sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | ivar 1.3.1+dfsg-7 (mipsel) Thu, 20 Oct 2022 05:24:52 +0000 | +==============================================================================+ Package: ivar Version: 1.3.1+dfsg-7 Source Version: 1.3.1+dfsg-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-bf34c336-d615-4a45-ab26-fb695b190b23' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-pq7wez/resolver-8yAaYl' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-20-0203.06-F-2022-10-20-0203.06.pdiff [12.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-20-0203.06-F-2022-10-20-0203.06.pdiff [12.2 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-20-0203.06-F-2022-10-20-0203.06.pdiff [12.6 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-20-0203.06-F-2022-10-20-0203.06.pdiff [12.2 kB] Get:6 http://localhost:3142/debian sid/main mipsel Packages [8980 kB] Fetched 9293 kB in 2s (4924 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: liblzma5 xz-utils 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 513 kB of archives. After this operation, 446 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 liblzma5 amd64 5.2.7-0.0 [181 kB] Get:2 http://localhost:3142/debian sid/main amd64 xz-utils amd64 5.2.7-0.0 [332 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 513 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15646 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.7-0.0_amd64.deb ... Unpacking liblzma5:amd64 (5.2.7-0.0) over (5.2.5-2.1) ... Setting up liblzma5:amd64 (5.2.7-0.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15646 files and directories currently installed.) Preparing to unpack .../xz-utils_5.2.7-0.0_amd64.deb ... Unpacking xz-utils (5.2.7-0.0) over (5.2.5-2.1) ... Setting up xz-utils (5.2.7-0.0) ... Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 678 kB of source archives. Get:1 http://localhost:3142/debian sid/main ivar 1.3.1+dfsg-7 (dsc) [2086 B] Get:2 http://localhost:3142/debian sid/main ivar 1.3.1+dfsg-7 (tar) [630 kB] Get:3 http://localhost:3142/debian sid/main ivar 1.3.1+dfsg-7 (diff) [45.9 kB] Fetched 678 kB in 0s (13.0 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ivar-pq7wez/ivar-1.3.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-pq7wez' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1861 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libbrotli1:mipsel libbz2-1.0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libcurl4-gnutls-dev:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mipsel libdeflate0:mipsel libelf1 libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libhogweed6:mipsel libhts-dev:mipsel libhts3:mipsel libhtscodecs2:mipsel libicu71 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.5-0:mipsel liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libnettle8:mipsel libnghttp2-14:mipsel libnsl-dev:mipsel libnsl2:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libssh2-1:mipsel libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mipsel-linux-gnu gcc-12-doc gcc-12-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel libnss-nis:mipsel libnss-nisplus:mipsel manpages-dev:mipsel libcurl4-doc:mipsel libgnutls28-dev:mipsel libidn11-dev:mipsel libkrb5-dev:mipsel libldap2-dev:mipsel librtmp-dev:mipsel libssh2-1-dev:mipsel pkg-config:mipsel gnutls-bin:mipsel krb5-doc:mipsel krb5-user:mipsel liblzma-doc:mipsel libstdc++-11-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:mipsel libarchive-cpio-perl krb5-locales:mipsel libldap-common:mipsel publicsuffix:mipsel libsasl2-modules:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils cpp-12-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-11-base:mipsel gcc-12-base:mipsel gcc-12-cross-base-mipsen gcc-12-mipsel-linux-gnu gcc-12-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libbrotli1:mipsel libbz2-1.0:mipsel libc6:mipsel libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mipsel libcrypt1:mipsel libcurl3-gnutls:mipsel libcurl4-gnutls-dev:mipsel libdb5.3:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mipsel libdeflate0:mipsel libelf1 libffi8:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mipsel libgcc-12-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libgmp10:mipsel libgnutls30:mipsel libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libhogweed6:mipsel libhts-dev:mipsel libhts3:mipsel libhtscodecs2:mipsel libicu71 libidn2-0:mipsel libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.5-0:mipsel liblocale-gettext-perl liblzma-dev:mipsel liblzma5:mipsel libmagic-mgc libmagic1 libnettle8:mipsel libnghttp2-14:mipsel libnsl-dev:mipsel libnsl2:mipsel libp11-kit0:mipsel libpipeline1 libpsl5:mipsel librtmp1:mipsel libsasl2-2:mipsel libsasl2-modules-db:mipsel libssh2-1:mipsel libssl3:mipsel libstdc++-11-dev:mipsel libstdc++-12-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 82.9 MB of archives. After this operation, 323 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1.1+b1 [85.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.0-1+b1 [1342 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-mipsel-linux-gnu amd64 2.39-7cross3 [2792 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu-base amd64 12.2.0-5cross2 [36.5 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [8093 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-mipsel-linux-gnu amd64 4:12.2.0-4 [3284 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-5cross2 [32.3 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-mipsel-cross all 2.35-3cross2 [977 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-mipsel-cross all 12.2.0-5cross2 [46.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-mipsel-cross all 12.2.0-5cross2 [105 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-mipsel-cross all 12.2.0-5cross2 [6456 B] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mipsel-cross all 12.2.0-5cross2 [267 kB] Get:30 http://localhost:3142/debian sid/main amd64 gcc-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [15.9 MB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-mipsel-linux-gnu amd64 4:12.2.0-4 [1452 B] Get:32 http://localhost:3142/debian sid/main amd64 libstdc++6-mipsel-cross all 12.2.0-5cross2 [498 kB] Get:33 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mipsel-cross all 5.19.11-1cross2 [1753 kB] Get:34 http://localhost:3142/debian sid/main amd64 libc6-dev-mipsel-cross all 2.35-3cross2 [1400 kB] Get:35 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mipsel-cross all 12.2.0-5cross2 [2034 kB] Get:36 http://localhost:3142/debian sid/main amd64 g++-12-mipsel-linux-gnu amd64 12.2.0-5cross2 [9016 kB] Get:37 http://localhost:3142/debian sid/main amd64 g++-mipsel-linux-gnu amd64 4:12.2.0-4 [1176 B] Get:38 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:39 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:40 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:41 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:42 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:47 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:50 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:51 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:52 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:53 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:54 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.10 [79.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:56 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:57 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:58 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:59 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:60 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:61 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:62 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:63 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:64 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:65 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:66 http://localhost:3142/debian sid/main amd64 debhelper all 13.10 [940 kB] Get:67 http://localhost:3142/debian sid/main mipsel gcc-11-base mipsel 11.3.0-8 [209 kB] Get:68 http://localhost:3142/debian sid/main mipsel gcc-12-base mipsel 12.2.0-5 [208 kB] Get:69 http://localhost:3142/debian sid/main mipsel libgcc-s1 mipsel 12.2.0-5 [45.7 kB] Get:70 http://localhost:3142/debian sid/main mipsel libc6 mipsel 2.35-3 [2284 kB] Get:71 http://localhost:3142/debian sid/main mipsel libatomic1 mipsel 12.2.0-5 [6708 B] Get:72 http://localhost:3142/debian sid/main mipsel libbrotli1 mipsel 1.0.9-2+b4 [285 kB] Get:73 http://localhost:3142/debian sid/main mipsel libbz2-1.0 mipsel 1.0.8-5+b1 [47.2 kB] Get:74 http://localhost:3142/debian sid/main mipsel linux-libc-dev mipsel 6.0.2-1 [1640 kB] Get:75 http://localhost:3142/debian sid/main mipsel libcrypt1 mipsel 1:4.4.28-2 [113 kB] Get:76 http://localhost:3142/debian sid/main mipsel libcrypt-dev mipsel 1:4.4.28-2 [144 kB] Get:77 http://localhost:3142/debian sid/main mipsel libcom-err2 mipsel 1.46.6~rc1-1+b1 [14.5 kB] Get:78 http://localhost:3142/debian sid/main mipsel libkrb5support0 mipsel 1.20-1+b1 [31.3 kB] Get:79 http://localhost:3142/debian sid/main mipsel libk5crypto3 mipsel 1.20-1+b1 [83.9 kB] Get:80 http://localhost:3142/debian sid/main mipsel libkeyutils1 mipsel 1.6.3-1 [15.2 kB] Get:81 http://localhost:3142/debian sid/main mipsel libssl3 mipsel 3.0.5-4 [1539 kB] Get:82 http://localhost:3142/debian sid/main mipsel libkrb5-3 mipsel 1.20-1+b1 [302 kB] Get:83 http://localhost:3142/debian sid/main mipsel libgssapi-krb5-2 mipsel 1.20-1+b1 [117 kB] Get:84 http://localhost:3142/debian sid/main mipsel libtirpc3 mipsel 1.3.3+ds-1 [74.3 kB] Get:85 http://localhost:3142/debian sid/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:86 http://localhost:3142/debian sid/main mipsel libtirpc-dev mipsel 1.3.3+ds-1 [197 kB] Get:87 http://localhost:3142/debian sid/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:88 http://localhost:3142/debian sid/main mipsel libc6-dev mipsel 2.35-3 [1404 kB] Get:89 http://localhost:3142/debian sid/main mipsel libgmp10 mipsel 2:6.2.1+dfsg1-1.1 [534 kB] Get:90 http://localhost:3142/debian sid/main mipsel libnettle8 mipsel 3.8.1-2 [306 kB] Get:91 http://localhost:3142/debian sid/main mipsel libhogweed6 mipsel 3.8.1-2 [319 kB] Get:92 http://localhost:3142/debian sid/main mipsel libunistring2 mipsel 1.0-2 [413 kB] Get:93 http://localhost:3142/debian sid/main mipsel libidn2-0 mipsel 2.3.3-1+b1 [122 kB] Get:94 http://localhost:3142/debian sid/main mipsel libffi8 mipsel 3.4.3-2 [23.4 kB] Get:95 http://localhost:3142/debian sid/main mipsel libp11-kit0 mipsel 0.24.1-1 [296 kB] Get:96 http://localhost:3142/debian sid/main mipsel libtasn1-6 mipsel 4.19.0-2 [53.9 kB] Get:97 http://localhost:3142/debian sid/main mipsel libgnutls30 mipsel 3.7.8-2 [1246 kB] Get:98 http://localhost:3142/debian sid/main mipsel libdb5.3 mipsel 5.3.28+dfsg1-0.10 [602 kB] Get:99 http://localhost:3142/debian sid/main mipsel libsasl2-modules-db mipsel 2.1.28+dfsg-8 [37.9 kB] Get:100 http://localhost:3142/debian sid/main mipsel libsasl2-2 mipsel 2.1.28+dfsg-8 [72.5 kB] Get:101 http://localhost:3142/debian sid/main mipsel libldap-2.5-0 mipsel 2.5.13+dfsg-2 [205 kB] Get:102 http://localhost:3142/debian sid/main mipsel libnghttp2-14 mipsel 1.50.0-1+b1 [69.0 kB] Get:103 http://localhost:3142/debian sid/main mipsel libpsl5 mipsel 0.21.0-1.2 [57.0 kB] Get:104 http://localhost:3142/debian sid/main mipsel zlib1g mipsel 1:1.2.11.dfsg-4.1 [88.3 kB] Get:105 http://localhost:3142/debian sid/main mipsel librtmp1 mipsel 2.4+20151223.gitfa8646d.1-2+b2 [55.7 kB] Get:106 http://localhost:3142/debian sid/main mipsel libssh2-1 mipsel 1.10.0-3+b1 [170 kB] Get:107 http://localhost:3142/debian sid/main mipsel libzstd1 mipsel 1.5.2+dfsg-1 [271 kB] Get:108 http://localhost:3142/debian sid/main mipsel libcurl3-gnutls mipsel 7.85.0-1 [341 kB] Get:109 http://localhost:3142/debian sid/main mipsel libcurl4-gnutls-dev mipsel 7.85.0-1 [472 kB] Get:110 http://localhost:3142/debian sid/main mipsel libdeflate0 mipsel 1.14-1 [49.0 kB] Get:111 http://localhost:3142/debian sid/main mipsel libdeflate-dev mipsel 1.14-1 [47.4 kB] Get:112 http://localhost:3142/debian sid/main mipsel libgomp1 mipsel 12.2.0-5 [107 kB] Get:113 http://localhost:3142/debian sid/main mipsel libgcc-11-dev mipsel 11.3.0-8 [254 kB] Get:114 http://localhost:3142/debian sid/main mipsel libhtscodecs2 mipsel 1.3.0-4 [70.5 kB] Get:115 http://localhost:3142/debian sid/main mipsel liblzma5 mipsel 5.2.7-0.0 [181 kB] Get:116 http://localhost:3142/debian sid/main mipsel libhts3 mipsel 1.16+ds-3 [403 kB] Get:117 http://localhost:3142/debian sid/main mipsel liblzma-dev mipsel 5.2.7-0.0 [244 kB] Get:118 http://localhost:3142/debian sid/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-4.1 [190 kB] Get:119 http://localhost:3142/debian sid/main mipsel libhts-dev mipsel 1.16+ds-3 [1646 kB] Get:120 http://localhost:3142/debian sid/main mipsel libstdc++6 mipsel 12.2.0-5 [541 kB] Get:121 http://localhost:3142/debian sid/main mipsel libstdc++-11-dev mipsel 11.3.0-8 [1970 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.9 MB in 2s (36.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15687 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-9_amd64.deb ... Unpacking gettext-base (0.21-9) ... 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Selecting previously unselected package libcrypt1:mipsel. Preparing to unpack .../073-libcrypt1_1%3a4.4.28-2_mipsel.deb ... Unpacking libcrypt1:mipsel (1:4.4.28-2) ... Selecting previously unselected package libcrypt-dev:mipsel. Preparing to unpack .../074-libcrypt-dev_1%3a4.4.28-2_mipsel.deb ... Unpacking libcrypt-dev:mipsel (1:4.4.28-2) ... Selecting previously unselected package libcom-err2:mipsel. Preparing to unpack .../075-libcom-err2_1.46.6~rc1-1+b1_mipsel.deb ... Unpacking libcom-err2:mipsel (1.46.6~rc1-1+b1) ... Selecting previously unselected package libkrb5support0:mipsel. Preparing to unpack .../076-libkrb5support0_1.20-1+b1_mipsel.deb ... Unpacking libkrb5support0:mipsel (1.20-1+b1) ... Selecting previously unselected package libk5crypto3:mipsel. Preparing to unpack .../077-libk5crypto3_1.20-1+b1_mipsel.deb ... Unpacking libk5crypto3:mipsel (1.20-1+b1) ... Selecting previously unselected package libkeyutils1:mipsel. 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Selecting previously unselected package libunistring2:mipsel. Preparing to unpack .../090-libunistring2_1.0-2_mipsel.deb ... Unpacking libunistring2:mipsel (1.0-2) ... Selecting previously unselected package libidn2-0:mipsel. Preparing to unpack .../091-libidn2-0_2.3.3-1+b1_mipsel.deb ... Unpacking libidn2-0:mipsel (2.3.3-1+b1) ... Selecting previously unselected package libffi8:mipsel. Preparing to unpack .../092-libffi8_3.4.3-2_mipsel.deb ... Unpacking libffi8:mipsel (3.4.3-2) ... Selecting previously unselected package libp11-kit0:mipsel. Preparing to unpack .../093-libp11-kit0_0.24.1-1_mipsel.deb ... Unpacking libp11-kit0:mipsel (0.24.1-1) ... Selecting previously unselected package libtasn1-6:mipsel. Preparing to unpack .../094-libtasn1-6_4.19.0-2_mipsel.deb ... Unpacking libtasn1-6:mipsel (4.19.0-2) ... Selecting previously unselected package libgnutls30:mipsel. Preparing to unpack .../095-libgnutls30_3.7.8-2_mipsel.deb ... Unpacking libgnutls30:mipsel (3.7.8-2) ... Selecting previously unselected package libdb5.3:mipsel. Preparing to unpack .../096-libdb5.3_5.3.28+dfsg1-0.10_mipsel.deb ... Unpacking libdb5.3:mipsel (5.3.28+dfsg1-0.10) ... Selecting previously unselected package libsasl2-modules-db:mipsel. Preparing to unpack .../097-libsasl2-modules-db_2.1.28+dfsg-8_mipsel.deb ... Unpacking libsasl2-modules-db:mipsel (2.1.28+dfsg-8) ... Selecting previously unselected package libsasl2-2:mipsel. Preparing to unpack .../098-libsasl2-2_2.1.28+dfsg-8_mipsel.deb ... Unpacking libsasl2-2:mipsel (2.1.28+dfsg-8) ... Selecting previously unselected package libldap-2.5-0:mipsel. Preparing to unpack .../099-libldap-2.5-0_2.5.13+dfsg-2_mipsel.deb ... Unpacking libldap-2.5-0:mipsel (2.5.13+dfsg-2) ... Selecting previously unselected package libnghttp2-14:mipsel. Preparing to unpack .../100-libnghttp2-14_1.50.0-1+b1_mipsel.deb ... Unpacking libnghttp2-14:mipsel (1.50.0-1+b1) ... Selecting previously unselected package libpsl5:mipsel. Preparing to unpack .../101-libpsl5_0.21.0-1.2_mipsel.deb ... Unpacking libpsl5:mipsel (0.21.0-1.2) ... Selecting previously unselected package zlib1g:mipsel. Preparing to unpack .../102-zlib1g_1%3a1.2.11.dfsg-4.1_mipsel.deb ... Unpacking zlib1g:mipsel (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package librtmp1:mipsel. Preparing to unpack .../103-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_mipsel.deb ... Unpacking librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:mipsel. Preparing to unpack .../104-libssh2-1_1.10.0-3+b1_mipsel.deb ... Unpacking libssh2-1:mipsel (1.10.0-3+b1) ... Selecting previously unselected package libzstd1:mipsel. Preparing to unpack .../105-libzstd1_1.5.2+dfsg-1_mipsel.deb ... Unpacking libzstd1:mipsel (1.5.2+dfsg-1) ... Selecting previously unselected package libcurl3-gnutls:mipsel. Preparing to unpack .../106-libcurl3-gnutls_7.85.0-1_mipsel.deb ... Unpacking libcurl3-gnutls:mipsel (7.85.0-1) ... 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Unpacking libhtscodecs2:mipsel (1.3.0-4) ... Selecting previously unselected package liblzma5:mipsel. Preparing to unpack .../113-liblzma5_5.2.7-0.0_mipsel.deb ... Unpacking liblzma5:mipsel (5.2.7-0.0) ... Selecting previously unselected package libhts3:mipsel. Preparing to unpack .../114-libhts3_1.16+ds-3_mipsel.deb ... Unpacking libhts3:mipsel (1.16+ds-3) ... Selecting previously unselected package liblzma-dev:mipsel. Preparing to unpack .../115-liblzma-dev_5.2.7-0.0_mipsel.deb ... Unpacking liblzma-dev:mipsel (5.2.7-0.0) ... Selecting previously unselected package zlib1g-dev:mipsel. Preparing to unpack .../116-zlib1g-dev_1%3a1.2.11.dfsg-4.1_mipsel.deb ... Unpacking zlib1g-dev:mipsel (1:1.2.11.dfsg-4.1) ... Selecting previously unselected package libhts-dev:mipsel. Preparing to unpack .../117-libhts-dev_1.16+ds-3_mipsel.deb ... Unpacking libhts-dev:mipsel (1.16+ds-3) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../118-libstdc++6_12.2.0-5_mipsel.deb ... Unpacking libstdc++6:mipsel (12.2.0-5) ... Selecting previously unselected package libstdc++-11-dev:mipsel. Preparing to unpack .../119-libstdc++-11-dev_11.3.0-8_mipsel.deb ... Unpacking libstdc++-11-dev:mipsel (11.3.0-8) ... Selecting previously unselected package sbuild-build-depends-main-dummy:mipsel. Preparing to unpack .../120-sbuild-build-depends-main-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.6-3) ... Setting up libicu71:amd64 (71.1-3) ... Setting up gcc-11-base:mipsel (11.3.0-8) ... Setting up libfile-which-perl (1.27-2) ... Setting up bsdextrautils (2.38.1-1.1+b1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up gcc-12-cross-base-mipsen (12.2.0-5cross2) ... Setting up linux-libc-dev:mipsel (6.0.2-1) ... Setting up libc6-mipsel-cross (2.35-3cross2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up libatomic1-mipsel-cross (12.2.0-5cross2) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-2) ... Setting up gcc-12-mipsel-linux-gnu-base:amd64 (12.2.0-5cross2) ... Setting up gcc-12-base:mipsel (12.2.0-5) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up binutils-mipsel-linux-gnu (2.39-7cross3) ... Setting up libgomp1-mipsel-cross (12.2.0-5cross2) ... Setting up autopoint (0.21-9) ... Setting up autoconf (2.71-2) ... Setting up linux-libc-dev-mipsel-cross (5.19.11-1cross2) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up cpp-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-9) ... Setting up libc6-dev-mipsel-cross (2.35-3cross2) ... Setting up libtool (2.4.7-4) ... Setting up libgcc-s1-mipsel-cross (12.2.0-5cross2) ... Setting up libgcc-12-dev-mipsel-cross (12.2.0-5cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-mipsel-linux-gnu (4:12.2.0-4) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up gcc-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up libstdc++6-mipsel-cross (12.2.0-5cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.0-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up gcc-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libstdc++-12-dev-mipsel-cross (12.2.0-5cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up debhelper (13.10) ... Setting up g++-12-mipsel-linux-gnu (12.2.0-5cross2) ... Setting up g++-mipsel-linux-gnu (4:12.2.0-4) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libgcc-s1:mipsel (12.2.0-5) ... Setting up libc6:mipsel (2.35-3) ... Setting up libffi8:mipsel (3.4.3-2) ... Setting up libtasn1-6:mipsel (4.19.0-2) ... Setting up libbz2-1.0:mipsel (1.0.8-5+b1) ... Setting up libdb5.3:mipsel (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:mipsel (12.2.0-5) ... Setting up libhtscodecs2:mipsel (1.3.0-4) ... Setting up libzstd1:mipsel (1.5.2+dfsg-1) ... Setting up libkeyutils1:mipsel (1.6.3-1) ... Setting up liblzma5:mipsel (5.2.7-0.0) ... Setting up libbrotli1:mipsel (1.0.9-2+b4) ... Setting up libnghttp2-14:mipsel (1.50.0-1+b1) ... Setting up libunistring2:mipsel (1.0-2) ... Setting up libdeflate0:mipsel (1.14-1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-4.1) ... Setting up libcrypt1:mipsel (1:4.4.28-2) ... Setting up libidn2-0:mipsel (2.3.3-1+b1) ... Setting up libcom-err2:mipsel (1.46.6~rc1-1+b1) ... Setting up libgomp1:mipsel (12.2.0-5) ... Setting up libkrb5support0:mipsel (1.20-1+b1) ... Setting up libsasl2-modules-db:mipsel (2.1.28+dfsg-8) ... Setting up libnettle8:mipsel (3.8.1-2) ... Setting up libgmp10:mipsel (2:6.2.1+dfsg1-1.1) ... Setting up libp11-kit0:mipsel (0.24.1-1) ... Setting up libatomic1:mipsel (12.2.0-5) ... Setting up libk5crypto3:mipsel (1.20-1+b1) ... Setting up libsasl2-2:mipsel (2.1.28+dfsg-8) ... Setting up liblzma-dev:mipsel (5.2.7-0.0) ... Setting up libgcc-11-dev:mipsel (11.3.0-8) ... Setting up libcrypt-dev:mipsel (1:4.4.28-2) ... Setting up libdeflate-dev:mipsel (1.14-1) ... Setting up libpsl5:mipsel (0.21.0-1.2) ... Setting up libhogweed6:mipsel (3.8.1-2) ... Setting up libssl3:mipsel (3.0.5-4) ... Setting up libgnutls30:mipsel (3.7.8-2) ... Setting up librtmp1:mipsel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libssh2-1:mipsel (1.10.0-3+b1) ... Setting up libkrb5-3:mipsel (1.20-1+b1) ... Setting up libldap-2.5-0:mipsel (2.5.13+dfsg-2) ... Setting up libgssapi-krb5-2:mipsel (1.20-1+b1) ... Setting up libtirpc3:mipsel (1.3.3+ds-1) ... Setting up libcurl3-gnutls:mipsel (7.85.0-1) ... Setting up libcurl4-gnutls-dev:mipsel (7.85.0-1) ... Setting up libtirpc-dev:mipsel (1.3.3+ds-1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libhts3:mipsel (1.16+ds-3) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.35-3) ... Setting up libstdc++-11-dev:mipsel (11.3.0-8) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-4.1) ... Setting up libhts-dev:mipsel (1.16+ds-3) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.9 g++-11_11.3.0-8 g++-12_12.2.0-5 gcc-11_11.3.0-8 gcc-12_12.2.0-5 libc6-dev_2.35-3 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-mipsel-cross_12.2.0-5cross2 libstdc++6_12.2.0-5 libstdc++6-mipsel-cross_12.2.0-5cross2 linux-libc-dev_6.0.2-1 Package versions: adduser_3.129 apt_2.5.3+b1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-1 binutils_2.39-8 binutils-common_2.39-8 binutils-mipsel-linux-gnu_2.39-7cross3 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-1.1+b1 bsdutils_1:2.38.1-1.1+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-5 cpp-12-mipsel-linux-gnu_12.2.0-5cross2 cpp-mipsel-linux-gnu_4:12.2.0-4 cross-config_2.6.18+nmu2 crossbuild-essential-mipsel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9+b1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-5 g++-12-mipsel-linux-gnu_12.2.0-5cross2 g++-mipsel-linux-gnu_4:12.2.0-4 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-5 gcc-12-base_12.2.0-5 gcc-12-cross-base-mipsen_12.2.0-5cross2 gcc-12-mipsel-linux-gnu_12.2.0-5cross2 gcc-12-mipsel-linux-gnu-base_12.2.0-5cross2 gcc-9-base_9.5.0-2+b1 gcc-mipsel-linux-gnu_4:12.2.0-4 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.39-1+b1 grep_3.8-2 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3+b1 libarchive-zip-perl_1.68-1 libasan6_11.3.0-8 libasan8_12.2.0-5 libatomic1_12.2.0-5 libatomic1-mipsel-cross_12.2.0-5cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbinutils_2.39-8 libblkid1_2.38.1-1.1+b1 libbrotli1_1.0.9-2+b4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.35-3 libc-dev-bin_2.35-3 libc6_2.35-3 libc6-dev_2.35-3 libc6-dev-mipsel-cross_2.35-3cross2 libc6-mipsel-cross_2.35-3cross2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-5 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-8 libctf0_2.39-8 libcurl3-gnutls_7.85.0-1 libcurl4-gnutls-dev_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdebian-dpkgcross-perl_2.6.18+nmu2 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.9 libelf1_0.187-4 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.29-1 libffi8_3.4.3-2 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-5 libgcc-12-dev-mipsel-cross_12.2.0-5cross2 libgcc-s1_12.2.0-5 libgcc-s1-mipsel-cross_12.2.0-5cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-5 libgomp1-mipsel-cross_12.2.0-5cross2 libgpg-error0_1.45-2 libgprofng0_2.39-8 libgssapi-krb5-2_1.20-1+b1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 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libssh2-1_1.10.0-3+b1 libssl3_3.0.5-4 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-mipsel-cross_12.2.0-5cross2 libstdc++6_12.2.0-5 libstdc++6-mipsel-cross_12.2.0-5cross2 libsub-override-perl_0.09-4 libsystemd0_251.6-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-8 libtsan2_12.2.0-5 libubsan1_12.2.0-5 libuchardet0_0.0.7-1 libudev1_251.6-1 libunistring2_1.0-2 libuuid1_2.38.1-1.1+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.2-1 linux-libc-dev-mipsel-cross_5.19.11-1cross2 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1+b1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1+b1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022e-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-1.1+b1 util-linux-extra_2.38.1-1.1+b1 xz-utils_5.2.7-0.0 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.3.1+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: 0618c6cb558643a035fef9579d83f75d42504980 630344 ivar_1.3.1+dfsg.orig.tar.xz c4df6bccddd8cb119b6d264d825097b25fa7351d 45912 ivar_1.3.1+dfsg-7.debian.tar.xz Checksums-Sha256: 1c506993b93b2f6b2fec7328e726bfb91a99a9d36c4b9e0bb174383143a2b192 630344 ivar_1.3.1+dfsg.orig.tar.xz 1b0042caa2ea053c2c345a5da13586ecddb0a2e18c6b3d6403a68d866f631390 45912 ivar_1.3.1+dfsg-7.debian.tar.xz Files: 073c189f9294476b494704928099f71f 630344 ivar_1.3.1+dfsg.orig.tar.xz 76bb18a9d09a34e18cab0fc5ad734e38 45912 ivar_1.3.1+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM+nacRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH8Hw//Zyd1sU1DHFFzJnI+1KZtXh1rjkCNWdNd 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signature: No public key dpkg-source: warning: cannot verify signature ./ivar_1.3.1+dfsg-7.dsc dpkg-source: info: extracting ivar in /<> dpkg-source: info: unpacking ivar_1.3.1+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.3.1+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying gcc-11.patch dpkg-source: info: applying gcc-11_2.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-12.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-bf34c336-d615-4a45-ab26-fb695b190b23 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.3.1+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mipsel-linux-gnu-strip... mipsel-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for mipsel-linux-gnu-g++... mipsel-linux-gnu-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether mipsel-linux-gnu-g++ accepts -g... yes checking for mipsel-linux-gnu-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of mipsel-linux-gnu-g++... none checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the compiler supports GNU C... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to enable C11 features... none needed checking whether mipsel-linux-gnu-gcc understands -c and -o together... yes checking dependency style of mipsel-linux-gnu-gcc... none checking how to run the C preprocessor... mipsel-linux-gnu-gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... mipsel-unknown-linux-gnu checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ivar.o ivar.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -mel -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc42Al7R.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o ivar.o /tmp/cc42Al7R.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'ivar.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -mel -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccK6CQBS.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o call_consensus_pileup.o /tmp/ccK6CQBS.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'call_consensus_pileup.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o alignment.o alignment.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -mel -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cct1bT6n.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o alignment.o /tmp/cct1bT6n.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'alignment.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -mel -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cclUG2Ad.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o suffix_tree.o /tmp/cclUG2Ad.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'suffix_tree.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -mel -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccilC3Dv.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o trim_primer_quality.o /tmp/ccilC3Dv.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'trim_primer_quality.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -mel -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccMVZHmP.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o remove_reads_from_amplicon.o /tmp/ccMVZHmP.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'remove_reads_from_amplicon.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -mel -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc2HcmEp.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o call_variants.o /tmp/cc2HcmEp.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'call_variants.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -mel -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cczSjaQW.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o primer_bed.o /tmp/cczSjaQW.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'primer_bed.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -mel -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccYQBPPJ.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o allele_functions.o /tmp/ccYQBPPJ.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'allele_functions.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -mel -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cctU5bP9.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o get_masked_amplicons.o /tmp/cctU5bP9.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'get_masked_amplicons.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -mel -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccyAPaK2.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o get_common_variants.o /tmp/ccyAPaK2.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'get_common_variants.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -mel -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccnPqyYV.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o parse_gff.o /tmp/ccnPqyYV.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'parse_gff.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -mel -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccP6TeVz.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o ref_seq.o /tmp/ccP6TeVz.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'ref_seq.' mipsel-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/cc1plus -quiet -v -I . -I .. -imultiarch mipsel-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -mel -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -march=mips32r2 -mfpxx -mllsc -mno-lxc1-sxc1 -mno-madd4 -mips32r2 -mabi=32 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -std=c++11 -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccbv4rMn.s GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/mipsel-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc-cross/mipsel-linux-gnu/12/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12 /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/mipsel-linux-gnu /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include/c++/12/backward /usr/lib/gcc-cross/mipsel-linux-gnu/12/include /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/include /usr/include/mipsel-linux-gnu /usr/include End of search list. GNU C++11 (Debian 12.2.0-5) version 12.2.0 (mipsel-linux-gnu) compiled by GNU C version 12.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.25-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: 43f440ec447d81d564f64fd209d2fa21 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/as -v -I . -I .. -EL -mips32r2 -O2 -g -g -mabi=32 -march=mips32r2 -mfpxx -KPIC -o interval_tree.o /tmp/ccbv4rMn.s GNU assembler version 2.39 (mipsel-linux-gnu) using BFD version (GNU Binutils for Debian) 2.39 COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'interval_tree.' mipsel-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -std=c++11 -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=mipsel-linux-gnu-g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc-cross/mipsel-linux-gnu/12/lto-wrapper Target: mipsel-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 12.2.0-5' --with-bugurl=file:///usr/share/doc/gcc-12/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-12 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libsanitizer --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-werror --enable-multilib --with-arch-32=mips32r2 --with-fp-32=xx --with-madd4=no --with-lxc1-sxc1=no --enable-targets=all --with-arch-64=mips64r2 --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=mipsel-linux-gnu --program-prefix=mipsel-linux-gnu- --includedir=/usr/mipsel-linux-gnu/include Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 12.2.0 (Debian 12.2.0-5) COMPILER_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/mipsel-linux-gnu/12/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/:/lib/mipsel-linux-gnu/:/lib/../lib/:/usr/lib/mipsel-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'ivar.' /usr/lib/gcc-cross/mipsel-linux-gnu/12/collect2 -plugin /usr/lib/gcc-cross/mipsel-linux-gnu/12/liblto_plugin.so -plugin-opt=/usr/lib/gcc-cross/mipsel-linux-gnu/12/lto-wrapper -plugin-opt=-fresolution=/tmp/cctTPKIc.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -EL -mips32r2 --as-needed -dynamic-linker /lib/ld.so.1 -melf32ltsmip -pie -o ivar /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/Scrt1.o /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/mipsel-linux-gnu/12/crtbeginS.o -L/usr/lib/gcc-cross/mipsel-linux-gnu/12 -L/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib -L/lib/mipsel-linux-gnu -L/lib/../lib -L/usr/lib/mipsel-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc-cross/mipsel-linux-gnu/12/crtendS.o /usr/lib/gcc-cross/mipsel-linux-gnu/12/../../../../mipsel-linux-gnu/lib/../lib/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-std=c++11' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-march=mips32r2' '-mfpxx' '-mllsc' '-mno-lxc1-sxc1' '-mno-madd4' '-mips32r2' '-EL' '-mabi=32' '-dumpdir' 'ivar.' make[3]: Leaving directory '/<>/src' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/ivar-1.3.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c ivar '/<>/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'ivar' in '../ivar_1.3.1+dfsg-7_mipsel.deb'. dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb'. dpkg-genbuildinfo --build=any -O../ivar_1.3.1+dfsg-7_mipsel.buildinfo dpkg-genchanges --build=any -O../ivar_1.3.1+dfsg-7_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-10-20T05:25:44Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ivar_1.3.1+dfsg-7_mipsel.changes: --------------------------------- Format: 1.8 Date: Thu, 06 Oct 2022 11:17:06 +0200 Source: ivar Binary: ivar ivar-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 1.3.1+dfsg-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ivar - functions broadly useful for viral amplicon-based sequencing Changes: ivar (1.3.1+dfsg-7) unstable; urgency=medium . [ Étienne Mollier ] * Mark gcc-12.patch as forwarded. . [ Andreas Tille ] * Packaging update Checksums-Sha1: 614c38ad88d90be7d0ff79c1b1f0b81766f1e026 1657112 ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb 53949be45214e5e8c9c28b08225532053d31a4b8 5964 ivar_1.3.1+dfsg-7_mipsel.buildinfo c5ec022083848084e089c70fa705066c0f640764 193148 ivar_1.3.1+dfsg-7_mipsel.deb Checksums-Sha256: 076fe284ef8139821b8dce398ce9ebb05710e8bd90f78c81531801fc1d10b59b 1657112 ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb bc8841a3fbfb89c86201682652ab4f823b848cf5b1cd7a48be41ed04d935e5e8 5964 ivar_1.3.1+dfsg-7_mipsel.buildinfo 6eef2fbe82d3d9865593b1b1f49ae5966c2fbbeda4023cdd017ed0b7e623252e 193148 ivar_1.3.1+dfsg-7_mipsel.deb Files: 8f33be6a69fc8efef7d7e3b26a489a7f 1657112 debug optional ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb 1e11ad287d1918ad00693613160c550b 5964 science optional ivar_1.3.1+dfsg-7_mipsel.buildinfo f64bea87fb8346ac15457de8571b409c 193148 science optional ivar_1.3.1+dfsg-7_mipsel.deb /<>/ivar_1.3.1+dfsg-7_mipsel.changes.new could not be renamed to /<>/ivar_1.3.1+dfsg-7_mipsel.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: ivar Binary: ivar ivar-dbgsym Architecture: mipsel Version: 1.3.1+dfsg-7 Checksums-Md5: 8f33be6a69fc8efef7d7e3b26a489a7f 1657112 ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb f64bea87fb8346ac15457de8571b409c 193148 ivar_1.3.1+dfsg-7_mipsel.deb Checksums-Sha1: 614c38ad88d90be7d0ff79c1b1f0b81766f1e026 1657112 ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb c5ec022083848084e089c70fa705066c0f640764 193148 ivar_1.3.1+dfsg-7_mipsel.deb Checksums-Sha256: 076fe284ef8139821b8dce398ce9ebb05710e8bd90f78c81531801fc1d10b59b 1657112 ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb 6eef2fbe82d3d9865593b1b1f49ae5966c2fbbeda4023cdd017ed0b7e623252e 193148 ivar_1.3.1+dfsg-7_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 20 Oct 2022 05:25:44 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2-1), binutils (= 2.39-8), binutils-common (= 2.39-8), binutils-x86-64-linux-gnu (= 2.39-8), bsdextrautils (= 2.38.1-1.1+b1), bsdutils (= 1:2.38.1-1.1+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-8), cpp-12 (= 12.2.0-5), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.10), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9+b1), dpkg-dev (= 1.21.9), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-5), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-8), gcc-11-base (= 11.3.0-8), gcc-12 (= 12.2.0-5), gcc-12-base (= 12.2.0-5), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.8-2), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-8), libasan8 (= 12.2.0-5), libatomic1 (= 12.2.0-5), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b1), libbinutils (= 2.39-8), libblkid1 (= 2.38.1-1.1+b1), libbrotli1 (= 1.0.9-2+b4), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.35-3), libc-dev-bin (= 2.35-3), libc6 (= 2.35-3), libc6-dev (= 2.35-3), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-5), libcom-err2 (= 1.46.6~rc1-1+b1), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-8), libctf0 (= 2.39-8), libcurl3-gnutls (= 7.85.0-1), libcurl4-gnutls-dev (= 7.85.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.10), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-4), libffi8 (= 3.4.3-2), libfile-find-rule-perl (= 0.34-2), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-8), libgcc-12-dev (= 12.2.0-5), libgcc-s1 (= 12.2.0-5), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.8-2), libgomp1 (= 12.2.0-5), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.39-8), libgssapi-krb5-2 (= 1.20-1+b1), libhogweed6 (= 3.8.1-2), libhts-dev (= 1.16+ds-3), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-5), libk5crypto3 (= 1.20-1+b1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1+b1), libkrb5support0 (= 1.20-1+b1), libldap-2.5-0 (= 2.5.13+dfsg-2), liblsan0 (= 12.2.0-5), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.2.7-0.0), liblzma5 (= 5.2.7-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1.1+b1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1+b1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-5), libpam-modules-bin (= 1.5.2-5), libpam-runtime (= 1.5.2-5), libpam0g (= 1.5.2-5), libpcre2-8-0 (= 10.40-1), libperl5.36 (= 5.36.0-4), libpipeline1 (= 1.5.6-3), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-8), libsasl2-modules-db (= 2.1.28+dfsg-8), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b2), libsmartcols1 (= 2.38.1-1.1+b1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.5-4), libstdc++-12-dev (= 12.2.0-5), libstdc++6 (= 12.2.0-5), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.6-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-8), libtsan2 (= 12.2.0-5), libubsan1 (= 12.2.0-5), libuchardet0 (= 0.0.7-1), libudev1 (= 251.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-1.1+b1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 6.0.2-1), login (= 1:4.12.3+dfsg1-1), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.11.0-1+b1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.36.0-4), perl-base (= 5.36.0-4), perl-modules-5.36 (= 5.36.0-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-6), tar (= 1.34+dfsg-1), usrmerge (= 33), util-linux (= 2.38.1-1.1+b1), util-linux-extra (= 2.38.1-1.1+b1), xz-utils (= 5.2.7-0.0), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1665047826" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ivar-dbgsym_1.3.1+dfsg-7_mipsel.deb ----------------------------------- new Debian package, version 2.0. size 1657112 bytes: control archive=536 bytes. 370 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: ivar-dbgsym Source: ivar Version: 1.3.1+dfsg-7 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1686 Depends: ivar (= 1.3.1+dfsg-7) Section: debug Priority: optional Description: debug symbols for ivar Build-Ids: d68bd403035f042788022979472d5b82ce86f3a1 drwxr-xr-x root/root 0 2022-10-06 09:17 ./ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/lib/debug/.build-id/d6/ -rw-r--r-- root/root 1715940 2022-10-06 09:17 ./usr/lib/debug/.build-id/d6/8bd403035f042788022979472d5b82ce86f3a1.debug drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-06 09:17 ./usr/share/doc/ivar-dbgsym -> ivar ivar_1.3.1+dfsg-7_mipsel.deb ---------------------------- new Debian package, version 2.0. size 193148 bytes: control archive=2040 bytes. 1168 bytes, 24 lines control 3397 bytes, 42 lines md5sums Package: ivar Version: 1.3.1+dfsg-7 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1513 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.2), libhts3 (>= 1.10), libstdc++6 (>= 11) Recommends: samtools Section: science Priority: optional Homepage: https://github.com/andersen-lab/ivar Description: functions broadly useful for viral amplicon-based sequencing iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions: . 1. trimming of primers and low-quality bases, 2. consensus calling, 3. variant calling - both iSNVs and insertions/deletions, and 4. identifying mismatches to primer sequences and excluding the corresponding reads from alignment files. drwxr-xr-x root/root 0 2022-10-06 09:17 ./ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/bin/ -rwxr-xr-x root/root 409068 2022-10-06 09:17 ./usr/bin/ivar drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/doc/ivar/ -rw-r--r-- root/root 1592 2021-02-05 19:24 ./usr/share/doc/ivar/COOKBOOK.md -rw-r--r-- root/root 6621 2021-02-05 19:24 ./usr/share/doc/ivar/MANUAL.md.gz -rw-r--r-- root/root 3456 2021-02-05 19:24 ./usr/share/doc/ivar/README -rw-r--r-- root/root 2697 2021-02-05 19:24 ./usr/share/doc/ivar/README.md.gz -rw-r--r-- root/root 278 2022-10-06 09:17 ./usr/share/doc/ivar/README.test -rw-r--r-- root/root 141 2022-10-06 09:17 ./usr/share/doc/ivar/README.test_data -rw-r--r-- root/root 1320 2022-10-06 09:17 ./usr/share/doc/ivar/changelog.Debian.gz -rw-r--r-- root/root 1851 2022-10-06 09:17 ./usr/share/doc/ivar/copyright drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ drwxr-xr-x root/root 0 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/ drwxr-xr-x root/root 0 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/db/ -rw-r--r-- root/root 407 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/db/test_ref.fa -rw-r--r-- root/root 4133 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/pair_info_2.tsv -rw-r--r-- root/root 93 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/pair_information.tsv drwxr-xr-x root/root 0 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/primer_only/ -rw-r--r-- root/root 495 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam -rw-r--r-- root/root 96 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai -rw-r--r-- root/root 441 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.bed -rw-r--r-- root/root 314 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.filtered.tsv -rw-r--r-- root/root 984 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.gap.sorted.bam -rw-r--r-- root/root 96 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai -rw-r--r-- root/root 6002 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup -rw-r--r-- root/root 481 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.gff -rw-r--r-- root/root 27 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.indel.mpileup -rw-r--r-- root/root 822 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam -rw-r--r-- root/root 96 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam.bai -rw-r--r-- root/root 1210 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.sorted.bam -rw-r--r-- root/root 96 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.sorted.bam.bai -rw-r--r-- root/root 15617 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam -rw-r--r-- root/root 1500 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam -rw-r--r-- root/root 1000 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam -rw-r--r-- root/root 10275 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test_isize.bed -rw-r--r-- root/root 1316 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test_isize.sorted.bam -rw-r--r-- root/root 447 2021-02-05 19:24 ./usr/share/doc/ivar/examples/data/test_merged.bed drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/ -rw-r--r-- root/root 141 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/README.test_data -rw-r--r-- root/root 405 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-consensus.fa -rw-r--r-- root/root 357 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-consensus.qual.txt -rw-r--r-- root/root 515910 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-filtered.tsv -rw-r--r-- root/root 82 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-getmasked.txt -rw-r--r-- root/root 828 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-removereads.sam -rw-r--r-- root/root 828 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-trim.sam -rw-r--r-- root/root 828 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-trim2.sam -rw-r--r-- root/root 515739 2022-10-06 09:17 ./usr/share/doc/ivar/examples/ref/out-variants.tsv -rw-r--r-- root/root 2040 2022-10-06 09:17 ./usr/share/doc/ivar/run-unit-test drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-06 09:17 ./usr/share/man/man1/ -rw-r--r-- root/root 741 2022-10-06 09:17 ./usr/share/man/man1/ivar.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [537 B] Get:5 copy:/<>/apt_archive ./ Packages [623 B] Fetched 2123 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libapt-pkg-perl : Depends: perlapi-5.34.0 but it is not installable libberkeleydb-perl : Depends: perlapi-5.34.0 but it is not installable libclone-perl : Depends: perlapi-5.34.0 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.34.0 but it is not installable liblist-moreutils-xs-perl : Depends: perlapi-5.34.0 but it is not installable libnet-ssleay-perl : Depends: perlapi-5.34.0 but it is not installable libnetaddr-ip-perl : Depends: perlapi-5.34.0 but it is not installable libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.34.0 but it is not installable libparams-util-perl : Depends: perlapi-5.34.0 but it is not installable libsereal-decoder-perl : Depends: perlapi-5.34.0 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.34.0 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.34.0 but it is not installable libtext-xslate-perl : Depends: perlapi-5.34.0 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libtime-moment-perl : Depends: perlapi-5.34.0 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.34.0 but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 28960 Build-Time: 29 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 12 Job: ivar_1.3.1+dfsg-7 Lintian: error Machine Architecture: amd64 Package: ivar Package-Time: 52 Source-Version: 1.3.1+dfsg-7 Space: 28960 Status: successful Version: 1.3.1+dfsg-7 -------------------------------------------------------------------------------- Finished at 2022-10-20T05:25:44Z Build needed 00:00:52, 28960k disk space