sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | hyphy 2.3.14+dfsg-2 (armel) Sat, 13 Jul 2019 00:40:42 +0000 | +==============================================================================+ Package: hyphy Version: 2.3.14+dfsg-2 Source Version: 2.3.14+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b4e2e8b8-7054-4725-9091-5cd6d6ee482d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-12-0816.00.pdiff [22.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-12-1419.37.pdiff [20.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-12-2018.22.pdiff [9993 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-12-2018.22.pdiff [9993 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-12-0816.00.pdiff [22.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-12-1419.37.pdiff [19.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-12-2018.22.pdiff [9365 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-12-2018.22.pdiff [9365 B] Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [8061 kB] Fetched 8370 kB in 2s (4337 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: findutils gpgv 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1286 kB of archives. After this operation, 43.0 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 findutils amd64 4.6.0+git+20190510-2 [687 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 gpgv amd64 2.2.17-1 [599 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1286 kB in 0s (21.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20190510-2_amd64.deb ... Unpacking findutils (4.6.0+git+20190510-2) over (4.6.0+git+20190209-2) ... Setting up findutils (4.6.0+git+20190510-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.17-1_amd64.deb ... Unpacking gpgv (2.2.17-1) over (2.2.13-2) ... Setting up gpgv (2.2.17-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hyphy' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hyphy.git Please use: git clone https://salsa.debian.org/med-team/hyphy.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4587 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main hyphy 2.3.14+dfsg-2 (dsc) [2162 B] Get:2 http://debian.oregonstate.edu/debian unstable/main hyphy 2.3.14+dfsg-2 (tar) [4575 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main hyphy 2.3.14+dfsg-2 (diff) [9624 B] Fetched 4587 kB in 0s (46.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hyphy-ITPOTC/hyphy-2.3.14+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hyphy-ITPOTC' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-NO2c26/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NO2c26/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NO2c26/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NO2c26/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NO2c26/apt_archive ./ Sources [359 B] Get:5 copy:/<>/resolver-NO2c26/apt_archive ./ Packages [450 B] Fetched 1766 B in 0s (88.0 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel dpkg-cross file g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabi libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.2 MB of archives. After this operation, 155 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NO2c26/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.32.51.20190707-1 [2902 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6548 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-10cross3 [1190 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.1.0-8cross1 [39.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.1.0-8cross1 [74.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.1.0-8cross1 [8936 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.1.0-8cross1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.1.0-8cross1 [375 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.1.0-8cross1 [110 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.3.0-19cross1 [602 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [6981 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.3.0-1 [1460 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-10cross3 [2183 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.3.0-19cross1 [1548 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.3.0-19cross1 [7128 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.2 MB in 1s (57.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11955 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../37-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../43-crossbuild-essential-armel_12.6_all.deb ... Unpacking crossbuild-essential-armel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armel. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-arm-linux-gnueabi (2.32.51.20190707-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-arm-linux-gnueabi-base:amd64 (8.3.0-19cross1) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up cpp-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (4.19.37-5cross3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-arm-linux-gnueabi (4:8.3.0-1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up libc6-armel-cross (2.28-10cross3) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-armel-cross (2.28-10cross3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgomp1-armel-cross (9.1.0-8cross1) ... Setting up libatomic1-armel-cross (9.1.0-8cross1) ... Setting up libgcc1-armel-cross (1:9.1.0-8cross1) ... Setting up libasan5-armel-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-armel-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libubsan1-armel-cross (9.1.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up libstdc++-8-dev-armel-cross (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-arm-linux-gnueabi (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-8-arm-linux-gnueabi (8.3.0-19cross1) ... Setting up g++-arm-linux-gnueabi (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.6) ... Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-NO2c26/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-NO2c26/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NO2c26/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NO2c26/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NO2c26/apt_archive ./ Sources [481 B] Get:5 copy:/<>/resolver-NO2c26/apt_archive ./ Packages [570 B] Fetched 2014 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-NO2c26/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armel. (Reading database ... 15006 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev, libssl-dev, libsqlite3-dev dpkg-deb: building package 'sbuild-build-depends-hyphy-dummy' in '/<>/resolver-NO2c26/apt_archive/sbuild-build-depends-hyphy-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-hyphy-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-NO2c26/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NO2c26/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NO2c26/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NO2c26/apt_archive ./ Sources [677 B] Get:5 copy:/<>/resolver-NO2c26/apt_archive ./ Packages [757 B] Fetched 2397 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install hyphy build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libarchive13 libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libedit2 libelf1 libevent-2.1-6:armel libevent-core-2.1-6:armel libevent-pthreads-2.1-6:armel libexpat1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgssapi-krb5-2 libgssapi-krb5-2:armel libhogweed4:armel libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63:armel libidn2-0:armel libjsoncpp1 libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel libldap-2.4-2 libldap-2.4-2:armel libldap-common libltdl-dev:armel libltdl7:armel liblzma5:armel libmonkey-patch-perl libncurses6 libnettle6:armel libnghttp2-14 libnghttp2-14:armel libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libp11-kit0:armel libpciaccess0:armel libpipeline1 libpmix2:armel libprocps7 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsigsegv2 libsqlite3-0:armel libsqlite3-dev:armel libssh2-1 libssh2-1:armel libssl-dev:armel libssl1.1 libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libsub-delete-perl libsub-identify-perl libsuper-perl libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel libuv1 libxml2:armel linux-libc-dev:armel lsb-base m4 man-db mpi-default-dev:armel ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client po-debconf procps zlib1g:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libcurl4-doc:armel libgnutls28-dev:armel libidn11-dev:armel libkrb5-dev:armel libldap2-dev:armel librtmp-dev:armel libssh2-1-dev:armel pkg-config:armel zlib1g-dev:armel rng-tools:armel gnutls-bin:armel krb5-doc krb5-user krb5-doc:armel krb5-user:armel libhwloc-contrib-plugins:armel libtool-doc:armel openmpi-doc:armel pciutils:armel sqlite3-doc:armel libssl-doc:armel libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd:armel gfortran:armel | fortran-compiler:armel keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:armel ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:armel krb5-locales krb5-locales:armel libgpm2 libcoarrays-openmpi-dev:armel publicsuffix publicsuffix:armel libsasl2-modules libsasl2-modules:armel libltdl-dev xauth libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gcc-9-base:armel gettext gettext-base groff-base ibverbs-providers:armel intltool-debian libarchive-zip-perl libarchive13 libasan5:armel libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcom-err2:armel libcroco3 libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libedit2 libelf1 libevent-2.1-6:armel libevent-core-2.1-6:armel libevent-pthreads-2.1-6:armel libexpat1 libffi6:armel libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel libgcrypt20:armel libgfortran5:armel libglib2.0-0 libgmp10:armel libgnutls30:armel libgomp1:armel libgpg-error0:armel libgssapi-krb5-2 libgssapi-krb5-2:armel libhogweed4:armel libhwloc-dev:armel libhwloc-plugins:armel libhwloc5:armel libibverbs-dev:armel libibverbs1:armel libicu63:armel libidn2-0:armel libjsoncpp1 libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel libldap-2.4-2 libldap-2.4-2:armel libldap-common libltdl-dev:armel libltdl7:armel liblzma5:armel libmonkey-patch-perl libncurses6 libnettle6:armel libnghttp2-14 libnghttp2-14:armel libnl-3-200:armel libnl-3-dev:armel libnl-route-3-200:armel libnl-route-3-dev:armel libopenmpi-dev:armel libopenmpi3:armel libp11-kit0:armel libpciaccess0:armel libpipeline1 libpmix2:armel libprocps7 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsigsegv2 libsqlite3-0:armel libsqlite3-dev:armel libssh2-1 libssh2-1:armel libssl-dev:armel libssl1.1 libssl1.1:armel libstdc++-8-dev:armel libstdc++6:armel libsub-delete-perl libsub-identify-perl libsuper-perl libtasn1-6:armel libtool libubsan1:armel libuchardet0 libunistring2:armel libuv1 libxml2:armel linux-libc-dev:armel lsb-base m4 man-db mpi-default-dev:armel ocl-icd-libopencl1:armel openmpi-bin:armel openmpi-common openssh-client po-debconf procps sbuild-build-depends-hyphy-dummy:armel zlib1g:armel 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 53.5 MB of archives. After this operation, 207 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NO2c26/apt_archive ./ sbuild-build-depends-hyphy-dummy 0.invalid.0 [912 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.1.0-8 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libedit2 amd64 3.1-20190324-1 [94.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-4 [64.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-4 [115 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-4 [367 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-4 [156 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 openssh-client amd64 1:8.0p1-3 [808 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.47+dfsg-3 [89.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3 [224 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.37.0-1 [83.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.64.0-4 [332 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.6-2 [106 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-delete-perl all 1.00002-2 [7516 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b1 [12.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libsuper-perl all 1.20141117-1 [10.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libmonkey-patch-perl all 0.03-2 [11.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.2.0-2 [20.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.2.0-2 [13.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190711-1 [80.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-3 [1259 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.3.0-19 [192 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.1.0-8 [39.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-10 [2399 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-200 armel 3.4.0-1 [56.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-200 armel 3.4.0-1 [135 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main armel libibverbs1 armel 24.0-2 [44.1 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main armel ibverbs-providers armel 24.0-2 [21.1 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.1.0-8 [347 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.1.0-8 [9088 B] Get:70 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.37-5 [1168 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-10 [2185 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.45.2-1 [68.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main armel libgmp10 armel 2:6.1.2+dfsg-4 [197 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main armel libnettle6 armel 3.4.1-1 [224 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main armel libhogweed4 armel 3.4.1-1 [129 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main armel libunistring2 armel 0.9.10-2 [364 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main armel libidn2-0 armel 2.0.5-1 [73.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main armel libffi6 armel 3.2.1-9 [18.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libp11-kit0 armel 0.23.15-2 [298 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libtasn1-6 armel 4.13-3 [46.5 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libgnutls30 armel 3.6.8-2 [1063 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6-6 [14.0 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.17-4 [61.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.17-4 [112 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1c-1 [1265 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.17-4 [318 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.17-4 [134 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libdb5.3 armel 5.3.28+dfsg1-0.6 [572 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-modules-db armel 2.1.27+dfsg-1 [67.4 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libsasl2-2 armel 2.1.27+dfsg-1 [98.4 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main armel libldap-2.4-2 armel 2.4.47+dfsg-3 [200 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libnghttp2-14 armel 1.37.0-1 [72.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libpsl5 armel 0.20.2-2 [52.5 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel zlib1g armel 1:1.2.11.dfsg-1 [86.5 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2 [54.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libgpg-error0 armel 1.36-2 [62.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libgcrypt20 armel 1.8.4-5 [482 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libssh2-1 armel 1.8.0-2.1 [126 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libcurl3-gnutls armel 7.64.0-4 [292 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libcurl4-gnutls-dev armel 7.64.0-4 [385 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libevent-2.1-6 armel 2.1.8-stable-4 [159 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libevent-core-2.1-6 armel 2.1.8-stable-4 [118 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libevent-pthreads-2.1-6 armel 2.1.8-stable-4 [47.6 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.1.0-8 [76.7 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.1.0-8 [414 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.1.0-8 [111 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.3.0-19 [601 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libgfortran5 armel 9.1.0-8 [245 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libltdl7 armel 2.4.6-10 [387 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libhwloc5 armel 1.11.12-3 [88.0 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libltdl-dev armel 2.4.6-10 [160 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-dev armel 1.11.12-3 [153 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libpciaccess0 armel 0.14-1 [50.9 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libicu63 armel 63.2-2 [7979 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel liblzma5 armel 5.2.4-1 [144 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libxml2 armel 2.9.4+dfsg1-7+b3 [572 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel ocl-icd-libopencl1 armel 2.2.12-2 [36.3 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libhwloc-plugins armel 1.11.12-3 [17.3 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libnl-3-dev armel 3.4.0-1 [96.9 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main armel libnl-route-3-dev armel 3.4.0-1 [158 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main armel libibverbs-dev armel 24.0-2 [157 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main armel libpmix2 armel 3.1.3-1 [436 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi3 armel 3.1.3-11 [1828 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main armel openmpi-bin armel 3.1.3-11 [200 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main armel libopenmpi-dev armel 3.1.3-11 [963 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main armel libsqlite3-0 armel 3.29.0-1 [559 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main armel libsqlite3-dev armel 3.29.0-1 [719 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main armel libssl-dev armel 1.1.1c-1 [1568 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.3.0-19 [1550 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main armel mpi-default-dev armel 1.13 [5472 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.5 MB in 2s (33.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15006 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... 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Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armel (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libk5crypto3:amd64 (1.17-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up libsub-delete-perl (1.00002-2) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up openmpi-common (3.1.3-11) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-4) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up gcc-9-base:armel (9.1.0-8) ... Setting up libsuper-perl (1.20141117-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libedit2:amd64 (3.1-20190324-1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-4) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190711-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.64.0-4) ... Setting up libmonkey-patch-perl (0.03-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.2.0-2) ... Setting up openssh-client (1:8.0p1-3) ... Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.13.4-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:armel (2.28-10) ... Setting up dh-strip-nondeterminism (1.2.0-2) ... Setting up ocl-icd-libopencl1:armel (2.2.12-2) ... Setting up libnl-3-200:armel (3.4.0-1) ... Setting up libtasn1-6:armel (4.13-3) ... Setting up libc6-dev:armel (2.28-10) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.6) ... Setting up libkeyutils1:armel (1.6-6) ... Setting up liblzma5:armel (5.2.4-1) ... Setting up libgpg-error0:armel (1.36-2) ... Setting up libgcc1:armel (1:9.1.0-8) ... Setting up libssl1.1:armel (1.1.1c-1) ... Setting up libsqlite3-0:armel (3.29.0-1) ... Setting up libnghttp2-14:armel (1.37.0-1) ... Setting up libunistring2:armel (0.9.10-2) ... Setting up libgcrypt20:armel (1.8.4-5) ... Setting up debhelper (12.1.1) ... Setting up zlib1g:armel (1:1.2.11.dfsg-1) ... Setting up libffi6:armel (3.2.1-9) ... Setting up libidn2-0:armel (2.0.5-1) ... Setting up libcom-err2:armel (1.45.2-1) ... Setting up libgomp1:armel (9.1.0-8) ... Setting up libkrb5support0:armel (1.17-4) ... Setting up libnl-route-3-200:armel (3.4.0-1) ... Setting up libsasl2-modules-db:armel (2.1.27+dfsg-1) ... Setting up libasan5:armel (9.1.0-8) ... Setting up libsqlite3-dev:armel (3.29.0-1) ... Setting up libgmp10:armel (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:armel (0.23.15-2) ... Setting up libssl-dev:armel (1.1.1c-1) ... Setting up libatomic1:armel (9.1.0-8) ... Setting up libk5crypto3:armel (1.17-4) ... Setting up libnettle6:armel (3.4.1-1) ... Setting up libltdl7:armel (2.4.6-10) ... Setting up libsasl2-2:armel (2.1.27+dfsg-1) ... Setting up libevent-core-2.1-6:armel (2.1.8-stable-4) ... Setting up libgfortran5:armel (9.1.0-8) ... Setting up libevent-2.1-6:armel (2.1.8-stable-4) ... Setting up libnl-3-dev:armel (3.4.0-1) ... Setting up libssh2-1:armel (1.8.0-2.1) ... Setting up libkrb5-3:armel (1.17-4) ... Setting up libstdc++6:armel (9.1.0-8) ... Setting up libevent-pthreads-2.1-6:armel (2.1.8-stable-4) ... Setting up libpciaccess0:armel (0.14-1) ... Setting up libibverbs1:armel (24.0-2) ... Setting up libpsl5:armel (0.20.2-2) ... Setting up ibverbs-providers:armel (24.0-2) ... Setting up libhogweed4:armel (3.4.1-1) ... Setting up libhwloc5:armel (1.11.12-3) ... Setting up libicu63:armel (63.2-2) ... Setting up libnl-route-3-dev:armel (3.4.0-1) ... Setting up libltdl-dev:armel (2.4.6-10) ... Setting up libgnutls30:armel (3.6.8-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2) ... Setting up libgssapi-krb5-2:armel (1.17-4) ... Setting up libubsan1:armel (9.1.0-8) ... Setting up libhwloc-dev:armel (1.11.12-3) ... Setting up libxml2:armel (2.9.4+dfsg1-7+b3) ... Setting up libldap-2.4-2:armel (2.4.47+dfsg-3) ... Setting up libcurl3-gnutls:armel (7.64.0-4) ... Setting up libibverbs-dev:armel (24.0-2) ... Setting up libcurl4-gnutls-dev:armel (7.64.0-4) ... Setting up libhwloc-plugins:armel (1.11.12-3) ... Setting up libgcc-8-dev:armel (8.3.0-19) ... Setting up libstdc++-8-dev:armel (8.3.0-19) ... Setting up libpmix2:armel (3.1.3-1) ... Setting up libopenmpi3:armel (3.1.3-11) ... Setting up openmpi-bin:armel (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armel (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/openmpi/include to provide /usr/include/arm-linux-gnueabi/mpi (mpi-arm-linux-gnueabi) in auto mode Setting up mpi-default-dev:armel (1.13) ... Setting up sbuild-build-depends-hyphy-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190707-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-8 libstdc++6-armel-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-5 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190707-1 binutils-arm-linux-gnueabi_2.32.51.20190707-1 binutils-common_2.32.51.20190707-1 binutils-x86-64-linux-gnu_2.32.51.20190707-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-arm-linux-gnueabi_8.3.0-19cross1 cpp-arm-linux-gnueabi_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.2 dh-autoreconf_19 dh-strip-nondeterminism_1.2.0-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190711-1 e2fsprogs_1.45.2-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-arm-linux-gnueabi_8.3.0-19cross1 g++-arm-linux-gnueabi_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-arm-linux-gnueabi_8.3.0-19cross1 gcc-8-arm-linux-gnueabi-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-8 gcc-9-cross-base_9.1.0-8cross1 gcc-arm-linux-gnueabi_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 ibverbs-providers_24.0-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_9.1.0-8 libasan5-armel-cross_9.1.0-8cross1 libatomic1_9.1.0-8 libatomic1-armel-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-1 libaudit1_1:2.8.5-1 libbinutils_2.32.51.20190707-1 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armel-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-armel-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-8 libcom-err2_1.45.2-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.64.0-4 libcurl4_7.64.0-4 libcurl4-gnutls-dev_7.64.0-4 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libedit2_3.1-20190324-1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.6-2 libext2fs2_1.45.2-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.2.0-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-armel-cross_8.3.0-19cross1 libgcc1_1:9.1.0-8 libgcc1-armel-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_9.1.0-8 libglib2.0-0_2.58.3-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-8 libgomp1-armel-cross_9.1.0-8cross1 libgpg-error0_1.36-2 libgssapi-krb5-2_1.17-4 libhogweed4_3.4.1-1 libhwloc-dev_1.11.12-3 libhwloc-plugins_1.11.12-3 libhwloc5_1.11.12-3 libibverbs-dev_24.0-2 libibverbs1_24.0-2 libicu63_63.2-2 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-8 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-4 libkeyutils1_1.6-6 libkrb5-3_1.17-4 libkrb5support0_1.17-4 libldap-2.4-2_2.4.47+dfsg-3 libldap-common_2.4.47+dfsg-3 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-8 libltdl-dev_2.4.6-10 libltdl7_2.4.6-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmonkey-patch-perl_0.03-2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libopenmpi-dev_3.1.3-11 libopenmpi3_3.1.3-11 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpmix2_3.1.3-1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_9.1.0-8 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.3.3-4 libselinux1_2.9-2 libsemanage-common_2.9-2 libsemanage1_2.9-2 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.29.0-1 libsqlite3-dev_3.29.0-1 libss2_1.45.2-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1c-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armel-cross_8.3.0-19cross1 libstdc++6_9.1.0-8 libstdc++6-armel-cross_9.1.0-8cross1 libsub-delete-perl_1.00002-2 libsub-identify-perl_0.14-1+b1 libsuper-perl_1.20141117-1 libsystemd0_241-6 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_9.1.0-8 libubsan1_9.1.0-8 libubsan1-armel-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-6 libunistring2_0.9.10-2 libuuid1_2.33.1-0.1 libuv1_1.24.1-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-5 linux-libc-dev-armel-cross_4.19.37-5cross3 login_1:4.7-1 lsb-base_10.2019051400 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 mpi-default-dev_1.13 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 ocl-icd-libopencl1_2.2.12-2 openmpi-bin_3.1.3-11 openmpi-common_3.1.3-11 openssh-client_1:8.0p1-3 passwd_1:4.7-1 patch_2.7.6-4 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-hyphy-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 8 18:47:36 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.3.14+dfsg-2.dsc dpkg-source: info: extracting hyphy in /<>/hyphy-2.3.14+dfsg dpkg-source: info: unpacking hyphy_2.3.14+dfsg.orig.tar.xz dpkg-source: info: unpacking hyphy_2.3.14+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying drop_profiling_option.patch dpkg-source: info: applying remove_unneeded_test.patch dpkg-source: info: applying msse_option_only_if_available.patch dpkg-source: info: applying remove_arch_specific_flags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b4e2e8b8-7054-4725-9091-5cd6d6ee482d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.3.14+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Saira Hussain dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/hyphy-2.3.14+dfsg' dh_auto_clean make[1]: Leaving directory '/<>/hyphy-2.3.14+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-arch dh build-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/hyphy-2.3.14+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr cd obj-arm-linux-gnueabi && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=arm -DCMAKE_C_COMPILER=arm-linux-gnueabi-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabi-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabi-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi -DINSTALL_PREFIX=/usr .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE3_EXTENSIONS -- Performing Test HAVE_SSE3_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -- Looking for amd_log in libamdlibm.so -- Looking for amd_log in libamdlibm.so - not found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/arm-linux-gnueabi/libcurl.so (found version "7.64.0") -- Found PkgConfig: /usr/bin/arm-linux-gnueabi-pkg-config (found version "") -- Checking for module 'sqlite3' -- -- Found SQLITE3: /usr/lib/arm-linux-gnueabi/libsqlite3.so -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Looking for pthread.h -- Looking for pthread.h - not found -- Could NOT find Threads (missing: Threads_FOUND) -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR INSTALL_PREFIX PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi make[1]: Leaving directory '/<>/hyphy-2.3.14+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/hyphy-2.3.14+dfsg' # no idea about the purpose of the dynamic library - executables are not simply linked against it dh_auto_build -- MP MPI GTEST # LIB cd obj-arm-linux-gnueabi && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc MP MPI GTEST make[2]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<>/hyphy-2.3.14+dfsg -B/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP make[3]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<>/hyphy-2.3.14+dfsg -B/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi/CMakeFiles 32 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all make[4]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make[5]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' cd /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.3.14+dfsg /<>/hyphy-2.3.14+dfsg /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMP make[5]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make[5]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' [ 3%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/_hyExecutionContext.cpp [ 6%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/alignment.cpp [ 6%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/avllist.cpp [ 9%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/avllistx.cpp [ 9%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/avllistxl.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/avllistxl_iterator.cpp [ 15%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/batchlanhelpers.cpp [ 21%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat 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object CMakeFiles/HYPHYMP.dir/src/core/fisher_exact.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/fisher_exact.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/fisher_exact.cpp [ 37%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/formula.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ 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/<>/hyphy-2.3.14+dfsg/src/core/global_object_lists.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/hbl_env.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/hbl_env.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/hbl_env.cpp [ 43%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/likefunc.cpp [ 46%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/likefunc2.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/likefunc2.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/likefunc2.cpp [ 46%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/likefuncocl.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/likefuncocl.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/likefuncocl.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/list.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/mathobj.cpp [ 53%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/matrix.cpp [ 56%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/nexus.cpp [ 56%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/operation.cpp [ 59%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/parser.cpp [ 62%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/parser2.cpp [ 62%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/polynoml.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/regex.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/sequence.cpp [ 68%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/simplelist.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/site.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/stack.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/string_file_wrapper.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/string_file_wrapper.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/string_file_wrapper.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/strings.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/time_difference.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/time_difference.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/time_difference.cpp [ 81%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/trie.cpp [ 81%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/variable.cpp [ 84%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/core/variablecontainer.cpp [ 87%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/new/bayesgraph.cpp [ 87%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/new/bayesgraph2.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/new/bgm.cpp [ 93%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/new/bgm2.cpp [ 93%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/new/scfg.cpp [ 96%] Building CXX object CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/utils/hyphyunixutils.cpp [ 96%] Building CXX object CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o /usr/bin/arm-linux-gnueabi-g++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.3.14+dfsg/src/core/include -I/<>/hyphy-2.3.14+dfsg/src/lib/Link -I/<>/hyphy-2.3.14+dfsg/src/new/include -I/<>/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.3.14+dfsg/tests/gtests -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -c /<>/hyphy-2.3.14+dfsg/src/mains/unix.cpp [100%] Linking CXX executable HYPHYMP /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMP.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -fopenmp CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o 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CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMP.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMP.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -o HYPHYMP -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 make[5]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' [100%] Built target HYPHYMP make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' cd /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.3.14+dfsg /<>/hyphy-2.3.14+dfsg /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi/CMakeFiles/MP.dir/DependInfo.cmake --color= Scanning dependencies of target MP make[5]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/build make[5]: Entering directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' make[5]: Nothing to be done for 'CMakeFiles/MP.dir/build'. make[5]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' [100%] Built target MP make[4]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi/CMakeFiles 0 make[3]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' make[2]: *** No rule to make target 'MPI'. Stop. make[2]: Leaving directory '/<>/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabi' dh_auto_build: cd obj-arm-linux-gnueabi && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc MP MPI GTEST returned exit code 2 make[1]: *** [debian/rules:24: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/hyphy-2.3.14+dfsg' make: *** [debian/rules:14: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-07-13T00:43:05Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 53376 Build-Time: 98 Distribution: unstable Fail-Stage: build Foreign Architectures: armel Host Architecture: armel Install-Time: 34 Job: hyphy_2.3.14+dfsg-2 Machine Architecture: amd64 Package: hyphy Package-Time: 143 Source-Version: 2.3.14+dfsg-2 Space: 53376 Status: attempted Version: 2.3.14+dfsg-2 -------------------------------------------------------------------------------- Finished at 2019-07-13T00:43:05Z Build needed 00:02:23, 53376k disk space