sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | igor 1.3.0+dfsg-1 (arm64) Mon, 04 Nov 2019 00:36:09 +0000 | +==============================================================================+ Package: igor Version: 1.3.0+dfsg-1 Source Version: 1.3.0+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-2623da4b-6557-425d-8941-9afe07befca8' with '<>' I: NOTICE: Log filtering will replace 'build/igor-V6kS0e/resolver-p3NsKf' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-03-0818.43.pdiff [5268 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-03-1415.23.pdiff [8461 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-03-2017.32.pdiff [15.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-03-2017.32.pdiff [15.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-03-0818.43.pdiff [3395 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-03-1415.23.pdiff [3904 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-03-2017.32.pdiff [7632 B] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [7989 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-03-2017.32.pdiff [7632 B] Fetched 8228 kB in 2s (4127 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'igor' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/igor.git Please use: git clone https://salsa.debian.org/med-team/igor.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 413 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main igor 1.3.0+dfsg-1 (dsc) [1986 B] Get:2 http://debian.oregonstate.edu/debian unstable/main igor 1.3.0+dfsg-1 (tar) [408 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main igor 1.3.0+dfsg-1 (diff) [3692 B] Fetched 413 kB in 0s (8674 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/igor-V6kS0e/igor-1.3.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/igor-V6kS0e' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), libjemalloc-dev, libgsl-dev, libatlas-base-dev | libcblas-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 11), libjemalloc-dev, libgsl-dev, libatlas-base-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [426 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1888 B in 0s (88.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatlas-base-dev:arm64 libatlas3-base:arm64 libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjemalloc-dev:arm64 libjemalloc2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libatlas-doc:arm64 liblapack-doc:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 gsl-ref-psdoc:arm64 | gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64 binutils:arm64 libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatlas-base-dev:arm64 libatlas3-base:arm64 libatomic1:arm64 libatomic1-arm64-cross libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libgfortran5:arm64 libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl23:arm64 libgslcblas0:arm64 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjemalloc-dev:arm64 libjemalloc2:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 70.7 MB of archives. After this operation, 313 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-16 [194 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.33.1-2 [2775 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-15cross1 [194 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-15cross1 [6539 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-15cross1 [189 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-1cross7 [1253 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-15cross1 [34.1 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-15cross1 [76.6 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-15cross1 [24.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-15cross1 [8640 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-15cross1 [347 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-15cross1 [121 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-15cross1 [267 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-15cross1 [415 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-15cross1 [117 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-15cross1 [882 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-15cross1 [6903 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.9-2cross7 [1310 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-1cross7 [2273 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-15cross1 [1635 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-15cross1 [7117 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.2-1 [23.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.2-1 [14.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.2-2 [1318 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-16 [34.1 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-3 [2464 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-16 [354 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main arm64 libgfortran5 arm64 9.2.1-16 [322 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main arm64 libatlas3-base arm64 3.10.3-8 [2409 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main arm64 libatlas-base-dev arm64 3.10.3-8 [2954 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-16 [8848 B] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.3.7-1 [975 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-3 [2286 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-16 [78.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-16 [24.7 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-16 [122 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-16 [274 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-16 [454 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-16 [117 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-16 [883 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libgslcblas0 arm64 2.5+dfsg-6+b1 [69.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl23 arm64 2.5+dfsg-6+b1 [761 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 libgsl-dev arm64 2.5+dfsg-6+b1 [939 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 libjemalloc2 arm64 5.2.1-1 [198 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 libjemalloc-dev arm64 5.2.1-1 [328 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-16 [1655 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.7 MB in 1s (72.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14998 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-1_amd64.deb ... Unpacking man-db (2.9.0-1) ... 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Setting up file (1:5.37-6) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.29-1cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-15cross1) ... Setting up linux-libc-dev-arm64-cross (5.2.9-2cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.2.1-16) ... Setting up libatomic1-arm64-cross (9.2.1-15cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-15cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up liblsan0-arm64-cross (9.2.1-15cross1) ... Setting up libgomp1-arm64-cross (9.2.1-15cross1) ... Setting up libtool (2.4.6-11) ... Setting up libtsan0-arm64-cross (9.2.1-15cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.29-1cross7) ... Setting up libasan5-arm64-cross (9.2.1-15cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-15cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (9.2.1-15cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-arm64-cross (9.2.1-15cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-15cross1) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-15cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-15cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-15cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libc6:arm64 (2.29-3) ... Setting up libc6-dev:arm64 (2.29-3) ... Setting up libitm1:arm64 (9.2.1-16) ... Setting up libgslcblas0:arm64 (2.5+dfsg-6+b1) ... Setting up libgcc1:arm64 (1:9.2.1-16) ... Setting up libgomp1:arm64 (9.2.1-16) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.2.1-16) ... Setting up libgsl23:arm64 (2.5+dfsg-6+b1) ... Setting up libatomic1:arm64 (9.2.1-16) ... Setting up libgfortran5:arm64 (9.2.1-16) ... Setting up libstdc++6:arm64 (9.2.1-16) ... Setting up liblsan0:arm64 (9.2.1-16) ... Setting up libtsan0:arm64 (9.2.1-16) ... Setting up libgsl-dev:arm64 (2.5+dfsg-6+b1) ... Setting up libatlas3-base:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up debhelper (12.7.1) ... Setting up libjemalloc2:arm64 (5.2.1-1) ... Setting up libatlas-base-dev:arm64 (3.10.3-8) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/atlas/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libjemalloc-dev:arm64 (5.2.1-1) ... Setting up libubsan1:arm64 (9.2.1-16) ... Setting up libgcc-9-dev:arm64 (9.2.1-16) ... Setting up libstdc++-9-dev:arm64 (9.2.1-16) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-16 gcc-8_8.3.0-23 gcc-9_9.2.1-16 libc6-dev_2.29-3 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-16 libstdc++-9-dev-arm64-cross_9.2.1-15cross1 libstdc++6_9.2.1-16 libstdc++6-arm64-cross_9.2.1-15cross1 linux-libc-dev_5.3.7-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.33.1-2 binutils-aarch64-linux-gnu_2.33.1-2 binutils-common_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-16 cpp-9-aarch64-linux-gnu_9.2.1-15cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-16 g++-9-aarch64-linux-gnu_9.2.1-15cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-16 gcc-9-aarch64-linux-gnu_9.2.1-15cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-15cross1 gcc-9-base_9.2.1-16 gcc-9-cross-base_9.2.1-15cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-16 libasan5-arm64-cross_9.2.1-15cross1 libatlas-base-dev_3.10.3-8 libatlas3-base_3.10.3-8 libatomic1_9.2.1-16 libatomic1-arm64-cross_9.2.1-15cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3 libc-dev-bin_2.29-3 libc6_2.29-3 libc6-arm64-cross_2.29-1cross7 libc6-dev_2.29-3 libc6-dev-arm64-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1 libcc1-0_9.2.1-16 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-16 libgcc-9-dev-arm64-cross_9.2.1-15cross1 libgcc1_1:9.2.1-16 libgcc1-arm64-cross_1:9.2.1-15cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-16 libglib2.0-0_2.62.2-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-16 libgomp1-arm64-cross_9.2.1-15cross1 libgpg-error0_1.36-7 libgsl-dev_2.5+dfsg-6+b1 libgsl23_2.5+dfsg-6+b1 libgslcblas0_2.5+dfsg-6+b1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-16 libitm1-arm64-cross_9.2.1-15cross1 libjemalloc-dev_5.2.1-1 libjemalloc2_5.2.1-1 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-16 liblsan0-arm64-cross_9.2.1-15cross1 liblz4-1_1.9.1-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libquadmath0_9.2.1-16 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-16 libstdc++-9-dev-arm64-cross_9.2.1-15cross1 libstdc++6_9.2.1-16 libstdc++6-arm64-cross_9.2.1-15cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-16 libtsan0-arm64-cross_9.2.1-15cross1 libubsan1_9.2.1-16 libubsan1-arm64-cross_9.2.1-15cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.7-1 linux-libc-dev-arm64-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: igor Binary: igor Architecture: any Version: 1.3.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/qmarcou/IGoR/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/igor Vcs-Git: https://salsa.debian.org/med-team/igor.git Build-Depends: debhelper (>= 11), libjemalloc-dev, libgsl-dev, libatlas-base-dev | libcblas-dev Package-List: igor deb science optional arch=any Checksums-Sha1: 3c59090b6da5bda71c170a2f7204467634b15c5e 407624 igor_1.3.0+dfsg.orig.tar.xz 72152f2ccfba78b52931a8055e40d5fc335a611f 3692 igor_1.3.0+dfsg-1.debian.tar.xz Checksums-Sha256: c4cac92b4282b8c6cb7fef85eb7af1e0fbd0c27321716d46d3353b83a886f56b 407624 igor_1.3.0+dfsg.orig.tar.xz ccee38136c091011517e5a53cbd99af0a18402879f18d738f70375f9a5e9873f 3692 igor_1.3.0+dfsg-1.debian.tar.xz Files: 4a19673db9c20178e6fdafc9bc6d42a8 407624 igor_1.3.0+dfsg.orig.tar.xz f6d76091c7fe9f99816260b77ac271a8 3692 igor_1.3.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxMmuoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEqPA/9HT0I4htQQ3UtybD+5RleEY7yeuaYUMSJ a5h2p4cDaCK6j5Dvwlvni05pNVfNJClL3LvDJ9p6ZWcNlVsCQqGiQjxNGe1exjt6 Gua9e2CjbfrHH7CzCmeYCmaIWtQdEsJ5lRwRC+fbA2djx8EmOhwCqa/3g8QdxyOs n2VII4TQZQF6LqjGsIwgTSDSEWA3nPQ2gAeU+3cIUMeAUx/m2Fj3A09+yoUZXxvN wDBObIbejdl/2fOpIxvy7PijRRo3IgAikaVQix7jhIyQb47ROeqeFIklR9g5KqF9 ce+OmkRU8/uOQl+ksZtNipdKwmL1DQphoSS6n/h4sVYmOuP1IxkJQ5AHxbghsWrh WGSb6A4nmm2+5BIaE7tMQ803yDsa73GDpzBg1Gf1jnHEU2PXBnpbrwvnKvpvO/8M 8isS6iIrYTyhb5GtHa0aiCI4xf1VzbfqSDKQ+Mn4V6WCttTENFEthZUCxf3NjY0y hieF9FFxuYAGwowDsbt1QLRSA1J7hKL5wSuVewpyda2mZ1wNUJpaT/Zg/F5KJJmm 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APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-2623da4b-6557-425d-8941-9afe07befca8 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package igor dpkg-buildpackage: info: source version 1.3.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -rf docs/latex rm -rf docs/html rm -rf config.guess config.sub make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: installing './compile' configure.ac:14: installing './config.guess' configure.ac:14: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' igor_src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking dependency style of aarch64-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by aarch64-linux-gnu-gcc... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/aarch64-linux-gnu-nm -B checking the name lister (/usr/bin/aarch64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/aarch64-linux-gnu/bin/ld option to reload object files... -r checking for aarch64-linux-gnu-objdump... aarch64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for aarch64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-linux-gnu-ar... aarch64-linux-gnu-ar checking for archiver @FILE support... @ checking for aarch64-linux-gnu-strip... (cached) aarch64-linux-gnu-strip checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking command to parse /usr/bin/aarch64-linux-gnu-nm -B output from aarch64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for aarch64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if aarch64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for aarch64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-gcc static flag -static works... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... yes checking if aarch64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-gcc linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking dependency style of aarch64-linux-gnu-g++... none checking how to run the C++ preprocessor... aarch64-linux-gnu-g++ -E checking for ld used by aarch64-linux-gnu-g++... /usr/aarch64-linux-gnu/bin/ld checking if the linker (/usr/aarch64-linux-gnu/bin/ld) is GNU ld... yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking for aarch64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if aarch64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if aarch64-linux-gnu-g++ static flag -static works... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... yes checking if aarch64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the aarch64-linux-gnu-g++ linker (/usr/aarch64-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for aarch64-linux-gnu-gcc... (cached) aarch64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether aarch64-linux-gnu-gcc accepts -g... (cached) yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... (cached) yes checking dependency style of aarch64-linux-gnu-gcc... (cached) none checking whether aarch64-linux-gnu-g++ supports C++11 features by default... yes checking for aarch64-linux-gnu-g++ option to support OpenMP... -fopenmp checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for size_t... yes checking for pow... yes checking for sqrt... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating igor_src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in igor_src (/<>/igor_src) configure: WARNING: no configuration information is in igor_src dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in igor_src make[3]: Entering directory '/<>/igor_src' aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Aligner.o `test -f 'Aligner.cpp' || echo './'`Aligner.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Bestscenarioscounter.o `test -f 'Bestscenarioscounter.cpp' || echo './'`Bestscenarioscounter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Counter.o `test -f 'Counter.cpp' || echo './'`Counter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Coverageerrcounter.o `test -f 'Coverageerrcounter.cpp' || echo './'`Coverageerrcounter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Deletion.o `test -f 'Deletion.cpp' || echo './'`Deletion.cpp Deletion.cpp:1590:23: warning: multi-character character constant [-Wmultichar] 1590 | else if ((*iter)=='14'){ | ^~~~ Deletion.cpp: In member function ‘virtual void Deletion::iterate(double&, Downstream_scenario_proba_bound_map&, const string&, const Int_Str&, Index_map&, const std::unordered_map, std::vector, int> > >&, std::shared_ptr&, Marginal_array_p&, const Marginal_array_p&, const std::unordered_map >&, Seq_type_str_p_map&, Seq_offsets_map&, std::shared_ptr&, std::map >&, const std::unordered_map, std::shared_ptr >&, Safety_bool_map&, Mismatch_vectors_map&, double&, double&)’: Deletion.cpp:909:70: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 909 | throw invalid_argument("Unknown side for D deletion: " + (*this).event_side); //TODO explicitly throw the side used | ^~~~~~~~~~ Deletion.cpp:909:70: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Deletion.h:29, from Deletion.cpp:26: Utils.h:67:13: note: candidate 2: ‘std::string operator+(const string&, Seq_side)’ 67 | std::string operator+(const std::string& , Seq_side ); | ^~~~~~~~ Deletion.cpp:1173:67: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 1173 | throw invalid_argument("Unknown gene for deletions : " + this->event_class); | ^~~~~~~~~~~ Deletion.cpp:1173:67: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Deletion.h:29, from Deletion.cpp:26: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ Deletion.cpp: In member function ‘virtual bool Deletion::has_effect_on(Seq_type) const’: Deletion.cpp:1705:2: warning: control reaches end of non-void function [-Wreturn-type] 1705 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Dinuclmarkov.o `test -f 'Dinuclmarkov.cpp' || echo './'`Dinuclmarkov.cpp Dinuclmarkov.cpp: In member function ‘virtual void Dinucl_markov::iterate(double&, Downstream_scenario_proba_bound_map&, const string&, const Int_Str&, Index_map&, const std::unordered_map, std::vector, int> > >&, std::shared_ptr&, Marginal_array_p&, const Marginal_array_p&, const std::unordered_map >&, Seq_type_str_p_map&, Seq_offsets_map&, std::shared_ptr&, std::map >&, const std::unordered_map, std::shared_ptr >&, Safety_bool_map&, Mismatch_vectors_map&, double&, double&)’: Dinuclmarkov.cpp:147:81: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 147 | throw invalid_argument("Unknown gene class for DincuclMarkov model: " + this->event_class); | ^~~~~~~~~~~ Dinuclmarkov.cpp:147:81: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Dinuclmarkov.h:32, from Dinuclmarkov.cpp:26: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ Dinuclmarkov.cpp: In member function ‘virtual std::queue Dinucl_markov::draw_random_realization(const Marginal_array_p&, std::unordered_map, int>&, const std::unordered_map, std::vector, int> > >&, std::unordered_map >&, std::mt19937_64&) const’: Dinuclmarkov.cpp:211:81: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 211 | throw invalid_argument("Unknown gene class for DincuclMarkov model: " + this->event_class); | ^~~~~~~~~~~ Dinuclmarkov.cpp:211:81: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Dinuclmarkov.h:32, from Dinuclmarkov.cpp:26: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ Dinuclmarkov.cpp: In member function ‘virtual void Dinucl_markov::iterate_initialize_Len_proba(Seq_type, std::map&, std::queue >&, double&, const Marginal_array_p&, Index_map&, Seq_type_str_p_map&, int&) const’: Dinuclmarkov.cpp:566:81: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 566 | throw invalid_argument("Unknown gene class for DincuclMarkov model: " + this->event_class); | ^~~~~~~~~~~ Dinuclmarkov.cpp:566:81: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Dinuclmarkov.h:32, from Dinuclmarkov.cpp:26: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ In file included from Errorrate.h:29, from Rec_Event.h:38, from Dinuclmarkov.h:32, from Dinuclmarkov.cpp:26: Utils.h: In member function ‘Matrix& Matrix::operator=(const Matrix&) [with T = double]’: Utils.h:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Errorscounter.o `test -f 'Errorscounter.cpp' || echo './'`Errorscounter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Errorrate.o `test -f 'Errorrate.cpp' || echo './'`Errorrate.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Genechoice.o `test -f 'Genechoice.cpp' || echo './'`Genechoice.cpp Genechoice.cpp: In member function ‘virtual void Gene_choice::iterate(double&, Downstream_scenario_proba_bound_map&, const string&, const Int_Str&, Index_map&, const std::unordered_map, std::vector, int> > >&, std::shared_ptr&, Marginal_array_p&, const Marginal_array_p&, const std::unordered_map >&, Seq_type_str_p_map&, Seq_offsets_map&, std::shared_ptr&, std::map >&, const std::unordered_map, std::shared_ptr >&, Safety_bool_map&, Mismatch_vectors_map&, double&, double&)’: Genechoice.cpp:908:73: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 908 | throw invalid_argument("Unknown gene_class for GeneChoice: " + this->event_class); | ^~~~~~~~~~~ Genechoice.cpp:908:73: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Genechoice.h:29, from Genechoice.cpp:26: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-GenModel.o `test -f 'GenModel.cpp' || echo './'`GenModel.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-HypermutationfullNmererrorrate.o `test -f 'HypermutationfullNmererrorrate.cpp' || echo './'`HypermutationfullNmererrorrate.cpp In file included from Errorrate.h:29, from HypermutationfullNmererrorrate.h:30, from HypermutationfullNmererrorrate.cpp:27: Utils.h: In member function ‘Matrix& Matrix::operator=(const Matrix&) [with T = double]’: Utils.h:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Hypermutationglobalerrorrate.o `test -f 'Hypermutationglobalerrorrate.cpp' || echo './'`Hypermutationglobalerrorrate.cpp In file included from Errorrate.h:29, from Hypermutationglobalerrorrate.h:30, from Hypermutationglobalerrorrate.cpp:27: Utils.h: In member function ‘Matrix& Matrix::operator=(const Matrix&) [with T = double]’: Utils.h:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Insertion.o `test -f 'Insertion.cpp' || echo './'`Insertion.cpp Insertion.cpp: In member function ‘virtual void Insertion::iterate(double&, Downstream_scenario_proba_bound_map&, const string&, const Int_Str&, Index_map&, const std::unordered_map, std::vector, int> > >&, std::shared_ptr&, Marginal_array_p&, const Marginal_array_p&, const std::unordered_map >&, Seq_type_str_p_map&, Seq_offsets_map&, std::shared_ptr&, std::map >&, const std::unordered_map, std::shared_ptr >&, Safety_bool_map&, Mismatch_vectors_map&, double&, double&)’: Insertion.cpp:244:72: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: 244 | throw invalid_argument("Unknown gene_class for Insertion: " + this->event_class); | ^~~~~~~~~~~ Insertion.cpp:244:72: note: candidate 1: ‘operator+(const char*, long int)’ In file included from Errorrate.h:29, from Rec_Event.h:38, from Insertion.h:30, from Insertion.cpp:27: Utils.h:66:13: note: candidate 2: ‘std::string operator+(const string&, Gene_class)’ 66 | std::string operator+(const std::string& , Gene_class ); | ^~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-IntStr.o `test -f 'IntStr.cpp' || echo './'`IntStr.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-main.o `test -f 'main.cpp' || echo './'`main.cpp main.cpp: In function ‘int main(int, char**)’: main.cpp:241:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 241 | system(&("man igor")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~ main.cpp:265:11: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 265 | freopen(argv[++carg_i],"a+",stdout); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1480:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1480 | system(&("mkdir " + cl_path )[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1631:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1631 | system(&("mkdir " + cl_path + "run_demo")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1665:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1665 | system(&("mkdir " + cl_path + "aligns")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1929:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1929 | system(&("mkdir " + cl_path + batchname + "output")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1933:11: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1933 | system(&("mkdir " + cl_path + batchname + "inference")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1939:11: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1939 | system(&("mkdir " + cl_path + batchname + "evaluate")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ main.cpp:1949:10: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] 1949 | system(&("mkdir " + cl_path + batchname + "generated")[0]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from Errorrate.h:29, from Rec_Event.h:38, from Deletion.h:29, from main.cpp:28: Utils.h: In member function ‘Matrix& Matrix::operator=(const Matrix&) [with T = double]’: Utils.h:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Model_marginals.o `test -f 'Model_marginals.cpp' || echo './'`Model_marginals.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Model_Parms.o `test -f 'Model_Parms.cpp' || echo './'`Model_Parms.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Pgencounter.o `test -f 'Pgencounter.cpp' || echo './'`Pgencounter.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Rec_Event.o `test -f 'Rec_Event.cpp' || echo './'`Rec_Event.cpp aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Singleerrorrate.o `test -f 'Singleerrorrate.cpp' || echo './'`Singleerrorrate.cpp In file included from Errorrate.h:29, from Singleerrorrate.h:30, from Singleerrorrate.cpp:27: Utils.h: In member function ‘Matrix& Matrix::operator=(const Matrix&) [with T = double]’: Utils.h:140:2: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o igor-Utils.o `test -f 'Utils.cpp' || echo './'`Utils.cpp /bin/bash ../libtool --tag=CXX --mode=link aarch64-linux-gnu-g++ -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o igor igor-Aligner.o igor-Bestscenarioscounter.o igor-Counter.o igor-Coverageerrcounter.o igor-Deletion.o igor-Dinuclmarkov.o igor-Errorscounter.o igor-Errorrate.o igor-Genechoice.o igor-GenModel.o igor-HypermutationfullNmererrorrate.o igor-Hypermutationglobalerrorrate.o igor-Insertion.o igor-IntStr.o igor-main.o igor-Model_marginals.o igor-Model_Parms.o igor-Pgencounter.o igor-Rec_Event.o igor-Singleerrorrate.o igor-Utils.o -lgsl -lcblas -ljemalloc -lpthread -ldl libtool: link: aarch64-linux-gnu-g++ -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -o igor igor-Aligner.o igor-Bestscenarioscounter.o igor-Counter.o igor-Coverageerrcounter.o igor-Deletion.o igor-Dinuclmarkov.o igor-Errorscounter.o igor-Errorrate.o igor-Genechoice.o igor-GenModel.o igor-HypermutationfullNmererrorrate.o igor-Hypermutationglobalerrorrate.o igor-Insertion.o igor-IntStr.o igor-main.o igor-Model_marginals.o igor-Model_Parms.o igor-Pgencounter.o igor-Rec_Event.o igor-Singleerrorrate.o igor-Utils.o -lgsl -lcblas -ljemalloc -lpthread -ldl -fopenmp make[3]: Leaving directory '/<>/igor_src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make -j1 install DESTDIR=/<>/igor-1.3.0\+dfsg/debian/igor AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in igor_src make[2]: Entering directory '/<>/igor_src' make[3]: Entering directory '/<>/igor_src' /bin/mkdir -p '/<>/debian/igor/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c igor '/<>/debian/igor/usr/bin' libtool: install: /usr/bin/install -c igor /<>/debian/igor/usr/bin/igor make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/igor_src' make[2]: Leaving directory '/<>/igor_src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. mkdir -p /<>/debian/igor/usr/share/igor/models cp -r models/* /<>/debian/igor/usr/share/igor/models /bin/mkdir -p '/<>/debian/igor/usr/share/igor/demo' /usr/bin/install -c -m 644 demo/genomicVs_with_primers.fasta demo/genomicDs.fasta demo/genomicJs_all_curated.fasta demo/murugan_naive1_noncoding_demo_seqs.txt '/<>/debian/igor/usr/share/igor/demo' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_perl: /usr/lib/aarch64-linux-gnu/perl/cross-config-5.30.0/Config.pm does not exist (missing build dependency on perl-xs-dev?) dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/igor/usr/bin/igor was not linked against libcblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'igor' in '../igor_1.3.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'igor-dbgsym' in '../igor-dbgsym_1.3.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../igor_1.3.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-11-04T00:39:05Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ igor_1.3.0+dfsg-1_arm64.changes: -------------------------------- Format: 1.8 Date: Sat, 26 Jan 2019 17:21:02 +0100 Source: igor Binary: igor igor-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 1.3.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: igor - infers V(D)J recombination processes from sequencing data Changes: igor (1.3.0+dfsg-1) unstable; urgency=medium . * Team upload. * Debian Med team maintenance * Fix watch file * Standards-Version: 4.2.1 * Add missing Build-Depends: libatlas-base-dev | libcblas-dev * Fix for gcc-8 does not expose inline definitions to other source files * hardening=+all Checksums-Sha1: c606c3150b6ac30f78b2617c0a9a1e00c8c16448 6372868 igor-dbgsym_1.3.0+dfsg-1_arm64.deb 7306f56d19662ae3f479a92b0a029e8027a24988 4884 igor_1.3.0+dfsg-1_arm64.buildinfo e1e8e9ce5b5fd75f1866331a49c24646e4c555ee 493448 igor_1.3.0+dfsg-1_arm64.deb Checksums-Sha256: 1c105f5112da4737ba854fa8418385f136207ad8d1d8f0937826df81619b22d0 6372868 igor-dbgsym_1.3.0+dfsg-1_arm64.deb 8b7d5c5093038968a3f56a2e5ff2cf0776f525c180ce8bbc396b586ca104ace7 4884 igor_1.3.0+dfsg-1_arm64.buildinfo 8dd2d8923c69059b7cc1812cbb9ccfff85dc21e0ed200e932f788e248fbe9ba6 493448 igor_1.3.0+dfsg-1_arm64.deb Files: 411ba201cb0e1e4d1b2e166e857f3b4a 6372868 debug optional igor-dbgsym_1.3.0+dfsg-1_arm64.deb 2682ac20cf71ee6f5f9af5e97b64a122 4884 science optional igor_1.3.0+dfsg-1_arm64.buildinfo e513516e73837ccbadbb620ae3cefd0b 493448 science optional igor_1.3.0+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: igor Binary: igor Architecture: arm64 Version: 1.3.0+dfsg-1 Checksums-Md5: 411ba201cb0e1e4d1b2e166e857f3b4a 6372868 igor-dbgsym_1.3.0+dfsg-1_arm64.deb e513516e73837ccbadbb620ae3cefd0b 493448 igor_1.3.0+dfsg-1_arm64.deb Checksums-Sha1: c606c3150b6ac30f78b2617c0a9a1e00c8c16448 6372868 igor-dbgsym_1.3.0+dfsg-1_arm64.deb e1e8e9ce5b5fd75f1866331a49c24646e4c555ee 493448 igor_1.3.0+dfsg-1_arm64.deb Checksums-Sha256: 1c105f5112da4737ba854fa8418385f136207ad8d1d8f0937826df81619b22d0 6372868 igor-dbgsym_1.3.0+dfsg-1_arm64.deb 8dd2d8923c69059b7cc1812cbb9ccfff85dc21e0ed200e932f788e248fbe9ba6 493448 igor_1.3.0+dfsg-1_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 04 Nov 2019 00:39:04 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.33.1-2), binutils-common (= 2.33.1-2), binutils-x86-64-linux-gnu (= 2.33.1-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-23), cpp-9 (= 9.2.1-16), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.7.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-6), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-16), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-23), gcc-8-base (= 8.3.0-23), gcc-9 (= 9.2.1-16), gcc-9-base (= 9.2.1-16), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.67-1), libasan5 (= 9.2.1-16), libatlas-base-dev (= 3.10.3-8), libatlas3-base (= 3.10.3-8), libatomic1 (= 9.2.1-16), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.33.1-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-3), libc-dev-bin (= 2.29-3), libc6 (= 2.29-3), libc6-dev (= 2.29-3), libcap-ng0 (= 0.7.9-2.1), libcc1-0 (= 9.2.1-16), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.250), libdebhelper-perl (= 12.7.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.2-1), libgcc-8-dev (= 8.3.0-23), libgcc-9-dev (= 9.2.1-16), libgcc1 (= 1:9.2.1-16), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran5 (= 9.2.1-16), libglib2.0-0 (= 2.62.2-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-16), libgpg-error0 (= 1.36-7), libgsl-dev (= 2.5+dfsg-6+b1), libgsl23 (= 2.5+dfsg-6+b1), libgslcblas0 (= 2.5+dfsg-6+b1), libicu63 (= 63.2-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-16), libjemalloc-dev (= 5.2.1-1), libjemalloc2 (= 5.2.1-1), liblsan0 (= 9.2.1-16), liblz4-1 (= 1.9.1-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-6), libmagic1 (= 1:5.37-6), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-23), libncurses6 (= 6.1+20191019-1), libncursesw6 (= 6.1+20191019-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-16), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-16), libstdc++6 (= 9.2.1-16), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-7), libtinfo6 (= 6.1+20191019-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-16), libubsan1 (= 9.2.1-16), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.3.7-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.0-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20191019-1), ncurses-bin (= 6.1+20191019-1), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96-1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1548519662" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ igor-dbgsym_1.3.0+dfsg-1_arm64.deb ---------------------------------- new Debian package, version 2.0. size 6372868 bytes: control archive=536 bytes. 369 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: igor-dbgsym Source: igor Version: 1.3.0+dfsg-1 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 6463 Depends: igor (= 1.3.0+dfsg-1) Section: debug Priority: optional Description: debug symbols for igor Build-Ids: d0ba237b3bbd7df6170116d3f912ab365923c801 drwxr-xr-x root/root 0 2019-01-26 16:21 ./ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/lib/debug/.build-id/d0/ -rw-r--r-- root/root 6607296 2019-01-26 16:21 ./usr/lib/debug/.build-id/d0/ba237b3bbd7df6170116d3f912ab365923c801.debug drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-01-26 16:21 ./usr/share/doc/igor-dbgsym -> igor igor_1.3.0+dfsg-1_arm64.deb --------------------------- new Debian package, version 2.0. size 493448 bytes: control archive=2136 bytes. 624 bytes, 13 lines control 5955 bytes, 59 lines md5sums Package: igor Version: 1.3.0+dfsg-1 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 2371 Depends: libatlas3-base, libc6 (>= 2.29), libgcc1 (>= 1:4.2), libgomp1 (>= 6), libgsl23 (>= 2.5), libjemalloc2 (>= 5.0.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/qmarcou/IGoR/ Description: infers V(D)J recombination processes from sequencing data IGoR (Inference and Generation of Repertoires) is a versatile software to analyze and model immune receptors generation, selection, mutation and all other processes. drwxr-xr-x root/root 0 2019-01-26 16:21 ./ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/bin/ -rwxr-xr-x root/root 800872 2019-01-26 16:21 ./usr/bin/igor drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/doc/igor/ -rw-r--r-- root/root 398 2019-01-26 16:21 ./usr/share/doc/igor/changelog.Debian.gz -rw-r--r-- root/root 1056 2018-08-04 19:27 ./usr/share/doc/igor/changelog.gz -rw-r--r-- root/root 1090 2019-01-26 16:21 ./usr/share/doc/igor/copyright drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/demo/ -rw-r--r-- root/root 84 2019-01-26 16:21 ./usr/share/igor/demo/genomicDs.fasta -rw-r--r-- root/root 2022 2019-01-26 16:21 ./usr/share/igor/demo/genomicJs_all_curated.fasta -rw-r--r-- root/root 33856 2019-01-26 16:21 ./usr/share/igor/demo/genomicVs_with_primers.fasta -rw-r--r-- root/root 18300 2019-01-26 16:21 ./usr/share/igor/demo/murugan_naive1_noncoding_demo_seqs.txt drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/ -rw-r--r-- root/root 690 2019-01-26 16:21 ./usr/share/igor/models/heavy_pen_substitution_matrix.csv drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/ -rw-r--r-- root/root 523 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/models/ -rw-r--r-- root/root 483313 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/models/model_marginals.txt -rw-r--r-- root/root 35291 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/models/model_parms.txt drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/ref_genome/ -rw-r--r-- root/root 102 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/ref_genome/J_gene_CDR3_anchors.csv -rw-r--r-- 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./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_5mer_D_hyperm_parms.txt -rw-r--r-- root/root 35514 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_5mer_J_hyperm_parms.txt -rw-r--r-- root/root 35517 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_5mer_V_hyperm_parms.txt -rw-r--r-- root/root 35599 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_7mer_D_hyperm_parms.txt -rw-r--r-- root/root 35597 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_7mer_J_hyperm_parms.txt -rw-r--r-- root/root 35599 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_7mer_V_hyperm_parms.txt -rw-r--r-- root/root 35684 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_9mer_D_hyperm_parms.txt -rw-r--r-- root/root 35672 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_9mer_J_hyperm_parms.txt -rw-r--r-- root/root 35679 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/ind_9mer_V_hyperm_parms.txt -rw-r--r-- root/root 48 2019-01-26 16:21 ./usr/share/igor/models/human/bcr_heavy/supplementary_models/models.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ -rw-r--r-- root/root 489 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/models/ -rw-r--r-- root/root 75679 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/models/model_marginals.txt -rw-r--r-- root/root 35883 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/models/model_parms.txt drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ref_genome/ -rw-r--r-- root/root 18 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ref_genome/J_gene_CDR3_anchors.csv -rw-r--r-- root/root 18 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ref_genome/V_gene_CDR3_anchors.csv -rw-r--r-- root/root 4983 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ref_genome/genomicJs.fasta -rw-r--r-- root/root 29702 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_alpha/ref_genome/genomicVs.fasta drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/ -rw-r--r-- root/root 488 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/models/ -rw-r--r-- root/root 114449 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/models/model_marginals.txt -rw-r--r-- root/root 38434 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/models/model_parms.txt drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/ref_genome/ -rw-r--r-- root/root 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./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_1/final_parms.txt -rw-r--r-- root/root 35 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_1/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_4/ -rw-r--r-- root/root 33314 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_4/final_marginals.txt -rw-r--r-- root/root 38249 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_4/final_parms.txt -rw-r--r-- root/root 35 2019-01-26 16:21 ./usr/share/igor/models/human/tcr_beta/supplementary_models/naive_4/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/mouse/ drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ -rw-r--r-- root/root 436 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/model.info drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/models/ -rw-r--r-- root/root 12795 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/models/model_marginals.txt -rw-r--r-- root/root 13475 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/models/model_parms.txt drwxr-xr-x root/root 0 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/ -rw-r--r-- root/root 257 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/J_gene_CDR3_anchors.csv -rw-r--r-- root/root 448 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/V_gene_CDR3_anchors.csv -rw-r--r-- root/root 48 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/genomicDs.fasta -rw-r--r-- root/root 871 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/genomicJs.fasta -rw-r--r-- root/root 10417 2019-01-26 16:21 ./usr/share/igor/models/mouse/tcr_beta/ref_genome/genomicVs.fasta lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [556 B] Get:5 copy:/<>/apt_archive ./ Packages [634 B] Fetched 2153 B in 0s (98.2 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 8680 kB of archives. After this operation, 24.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.30.1-1 [649 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB] Get:11 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http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b2 [16.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b6 [33.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.32.0 [1276 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8680 kB in 0s (33.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21640 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up t1utils (1.41-3) ... Setting up liblinux-epoll-perl (0.016-1+b2) ... Setting up diffstat (1.62-1+b1) ... Setting up libb-hooks-op-check-perl (0.22-1+b2) ... Setting up libipc-run-perl (20180523.0-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.26-1) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-3) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b5) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libtype-tiny-perl (1.004004-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 122140 Build-Time: 145 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 19 Job: igor_1.3.0+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: igor Package-Time: 176 Source-Version: 1.3.0+dfsg-1 Space: 122140 Status: successful Version: 1.3.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-11-04T00:39:05Z Build needed 00:02:56, 122140k disk space