0_0.0.6-3 libudev1_241-3 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-1 linux-libc-dev-mips64el-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-htslib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Apr 24 07:02:47 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.9-11.dsc dpkg-source: info: extracting htslib in /<> dpkg-source: info: unpacking htslib_1.9.orig.tar.gz dpkg-source: info: unpacking htslib_1.9-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_git_version dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying fPIC.patch dpkg-source: info: applying testShebang.patch dpkg-source: info: applying fix_float_precision Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9b62dbe4-30ac-4599-9e35-83e4ed67a238 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.9-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from htslib-1.9/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md)$ fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f libhts.so libhts.so.* rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/sam test/test_bgzf test/test_realn test/test-regidx test/test_view test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/test-bcf-translate test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk rm -rf autom4te.cache make[2]: Leaving directory '/<>' rm -rf test_backup/ make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhts2.substvars debian/libhts-dev.substvars debian/libhts-private-dev.substvars debian/htslib-test.substvars debian/tabix.substvars debian/files rm -fr -- debian/libhts2/ debian/tmp/ debian/libhts-dev/ debian/libhts-private-dev/ debian/htslib-test/ debian/tabix/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' # create clean copy of test dir cp -a test test_backup autoconf dh_auto_configure -- --enable-libcurl --enable-gcs --enable-s3 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --libexecdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-libcurl --enable-gcs --enable-s3 configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to accept ISO C89... none needed checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking for grep that handles long lines and -e... /bin/grep checking for C compiler warning flags... -Wall checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking shared library type for mips64el-linux-gnuabi64... plain .so checking how to run the C preprocessor... mips64el-linux-gnuabi64-gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... no checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for libdeflate.h... yes checking for libdeflate_deflate_compress in -ldeflate... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/<>' rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ PACKAGE_VERSION="1.9-11" \ libdir=/usr/lib/mips64el-linux-gnuabi64 make -j1 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto" PACKAGE_VERSION=1.9-11 libdir=/usr/lib/mips64el-linux-gnuabi64 make[2]: Entering directory '/<>' mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.9-11"' > version.h mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts_os.o hts_os.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. 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-D_FORTIFY_SOURCE=2 -c -o hfile_s3.o hfile_s3.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o mips64el-linux-gnuabi64-ranlib libhts.a mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o kfunc.pico kfunc.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/files.pico cram/files.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/mFILE.pico cram/mFILE.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/rANS_static.pico cram/rANS_static.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/sam_header.pico cram/sam_header.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_gcs.pico hfile_gcs.c mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hfile_s3.pico hfile_s3.c mips64el-linux-gnuabi64-gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ln -sf libhts.so libhts.so.2 mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o htsfile htsfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o tabix tabix.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/hts_endian test/hts_endian.o -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/hfile test/hfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/sam test/sam.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_realn.o test/test_realn.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_realn test/test_realn.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test_view test/test_view.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -flto -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-translate.o test/test-bcf-translate.c mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -Wl,-flto -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/libhts2.substvars debian/libhts-dev.substvars debian/tabix.substvars rm -fr -- debian/.debhelper/generated/libhts2/ debian/libhts2/ debian/tmp/ debian/.debhelper/generated/libhts-dev/ debian/libhts-dev/ debian/.debhelper/generated/tabix/ debian/tabix/ rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- prefix=/usr install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' echo '#define HTS_VERSION "1.9"' > version.h mips64el-linux-gnuabi64-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -I. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o hfile_gcs.o hfile_s3.o mips64el-linux-gnuabi64-ranlib libhts.a mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o bgzip bgzip.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o htsfile htsfile.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mips64el-linux-gnuabi64-gcc -Wl,-z,relro -Wl,-z,now -Wl,-flto -o tabix tabix.o libhts.a -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig if test -n ""; then mkdir -p -m 755 /<>/debian/tmp; fi mips64el-linux-gnuabi64-gcc -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -flto -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -c -o hts.pico hts.c mips64el-linux-gnuabi64-gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,-z,now -Wl,-flto -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread ln -sf libhts.so libhts.so.2 install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 ln -sf libhts.so.1.9 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -sf libhts.so.1.9 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.2 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/mips64el-linux-gnuabi64#g;s#@-PACKAGE_VERSION@#1.9#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n ""; then install -p /<>/debian/tmp; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a install -p -m 644 bgzip.1 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 make[2]: Leaving directory '/<>' # restore clean copy of test dir before dh_install is run # This should not be done earlier since dh_auto_install contains some unconditional removals rm -f -r test mv test_backup test make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts2/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so.2 debian/libhts2/usr/lib/mips64el-linux-gnuabi64/ install -d debian/.debhelper/generated/libhts2 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64 cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.a debian/tmp/usr/lib/mips64el-linux-gnuabi64/libhts.so debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/ install -d debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/mips64el-linux-gnuabi64/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/tmp/usr/share/man/man5/sam.5 debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/libhts-private-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./bgzip ./htsfile ./tabix debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix dh_installdocs -a install -d debian/libhts2/usr/share/doc/libhts2 install -p -m0644 debian/copyright debian/libhts2/usr/share/doc/libhts2/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./debian/README.test debian/libhts-dev/usr/share/doc/libhts-dev cp --reflink=auto -a ./README debian/libhts-dev/usr/share/doc/libhts-dev chown -R 0:0 debian/libhts-dev/usr/share/doc chmod -R u\+rw,go=rX debian/libhts-dev/usr/share/doc install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright rm -f debian/libhts-dev.debhelper.log debian/libhts2.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts2/usr/share/doc/libhts2/changelog.Debian install -p -m0644 NEWS debian/libhts2/usr/share/doc/libhts2/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a install -d debian/tabix/usr/share/man/man1/ install -p -m0644 ./htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 install -p -m0644 ./tabix.1 debian/tabix/usr/share/man/man1/tabix.1 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/vcf.5 > debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new mv debian/libhts-dev/usr/share/man/man5/vcf.5.dh-new debian/libhts-dev/usr/share/man/man5/vcf.5 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/sam.5 > debian/libhts-dev/usr/share/man/man5/sam.5.dh-new mv debian/libhts-dev/usr/share/man/man5/sam.5.dh-new debian/libhts-dev/usr/share/man/man5/sam.5 man -l --recode UTF-8 ./debian/libhts-dev/usr/share/man/man5/faidx.5 > debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new mv debian/libhts-dev/usr/share/man/man5/faidx.5.dh-new debian/libhts-dev/usr/share/man/man5/faidx.5 man -l --recode UTF-8 ./debian/tabix/usr/share/man/man1/tabix.1 > debian/tabix/usr/share/man/man1/tabix.1.dh-new mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 man -l --recode UTF-8 ./debian/tabix/usr/share/man/man1/htsfile.1 > debian/tabix/usr/share/man/man1/htsfile.1.dh-new mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/libhts-dev/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/faidx.5 debian/tabix/usr/share/man/man1/tabix.1 debian/tabix/usr/share/man/man1/htsfile.1 dh_perl -a dh_link -a rm -f debian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.2 ln -s libhts.so.1.9 debian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.2 rm -f debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so ln -s libhts.so.1.9 debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a dh_compress -a cd debian/libhts2 chmod a-x usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian gzip -9nf usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 gzip -9nf usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' dh_fixperms -a find debian/libhts2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts2/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/ce mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/ce/9d9ddfcc47c526d46963a4fad0b8152ad6d9c5.debug chmod 0644 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/ce/9d9ddfcc47c526d46963a4fad0b8152ad6d9c5.debug chown 0:0 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/ce/9d9ddfcc47c526d46963a4fad0b8152ad6d9c5.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/ce/9d9ddfcc47c526d46963a4fad0b8152ad6d9c5.debug debian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 install -d debian/.debhelper/libhts2/dbgsym-root/usr/share/doc ln -s libhts2 debian/.debhelper/libhts2/dbgsym-root/usr/share/doc/libhts2-dbgsym mips64el-linux-gnuabi64-strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/libhts.a mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/kfunc.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/knetfile.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/kstring.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/bcf_sr_sort.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/bgzf.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/errmod.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/faidx.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hfile.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hfile_net.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hts.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hts_os.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/md5.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/multipart.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/probaln.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/realn.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/regidx.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/sam.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/synced_bcf_reader.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/vcf_sweep.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/tbx.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/textutils.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/thread_pool.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/vcf.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/vcfutils.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_codecs.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_decode.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_encode.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_external.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_index.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_io.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_samtools.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/cram_stats.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/files.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/mFILE.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/open_trace_file.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/pooled_alloc.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/rANS_static.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/sam_header.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/string_alloc.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hfile_libcurl.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hfile_gcs.o: plugin needed to handle lto object mips64el-linux-gnuabi64-strip: debian/libhts-dev/usr/lib/mips64el-linux-gnuabi64/stFNhUbo/hfile_s3.o: plugin needed to handle lto object install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/68 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/68/1f939a7ec88cba19b3e008678334f56cd2331a.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/68/1f939a7ec88cba19b3e008678334f56cd2331a.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/68/1f939a7ec88cba19b3e008678334f56cd2331a.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/68/1f939a7ec88cba19b3e008678334f56cd2331a.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/58 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/58/b4ac1a7004416e8b801e4373d32d1f1ff26294.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/58/b4ac1a7004416e8b801e4373d32d1f1ff26294.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/58/b4ac1a7004416e8b801e4373d32d1f1ff26294.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/58/b4ac1a7004416e8b801e4373d32d1f1ff26294.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b3 mips64el-linux-gnuabi64-objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b3/8d8f5599d58c2900b7602d9513c8769521e981.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b3/8d8f5599d58c2900b7602d9513c8769521e981.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b3/8d8f5599d58c2900b7602d9513c8769521e981.debug mips64el-linux-gnuabi64-strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip mips64el-linux-gnuabi64-objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b3/8d8f5599d58c2900b7602d9513c8769521e981.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym dh_makeshlibs -a rm -f debian/libhts2/DEBIAN/shlibs install -d debian/libhts2/DEBIAN echo "libhts 2 libhts2" >> debian/libhts2/DEBIAN/shlibs chmod 0644 -- debian/libhts2/DEBIAN/shlibs chown 0:0 -- debian/libhts2/DEBIAN/shlibs dpkg-gensymbols -plibhts2 -Idebian/libhts2.symbols -Pdebian/libhts2 -edebian/libhts2/usr/lib/mips64el-linux-gnuabi64/libhts.so.1.9 dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libhts2/DEBIAN/symbols doesn't match completely debian/libhts2.symbols --- debian/libhts2.symbols (libhts2_1.9-11_mips64el) +++ dpkg-gensymbolsaPLDNa 2019-05-14 23:44:24.460626810 +0000 @@ -627,7 +627,7 @@ mfflush@Base 1.0 mfgetc@Base 1.0 mfgets@Base 1.0 - mfmmap@Base 1.3 +#MISSING: 1.9-11# mfmmap@Base 1.3 mfopen@Base 1.0 mfread@Base 1.0 mfrecreate@Base 1.0 mv debian/.debhelper/generated/libhts2/triggers.new debian/.debhelper/generated/libhts2/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:18: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-05-14T23:44:24Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 46804 Build-Time: 288 Distribution: unstable Fail-Stage: build Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 27 Job: htslib_1.9-11 Machine Architecture: amd64 Package: htslib Package-Time: 326 Source-Version: 1.9-11 Space: 46804 Status: attempted Version: 1.9-11 -------------------------------------------------------------------------------- Finished at 2019-05-14T23:44:24Z Build needed 00:05:26, 46804k disk space