sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | ivar 1.4.2+dfsg-2 (armhf) Thu, 10 Aug 2023 06:06:22 +0000 | +==============================================================================+ Package: ivar Version: 1.4.2+dfsg-2 Source Version: 1.4.2+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-ee08b9f0-04b0-4f81-be07-f2c06bcc126b' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-ILMAYL/resolver-XKteNU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [210 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-10-0207.56-F-2023-08-10-0207.56.pdiff [8656 B] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-10-0207.56-F-2023-08-10-0207.56.pdiff [19.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-10-0207.56-F-2023-08-10-0207.56.pdiff [8656 B] Get:6 http://localhost:3142/debian sid/main armhf Packages [9137 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-10-0207.56-F-2023-08-10-0207.56.pdiff [19.6 kB] Fetched 9502 kB in 2s (4971 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 libgprofng0 libsframe1 tzdata 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6653 kB of archives. After this operation, 27.6 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 tzdata all 2023c-10 [252 kB] Get:2 http://localhost:3142/debian sid/main amd64 libgprofng0 amd64 2.41-4 [766 kB] Get:3 http://localhost:3142/debian sid/main amd64 libctf0 amd64 2.41-4 [87.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 libctf-nobfd0 amd64 2.41-4 [151 kB] Get:5 http://localhost:3142/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.41-4 [2219 kB] Get:6 http://localhost:3142/debian sid/main amd64 libbinutils amd64 2.41-4 [512 kB] Get:7 http://localhost:3142/debian sid/main amd64 binutils amd64 2.41-4 [80.0 kB] Get:8 http://localhost:3142/debian sid/main amd64 binutils-common amd64 2.41-4 [2511 kB] Get:9 http://localhost:3142/debian sid/main amd64 libsframe1 amd64 2.41-4 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6653 kB in 0s (163 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14508 files and directories currently installed.) Preparing to unpack .../0-tzdata_2023c-10_all.deb ... Unpacking tzdata (2023c-10) over (2023c-8) ... Preparing to unpack .../1-libgprofng0_2.41-4_amd64.deb ... Unpacking libgprofng0:amd64 (2.41-4) over (2.41-3) ... Preparing to unpack .../2-libctf0_2.41-4_amd64.deb ... Unpacking libctf0:amd64 (2.41-4) over (2.41-3) ... Preparing to unpack .../3-libctf-nobfd0_2.41-4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.41-4) over (2.41-3) ... Preparing to unpack .../4-binutils-x86-64-linux-gnu_2.41-4_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.41-4) over (2.41-3) ... Preparing to unpack .../5-libbinutils_2.41-4_amd64.deb ... Unpacking libbinutils:amd64 (2.41-4) over (2.41-3) ... Preparing to unpack .../6-binutils_2.41-4_amd64.deb ... Unpacking binutils (2.41-4) over (2.41-3) ... Preparing to unpack .../7-binutils-common_2.41-4_amd64.deb ... Unpacking binutils-common:amd64 (2.41-4) over (2.41-3) ... Preparing to unpack .../8-libsframe1_2.41-4_amd64.deb ... Unpacking libsframe1:amd64 (2.41-4) over (2.41-3) ... Setting up binutils-common:amd64 (2.41-4) ... Setting up libctf-nobfd0:amd64 (2.41-4) ... Setting up libsframe1:amd64 (2.41-4) ... Setting up tzdata (2023c-10) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Aug 10 06:06:35 UTC 2023. Universal Time is now: Thu Aug 10 06:06:35 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libbinutils:amd64 (2.41-4) ... Setting up libctf0:amd64 (2.41-4) ... Setting up libgprofng0:amd64 (2.41-4) ... Setting up binutils-x86-64-linux-gnu (2.41-4) ... Setting up binutils (2.41-4) ... Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 721 kB of source archives. Get:1 http://localhost:3142/debian sid/main ivar 1.4.2+dfsg-2 (dsc) [2086 B] Get:2 http://localhost:3142/debian sid/main ivar 1.4.2+dfsg-2 (tar) [673 kB] Get:3 http://localhost:3142/debian sid/main ivar 1.4.2+dfsg-2 (diff) [46.1 kB] Fetched 721 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ivar-ILMAYL/ivar-1.4.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ivar-ILMAYL' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libhts-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [726 B] Get:5 copy:/<>/apt_archive ./ Packages [769 B] Fetched 2104 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libelf1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu72 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1:armhf libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libcurl4-doc:armhf libgnutls28-dev:armhf libidn-dev:armhf libkrb5-dev:armhf libldap2-dev:armhf librtmp-dev:armhf libssh2-1-dev:armhf pkg-config:armhf gnutls-bin:armhf krb5-doc:armhf krb5-user:armhf liblzma-doc:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:armhf libarchive-cpio-perl krb5-locales:armhf libldap-common:armhf publicsuffix:armhf libsasl2-modules:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbrotli1:armhf libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcurl3-gnutls:armhf libcurl4-gnutls-dev:armhf libdb5.3:armhf libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armhf libdeflate0:armhf libelf1 libffi8:armhf libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgmp10:armhf libgnutls30:armhf libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libhogweed6:armhf libhts-dev:armhf libhts3:armhf libhtscodecs2:armhf libicu72 libidn2-0:armhf libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0:armhf liblocale-gettext-perl liblzma-dev:armhf liblzma5:armhf libmagic-mgc libmagic1 libnettle8:armhf libnghttp2-14:armhf libnsl-dev:armhf libnsl2:armhf libp11-kit0:armhf libpipeline1 libpsl5:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf libssh2-1:armhf libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtasn1-6:armhf libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunistring2:armhf libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armhf linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 242 MB of archives. After this operation, 846 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-13 [160 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-2 [1176 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.1-3 [88.5 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-3 [1386 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-13 [496 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.41-4 [3243 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-1cross1 [39.3 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-1cross1 [57.4 MB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.1.0-4 [4064 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-1cross1 [34.9 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-3cross1 [868 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 13.2.0-1cross1 [36.5 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 13.2.0-1cross1 [103 kB] Get:28 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 13.2.0-1cross1 [6736 B] Get:29 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 13.2.0-1cross1 [2410 kB] Get:30 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 13.2.0-1cross1 [545 kB] Get:31 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 13.2.0-1cross1 [967 kB] Get:32 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armhf-cross all 13.2.0-1cross1 [779 kB] Get:33 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf amd64 13.2.0-1cross1 [64.7 MB] Get:34 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:13.1.0-4 [1476 B] Get:35 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.3.7-1cross1 [1878 kB] Get:36 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.37-3cross1 [1264 kB] Get:37 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armhf-cross all 13.2.0-1cross1 [2207 kB] Get:38 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabihf amd64 13.2.0-1cross1 [62.0 MB] Get:39 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:13.1.0-4 [1184 B] Get:40 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:41 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:63 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.189-4 [174 kB] Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-13 [1300 kB] Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:69 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.4.0-2 [39.2 kB] Get:70 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-1 [39.1 kB] Get:71 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 13.2.0-1 [36.6 kB] Get:72 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-7 [2130 kB] Get:73 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.4.0-2 [1970 kB] Get:74 http://localhost:3142/debian sid/main armhf libatomic1 armhf 13.2.0-1 [7012 B] Get:75 http://localhost:3142/debian sid/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get:76 http://localhost:3142/debian sid/main armhf libbz2-1.0 armhf 1.0.8-5+b1 [44.1 kB] Get:77 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 6.4.4-3 [1758 kB] Get:78 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-2 [95.7 kB] Get:79 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-2 [125 kB] Get:80 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.47.0-2 [18.9 kB] Get:81 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20.1-2 [29.3 kB] Get:82 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20.1-2 [74.4 kB] Get:83 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-2 [7832 B] Get:84 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.10-1 [1664 kB] Get:85 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20.1-2 [287 kB] Get:86 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20.1-2 [111 kB] Get:87 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB] Get:88 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:89 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB] Get:90 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:91 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-7 [1267 kB] Get:92 http://localhost:3142/debian sid/main armhf libgmp10 armhf 2:6.3.0+dfsg-2 [509 kB] Get:93 http://localhost:3142/debian sid/main armhf libnettle8 armhf 3.9.1-2 [303 kB] Get:94 http://localhost:3142/debian sid/main armhf libhogweed6 armhf 3.9.1-2 [315 kB] Get:95 http://localhost:3142/debian sid/main armhf libunistring2 armhf 1.0-2 [409 kB] Get:96 http://localhost:3142/debian sid/main armhf libidn2-0 armhf 2.3.4-1 [138 kB] Get:97 http://localhost:3142/debian sid/main armhf libffi8 armhf 3.4.4-1 [19.5 kB] Get:98 http://localhost:3142/debian sid/main armhf libp11-kit0 armhf 0.25.0-4 [374 kB] Get:99 http://localhost:3142/debian sid/main armhf libtasn1-6 armhf 4.19.0-3 [42.8 kB] Get:100 http://localhost:3142/debian sid/main armhf libgnutls30 armhf 3.8.1-3 [1333 kB] Get:101 http://localhost:3142/debian sid/main armhf libdb5.3 armhf 5.3.28+dfsg2-2 [593 kB] Get:102 http://localhost:3142/debian sid/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-3 [17.8 kB] Get:103 http://localhost:3142/debian sid/main armhf libsasl2-2 armhf 2.1.28+dfsg1-3 [49.6 kB] Get:104 http://localhost:3142/debian sid/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get:105 http://localhost:3142/debian sid/main armhf libnghttp2-14 armhf 1.55.1-1 [61.4 kB] Get:106 http://localhost:3142/debian sid/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get:107 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.2.13.dfsg-1 [73.8 kB] Get:108 http://localhost:3142/debian sid/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get:109 http://localhost:3142/debian sid/main armhf libssh2-1 armhf 1.11.0-2 [197 kB] Get:110 http://localhost:3142/debian sid/main armhf libzstd1 armhf 1.5.5+dfsg2-1 [255 kB] Get:111 http://localhost:3142/debian sid/main armhf libcurl3-gnutls armhf 8.2.1-1 [343 kB] Get:112 http://localhost:3142/debian sid/main armhf libcurl4-gnutls-dev armhf 8.2.1-1 [450 kB] Get:113 http://localhost:3142/debian sid/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get:114 http://localhost:3142/debian sid/main armhf libdeflate-dev armhf 1.14-1 [48.7 kB] Get:115 http://localhost:3142/debian sid/main armhf libgomp1 armhf 13.2.0-1 [105 kB] Get:116 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 13.2.0-1 [592 kB] Get:117 http://localhost:3142/debian sid/main armhf libubsan1 armhf 13.2.0-1 [967 kB] Get:118 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.4.0-2 [708 kB] Get:119 http://localhost:3142/debian sid/main armhf libhtscodecs2 armhf 1.5.1-1 [62.5 kB] Get:120 http://localhost:3142/debian sid/main armhf liblzma5 armhf 5.4.1-0.2 [193 kB] Get:121 http://localhost:3142/debian sid/main armhf libhts3 armhf 1.17+ds-1 [383 kB] Get:122 http://localhost:3142/debian sid/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get:123 http://localhost:3142/debian sid/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get:124 http://localhost:3142/debian sid/main armhf libhts-dev armhf 1.17+ds-1 [1546 kB] Get:125 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.4.0-2 [1990 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 242 MB in 2s (153 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14521 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-13_amd64.deb ... Unpacking gettext-base (0.21-13) ... 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Unpacking libcom-err2:armhf (1.47.0-2) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../079-libkrb5support0_1.20.1-2_armhf.deb ... Unpacking libkrb5support0:armhf (1.20.1-2) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../080-libk5crypto3_1.20.1-2_armhf.deb ... Unpacking libk5crypto3:armhf (1.20.1-2) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../081-libkeyutils1_1.6.3-2_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-2) ... Selecting previously unselected package libssl3:armhf. Preparing to unpack .../082-libssl3_3.0.10-1_armhf.deb ... Unpacking libssl3:armhf (3.0.10-1) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../083-libkrb5-3_1.20.1-2_armhf.deb ... Unpacking libkrb5-3:armhf (1.20.1-2) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../084-libgssapi-krb5-2_1.20.1-2_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.20.1-2) ... Selecting previously unselected package libtirpc3:armhf. Preparing to unpack .../085-libtirpc3_1.3.3+ds-1_armhf.deb ... Unpacking libtirpc3:armhf (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../086-libnsl2_1.3.0-2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:armhf. Preparing to unpack .../087-libtirpc-dev_1.3.3+ds-1_armhf.deb ... Unpacking libtirpc-dev:armhf (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:armhf. Preparing to unpack .../088-libnsl-dev_1.3.0-2_armhf.deb ... Unpacking libnsl-dev:armhf (1.3.0-2) ... Selecting previously unselected package libc6-dev:armhf. Preparing to unpack .../089-libc6-dev_2.37-7_armhf.deb ... Unpacking libc6-dev:armhf (2.37-7) ... Selecting previously unselected package libgmp10:armhf. Preparing to unpack .../090-libgmp10_2%3a6.3.0+dfsg-2_armhf.deb ... Unpacking libgmp10:armhf (2:6.3.0+dfsg-2) ... Selecting previously unselected package libnettle8:armhf. Preparing to unpack .../091-libnettle8_3.9.1-2_armhf.deb ... Unpacking libnettle8:armhf (3.9.1-2) ... Selecting previously unselected package libhogweed6:armhf. Preparing to unpack .../092-libhogweed6_3.9.1-2_armhf.deb ... Unpacking libhogweed6:armhf (3.9.1-2) ... Selecting previously unselected package libunistring2:armhf. Preparing to unpack .../093-libunistring2_1.0-2_armhf.deb ... Unpacking libunistring2:armhf (1.0-2) ... Selecting previously unselected package libidn2-0:armhf. Preparing to unpack .../094-libidn2-0_2.3.4-1_armhf.deb ... Unpacking libidn2-0:armhf (2.3.4-1) ... Selecting previously unselected package libffi8:armhf. Preparing to unpack .../095-libffi8_3.4.4-1_armhf.deb ... Unpacking libffi8:armhf (3.4.4-1) ... Selecting previously unselected package libp11-kit0:armhf. Preparing to unpack .../096-libp11-kit0_0.25.0-4_armhf.deb ... Unpacking libp11-kit0:armhf (0.25.0-4) ... Selecting previously unselected package libtasn1-6:armhf. Preparing to unpack .../097-libtasn1-6_4.19.0-3_armhf.deb ... Unpacking libtasn1-6:armhf (4.19.0-3) ... Selecting previously unselected package libgnutls30:armhf. Preparing to unpack .../098-libgnutls30_3.8.1-3_armhf.deb ... Unpacking libgnutls30:armhf (3.8.1-3) ... Selecting previously unselected package libdb5.3:armhf. Preparing to unpack .../099-libdb5.3_5.3.28+dfsg2-2_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28+dfsg2-2) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../100-libsasl2-modules-db_2.1.28+dfsg1-3_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-3) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../101-libsasl2-2_2.1.28+dfsg1-3_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-3) ... Selecting previously unselected package libldap-2.5-0:armhf. 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Selecting previously unselected package libzstd1:armhf. Preparing to unpack .../108-libzstd1_1.5.5+dfsg2-1_armhf.deb ... Unpacking libzstd1:armhf (1.5.5+dfsg2-1) ... Selecting previously unselected package libcurl3-gnutls:armhf. Preparing to unpack .../109-libcurl3-gnutls_8.2.1-1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (8.2.1-1) ... Selecting previously unselected package libcurl4-gnutls-dev:armhf. Preparing to unpack .../110-libcurl4-gnutls-dev_8.2.1-1_armhf.deb ... Unpacking libcurl4-gnutls-dev:armhf (8.2.1-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../111-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libdeflate-dev:armhf. Preparing to unpack .../112-libdeflate-dev_1.14-1_armhf.deb ... Unpacking libdeflate-dev:armhf (1.14-1) ... Selecting previously unselected package libgomp1:armhf. Preparing to unpack .../113-libgomp1_13.2.0-1_armhf.deb ... 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Unpacking libhts3:armhf (1.17+ds-1) ... Selecting previously unselected package liblzma-dev:armhf. Preparing to unpack .../120-liblzma-dev_5.4.1-0.2_armhf.deb ... Unpacking liblzma-dev:armhf (5.4.1-0.2) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../121-zlib1g-dev_1%3a1.2.13.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Selecting previously unselected package libhts-dev:armhf. Preparing to unpack .../122-libhts-dev_1.17+ds-1_armhf.deb ... Unpacking libhts-dev:armhf (1.17+ds-1) ... Selecting previously unselected package libstdc++-11-dev:armhf. Preparing to unpack .../123-libstdc++-11-dev_11.4.0-2_armhf.deb ... Unpacking libstdc++-11-dev:armhf (11.4.0-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. Preparing to unpack .../124-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:armhf (11.4.0-2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libc6-armhf-cross (2.37-3cross1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.39.1-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up linux-libc-dev:armhf (6.4.4-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:armhf (13.2.0-1) ... Setting up gcc-13-cross-base (13.2.0-1cross1) ... Setting up linux-libc-dev-armhf-cross (6.3.7-1cross1) ... Setting up autopoint (0.21-13) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-arm-linux-gnueabihf-base:amd64 (13.2.0-1cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up binutils-arm-linux-gnueabihf (2.41-4) ... Setting up libelf1:amd64 (0.189-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (13.2.0-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-13) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-1cross1) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (13.2.0-1cross1) ... Setting up libc6-dev-armhf-cross (2.37-3cross1) ... Setting up libatomic1-armhf-cross (13.2.0-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (13.2.0-1cross1) ... Setting up libubsan1-armhf-cross (13.2.0-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up cpp-arm-linux-gnueabihf (4:13.1.0-4) ... Setting up libasan8-armhf-cross (13.2.0-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-1cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armhf-cross (13.2.0-1cross1) ... Setting up debhelper (13.11.4) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-1cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.1.0-4) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-1cross1) ... Setting up g++-arm-linux-gnueabihf (4:13.1.0-4) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (13.2.0-1) ... Setting up libc6:armhf (2.37-7) ... Setting up libffi8:armhf (3.4.4-1) ... Setting up libtasn1-6:armhf (4.19.0-3) ... Setting up libbz2-1.0:armhf (1.0.8-5+b1) ... Setting up libdb5.3:armhf (5.3.28+dfsg2-2) ... Setting up libstdc++6:armhf (13.2.0-1) ... Setting up libhtscodecs2:armhf (1.5.1-1) ... Setting up libzstd1:armhf (1.5.5+dfsg2-1) ... Setting up libkeyutils1:armhf (1.6.3-2) ... Setting up liblzma5:armhf (5.4.1-0.2) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libssl3:armhf (3.0.10-1) ... Setting up libnghttp2-14:armhf (1.55.1-1) ... Setting up libunistring2:armhf (1.0-2) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up zlib1g:armhf (1:1.2.13.dfsg-1) ... Setting up libcrypt1:armhf (1:4.4.36-2) ... Setting up libidn2-0:armhf (2.3.4-1) ... Setting up libcom-err2:armhf (1.47.0-2) ... Setting up libgomp1:armhf (13.2.0-1) ... Setting up libasan6:armhf (11.4.0-2) ... Setting up libkrb5support0:armhf (1.20.1-2) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-3) ... Setting up libnettle8:armhf (3.9.1-2) ... Setting up libgmp10:armhf (2:6.3.0+dfsg-2) ... Setting up libp11-kit0:armhf (0.25.0-4) ... Setting up libatomic1:armhf (13.2.0-1) ... Setting up libk5crypto3:armhf (1.20.1-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libubsan1:armhf (13.2.0-1) ... Setting up libgcc-11-dev:armhf (11.4.0-2) ... Setting up libcrypt-dev:armhf (1:4.4.36-2) ... Setting up libssh2-1:armhf (1.11.0-2) ... Setting up libkrb5-3:armhf (1.20.1-2) ... Setting up libdeflate-dev:armhf (1.14-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libhogweed6:armhf (3.9.1-2) ... Setting up libgnutls30:armhf (3.8.1-3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:armhf (1.20.1-2) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libcurl3-gnutls:armhf (8.2.1-1) ... Setting up libcurl4-gnutls-dev:armhf (8.2.1-1) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.37-7) ... Setting up libhts3:armhf (1.17+ds-1) ... Setting up libstdc++-11-dev:armhf (11.4.0-2) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libhts-dev:armhf (1.17+ds-1) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) amd64 (x86_64) Toolchain package versions: binutils_2.41-4 dpkg-dev_1.21.22 g++-11_11.4.0-2 g++-13_13.2.0-1 gcc-11_11.4.0-2 gcc-13_13.2.0-1 libc6-dev_2.37-7 libstdc++-11-dev_11.4.0-2 libstdc++-13-dev_13.2.0-1 libstdc++-13-dev-armhf-cross_13.2.0-1cross1 libstdc++6_13.2.0-1 libstdc++6-armhf-cross_13.2.0-1cross1 linux-libc-dev_6.4.4-3 Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-4 binutils-arm-linux-gnueabihf_2.41-4 binutils-common_2.41-4 binutils-x86-64-linux-gnu_2.41-4 bsdextrautils_2.39.1-3 bsdutils_1:2.39.1-3 build-essential_12.10 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:13.1.0-4 cpp-11_11.4.0-2 cpp-13_13.2.0-1 cpp-13-arm-linux-gnueabihf_13.2.0-1cross1 cpp-arm-linux-gnueabihf_4:13.1.0-4 cross-config_2.6.20 crossbuild-essential-armhf_12.10 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.4 debianutils_5.8-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.1.0-4 g++-11_11.4.0-2 g++-13_13.2.0-1 g++-13-arm-linux-gnueabihf_13.2.0-1cross1 g++-arm-linux-gnueabihf_4:13.1.0-4 gcc_4:13.1.0-4 gcc-11_11.4.0-2 gcc-11-base_11.4.0-2 gcc-12-base_12.3.0-7 gcc-13_13.2.0-1 gcc-13-arm-linux-gnueabihf_13.2.0-1cross1 gcc-13-arm-linux-gnueabihf-base_13.2.0-1cross1 gcc-13-base_13.2.0-1 gcc-13-cross-base_13.2.0-1cross1 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabihf_4:13.1.0-4 gettext_0.21-13 gettext-base_0.21-13 gpgv_2.2.40-1.1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan6_11.4.0-2 libasan8_13.2.0-1 libasan8-armhf-cross_13.2.0-1cross1 libatomic1_13.2.0-1 libatomic1-armhf-cross_13.2.0-1cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4 libblkid1_2.39.1-3 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-7 libc-dev-bin_2.37-7 libc6_2.37-7 libc6-armhf-cross_2.37-3cross1 libc6-dev_2.37-7 libc6-dev-armhf-cross_2.37-3cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.2.0-1 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-4 libctf0_2.41-4 libcurl3-gnutls_8.2.1-1 libcurl4-gnutls-dev_8.2.1-1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.22 libelf1_0.189-4 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-2 libgcc-13-dev_13.2.0-1 libgcc-13-dev-armhf-cross_13.2.0-1cross1 libgcc-s1_13.2.0-1 libgcc-s1-armhf-cross_13.2.0-1cross1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-3 libgomp1_13.2.0-1 libgomp1-armhf-cross_13.2.0-1cross1 libgpg-error0_1.46-1 libgprofng0_2.41-4 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libhts-dev_1.17+ds-1 libhts3_1.17+ds-1 libhtscodecs2_1.5.1-1 libhwasan0_13.2.0-1 libicu72_72.1-3 libidn2-0_2.3.4-1 libio-string-perl_1.08-4 libisl23_0.26-3 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libssh2-1_1.11.0-2 libssl3_3.0.10-1 libstdc++-11-dev_11.4.0-2 libstdc++-13-dev_13.2.0-1 libstdc++-13-dev-armhf-cross_13.2.0-1cross1 libstdc++6_13.2.0-1 libstdc++6-armhf-cross_13.2.0-1cross1 libsub-override-perl_0.09-4 libsystemd0_254-1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libtsan0_11.4.0-2 libtsan2_13.2.0-1 libubsan1_13.2.0-1 libubsan1-armhf-cross_13.2.0-1cross1 libuchardet0_0.0.7-1 libudev1_254-1 libunistring2_1.0-2 libuuid1_2.39.1-3 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.4.4-3 linux-libc-dev-armhf-cross_6.3.7-1cross1 login_1:4.13+dfsg1-1+b1 logsave_1.47.0-2 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230730-1 mount_2.39.1-3 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.39.1-3 util-linux-extra_2.39.1-3 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.4.2+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: 8424d860241b5fdb7cfbb71d8d8d85d6d9162962 672788 ivar_1.4.2+dfsg.orig.tar.xz 60864a03e9005465b34317bd06fef90160158af8 46116 ivar_1.4.2+dfsg-2.debian.tar.xz Checksums-Sha256: 87fbc667080e95823734eeca0dfcec058ff18f1aca7aff89de7a82217a7d2968 672788 ivar_1.4.2+dfsg.orig.tar.xz 0111a5f982809c03f3e84efd205aa14c3177a1333ba7607582ff7e000bb7725f 46116 ivar_1.4.2+dfsg-2.debian.tar.xz Files: d2c0875cd8d094e11207d0d185099282 672788 ivar_1.4.2+dfsg.orig.tar.xz 16c39452cf7ff211559820070906abdd 46116 ivar_1.4.2+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmTR2H0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFe5Q/+NbrC80+T1+yeAWItsb1ueyk2zkCGf5lX 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dpkg-source: info: extracting ivar in /<> dpkg-source: info: unpacking ivar_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying gcc-13-2.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-ee08b9f0-04b0-4f81-be07-f2c06bcc126b SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f data/db/test_ref.fa.fai data/test.gap.fa data/test.gap.qual.txt data/test.indel.tsv data/test.masked_primer_indices.txt data/test.trimmed.masked.bam data/test.trimmed.masked.bam.bai data/test.trimmed.sorted.bam.bai data/test.unmapped.sorted.bam.bai make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabihf-g++... none checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabihf-gcc... none checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking for GNU libc compatible malloc... (cached) yes checking for GNU libc compatible realloc... (cached) yes checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cca3CocP.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o ivar.o /tmp/cca3CocP.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc1SAanO.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o call_consensus_pileup.o /tmp/cc1SAanO.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'call_consensus_pileup.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccAuN7i4.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o alignment.o /tmp/ccAuN7i4.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'alignment.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cccqbhpg.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o suffix_tree.o /tmp/cccqbhpg.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'suffix_tree.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccn3bTY9.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o trim_primer_quality.o /tmp/ccn3bTY9.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'trim_primer_quality.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc6fhpga.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o remove_reads_from_amplicon.o /tmp/cc6fhpga.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'remove_reads_from_amplicon.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc9VFxAg.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o call_variants.o /tmp/cc9VFxAg.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'call_variants.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/cc7pBFEw.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o primer_bed.o /tmp/cc7pBFEw.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'primer_bed.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccpuCrat.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o allele_functions.o /tmp/ccpuCrat.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'allele_functions.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccu6Cx9N.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o get_masked_amplicons.o /tmp/ccu6Cx9N.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'get_masked_amplicons.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccileXXB.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o get_common_variants.o /tmp/ccileXXB.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'get_common_variants.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccKTlvwb.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 In file included from /usr/arm-linux-gnueabihf/include/c++/13/regex:59, from parse_gff.h:6, from parse_gff.cpp:1: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {gff3_feature}; _Tp = gff3_feature; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const gff3_feature&}; _Tp = gff3_feature; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/regex:57: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = gff3_feature; _Alloc = std::allocator]’, inlined from ‘std::vector gff3::query_features(uint64_t, std::string)’ at parse_gff.cpp:151:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {gff3_feature}; _Tp = gff3_feature; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = gff3_feature; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘int gff3::read_file(std::string)’ at parse_gff.cpp:139:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o parse_gff.o /tmp/ccKTlvwb.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'parse_gff.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccBdV4NX.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o ref_seq.o /tmp/ccBdV4NX.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ref_seq.' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/cc1plus -quiet -v -I . -I .. -imultilib . -imultiarch arm-linux-gnueabihf -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mfloat-abi=hard -mtls-dialect=gnu -mthumb -mlibarch=armv7-a+fp -march=armv7-a+fp -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/<>=. -fstack-protector-strong -o /tmp/ccK6BYfh.s GNU C++17 (Debian 13.2.0-1) version 13.2.0 (arm-linux-gnueabihf) compiled by GNU C version 13.2.0, GMP version 6.2.1, MPFR version 4.2.0, MPC version 1.3.1, isl version isl-0.26-GMP warning: GMP header version 6.2.1 differs from library version 6.3.0. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed/arm-linux-gnueabihf" ignoring nonexistent directory "/usr/lib/gcc-cross/arm-linux-gnueabihf/13/include-fixed" #include "..." search starts here: #include <...> search starts here: . .. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13 /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/arm-linux-gnueabihf/. /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include/c++/13/backward /usr/lib/gcc-cross/arm-linux-gnueabihf/13/include /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/include /usr/include/arm-linux-gnueabihf /usr/include End of search list. Compiler executable checksum: 541f0a17996abc9420af6a77898b4b13 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/as -v -I . -I .. -march=armv7-a+fp -mfloat-abi=hard -meabi=5 -o interval_tree.o /tmp/ccK6BYfh.s GNU assembler version 2.41 (arm-linux-gnueabihf) using BFD version (GNU Binutils for Debian) 2.41 COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'interval_tree.' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=arm-linux-gnueabihf-g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/lto-wrapper Target: arm-linux-gnueabihf Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-1' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --without-target-system-zlib --enable-multiarch --disable-sjlj-exceptions --with-arch=armv7-a+fp --with-float=hard --with-mode=thumb --disable-werror --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=arm-linux-gnueabihf --program-prefix=arm-linux-gnueabihf- --includedir=/usr/arm-linux-gnueabihf/include --with-build-config=bootstrap-lto-lean --enable-link-serialization=2 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Debian 13.2.0-1) COMPILER_PATH=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/:/usr/libexec/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/bin/ LIBRARY_PATH=/usr/lib/gcc-cross/arm-linux-gnueabihf/13/:/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/:/lib/arm-linux-gnueabihf/:/lib/:/usr/lib/arm-linux-gnueabihf/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/collect2 -plugin /usr/libexec/gcc-cross/arm-linux-gnueabihf/13/liblto_plugin.so -plugin-opt=/usr/libexec/gcc-cross/arm-linux-gnueabihf/13/lto-wrapper -plugin-opt=-fresolution=/tmp/cc9i8L1i.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -dynamic-linker /lib/ld-linux-armhf.so.3 -X --hash-style=gnu --as-needed -m armelf_linux_eabi -pie -o ivar /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/Scrt1.o /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/13/crtbeginS.o -L/usr/lib/gcc-cross/arm-linux-gnueabihf/13 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc-cross/arm-linux-gnueabihf/13/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/13/../../../../arm-linux-gnueabihf/lib/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/<>=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mfloat-abi=hard' '-mtls-dialect=gnu' '-mthumb' '-mlibarch=armv7-a+fp' '-march=armv7-a+fp' '-dumpdir' 'ivar.' make[3]: Leaving directory '/<>/src' Making all in tests make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/tests' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules execute_before_dh_auto_install make[1]: Entering directory '/<>' chmod -x /<>/data/primer_pair_test/test_primer_pair.bed make[1]: Leaving directory '/<>' dh_auto_install -a make -j1 install DESTDIR=/<>/ivar-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /usr/bin/install -c ivar '/<>/debian/tmp/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in tests make[2]: Entering directory '/<>/tests' make[3]: Entering directory '/<>/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/tests' make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/ivar/usr/bin/ivar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'ivar' in '../ivar_1.4.2+dfsg-2_armhf.deb'. dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.2+dfsg-2_armhf.deb'. dpkg-genbuildinfo --build=any -O../ivar_1.4.2+dfsg-2_armhf.buildinfo dpkg-genchanges --build=any -O../ivar_1.4.2+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-10T06:07:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ivar_1.4.2+dfsg-2_armhf.changes: -------------------------------- Format: 1.8 Date: Tue, 08 Aug 2023 07:50:30 +0200 Source: ivar Binary: ivar ivar-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.4.2+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ivar - functions broadly useful for viral amplicon-based sequencing Closes: 1043025 Changes: ivar (1.4.2+dfsg-2) unstable; urgency=medium . [ Adrian Bunk ] * Remove -std=c++11 to fix autopkgtest failure with gcc 13 Closes: #1043025 Checksums-Sha1: 98da36c44b5e6223c37bfc1e400635e7bca9fcd4 1742948 ivar-dbgsym_1.4.2+dfsg-2_armhf.deb 50de63b23bde21611ae488e3c36073dde2f4bf8b 5916 ivar_1.4.2+dfsg-2_armhf.buildinfo 61cd2f40700f963e8c07117c1c1ffd598bb4e98f 192444 ivar_1.4.2+dfsg-2_armhf.deb Checksums-Sha256: bc775f991ba1d79c55b057c0072283aa4dba7a1e28f33bc398263515a1a1c7ba 1742948 ivar-dbgsym_1.4.2+dfsg-2_armhf.deb 253dec277ea9ce0d2903640fedb59024235332e5adde516232b0fa792f276110 5916 ivar_1.4.2+dfsg-2_armhf.buildinfo 2e4e356d2ac266b7245d6537c207885cb8dbe2228dcdd3ccd8042ccd47d59e42 192444 ivar_1.4.2+dfsg-2_armhf.deb Files: c8b5183ed57f4f6cfaa2fa732654f518 1742948 debug optional ivar-dbgsym_1.4.2+dfsg-2_armhf.deb 12b40e84a6053fa7a41db80e8e55e799 5916 science optional ivar_1.4.2+dfsg-2_armhf.buildinfo c782e19201b6fafcd3c88d3e0ed3d60e 192444 science optional ivar_1.4.2+dfsg-2_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: ivar Binary: ivar ivar-dbgsym Architecture: armhf Version: 1.4.2+dfsg-2 Checksums-Md5: c8b5183ed57f4f6cfaa2fa732654f518 1742948 ivar-dbgsym_1.4.2+dfsg-2_armhf.deb c782e19201b6fafcd3c88d3e0ed3d60e 192444 ivar_1.4.2+dfsg-2_armhf.deb Checksums-Sha1: 98da36c44b5e6223c37bfc1e400635e7bca9fcd4 1742948 ivar-dbgsym_1.4.2+dfsg-2_armhf.deb 61cd2f40700f963e8c07117c1c1ffd598bb4e98f 192444 ivar_1.4.2+dfsg-2_armhf.deb Checksums-Sha256: bc775f991ba1d79c55b057c0072283aa4dba7a1e28f33bc398263515a1a1c7ba 1742948 ivar-dbgsym_1.4.2+dfsg-2_armhf.deb 2e4e356d2ac266b7245d6537c207885cb8dbe2228dcdd3ccd8042ccd47d59e42 192444 ivar_1.4.2+dfsg-2_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 10 Aug 2023 06:07:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-4), binutils-common (= 2.41-4), binutils-x86-64-linux-gnu (= 2.41-4), bsdextrautils (= 2.39.1-3), bsdutils (= 1:2.39.1-3), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:13.1.0-4), cpp-11 (= 11.4.0-2), cpp-13 (= 13.2.0-1), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.8-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.1.0-4), g++-13 (= 13.2.0-1), gcc (= 4:13.1.0-4), gcc-11 (= 11.4.0-2), gcc-11-base (= 11.4.0-2), gcc-13 (= 13.2.0-1), gcc-13-base (= 13.2.0-1), gettext (= 0.21-13), gettext-base (= 0.21-13), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-2), libasan8 (= 13.2.0-1), libatomic1 (= 13.2.0-1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4), libblkid1 (= 2.39.1-3), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-7), libc-dev-bin (= 2.37-7), libc6 (= 2.37-7), libc6-dev (= 2.37-7), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-1), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4), libctf0 (= 2.41-4), libcurl3-gnutls (= 8.2.1-1), libcurl4-gnutls-dev (= 8.2.1-1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.22), libelf1 (= 0.189-4), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-2), libgcc-13-dev (= 13.2.0-1), libgcc-s1 (= 13.2.0-1), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgnutls30 (= 3.8.1-3), libgomp1 (= 13.2.0-1), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.41-4), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.17+ds-1), libhts3 (= 1.17+ds-1), libhtscodecs2 (= 1.5.1-1), libhwasan0 (= 13.2.0-1), libicu72 (= 72.1-3), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 13.2.0-1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.2), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-3), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.0-4), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-4), libsmartcols1 (= 2.39.1-3), libssh2-1 (= 1.11.0-2), libssl3 (= 3.0.10-1), libstdc++-13-dev (= 13.2.0-1), libstdc++6 (= 13.2.0-1), libsub-override-perl (= 0.09-4), libsystemd0 (= 254-1), libtasn1-6 (= 4.19.0-3), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-2), libtsan2 (= 13.2.0-1), libubsan1 (= 13.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 254-1), libunistring2 (= 1.0-2), libuuid1 (= 2.39.1-3), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-1), linux-libc-dev (= 6.4.4-3), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.39.1-3), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1691473830" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ivar-dbgsym_1.4.2+dfsg-2_armhf.deb ---------------------------------- new Debian package, version 2.0. size 1742948 bytes: control archive=536 bytes. 369 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: ivar-dbgsym Source: ivar Version: 1.4.2+dfsg-2 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1776 Depends: ivar (= 1.4.2+dfsg-2) Section: debug Priority: optional Description: debug symbols for ivar Build-Ids: 90d56262ed12359cfe84b3f2dfdf3cbf6ad4a573 drwxr-xr-x root/root 0 2023-08-08 05:50 ./ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/lib/debug/.build-id/90/ -rw-r--r-- root/root 1807436 2023-08-08 05:50 ./usr/lib/debug/.build-id/90/d56262ed12359cfe84b3f2dfdf3cbf6ad4a573.debug drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-08-08 05:50 ./usr/share/doc/ivar-dbgsym -> ivar ivar_1.4.2+dfsg-2_armhf.deb --------------------------- new Debian package, version 2.0. size 192444 bytes: control archive=2140 bytes. 1169 bytes, 24 lines control 3732 bytes, 45 lines md5sums Package: ivar Version: 1.4.2+dfsg-2 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1349 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libhts3 (>= 1.17), libstdc++6 (>= 13.1) Recommends: samtools Section: science Priority: optional Homepage: https://github.com/andersen-lab/ivar Description: functions broadly useful for viral amplicon-based sequencing iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions: . 1. trimming of primers and low-quality bases, 2. consensus calling, 3. variant calling - both iSNVs and insertions/deletions, and 4. identifying mismatches to primer sequences and excluding the corresponding reads from alignment files. drwxr-xr-x root/root 0 2023-08-08 05:50 ./ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/bin/ -rwxr-xr-x root/root 219148 2023-08-08 05:50 ./usr/bin/ivar drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/doc/ivar/ -rw-r--r-- root/root 1592 2023-03-28 23:10 ./usr/share/doc/ivar/COOKBOOK.md -rw-r--r-- root/root 6802 2023-03-28 23:10 ./usr/share/doc/ivar/MANUAL.md.gz -rw-r--r-- root/root 3456 2023-03-28 23:10 ./usr/share/doc/ivar/README -rw-r--r-- root/root 2697 2023-03-28 23:10 ./usr/share/doc/ivar/README.md.gz -rw-r--r-- root/root 278 2023-08-08 05:50 ./usr/share/doc/ivar/README.test -rw-r--r-- root/root 141 2023-08-08 05:50 ./usr/share/doc/ivar/README.test_data -rw-r--r-- root/root 1537 2023-08-08 05:50 ./usr/share/doc/ivar/changelog.Debian.gz -rw-r--r-- root/root 1851 2023-08-08 05:50 ./usr/share/doc/ivar/copyright drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ drwxr-xr-x root/root 0 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/ drwxr-xr-x root/root 0 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/db/ -rw-r--r-- root/root 407 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/db/test_ref.fa -rw-r--r-- root/root 4133 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/pair_info_2.tsv -rw-r--r-- root/root 93 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/pair_information.tsv drwxr-xr-x root/root 0 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_only/ -rw-r--r-- root/root 495 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam -rw-r--r-- root/root 96 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai drwxr-xr-x root/root 0 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_pair_test/ -rw-r--r-- root/root 769 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed -rw-r--r-- root/root 284 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.tsv -rw-r--r-- root/root 731 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.untrimmed.bam -rw-r--r-- root/root 441 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test.bed -rw-r--r-- root/root 314 2023-03-28 23:10 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./usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam -rw-r--r-- root/root 1500 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam -rw-r--r-- root/root 1000 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam -rw-r--r-- root/root 10275 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test_isize.bed -rw-r--r-- root/root 1316 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test_isize.sorted.bam -rw-r--r-- root/root 447 2023-03-28 23:10 ./usr/share/doc/ivar/examples/data/test_merged.bed drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/ -rw-r--r-- root/root 141 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/README.test_data -rw-r--r-- root/root 405 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-consensus.fa -rw-r--r-- root/root 357 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-consensus.qual.txt -rw-r--r-- root/root 515910 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-filtered.tsv -rw-r--r-- root/root 82 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-getmasked.txt -rw-r--r-- root/root 413 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-removereads.sam -rw-r--r-- root/root 413 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-trim.sam -rw-r--r-- root/root 828 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-trim2.sam -rw-r--r-- root/root 532543 2023-08-08 05:50 ./usr/share/doc/ivar/examples/ref/out-variants.tsv -rw-r--r-- root/root 2040 2023-08-08 05:50 ./usr/share/doc/ivar/run-unit-test drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/man/ drwxr-xr-x root/root 0 2023-08-08 05:50 ./usr/share/man/man1/ -rw-r--r-- root/root 741 2023-08-08 05:50 ./usr/share/man/man1/ivar.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1308 B] Get:5 copy:/<>/apt_archive ./ Packages [1387 B] Fetched 3310 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.4 MB of additional disk space will be used. 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libnet-http-perl all 6.22-1 [25.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.72-1 [187 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.38-1 [60.0 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (80.7 MB/s) Selecting previously unselected package netbase. 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Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.42.0-1) ... 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Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.57-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... Processing triggers for man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 29564 Build-Time: 33 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 14 Job: ivar_1.4.2+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: ivar Package-Time: 61 Source-Version: 1.4.2+dfsg-2 Space: 29564 Status: successful Version: 1.4.2+dfsg-2 -------------------------------------------------------------------------------- Finished at 2023-08-10T06:07:23Z Build needed 00:01:01, 29564k disk space