sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | jellyfish1 1.1.11-10 (ppc64el) Tue, 24 Feb 2026 20:39:42 +0000 | +==============================================================================+ Package: jellyfish1 Version: 1.1.11-10 Source Version: 1.1.11-10 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-c993ed34-660d-4fd8-b18c-6a424264b58e' with '<>' I: NOTICE: Log filtering will replace 'build/jellyfish1-PtTj30/resolver-bjBUks' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [187 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2026-02-24-1410.01-F-2026-02-24-1410.01.pdiff [646 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2026-02-24-1410.01-F-2026-02-24-0200.05.pdiff [96.8 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2026-02-24-1410.01-F-2026-02-24-1410.01.pdiff [646 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2026-02-24-1410.01-F-2026-02-24-0200.05.pdiff [101 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2026-02-24-1410.01-F-2026-02-24-0200.05.pdiff [96.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2026-02-24-1410.01-F-2026-02-24-0200.05.pdiff [101 kB] Get:8 http://localhost:3142/debian unstable/main ppc64el Packages [10.0 MB] Fetched 10.6 MB in 3s (3593 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-15 cpp-15-x86-64-linux-gnu g++-15 g++-15-x86-64-linux-gnu gcc-15 gcc-15-base gcc-15-x86-64-linux-gnu libasan8 libatomic1 libcc1-0 libgcc-15-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 liblz4-1 libquadmath0 libstdc++-15-dev libstdc++6 libtsan2 libubsan1 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 64.8 MB of archives. After this operation, 10.2 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 15.2.0-14 [42.6 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 15.2.0-14 [140 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 15.2.0-14 [26.5 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 15.2.0-14 [9536 B] Get:5 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 15.2.0-14 [2779 kB] Get:6 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 15.2.0-14 [1249 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 15.2.0-14 [2491 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 15.2.0-14 [1108 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 15.2.0-14 [1538 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 15.2.0-14 [145 kB] Get:11 http://localhost:3142/debian unstable/main amd64 gcc-15-base amd64 15.2.0-14 [55.0 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 15.2.0-14 [736 kB] Get:13 http://localhost:3142/debian unstable/main amd64 gcc-15 amd64 15.2.0-14 [536 kB] Get:14 http://localhost:3142/debian unstable/main amd64 g++-15 amd64 15.2.0-14 [26.1 kB] Get:15 http://localhost:3142/debian unstable/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-14 [13.2 MB] Get:16 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev amd64 15.2.0-14 [2446 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev amd64 15.2.0-14 [2718 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-14 [23.4 MB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-14 [12.1 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-15 amd64 15.2.0-14 [1276 B] Get:21 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 15.2.0-14 [71.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 liblz4-1 amd64 1.10.0-7 [70.6 kB] Fetched 64.8 MB in 0s (211 MB/s) (Reading database ... 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Setting up cpp-15 (15.2.0-14) ... Setting up libhwasan0:amd64 (15.2.0-14) ... Setting up libasan8:amd64 (15.2.0-14) ... Setting up libtsan2:amd64 (15.2.0-14) ... Setting up libcc1-0:amd64 (15.2.0-14) ... Setting up liblsan0:amd64 (15.2.0-14) ... Setting up libitm1:amd64 (15.2.0-14) ... Setting up libgcc-15-dev:amd64 (15.2.0-14) ... Setting up gcc-15-x86-64-linux-gnu (15.2.0-14) ... Setting up gcc-15 (15.2.0-14) ... Setting up libstdc++-15-dev:amd64 (15.2.0-14) ... Setting up g++-15-x86-64-linux-gnu (15.2.0-14) ... Setting up g++-15 (15.2.0-14) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'jellyfish1' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/jellyfish1.git Please use: git clone https://salsa.debian.org/med-team/jellyfish1.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1076 kB of source archives. Get:1 http://localhost:3142/debian unstable/main jellyfish1 1.1.11-10 (dsc) [2174 B] Get:2 http://localhost:3142/debian unstable/main jellyfish1 1.1.11-10 (tar) [1067 kB] Get:3 http://localhost:3142/debian unstable/main jellyfish1 1.1.11-10 (diff) [6848 B] Fetched 1076 kB in 1s (782 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/jellyfish1-PtTj30/jellyfish1-1.1.11' with '<>' I: NOTICE: Log filtering will replace 'build/jellyfish1-PtTj30' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [720 B] Get:5 copy:/<>/apt_archive ./ Packages [765 B] Fetched 2094 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-15-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-15-base:ppc64el gcc-15-cross-base gcc-15-powerpc64le-linux-gnu gcc-15-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc-gconv-modules-extra:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:ppc64el libgcc-15-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgomp1:ppc64el libgomp1-ppc64el-cross libitm1:ppc64el libitm1-ppc64el-cross liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libstdc++-15-dev:ppc64el libstdc++-15-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-ppc64el-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el manpages-dev:ppc64el libstdc++-15-doc:ppc64el libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:ppc64el libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils cpp-15-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-15-base:ppc64el gcc-15-cross-base gcc-15-powerpc64le-linux-gnu gcc-15-powerpc64le-linux-gnu-base gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:ppc64el libasan8-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libc-gconv-modules-extra:ppc64el libc6:ppc64el libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-15-dev:ppc64el libgcc-15-dev-ppc64el-cross libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgomp1:ppc64el libgomp1-ppc64el-cross libitm1:ppc64el libitm1-ppc64el-cross liblsan0:ppc64el liblsan0-ppc64el-cross libmagic-mgc libmagic1t64 libpipeline1 libquadmath0:ppc64el libquadmath0-ppc64el-cross libstdc++-15-dev:ppc64el libstdc++-15-dev-ppc64el-cross libstdc++6:ppc64el libstdc++6-ppc64el-cross libtool libtsan2:ppc64el libtsan2-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring5 libxml2-16 linux-libc-dev-ppc64el-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:ppc64el sensible-utils 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 90.9 MB of archives. After this operation, 385 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5+b1 [338 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5+b1 [110 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5+b1 [43.8 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b1 [68.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-10 [1194 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.3-4 [98.9 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:17 http://localhost:3142/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.46-2 [1565 kB] Get:18 http://localhost:3142/debian unstable/main amd64 gcc-15-powerpc64le-linux-gnu-base amd64 15.2.0-13cross1 [55.1 kB] Get:19 http://localhost:3142/debian unstable/main amd64 cpp-15-powerpc64le-linux-gnu amd64 15.2.0-13cross1 [11.0 MB] Get:20 http://localhost:3142/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:15.2.0-5 [5336 B] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-13cross1 [50.4 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libc6-ppc64el-cross all 2.42-12cross1 [1462 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 15.2.0-13cross1 [52.4 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libgomp1-ppc64el-cross all 15.2.0-13cross1 [141 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libitm1-ppc64el-cross all 15.2.0-13cross1 [28.5 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libatomic1-ppc64el-cross all 15.2.0-13cross1 [10.1 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libasan8-ppc64el-cross all 15.2.0-13cross1 [2712 kB] Get:28 http://localhost:3142/debian unstable/main amd64 liblsan0-ppc64el-cross all 15.2.0-13cross1 [1253 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libtsan2-ppc64el-cross all 15.2.0-13cross1 [2449 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libstdc++6-ppc64el-cross all 15.2.0-13cross1 [773 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libubsan1-ppc64el-cross all 15.2.0-13cross1 [1177 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libquadmath0-ppc64el-cross all 15.2.0-13cross1 [156 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-ppc64el-cross all 15.2.0-13cross1 [1455 kB] Get:34 http://localhost:3142/debian unstable/main amd64 gcc-15-powerpc64le-linux-gnu amd64 15.2.0-13cross1 [21.1 MB] Get:35 http://localhost:3142/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:15.2.0-5 [1460 B] Get:36 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 6.18.12-1 [12.0 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.42-12cross1 [1927 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-ppc64el-cross all 15.2.0-13cross1 [2548 kB] Get:39 http://localhost:3142/debian unstable/main amd64 g++-15-powerpc64le-linux-gnu amd64 15.2.0-13cross1 [12.0 MB] Get:40 http://localhost:3142/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:15.2.0-5 [1212 B] Get:41 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.12 [3560 B] Get:42 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.30 [92.7 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-9 [540 kB] Get:44 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21+nmu1 [11.7 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:47 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:48 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:49 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2+b1 [466 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2+b1 [641 kB] Get:52 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:53 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:54 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:55 http://localhost:3142/debian unstable/main amd64 debhelper all 13.30 [942 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.2-1 [29.9 kB] Get:57 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.2-1 [76.2 kB] Get:58 http://localhost:3142/debian unstable/main ppc64el gcc-15-base ppc64el 15.2.0-14 [55.1 kB] Get:59 http://localhost:3142/debian unstable/main ppc64el libgcc-s1 ppc64el 15.2.0-14 [52.4 kB] Get:60 http://localhost:3142/debian unstable/main ppc64el libc-gconv-modules-extra ppc64el 2.42-13 [1150 kB] Get:61 http://localhost:3142/debian unstable/main ppc64el libc6 ppc64el 2.42-13 [1698 kB] Get:62 http://localhost:3142/debian unstable/main ppc64el libasan8 ppc64el 15.2.0-14 [2719 kB] Get:63 http://localhost:3142/debian unstable/main ppc64el libatomic1 ppc64el 15.2.0-14 [10.4 kB] Get:64 http://localhost:3142/debian unstable/main ppc64el libc6-dev ppc64el 2.42-13 [1933 kB] Get:65 http://localhost:3142/debian unstable/main ppc64el libgomp1 ppc64el 15.2.0-14 [149 kB] Get:66 http://localhost:3142/debian unstable/main ppc64el libitm1 ppc64el 15.2.0-14 [29.0 kB] Get:67 http://localhost:3142/debian unstable/main ppc64el liblsan0 ppc64el 15.2.0-14 [1253 kB] Get:68 http://localhost:3142/debian unstable/main ppc64el libtsan2 ppc64el 15.2.0-14 [2457 kB] Get:69 http://localhost:3142/debian unstable/main ppc64el libstdc++6 ppc64el 15.2.0-14 [824 kB] Get:70 http://localhost:3142/debian unstable/main ppc64el libubsan1 ppc64el 15.2.0-14 [1178 kB] Get:71 http://localhost:3142/debian unstable/main ppc64el libquadmath0 ppc64el 15.2.0-14 [156 kB] Get:72 http://localhost:3142/debian unstable/main ppc64el libgcc-15-dev ppc64el 15.2.0-14 [1466 kB] Get:73 http://localhost:3142/debian unstable/main ppc64el libstdc++-15-dev ppc64el 15.2.0-14 [2575 kB] Preconfiguring packages ... Fetched 90.9 MB in 0s (188 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5+b1_amd64.deb ... Unpacking file (1:5.46-5+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up gcc-15-powerpc64le-linux-gnu-base:amd64 (15.2.0-13cross1) ... Setting up fakeroot (1.37.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20240727.1) ... Setting up cpp-15-powerpc64le-linux-gnu (15.2.0-13cross1) ... Setting up libunistring5:amd64 (1.3-2+b1) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2+b1) ... Setting up linux-libc-dev-ppc64el-cross (6.18.12-1) ... Setting up binutils-powerpc64le-linux-gnu (2.46-2) ... Setting up gcc-15-cross-base (15.2.0-13cross1) ... Setting up gcc-15-base:ppc64el (15.2.0-14) ... Setting up cpp-powerpc64le-linux-gnu (4:15.2.0-5) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libc6-dev-ppc64el-cross (2.42-12cross1) ... Setting up libtool (2.5.4-9) ... Setting up libquadmath0-ppc64el-cross (15.2.0-13cross1) ... Setting up libgomp1-ppc64el-cross (15.2.0-13cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21+nmu1) ... Setting up libitm1-ppc64el-cross (15.2.0-13cross1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libatomic1-ppc64el-cross (15.2.0-13cross1) ... Setting up groff-base (1.23.0-10) ... Setting up libgcc-s1-ppc64el-cross (15.2.0-13cross1) ... Setting up po-debconf (1.0.22) ... Setting up libasan8-ppc64el-cross (15.2.0-13cross1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up liblsan0-ppc64el-cross (15.2.0-13cross1) ... Setting up libtsan2-ppc64el-cross (15.2.0-13cross1) ... Setting up libstdc++6-ppc64el-cross (15.2.0-13cross1) ... Setting up libubsan1-ppc64el-cross (15.2.0-13cross1) ... Setting up debhelper (13.30) ... Setting up libgcc-15-dev-ppc64el-cross (15.2.0-13cross1) ... Setting up libstdc++-15-dev-ppc64el-cross (15.2.0-13cross1) ... Setting up gcc-15-powerpc64le-linux-gnu (15.2.0-13cross1) ... Setting up gcc-powerpc64le-linux-gnu (4:15.2.0-5) ... Setting up g++-15-powerpc64le-linux-gnu (15.2.0-13cross1) ... Setting up g++-powerpc64le-linux-gnu (4:15.2.0-5) ... Setting up crossbuild-essential-ppc64el (12.12) ... Setting up libgcc-s1:ppc64el (15.2.0-14) ... Setting up libc6:ppc64el (2.42-13) ... Setting up libasan8:ppc64el (15.2.0-14) ... Setting up libc6-dev:ppc64el (2.42-13) ... Setting up libtsan2:ppc64el (15.2.0-14) ... Setting up libstdc++6:ppc64el (15.2.0-14) ... Setting up liblsan0:ppc64el (15.2.0-14) ... Setting up libitm1:ppc64el (15.2.0-14) ... Setting up libgomp1:ppc64el (15.2.0-14) ... Setting up libquadmath0:ppc64el (15.2.0-14) ... Setting up libatomic1:ppc64el (15.2.0-14) ... Setting up libubsan1:ppc64el (15.2.0-14) ... Setting up libgcc-15-dev:ppc64el (15.2.0-14) ... Setting up libstdc++-15-dev:ppc64el (15.2.0-14) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in amd64 arm64 loong64 mips64el ppc64el hppa ia64 kfreebsd-amd64 riscv64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.46-2 dpkg-dev_1.23.5 g++-15_15.2.0-14 gcc-15_15.2.0-14 libc6-dev_2.42-13 libstdc++-15-dev_15.2.0-14 libstdc++-15-dev-ppc64el-cross_15.2.0-13cross1 libstdc++6_15.2.0-14 libstdc++6-ppc64el-cross_15.2.0-13cross1 linux-libc-dev_6.18.12-1 Package versions: apt_3.1.16 apt-utils_3.1.16 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-2 binutils_2.46-2 binutils-common_2.46-2 binutils-powerpc64le-linux-gnu_2.46-2 binutils-x86-64-linux-gnu_2.46-2 bsdextrautils_2.41.3-4 bsdutils_1:2.41.3-4 build-essential_12.12 bzip2_1.0.8-6+b1 coreutils_9.7-3 cpp_4:15.2.0-5 cpp-15_15.2.0-14 cpp-15-powerpc64le-linux-gnu_15.2.0-13cross1 cpp-15-x86-64-linux-gnu_15.2.0-14 cpp-powerpc64le-linux-gnu_4:15.2.0-5 cpp-x86-64-linux-gnu_4:15.2.0-5 crossbuild-essential-ppc64el_12.12 dash_0.5.12-12 debconf_1.5.92 debhelper_13.30 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21+nmu1 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.5 dpkg-dev_1.23.5 dwz_0.16-2 fakeroot_1.37.2-1 file_1:5.46-5+b1 findutils_4.10.0-3 g++_4:15.2.0-5 g++-15_15.2.0-14 g++-15-powerpc64le-linux-gnu_15.2.0-13cross1 g++-15-x86-64-linux-gnu_15.2.0-14 g++-powerpc64le-linux-gnu_4:15.2.0-5 g++-x86-64-linux-gnu_4:15.2.0-5 gcc_4:15.2.0-5 gcc-15_15.2.0-14 gcc-15-base_15.2.0-14 gcc-15-cross-base_15.2.0-13cross1 gcc-15-powerpc64le-linux-gnu_15.2.0-13cross1 gcc-15-powerpc64le-linux-gnu-base_15.2.0-13cross1 gcc-15-x86-64-linux-gnu_15.2.0-14 gcc-powerpc64le-linux-gnu_4:15.2.0-5 gcc-x86-64-linux-gnu_4:15.2.0-5 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-10 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libapt-pkg7.0_3.1.16 libarchive-zip-perl_1.68-1 libasan8_15.2.0-14 libasan8-ppc64el-cross_15.2.0-13cross1 libatomic1_15.2.0-14 libatomic1-ppc64el-cross_15.2.0-13cross1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-2 libblkid1_2.41.3-4 libbsd0_0.12.2-2+b1 libbz2-1.0_1.0.8-6+b1 libc-bin_2.42-13 libc-dev-bin_2.42-13 libc-gconv-modules-extra_2.42-13 libc6_2.42-13 libc6-dev_2.42-13 libc6-dev-ppc64el-cross_2.42-12cross1 libc6-ppc64el-cross_2.42-12cross1 libcap-ng0_0.9.1-1 libcap2_1:2.75-10+b5 libcc1-0_15.2.0-14 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.46-2 libctf0_2.46-2 libdb5.3t64_5.3.28+dfsg2-11 libdebconfclient0_0.282+b2 libdebhelper-perl_13.30 libdpkg-perl_1.23.5 libelf1t64_0.194-1 libfakeroot_1.37.2-1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-14 libgcc-15-dev-ppc64el-cross_15.2.0-13cross1 libgcc-s1_15.2.0-14 libgcc-s1-ppc64el-cross_15.2.0-13cross1 libgdbm-compat4t64_1.26-1+b1 libgdbm6t64_1.26-1+b1 libgmp10_2:6.3.0+dfsg-5+b1 libgomp1_15.2.0-14 libgomp1-ppc64el-cross_15.2.0-13cross1 libgprofng0_2.46-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-14 libisl23_0.27-1+b1 libitm1_15.2.0-14 libitm1-ppc64el-cross_15.2.0-13cross1 libjansson4_2.14-2+b4 liblsan0_15.2.0-14 liblsan0-ppc64el-cross_15.2.0-13cross1 liblz4-1_1.10.0-7 liblzma5_5.8.2-2 libmagic-mgc_1:5.46-5+b1 libmagic1t64_1:5.46-5+b1 libmd0_1.1.0-2+b2 libmount1_2.41.3-4 libmpc3_1.3.1-2+b1 libmpfr6_4.2.2-2+b1 libnettle8t64_3.10.2-1 libpam-modules_1.7.0-5+b1 libpam-modules-bin_1.7.0-5+b1 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b1 libpcre2-8-0_10.46-1+b1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libquadmath0_15.2.0-14 libquadmath0-ppc64el-cross_15.2.0-13cross1 libseccomp2_2.6.0-2+b1 libselinux1_3.9-4+b1 libsemanage-common_3.9-1 libsemanage2_3.9-1+b1 libsepol2_3.9-2 libsframe3_2.46-2 libsmartcols1_2.41.3-4 libssl3t64_3.5.5-1 libstdc++-15-dev_15.2.0-14 libstdc++-15-dev-ppc64el-cross_15.2.0-13cross1 libstdc++6_15.2.0-14 libstdc++6-ppc64el-cross_15.2.0-13cross1 libsystemd0_259.1-1 libtinfo6_6.6+20251231-1 libtool_2.5.4-9 libtsan2_15.2.0-14 libtsan2-ppc64el-cross_15.2.0-13cross1 libubsan1_15.2.0-14 libubsan1-ppc64el-cross_15.2.0-13cross1 libuchardet0_0.0.8-2+b1 libudev1_259.1-1 libunistring5_1.3-2+b1 libuuid1_2.41.3-4 libxml2-16_2.15.1+dfsg-2+b1 libxxhash0_0.8.3-2+b1 libzstd1_1.5.7+dfsg-3+b1 linux-libc-dev_6.18.12-1 linux-libc-dev-ppc64el-cross_6.18.12-1 login_1:4.16.0-2+really2.41.3-4 login.defs_1:4.19.3-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260129-1 mount_2.41.3-4 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1 openssl-provider-legacy_3.5.5-1 passwd_1:4.19.3-1 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-5 sysvinit-utils_3.15-6 tar_1.35+dfsg-4 tzdata_2025c-3 util-linux_2.41.3-4 xz-utils_5.8.2-2 zlib1g_1:1.3.dfsg+really1.3.1-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: jellyfish1 Binary: jellyfish1 Architecture: amd64 arm64 loong64 mips64el ppc64el hppa ia64 kfreebsd-amd64 riscv64 Version: 1.1.11-10 Maintainer: Debian Med Packaging Team Uploaders: Shaun Jackman , Andreas Tille Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/jellyfish1 Vcs-Git: https://salsa.debian.org/med-team/jellyfish1.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: jellyfish1 deb science optional arch=amd64,arm64,loong64,mips64el,ppc64el,hppa,ia64,kfreebsd-amd64,riscv64 Checksums-Sha1: 8bd6a7b382e94d37adfddd916dec2b0e36f840fd 1067138 jellyfish1_1.1.11.orig.tar.gz f44617fab06e5222f3c36353827d16b4c16847ac 6848 jellyfish1_1.1.11-10.debian.tar.xz Checksums-Sha256: 496645d96b08ba35db1f856d857a159798c73cbc1eccb852ef1b253d1678c8e2 1067138 jellyfish1_1.1.11.orig.tar.gz 927e4679b2d60463bb6cb3c1e1bdf3ce05c7d91c99fcf0db16f853ff928bb797 6848 jellyfish1_1.1.11-10.debian.tar.xz Files: dc994ea8b0896156500ea8c648f24846 1067138 jellyfish1_1.1.11.orig.tar.gz 660c85dc4cbe0472b4e49449a2fc2c36 6848 jellyfish1_1.1.11-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdohN8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEiMRAAlL5tmIBxbRYfsVxYJYA3XPZ5G8lcCxQi 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/usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting jellyfish1 in /<> dpkg-source: info: unpacking jellyfish1_1.1.11.orig.tar.gz dpkg-source: info: unpacking jellyfish1_1.1.11-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man dpkg-source: info: applying arm64.patch dpkg-source: info: applying mips.patch dpkg-source: info: applying autoconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.uV9k3VV3bs/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-c993ed34-660d-4fd8-b18c-6a424264b58e SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package jellyfish1 dpkg-buildpackage: info: source version 1.1.11-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:8: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:8: the top level configure.ac:61: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:61: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:61: the top level configure.ac:8: installing './compile' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=powerpc64le-linux-gnu checking build system type... x86_64-pc-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for powerpc64le-linux-gnu-strip... powerpc64le-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for powerpc64le-linux-gnu-gcc... powerpc64le-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether powerpc64le-linux-gnu-gcc accepts -g... yes checking for powerpc64le-linux-gnu-gcc option to enable C11 features... none needed checking whether powerpc64le-linux-gnu-gcc understands -c and -o together... yes checking dependency style of powerpc64le-linux-gnu-gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by powerpc64le-linux-gnu-gcc... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/powerpc64le-linux-gnu-nm -B checking the name lister (/usr/bin/powerpc64le-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/powerpc64le-linux-gnu/bin/ld option to reload object files... -r checking for file... file checking for powerpc64le-linux-gnu-objdump... powerpc64le-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for powerpc64le-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for powerpc64le-linux-gnu-ranlib... powerpc64le-linux-gnu-ranlib checking for powerpc64le-linux-gnu-ar... powerpc64le-linux-gnu-ar checking for archiver @FILE support... @ checking for powerpc64le-linux-gnu-strip... (cached) powerpc64le-linux-gnu-strip checking command to parse /usr/bin/powerpc64le-linux-gnu-nm -B output from powerpc64le-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for powerpc64le-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if powerpc64le-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for powerpc64le-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-gcc static flag -static works... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... yes checking if powerpc64le-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-gcc linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for powerpc64le-linux-gnu-g++... powerpc64le-linux-gnu-g++ checking whether the compiler supports GNU C++... yes checking whether powerpc64le-linux-gnu-g++ accepts -g... yes checking for powerpc64le-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of powerpc64le-linux-gnu-g++... none checking how to run the C++ preprocessor... powerpc64le-linux-gnu-g++ -E checking for ld used by powerpc64le-linux-gnu-g++... /usr/powerpc64le-linux-gnu/bin/ld checking if the linker (/usr/powerpc64le-linux-gnu/bin/ld) is GNU ld... yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking for powerpc64le-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if powerpc64le-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if powerpc64le-linux-gnu-g++ static flag -static works... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... yes checking if powerpc64le-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the powerpc64le-linux-gnu-g++ linker (/usr/powerpc64le-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for md5sum... md5sum checking for __int128... yes checking for powerpc64le-linux-gnu-g++ options needed to detect all undeclared functions... none needed checking whether strerror_r is declared... yes checking whether strerror_r returns char *... yes checking for execinfo.h... yes checking for sys/syscall.h... yes checking for siginfo_t.si_int... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tests/compat.sh config.status: creating jellyfish-1.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all make -j1 all bin/generate_sequence bin/test_all make[2]: Entering directory '/<>' make all-am make[3]: Entering directory '/<>' powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/jellyfish.o jellyfish/jellyfish.cc powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/stats_main.o jellyfish/stats_main.cc In file included from jellyfish/stats_main.cc:24: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]’: ./jellyfish/raw_dumper.hpp:169:11: required from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array; storage_t = jellyfish::invertible_hash::array]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/raw_dumper.hpp:98:20: required from ‘jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array]’ 98 | _ary = init(_file, hash_matrix, hash_inverse_matrix); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/stats_main.cc:83:34: required from here 83 | raw_inv_hash_query_t hash(dbf); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/stats_main.cc:26: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/stats_main.cc:25: ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_merge.o jellyfish/hash_merge.cc In file included from jellyfish/hash_merge.cc:32: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/mer_counting.hpp:31, from jellyfish/hash_merge.cc:34: ./jellyfish/compacted_hash.hpp: In instantiation of ‘void jellyfish::compacted_hash::writer::write_header(std::ostream*) const [with storage_t = jellyfish::compacted_hash::reader; std::ostream = std::basic_ostream]’: jellyfish/hash_merge.cc:189:38: required from here 189 | info.buffers[0].writer.write_header(&out); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ ./jellyfish/compacted_hash.hpp:114:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct jellyfish::compacted_hash::header’; use assignment or value-initialization instead [-Wclass-memaccess] 114 | memset(&head, '\0', sizeof(head)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/compacted_hash.hpp:36:12: note: ‘struct jellyfish::compacted_hash::header’ declared here 36 | struct header { | ^~~~~~ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::reader::get_hash_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:245:59, inlined from ‘int merge_main(int, char**)’ at jellyfish/hash_merge.cc:138:69: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/hash_merge.cc:33: ./jellyfish/misc.hpp: In function ‘int merge_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::reader::get_hash_inverse_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:246:67, inlined from ‘int merge_main(int, char**)’ at jellyfish/hash_merge.cc:140:35: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int merge_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::reader::get_hash_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:245:59, inlined from ‘int merge_main(int, char**)’ at jellyfish/hash_merge.cc:135:45: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int merge_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::reader::get_hash_inverse_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:246:67, inlined from ‘int merge_main(int, char**)’ at jellyfish/hash_merge.cc:136:61: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int merge_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mer_counter.o jellyfish/mer_counter.cc In file included from jellyfish/mer_counter.cc:33: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]’: ./jellyfish/invertible_hash_array.hpp:116:11: required from ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = long unsigned int; uint_t = long unsigned int]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/mer_counter.cc:142:66: required from here 142 | jellyfish::quadratic_reprobes); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::invertible_hash::InvalidMatrix]’: ./jellyfish/invertible_hash_array.hpp:185:11: required from ‘void jellyfish::invertible_hash::array::set_matrix(SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/mer_counter.cc:149:22: required from here 149 | ary->set_matrix(m); | ~~~~~~~~~~~~~~~^~~ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::double_fifo_input::Error]’: ./jellyfish/double_fifo_input.hpp:101:7: required from ‘jellyfish::double_fifo_input::double_fifo_input(long unsigned int) [with T = jellyfish::sequence_parser::sequence_t]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/parse_dna.hpp:178:75: required from ‘jellyfish::parse_dna::parse_dna(T, T, uint_t, unsigned int, size_t) [with T = __gnu_cxx::__normal_iterator >; uint_t = long unsigned int; size_t = long unsigned int]’ 178 | have_seam(false), buffer_data(buffer_size * nb_buffers), canonical(false) | ^ jellyfish/mer_counter.cc:138:60: required from here 138 | args->buffer_size_arg); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/mer_counting.hpp:31, from jellyfish/mer_counter.cc:38: ./jellyfish/compacted_hash.hpp: In instantiation of ‘void jellyfish::compacted_hash::writer::write_header(std::ostream*) const [with storage_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>; std::ostream = std::basic_ostream]’: ./jellyfish/direct_sorted_dumper.hpp:101:39: required from ‘void jellyfish::direct_sorted_dumper::_dump() [with storage_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]’ 101 | thread_info[0].writer.write_header(out); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./jellyfish/direct_sorted_dumper.hpp:91:8: required from here 91 | void direct_sorted_dumper::_dump() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/compacted_hash.hpp:114:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct jellyfish::compacted_hash::header’; use assignment or value-initialization instead [-Wclass-memaccess] 114 | memset(&head, '\0', sizeof(head)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/compacted_hash.hpp:36:12: note: ‘struct jellyfish::compacted_hash::header’ declared here 36 | struct header { | ^~~~~~ ./jellyfish/compacted_hash.hpp: In instantiation of ‘void jellyfish::compacted_hash::writer::write_header(std::ostream*) const [with storage_t = jellyfish::invertible_hash::array; std::ostream = std::basic_ostream]’: ./jellyfish/sorted_dumper.hpp:116:39: required from ‘void jellyfish::sorted_dumper::_dump() [with storage_t = jellyfish::invertible_hash::array; atomic_t = atomic::gcc]’ 116 | thread_info[0].writer.write_header(out); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ ./jellyfish/sorted_dumper.hpp:105:8: required from here 105 | void sorted_dumper::_dump() { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/compacted_hash.hpp:114:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct jellyfish::compacted_hash::header’; use assignment or value-initialization instead [-Wclass-memaccess] 114 | memset(&head, '\0', sizeof(head)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/compacted_hash.hpp:36:12: note: ‘struct jellyfish::compacted_hash::header’ declared here 36 | struct header { | ^~~~~~ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::hash, atomic::gcc>::TableFull]’: ./jellyfish/hash.hpp:151:9: required from ‘void jellyfish::hash::dump() [with key_t = long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array; atomic = atomic::gcc]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/mer_counter.cc:114:17: required from ‘void mer_counting::start(int) [with parser_t = jellyfish::parse_quake; hash_t = jellyfish::hash, atomic::gcc>]’ 114 | hash->dump(); | ~~~~~~~~~~^~ jellyfish/mer_counter.cc:97:8: required from here 97 | void start(int id) { | ^~~~~ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::hash, jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>, atomic::gcc>::TableFull]’: ./jellyfish/hash.hpp:151:9: required from ‘void jellyfish::hash::dump() [with key_t = long unsigned int; val_t = jellyfish::capped_integer; ary_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>; atomic = atomic::gcc]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/mer_counter.cc:114:17: required from ‘void mer_counting::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash, jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>, atomic::gcc>]’ 114 | hash->dump(); | ~~~~~~~~~~^~ jellyfish/mer_counter.cc:97:8: required from here 97 | void start(int id) { | ^~~~~ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::hash, atomic::gcc>::TableFull]’: ./jellyfish/hash.hpp:151:9: required from ‘void jellyfish::hash::dump() [with key_t = long unsigned int; val_t = long unsigned int; ary_t = jellyfish::invertible_hash::array; atomic = atomic::gcc]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/mer_counter.cc:114:17: required from ‘void mer_counting::start(int) [with parser_t = jellyfish::parse_qual_dna; hash_t = jellyfish::hash, atomic::gcc>]’ 114 | hash->dump(); | ~~~~~~~~~~^~ jellyfish/mer_counter.cc:97:8: required from here 97 | void start(int id) { | ^~~~~ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘void jellyfish::direct_indexing::array::write_ary_header(std::ostream*) const [with key_t = long unsigned int; val_t = jellyfish::capped_integer; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/direct_indexing_array.hpp:52:28, inlined from ‘void jellyfish::compacted_hash::writer::write_header(std::ostream*) const [with storage_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>]’ at ./jellyfish/compacted_hash.hpp:121:30, inlined from ‘void jellyfish::direct_sorted_dumper::_dump() [with storage_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]’ at ./jellyfish/direct_sorted_dumper.hpp:101:39: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/mer_counter.cc:36: ./jellyfish/misc.hpp: In member function ‘void jellyfish::direct_sorted_dumper::_dump() [with storage_t = jellyfish::direct_indexing::array, atomic::gcc, allocators::mmap>; atomic_t = atomic::gcc]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘void jellyfish::invertible_hash::array::set_matrix(SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:187:23, inlined from ‘void jellyfish::invertible_hash::array::set_matrix(SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:183:12: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘void jellyfish::invertible_hash::array::set_matrix(SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:112:9: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In constructor ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_main.o jellyfish/histo_main.cc In file included from jellyfish/histo_main.cc:25: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]’: ./jellyfish/raw_dumper.hpp:169:11: required from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array; storage_t = jellyfish::invertible_hash::array]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/raw_dumper.hpp:98:20: required from ‘jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array]’ 98 | _ary = init(_file, hash_matrix, hash_inverse_matrix); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/histo_main.cc:111:34: required from here 111 | raw_inv_hash_query_t hash(dbf); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/histo_main.cc:27: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/histo_main.cc:26: ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::query::get_hash_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:370:59, inlined from ‘int histo_main(int, char**)’ at jellyfish/histo_main.cc:121:60: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int histo_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘SquareBinaryMatrix jellyfish::compacted_hash::query::get_hash_inverse_matrix() const [with key_t = long unsigned int; val_t = long unsigned int]’ at ./jellyfish/compacted_hash.hpp:371:67, inlined from ‘int histo_main(int, char**)’ at jellyfish/histo_main.cc:122:68: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int histo_main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_main.o jellyfish/dump_main.cc jellyfish/dump_main.cc: In function ‘int dump_main(int, char**)’: jellyfish/dump_main.cc:86:24: warning: catching polymorphic type ‘class mapped_file::ErrorMMap’ by value [-Wcatch-value=] 86 | } catch(mapped_file::ErrorMMap) { | ^~~~~~~~~ In file included from jellyfish/dump_main.cc:24: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]’: ./jellyfish/raw_dumper.hpp:169:11: required from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array; storage_t = jellyfish::invertible_hash::array]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/raw_dumper.hpp:98:20: required from ‘jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array]’ 98 | _ary = init(_file, hash_matrix, hash_inverse_matrix); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/dump_main.cc:65:44: required from here 65 | raw_inv_hash_query_t hash(dbf); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/dump_main.cc:26: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/dump_main.cc:25: ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/query_main.o jellyfish/query_main.cc In file included from ./jellyfish/mapped_file.hpp:29, from ./jellyfish/hash.hpp:27, from ./jellyfish/mer_counting.hpp:28, from jellyfish/query_main.cc:24: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::raw_hash::ErrorReading]’: ./jellyfish/raw_dumper.hpp:169:11: required from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array; storage_t = jellyfish::invertible_hash::array]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/raw_dumper.hpp:98:20: required from ‘jellyfish::raw_hash::query<_storage_t>::query(mapped_file&) [with _storage_t = jellyfish::invertible_hash::array]’ 98 | _ary = init(_file, hash_matrix, hash_inverse_matrix); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/query_main.cc:63:34: required from here 63 | raw_inv_hash_query_t hash(dbf); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/query_main.cc:23: ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’ at ./jellyfish/raw_dumper.hpp:199:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static jellyfish::raw_hash::query<_storage_t>::storage_t* jellyfish::raw_hash::query<_storage_t>::init(mapped_file&, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _storage_t = jellyfish::invertible_hash::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dump_fastq_main.o jellyfish/dump_fastq_main.cc In file included from jellyfish/dump_fastq_main.cc:25: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/dump_fastq_main.cc:27: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/dump_fastq_main.cc:26: ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/histo_fastq_main.o jellyfish/histo_fastq_main.cc In file included from jellyfish/histo_fastq_main.cc:26: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/histo_fastq_main.cc:28: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/histo_fastq_main.cc:27: ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/cite.o jellyfish/cite.cc powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/hash_fastq_merge.o jellyfish/hash_fastq_merge.cc In file included from jellyfish/hash_fastq_merge.cc:17: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]’: ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::dumper_t::ErrorWriting]’: ./jellyfish/dumper.hpp:44:9: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::compacted_hash::ErrorReading]’: ./jellyfish/compacted_hash.hpp:50:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::fastq_hash::ErrorReading]’: ./jellyfish/fastq_dumper.hpp:46:11: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::hash, atomic::gcc>::TableFull]’: ./jellyfish/hash.hpp:151:9: required from ‘void jellyfish::hash::dump() [with key_t = long unsigned int; val_t = jellyfish::Float; ary_t = jellyfish::aligned_values::array; atomic = atomic::gcc]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/hash_fastq_merge.cc:49:12: required from here 49 | hash.dump(); | ~~~~~~~~~^~ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]’: ./jellyfish/simple_growing_array.hpp:55:9: required from ‘void jellyfish::simple_growing_array::resize() [with T = char]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from ‘jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]’ 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = jellyfish::invertible_hash::ErrorAllocation]’: ./jellyfish/invertible_hash_array.hpp:116:11: required from ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap; size_t = long unsigned int; uint_t = long unsigned int]’ 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/aligned_values_array.hpp:41:9: required from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(size_t, uint_t, uint_t, size_t*) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap; size_t = long unsigned int; uint_t = long unsigned int]’ 41 | keys(_size, _key_len, 0, _reprobe_limit, _reprobes), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ jellyfish/hash_fastq_merge.cc:28:79: required from here 28 | args.reprobes_arg, jellyfish::quadratic_reprobes); | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from ./jellyfish/hash.hpp:31, from ./jellyfish/mer_counting.hpp:28, from jellyfish/hash_fastq_merge.cc:19: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:9, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/hash_fastq_merge.cc:18: ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘jellyfish::invertible_hash::array::array(char*, size_t, uint_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:173:36, inlined from ‘jellyfish::aligned_values::array<_key_t, _val_t, atomic, mem_block_t>::array(char*, char*, size_t, uint_t, uint_t, size_t*, SquareBinaryMatrix&, SquareBinaryMatrix&) [with _key_t = long unsigned int; _val_t = jellyfish::Float; atomic = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/aligned_values_array.hpp:49:9, inlined from ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’ at ./jellyfish/fastq_dumper.hpp:122:14: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In static member function ‘static storage_t* jellyfish::fastq_hash::raw_dumper::read(const mapped_file&) [with storage_t = jellyfish::aligned_values::array]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’ at ./jellyfish/invertible_hash_array.hpp:112:9: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In constructor ‘jellyfish::invertible_hash::array::array(size_t, uint_t, uint_t, uint_t, size_t*) [with word = long unsigned int; atomic_t = atomic::gcc; mem_block_t = allocators::mmap]’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/yaggo.o jellyfish/yaggo.cpp /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/square_binary_matrix.lo jellyfish/square_binary_matrix.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc -fPIC -DPIC -o jellyfish/.libs/square_binary_matrix.o In file included from ./jellyfish/square_binary_matrix.hpp:27, from jellyfish/square_binary_matrix.cc:21: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]': ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]': ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::SingularMatrix]': jellyfish/square_binary_matrix.cc:93:2: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'SquareBinaryMatrix::SquareBinaryMatrix(int)' at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from 'SquareBinaryMatrix SquareBinaryMatrix::transpose() const' at jellyfish/square_binary_matrix.cc:52:30: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/square_binary_matrix.cc:20: ./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::transpose() const': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'void SquareBinaryMatrix::alloc_columns()' at ./jellyfish/square_binary_matrix.hpp:55:26, inlined from 'void SquareBinaryMatrix::load(std::istream*)' at jellyfish/square_binary_matrix.cc:143:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function 'void SquareBinaryMatrix::load(std::istream*)': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'void SquareBinaryMatrix::alloc_columns()' at ./jellyfish/square_binary_matrix.hpp:55:26, inlined from 'size_t SquareBinaryMatrix::read(const char*)' at jellyfish/square_binary_matrix.cc:154:16: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function 'size_t SquareBinaryMatrix::read(const char*)': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'SquareBinaryMatrix::SquareBinaryMatrix(int)' at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from 'SquareBinaryMatrix SquareBinaryMatrix::operator*(const SquareBinaryMatrix&) const' at jellyfish/square_binary_matrix.cc:65:30: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::operator*(const SquareBinaryMatrix&) const': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)' at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const' at jellyfish/square_binary_matrix.cc:80:33: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ In member function 'uint64_t* SquareBinaryMatrix::first_alloc(size_t)', inlined from 'SquareBinaryMatrix::SquareBinaryMatrix(int)' at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const' at jellyfish/square_binary_matrix.cc:81:30: ./jellyfish/square_binary_matrix.hpp:44:5: warning: '*&ptr' may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function 'SquareBinaryMatrix SquareBinaryMatrix::inverse() const': ./jellyfish/misc.hpp:106:11: note: '*&ptr' was declared here 106 | Tptr ptr; | ^~~ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/square_binary_matrix.cc -o jellyfish/square_binary_matrix.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/err.lo jellyfish/err.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc -fPIC -DPIC -o jellyfish/.libs/err.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/err.cc -o jellyfish/err.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/misc.lo jellyfish/misc.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc -fPIC -DPIC -o jellyfish/.libs/misc.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/misc.cc -o jellyfish/misc.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/storage.lo jellyfish/storage.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc -fPIC -DPIC -o jellyfish/.libs/storage.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/storage.cc -o jellyfish/storage.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/thread_exec.lo jellyfish/thread_exec.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc -fPIC -DPIC -o jellyfish/.libs/thread_exec.o In file included from jellyfish/thread_exec.hpp:26, from jellyfish/thread_exec.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = thread_exec::Error]': jellyfish/thread_exec.cc:28:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/thread_exec.cc -o jellyfish/thread_exec.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/time.lo jellyfish/time.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc -fPIC -DPIC -o jellyfish/.libs/time.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/time.cc -o jellyfish/time.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/file_parser.lo jellyfish/file_parser.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc -fPIC -DPIC -o jellyfish/.libs/file_parser.o In file included from jellyfish/file_parser.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]': jellyfish/file_parser.cc:33:5: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/file_parser.cc -o jellyfish/file_parser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/read_parser.lo jellyfish/read_parser.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc -fPIC -DPIC -o jellyfish/.libs/read_parser.o In file included from ./jellyfish/file_parser.hpp:24, from ./jellyfish/read_parser.hpp:20, from jellyfish/read_parser.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]': jellyfish/read_parser.cc:30:5: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/read_parser.cc -o jellyfish/read_parser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_read.lo jellyfish/parse_read.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc -fPIC -DPIC -o jellyfish/.libs/parse_read.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_read.cc -o jellyfish/parse_read.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/half.lo jellyfish/half.cpp libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp -fPIC -DPIC -o jellyfish/.libs/half.o In file included from jellyfish/half.cpp:48: ./jellyfish/half.h: In constructor 'half::half(float)': ./jellyfish/half.h:471:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 471 | register int e = (x.i >> 23) & 0x000001ff; | ^ ./jellyfish/half.h:482:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 482 | register int m = x.i & 0x007fffff; | ^ jellyfish/half.cpp: In static member function 'static short int half::convert(int)': jellyfish/half.cpp:98:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 98 | register int s = (i >> 16) & 0x00008000; | ^ jellyfish/half.cpp:99:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 99 | register int e = ((i >> 23) & 0x000000ff) - (127 - 15); | ^ jellyfish/half.cpp:100:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 100 | register int m = i & 0x007fffff; | ^ libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/half.cpp -o jellyfish/half.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mapped_file.lo jellyfish/mapped_file.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc -fPIC -DPIC -o jellyfish/.libs/mapped_file.o In file included from ./jellyfish/mapped_file.hpp:29, from jellyfish/mapped_file.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = mapped_file::ErrorMMap]': ./jellyfish/mapped_file.hpp:46:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/mapped_file.cc -o jellyfish/mapped_file.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_dna.lo jellyfish/parse_dna.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc -fPIC -DPIC -o jellyfish/.libs/parse_dna.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_dna.cc -o jellyfish/parse_dna.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_quake.lo jellyfish/parse_quake.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc -fPIC -DPIC -o jellyfish/.libs/parse_quake.o In file included from ./jellyfish/double_fifo_input.hpp:23, from ./jellyfish/parse_quake.hpp:22, from jellyfish/parse_quake.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::double_fifo_input::Error]': ./jellyfish/double_fifo_input.hpp:101:7: required from 'jellyfish::double_fifo_input::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]' 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/parse_quake.cc:27:40: required from here 27 | quality_start(_qs), canonical(false) | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]': ./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array::resize() [with T = char]' 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from 'jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]' 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_quake.cc -o jellyfish/parse_quake.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/parse_qual_dna.lo jellyfish/parse_qual_dna.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc -fPIC -DPIC -o jellyfish/.libs/parse_qual_dna.o In file included from ./jellyfish/double_fifo_input.hpp:23, from ./jellyfish/parse_qual_dna.hpp:22, from jellyfish/parse_qual_dna.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::double_fifo_input::Error]': ./jellyfish/double_fifo_input.hpp:101:7: required from 'jellyfish::double_fifo_input::double_fifo_input(long unsigned int) [with T = jellyfish::seq_qual_parser::sequence_t]' 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ jellyfish/parse_qual_dna.cc:27:55: required from here 27 | quality_start(_qs), min_q(_min_q), canonical(false) | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]': ./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array::resize() [with T = char]' 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from 'jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]' 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/parse_qual_dna.cc -o jellyfish/parse_qual_dna.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/sequence_parser.lo jellyfish/sequence_parser.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc -fPIC -DPIC -o jellyfish/.libs/sequence_parser.o jellyfish/sequence_parser.cc: In member function 'virtual bool jellyfish::fasta_sequence_parser::parse(char*, char**)': jellyfish/sequence_parser.cc:43:5: warning: case label value is less than minimum value for type [-Wswitch-outside-range] 43 | case _eof: | ^~~~ In file included from ./jellyfish/sequence_parser.hpp:21, from jellyfish/sequence_parser.cc:18: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]': jellyfish/sequence_parser.cc:32:5: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/sequence_parser.cc -o jellyfish/sequence_parser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/seq_qual_parser.lo jellyfish/seq_qual_parser.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc -fPIC -DPIC -o jellyfish/.libs/seq_qual_parser.o In file included from ./jellyfish/seq_qual_parser.hpp:21, from jellyfish/seq_qual_parser.cc:17: ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::file_parser::FileParserError]': jellyfish/seq_qual_parser.cc:31:5: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::fastq_seq_qual_parser::FastqSeqQualParserError]': jellyfish/seq_qual_parser.cc:47:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' ./jellyfish/err.hpp: In instantiation of 'err::raise_t::~raise_t() [with err_t = jellyfish::simple_growing_array::SimpleGrowingArrayError]': ./jellyfish/simple_growing_array.hpp:55:9: required from 'void jellyfish::simple_growing_array::resize() [with T = char]' 139 | #define eraise(e) if(1) err::raise_t() | ^~~~~~~~~~~~ ./jellyfish/simple_growing_array.hpp:27:53: required from 'jellyfish::simple_growing_array::simple_growing_array(size_t) [with T = char; size_t = long unsigned int]' 27 | _capacity(capacity / 2), _size(0), _data(0) { resize(); } | ^~~~~~ ./jellyfish/seq_qual_parser.hpp:53:41: required from here 53 | seq_qual_parser(fd, path, str, len) {} | ^ ./jellyfish/err.hpp:123:18: warning: 'throw' will always call 'terminate' [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to 'noexcept' libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/seq_qual_parser.cc -o jellyfish/seq_qual_parser.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/backtrace.lo jellyfish/backtrace.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc -fPIC -DPIC -o jellyfish/.libs/backtrace.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/backtrace.cc -o jellyfish/backtrace.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/floats.lo jellyfish/floats.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc -fPIC -DPIC -o jellyfish/.libs/floats.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/floats.cc -o jellyfish/floats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dbg.lo jellyfish/dbg.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc -fPIC -DPIC -o jellyfish/.libs/dbg.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dbg.cc -o jellyfish/dbg.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/allocators_mmap.lo jellyfish/allocators_mmap.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc -fPIC -DPIC -o jellyfish/.libs/allocators_mmap.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/allocators_mmap.cc -o jellyfish/allocators_mmap.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/dna_codes.lo jellyfish/dna_codes.cc libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc -fPIC -DPIC -o jellyfish/.libs/dna_codes.o libtool: compile: powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c jellyfish/dna_codes.cc -o jellyfish/dna_codes.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:1:0 -Wl,-z,relro -Wl,-z,now -o libjellyfish-1.1.la -rpath /usr/lib/powerpc64le-linux-gnu jellyfish/square_binary_matrix.lo jellyfish/err.lo jellyfish/misc.lo jellyfish/storage.lo jellyfish/thread_exec.lo jellyfish/time.lo jellyfish/file_parser.lo jellyfish/read_parser.lo jellyfish/parse_read.lo jellyfish/half.lo jellyfish/mapped_file.lo jellyfish/parse_dna.lo jellyfish/parse_quake.lo jellyfish/parse_qual_dna.lo jellyfish/sequence_parser.lo jellyfish/seq_qual_parser.lo jellyfish/backtrace.lo jellyfish/floats.lo jellyfish/dbg.lo jellyfish/allocators_mmap.lo jellyfish/dna_codes.lo libtool: link: powerpc64le-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/powerpc64le-linux-gnu/15/../../../../powerpc64le-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/15/crtbeginS.o jellyfish/.libs/square_binary_matrix.o jellyfish/.libs/err.o jellyfish/.libs/misc.o jellyfish/.libs/storage.o jellyfish/.libs/thread_exec.o jellyfish/.libs/time.o jellyfish/.libs/file_parser.o jellyfish/.libs/read_parser.o jellyfish/.libs/parse_read.o jellyfish/.libs/half.o jellyfish/.libs/mapped_file.o jellyfish/.libs/parse_dna.o jellyfish/.libs/parse_quake.o jellyfish/.libs/parse_qual_dna.o jellyfish/.libs/sequence_parser.o jellyfish/.libs/seq_qual_parser.o jellyfish/.libs/backtrace.o jellyfish/.libs/floats.o jellyfish/.libs/dbg.o jellyfish/.libs/allocators_mmap.o jellyfish/.libs/dna_codes.o -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/15 -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/15/../../../../powerpc64le-linux-gnu/lib/../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/powerpc64le-linux-gnu/15/../../../../powerpc64le-linux-gnu/lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/powerpc64le-linux-gnu/15/crtendS.o /usr/lib/gcc-cross/powerpc64le-linux-gnu/15/../../../../powerpc64le-linux-gnu/lib/../lib/crtn.o -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libjellyfish-1.1.so.1 -o .libs/libjellyfish-1.1.so.1.0.1 libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so.1" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so.1") libtool: link: (cd ".libs" && rm -f "libjellyfish-1.1.so" && ln -s "libjellyfish-1.1.so.1.0.1" "libjellyfish-1.1.so") libtool: link: powerpc64le-linux-gnu-ar cr .libs/libjellyfish-1.1.a jellyfish/square_binary_matrix.o jellyfish/err.o jellyfish/misc.o jellyfish/storage.o jellyfish/thread_exec.o jellyfish/time.o jellyfish/file_parser.o jellyfish/read_parser.o jellyfish/parse_read.o jellyfish/half.o jellyfish/mapped_file.o jellyfish/parse_dna.o jellyfish/parse_quake.o jellyfish/parse_qual_dna.o jellyfish/sequence_parser.o jellyfish/seq_qual_parser.o jellyfish/backtrace.o jellyfish/floats.o jellyfish/dbg.o jellyfish/allocators_mmap.o jellyfish/dna_codes.o libtool: link: powerpc64le-linux-gnu-ranlib .libs/libjellyfish-1.1.a libtool: link: ( cd ".libs" && rm -f "libjellyfish-1.1.la" && ln -s "../libjellyfish-1.1.la" "libjellyfish-1.1.la" ) /bin/bash ./libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,--as-needed -latomic -Wl,-z,relro -Wl,-z,now -o bin/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o libjellyfish-1.1.la libtool: link: powerpc64le-linux-gnu-g++ -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/jellyfish jellyfish/jellyfish.o jellyfish/stats_main.o jellyfish/hash_merge.o jellyfish/mer_counter.o jellyfish/histo_main.o jellyfish/dump_main.o jellyfish/query_main.o jellyfish/dump_fastq_main.o jellyfish/histo_fastq_main.o jellyfish/cite.o jellyfish/hash_fastq_merge.o jellyfish/yaggo.o -lpthread -latomic ./.libs/libjellyfish-1.1.so make[3]: Leaving directory '/<>' powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/generate_sequence.o jellyfish/generate_sequence.cc In file included from jellyfish/generate_sequence.cc:22: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In file included from jellyfish/generate_sequence.cc:24: In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘int main(int, char**)’ at jellyfish/generate_sequence.cc:76:39: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from jellyfish/generate_sequence.cc:23: ./jellyfish/misc.hpp: In function ‘int main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘int main(int, char**)’ at jellyfish/generate_sequence.cc:76:57: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const uint64_t*, int)’ at ./jellyfish/square_binary_matrix.hpp:71:80, inlined from ‘int main(int, char**)’ at jellyfish/generate_sequence.cc:80:50: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In function ‘int main(int, char**)’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o jellyfish/mersenne.o jellyfish/mersenne.cpp /bin/bash ./libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o libjellyfish-1.1.la libtool: link: powerpc64le-linux-gnu-g++ -g -O3 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/generate_sequence jellyfish/generate_sequence.o jellyfish/mersenne.o -lpthread ./.libs/libjellyfish-1.1.so powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_offsets_key_value.o `test -f 'unit_tests/test_offsets_key_value.cc' || echo './'`unit_tests/test_offsets_key_value.cc powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_simple_circular_buffer.o `test -f 'unit_tests/test_simple_circular_buffer.cc' || echo './'`unit_tests/test_simple_circular_buffer.cc powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/bin_test_all-test_square_binary_matrix.o `test -f 'unit_tests/test_square_binary_matrix.cc' || echo './'`unit_tests/test_square_binary_matrix.cc unit_tests/test_square_binary_matrix.cc: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: unit_tests/test_square_binary_matrix.cc:81:48: warning: catching polymorphic type ‘class SquareBinaryMatrix::SingularMatrix’ by value [-Wcatch-value=] 81 | } catch(SquareBinaryMatrix::SingularMatrix e) { | ^ In file included from ./jellyfish/square_binary_matrix.hpp:27, from unit_tests/test_square_binary_matrix.cc:3: ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::ErrorAllocation]’: ./jellyfish/square_binary_matrix.hpp:45:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ ./jellyfish/err.hpp: In instantiation of ‘err::raise_t::~raise_t() [with err_t = SquareBinaryMatrix::MismatchingSize]’: ./jellyfish/square_binary_matrix.hpp:54:7: required from here 139 | #define eraise(e) if(1) err::raise_t() | ^ ./jellyfish/err.hpp:123:18: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 123 | ~raise_t() { throw err_t(oss.str()); } | ^~~~~~~~~~~~~~~~~~~~~~ ./jellyfish/err.hpp:123:18: note: in C++11 destructors default to ‘noexcept’ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:32:34: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ In file included from ./jellyfish/square_binary_matrix.hpp:28: ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:37:33: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:38:35: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:47:31: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:48:13: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(const SquareBinaryMatrix&)’ at ./jellyfish/square_binary_matrix.hpp:64:74, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:52:32: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ In member function ‘uint64_t* SquareBinaryMatrix::first_alloc(size_t)’, inlined from ‘SquareBinaryMatrix::SquareBinaryMatrix(int)’ at ./jellyfish/square_binary_matrix.hpp:61:62, inlined from ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’ at unit_tests/test_square_binary_matrix.cc:73:32: ./jellyfish/square_binary_matrix.hpp:44:5: warning: ‘*&ptr’ may be used uninitialized [-Wmaybe-uninitialized] 44 | if(!res) | ^~ ./jellyfish/misc.hpp: In member function ‘virtual void SquareBinaryMatrix_Initialization_Test::TestBody()’: ./jellyfish/misc.hpp:106:11: note: ‘*&ptr’ was declared here 106 | Tptr ptr; | ^~~ powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_main_a-gtest_main.o `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc powerpc64le-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests/gtest -I./unit_tests/gtest/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_a-gtest-all.o `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc In file included from ./unit_tests/gtest/include/gtest/internal/gtest-internal.h:40, from ./unit_tests/gtest/include/gtest/gtest.h:57, from unit_tests/gtest/src/gtest-all.cc:39: ./unit_tests/gtest/include/gtest/internal/gtest-port.h: In static member function ‘static const char* testing::internal::String::CloneCString(const char*)’: ./unit_tests/gtest/include/gtest/internal/gtest-port.h:1615:17: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 1615 | return strncpy(dest, src, n); | ^ In file included from unit_tests/gtest/src/gtest-all.cc:42: ./unit_tests/gtest/src/gtest.cc:851:39: note: length computed here 851 | NULL : CloneString(c_str, strlen(c_str)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ rm -f libgtest.a powerpc64le-linux-gnu-ar cr libgtest.a unit_tests/gtest/src/libgtest_a-gtest-all.o powerpc64le-linux-gnu-ranlib libgtest.a rm -f libgtest_main.a powerpc64le-linux-gnu-ar cr libgtest_main.a unit_tests/gtest/src/libgtest_main_a-gtest_main.o libgtest.a powerpc64le-linux-gnu-ranlib libgtest_main.a /bin/bash ./libtool --tag=CXX --mode=link powerpc64le-linux-gnu-g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -lpthread -Wl,-z,relro -Wl,-z,now -o bin/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o libgtest_main.a libgtest.a libjellyfish-1.1.la libtool: link: powerpc64le-linux-gnu-g++ -I./unit_tests/gtest/include -I./unit_tests/gtest -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/test_all unit_tests/bin_test_all-test_offsets_key_value.o unit_tests/bin_test_all-test_simple_circular_buffer.o unit_tests/bin_test_all-test_square_binary_matrix.o -lpthread libgtest_main.a libgtest.a ./.libs/libjellyfish-1.1.so make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install --destdir=debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libjellyfish-1.1.la '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.so.1.0.1 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.so.1.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1 || { rm -f libjellyfish-1.1.so.1 && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so.1; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu && { ln -s -f libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so || { rm -f libjellyfish-1.1.so && ln -s libjellyfish-1.1.so.1.0.1 libjellyfish-1.1.so; }; }) libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.lai /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.la libtool: install: /usr/bin/install -c .libs/libjellyfish-1.1.a /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.a libtool: install: powerpc64le-linux-gnu-ranlib /<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc64le-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c bin/jellyfish '/<>/debian/tmp/usr/bin' libtool: warning: 'libjellyfish-1.1.la' has not been installed in '/usr/lib/powerpc64le-linux-gnu' libtool: install: /usr/bin/install -c bin/.libs/jellyfish /<>/debian/tmp/usr/bin/jellyfish /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish' /usr/bin/install -c -m 644 jellyfish/allocators_malloc.hpp jellyfish/allocators_mmap.hpp jellyfish/allocators_shm.hpp jellyfish/atomic_gcc.hpp jellyfish/compacted_dumper.hpp jellyfish/compacted_hash.hpp jellyfish/concurrent_queues.hpp jellyfish/direct_indexing_array.hpp jellyfish/direct_sorted_dumper.hpp jellyfish/divisor.hpp jellyfish/dumper.hpp jellyfish/hash_function.hpp jellyfish/hash.hpp jellyfish/heap.hpp jellyfish/invertible_hash_array.hpp jellyfish/locking_hash_counters.hpp jellyfish/locks_pthread.hpp jellyfish/mapped_file.hpp jellyfish/mer_counting.hpp jellyfish/err.hpp jellyfish/misc.hpp jellyfish/offsets_key_value.hpp jellyfish/reversible_hash_function.hpp jellyfish/sorted_dumper.hpp jellyfish/square_binary_matrix.hpp jellyfish/storage.hpp jellyfish/thread_exec.hpp jellyfish/time.hpp jellyfish/token_ring.hpp jellyfish/raw_dumper.hpp jellyfish/capped_integer.hpp jellyfish/aligned_values_array.hpp jellyfish/fastq_dumper.hpp jellyfish/floats.hpp jellyfish/circular_buffer.hpp jellyfish/counter.hpp jellyfish/parse_quake.hpp jellyfish/parse_dna.hpp jellyfish/parse_qual_dna.hpp jellyfish/file_parser.hpp '/<>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish' /usr/bin/install -c -m 644 jellyfish/sequence_parser.hpp jellyfish/seq_qual_parser.hpp jellyfish/double_fifo_input.hpp jellyfish/read_parser.hpp jellyfish/parse_read.hpp jellyfish/simple_growing_array.hpp jellyfish/toFloat.h jellyfish/eLut.h jellyfish/dbg.hpp jellyfish/half.h jellyfish/backtrace.hpp jellyfish/dna_codes.hpp jellyfish/simple_circular_buffer.hpp '/<>/debian/tmp/usr/include/jellyfish-1.1.11/jellyfish' /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'doc/jellyfish.man' '/<>/debian/tmp/usr/share/man/man1/jellyfish.1' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 jellyfish-1.1.pc '/<>/debian/tmp/usr/lib/powerpc64le-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' mkdir -p debian/tmp/usr/lib/jellyfish1 mv debian/tmp/usr/bin/* debian/tmp/usr/lib/jellyfish1 dh_install find debian -name "*.a" -delete find debian -name "*.la" -delete find debian -name "*.so" -delete find debian -name "pkgconfig" -type d | xargs rm -rf # there is no development package for this version any more - remove header files to keep dh_missing happy rm -rf debian/tmp/usr/include/jellyfish* make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman mv debian/jellyfish1/usr/share/man/man1/jellyfish.1 debian/jellyfish1/usr/share/man/man1/jellyfish1.1 make[1]: Leaving directory '/<>' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'jellyfish1' in '../jellyfish1_1.1.11-10_ppc64el.deb'. dpkg-deb: building package 'jellyfish1-dbgsym' in '../jellyfish1-dbgsym_1.1.11-10_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../jellyfish1_1.1.11-10_ppc64el.buildinfo dpkg-genchanges --build=any -O../jellyfish1_1.1.11-10_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-02-24T20:41:22Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ -------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ jellyfish1_1.1.11-10_ppc64el.changes: ------------------------------------- Format: 1.8 Date: Sun, 22 Dec 2024 22:27:11 +0100 Source: jellyfish1 Binary: jellyfish1 jellyfish1-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 1.1.11-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: jellyfish1 - count k-mers in DNA sequences Closes: 1045535 Changes: jellyfish1 (1.1.11-10) unstable; urgency=medium . * Fix clean target Closes: #1045535 * Standards-Version: 4.7.0 (routine-update) * d/copyright: review thanks to lrc * Secure URL in watch file Checksums-Sha1: 21f3940dafc295bdf6439e6aa2474237690ecf36 1195628 jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 5a9b72820988bca6aad4420c33c2d5511f37a16b 4848 jellyfish1_1.1.11-10_ppc64el.buildinfo 723e55d6ca99823c5dd384566c01b5a38e67bd99 143168 jellyfish1_1.1.11-10_ppc64el.deb Checksums-Sha256: c035bfd42dca02632927aff4e7ff18e6295a3a1d1a16079d7e4608671dd25c78 1195628 jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 281c1219f63c7f42d5a61f1a53bb9281d198c53698e194b197310a42607b5b8f 4848 jellyfish1_1.1.11-10_ppc64el.buildinfo 99d33ecdd7971a65b9271e47c84fb61dcf15c1bf71840c1bb2a1f5be0c267992 143168 jellyfish1_1.1.11-10_ppc64el.deb Files: 2d19155a0b3ee2010b65caa36cd8b1a5 1195628 debug optional jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 860a2dd2952789db896a3828cf5cb648 4848 science optional jellyfish1_1.1.11-10_ppc64el.buildinfo 2b7466a33290086a304067db3bee3fbd 143168 science optional jellyfish1_1.1.11-10_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: jellyfish1 Binary: jellyfish1 jellyfish1-dbgsym Architecture: ppc64el Version: 1.1.11-10 Checksums-Md5: 2d19155a0b3ee2010b65caa36cd8b1a5 1195628 jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 2b7466a33290086a304067db3bee3fbd 143168 jellyfish1_1.1.11-10_ppc64el.deb Checksums-Sha1: 21f3940dafc295bdf6439e6aa2474237690ecf36 1195628 jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 723e55d6ca99823c5dd384566c01b5a38e67bd99 143168 jellyfish1_1.1.11-10_ppc64el.deb Checksums-Sha256: c035bfd42dca02632927aff4e7ff18e6295a3a1d1a16079d7e4608671dd25c78 1195628 jellyfish1-dbgsym_1.1.11-10_ppc64el.deb 99d33ecdd7971a65b9271e47c84fb61dcf15c1bf71840c1bb2a1f5be0c267992 143168 jellyfish1_1.1.11-10_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 24 Feb 2026 20:41:22 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-2), binutils (= 2.46-2), binutils-common (= 2.46-2), binutils-x86-64-linux-gnu (= 2.46-2), bsdextrautils (= 2.41.3-4), build-essential (= 12.12), bzip2 (= 1.0.8-6+b1), coreutils (= 9.7-3), cpp (= 4:15.2.0-5), cpp-15 (= 15.2.0-14), cpp-15-x86-64-linux-gnu (= 15.2.0-14), cpp-x86-64-linux-gnu (= 4:15.2.0-5), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.30), debianutils (= 5.23.2), dh-autoreconf (= 21+nmu1), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.5), dpkg-dev (= 1.23.5), dwz (= 0.16-2), file (= 1:5.46-5+b1), findutils (= 4.10.0-3), g++ (= 4:15.2.0-5), g++-15 (= 15.2.0-14), g++-15-x86-64-linux-gnu (= 15.2.0-14), g++-x86-64-linux-gnu (= 4:15.2.0-5), gcc (= 4:15.2.0-5), gcc-15 (= 15.2.0-14), gcc-15-base (= 15.2.0-14), gcc-15-x86-64-linux-gnu (= 15.2.0-14), gcc-x86-64-linux-gnu (= 4:15.2.0-5), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-10), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-14), libatomic1 (= 15.2.0-14), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-2), libblkid1 (= 2.41.3-4), libbz2-1.0 (= 1.0.8-6+b1), libc-bin (= 2.42-13), libc-dev-bin (= 2.42-13), libc-gconv-modules-extra (= 2.42-13), libc6 (= 2.42-13), libc6-dev (= 2.42-13), libcap-ng0 (= 0.9.1-1), libcap2 (= 1:2.75-10+b5), libcc1-0 (= 15.2.0-14), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.46-2), libctf0 (= 2.46-2), libdb5.3t64 (= 5.3.28+dfsg2-11), libdebconfclient0 (= 0.282+b2), libdebhelper-perl (= 13.30), libdpkg-perl (= 1.23.5), libelf1t64 (= 0.194-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-14), libgcc-s1 (= 15.2.0-14), libgdbm-compat4t64 (= 1.26-1+b1), libgdbm6t64 (= 1.26-1+b1), libgmp10 (= 2:6.3.0+dfsg-5+b1), libgomp1 (= 15.2.0-14), libgprofng0 (= 2.46-2), libhwasan0 (= 15.2.0-14), libisl23 (= 0.27-1+b1), libitm1 (= 15.2.0-14), libjansson4 (= 2.14-2+b4), liblsan0 (= 15.2.0-14), liblzma5 (= 5.8.2-2), libmagic-mgc (= 1:5.46-5+b1), libmagic1t64 (= 1:5.46-5+b1), libmd0 (= 1.1.0-2+b2), libmount1 (= 2.41.3-4), libmpc3 (= 1.3.1-2+b1), libmpfr6 (= 4.2.2-2+b1), libpam-modules (= 1.7.0-5+b1), libpam-modules-bin (= 1.7.0-5+b1), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b1), libpcre2-8-0 (= 10.46-1+b1), libperl5.40 (= 5.40.1-7), libpipeline1 (= 1.5.8-2), libquadmath0 (= 15.2.0-14), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.9-4+b1), libsframe3 (= 2.46-2), libsmartcols1 (= 2.41.3-4), libssl3t64 (= 3.5.5-1), libstdc++-15-dev (= 15.2.0-14), libstdc++6 (= 15.2.0-14), libsystemd0 (= 259.1-1), libtinfo6 (= 6.6+20251231-1), libtool (= 2.5.4-9), libtsan2 (= 15.2.0-14), libubsan1 (= 15.2.0-14), libuchardet0 (= 0.0.8-2+b1), libudev1 (= 259.1-1), libunistring5 (= 1.3-2+b1), libuuid1 (= 2.41.3-4), libxml2-16 (= 2.15.1+dfsg-2+b1), libzstd1 (= 1.5.7+dfsg-3+b1), linux-libc-dev (= 6.18.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260129-1), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1), openssl-provider-legacy (= 3.5.5-1), patch (= 2.8-2), perl (= 5.40.1-7), perl-base (= 5.40.1-7), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-4), util-linux (= 2.41.3-4), xz-utils (= 5.8.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1734902831" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ jellyfish1-dbgsym_1.1.11-10_ppc64el.deb --------------------------------------- new Debian package, version 2.0. size 1195628 bytes: control archive=652 bytes. 430 bytes, 12 lines control 304 bytes, 3 lines md5sums Package: jellyfish1-dbgsym Source: jellyfish1 Version: 1.1.11-10 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 1555 Depends: jellyfish1 (= 1.1.11-10) Section: debug Priority: optional Description: debug symbols for jellyfish1 Build-Ids: 667641bca87b3b8c2992b6640ba891f4929656d0 703542c582cdef53a517f373fefef5bfed59e673 drwxr-xr-x root/root 0 2024-12-22 21:27 ./ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/.build-id/66/ -rw-r--r-- root/root 1308272 2024-12-22 21:27 ./usr/lib/debug/.build-id/66/7641bca87b3b8c2992b6640ba891f4929656d0.debug drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/.build-id/70/ -rw-r--r-- root/root 242496 2024-12-22 21:27 ./usr/lib/debug/.build-id/70/3542c582cdef53a517f373fefef5bfed59e673.debug drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/ -rw-r--r-- root/root 27080 2024-12-22 21:27 ./usr/lib/debug/.dwz/powerpc64le-linux-gnu/jellyfish1.debug drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-12-22 21:27 ./usr/share/doc/jellyfish1-dbgsym -> jellyfish1 jellyfish1_1.1.11-10_ppc64el.deb -------------------------------- new Debian package, version 2.0. size 143168 bytes: control archive=1360 bytes. 1315 bytes, 28 lines control 509 bytes, 7 lines md5sums 42 bytes, 1 lines shlibs 66 bytes, 2 lines triggers Package: jellyfish1 Version: 1.1.11-10 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 748 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Enhances: kraken Section: science Priority: optional Homepage: https://www.cbcb.umd.edu/software/jellyfish/ Description: count k-mers in DNA sequences JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. . JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. . This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package. drwxr-xr-x root/root 0 2024-12-22 21:27 ./ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/bin/ lrwxrwxrwx root/root 0 2024-12-22 21:27 ./usr/bin/jellyfish1 -> ../lib/jellyfish1/jellyfish drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/jellyfish1/ -rwxr-xr-x root/root 334368 2024-12-22 21:27 ./usr/lib/jellyfish1/jellyfish drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/lib/powerpc64le-linux-gnu/ lrwxrwxrwx root/root 0 2024-12-22 21:27 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.so.1 -> libjellyfish-1.1.so.1.0.1 -rw-r--r-- root/root 397544 2024-12-22 21:27 ./usr/lib/powerpc64le-linux-gnu/libjellyfish-1.1.so.1.0.1 drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/doc/jellyfish1/ -rw-r--r-- root/root 2333 2013-05-29 19:45 ./usr/share/doc/jellyfish1/README -rw-r--r-- root/root 752 2024-12-22 21:27 ./usr/share/doc/jellyfish1/changelog.Debian.gz -rw-r--r-- root/root 3457 2024-12-22 21:27 ./usr/share/doc/jellyfish1/copyright drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 66 2024-12-22 21:27 ./usr/share/lintian/overrides/jellyfish1 drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/man/ drwxr-xr-x root/root 0 2024-12-22 21:27 ./usr/share/man/man1/ -rw-r--r-- root/root 4556 2024-12-22 21:27 ./usr/share/man/man1/jellyfish1.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1302 B] Get:5 copy:/<>/apt_archive ./ Packages [1385 B] Fetched 3302 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl python3 readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common liblist-someutils-xs-perl libfreezethaw-perl libgpm2 libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-libmagic-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libfyaml0 libgcrypt20 libglib2.0-0t64 libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0 libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 libldap2 liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libncursesw6 libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0 libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libproc2-0 libpsl5t64 libreadline8t64 libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libssh2-1t64 libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip procps readline-common sbuild-build-depends-lintian-dummy:ppc64el shared-mime-info t1utils ucf unzip 0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded. Need to get 24.4 MB of archives. After this operation, 93.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9+b1 [66.1 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9+b1 [883 kB] Get:6 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-4 [74.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.5-1 [1500 kB] Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20260223 [158 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9532 B] Get:10 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:11 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.87.2-3 [1552 kB] Get:14 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4+b1 [110 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.21.0-2 [50.4 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.12-3 [1520 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b8 [25.1 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b1 [9784 B] Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.68.0-1 [79.8 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b2 [59.8 kB] Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3+b1 [60.7 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1+b1 [245 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.19.0~rc2-2 [407 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9.4-1 [312 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1+b1 [133 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2 [63.7 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.2-1 [227 kB] Get:41 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.2-1 [566 kB] Get:42 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.58-2 [89.7 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2+b1 [62.1 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3+b1 [871 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:47 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-5 [129 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b2 [136 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3+b1 [23.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-9 [920 kB] Get:51 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-5 [639 kB] Get:52 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.20.1-1 [3319 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b3 [10.6 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-3 [15.3 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b5 [22.5 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:63 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:68 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:72 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:82 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.86-1 [24.1 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:102 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:103 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libfile-libmagic-perl amd64 1.23-2+b2 [31.1 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:112 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:118 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:119 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:120 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [342 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.098-1 [229 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:123 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:131 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:132 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:133 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:134 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.16~rc1-3 [39.8 kB] Get:135 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b2 [57.4 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1+b1 [36.5 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:138 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-3 [6996 B] Get:143 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.1-1 [143 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4 [11.0 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b1 [12.5 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1+b1 [42.3 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:156 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB] Get:157 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB] Get:158 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B] Get:160 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b2 [174 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.46-1 [78.2 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.64-1 [19.0 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB] Get:170 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB] Get:172 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.13~rc1-3 [66.7 kB] Get:173 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:174 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB] Get:175 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:176 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:177 http://localhost:3142/debian unstable/main amd64 lintian all 2.130.0 [1068 kB] Preconfiguring packages ... Fetched 24.4 MB in 0s (123 MB/s) Selecting previously unselected package netbase. (Reading database ... 18818 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20251231-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20251231-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9+b1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9+b1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9+b1_amd64.deb ... Unpacking procps (2:4.0.4-9+b1) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.5.5-1_amd64.deb ... Unpacking openssl (3.5.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20260223_all.deb ... Unpacking ca-certificates (20260223) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../007-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../008-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../010-libffi8_3.5.2-3+b1_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-3+b1) ... Selecting previously unselected package libglib2.0-0t64:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../045-gpgconf_2.4.8-5_amd64.deb ... Unpacking gpgconf (2.4.8-5) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../046-libksba8_1.6.7-2+b2_amd64.deb ... Unpacking libksba8:amd64 (1.6.7-2+b2) ... Selecting previously unselected package libnpth0t64:amd64. 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Preparing to unpack .../095-libemail-address-xs-perl_1.05-1+b4_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b4) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../096-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../097-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../098-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../099-libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../100-libtext-glob-perl_0.11-3_all.deb ... 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Setting up libberkeleydb-perl:amd64 (0.66-2) ... Setting up plzip (1.13~rc1-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:amd64 (0.04-11+b5) ... Setting up libnpth0t64:amd64 (1.8-3+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b1) ... Setting up libunicode-utf8-perl (0.64-1) ... Setting up libmouse-perl:amd64 (2.6.1-1) ... Setting up libgpg-error0:amd64 (1.58-2) ... Setting up libdata-messagepack-perl (1.02-3) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libsub-identify-perl (0.14-4) ... Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.86-1) ... Setting up unzip (6.0-29) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libsqlite3-0:amd64 (3.46.1-9) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.904.0+ds-1) ... Setting up libio-interactive-perl (1.027-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.68.0-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:amd64 (1.11.2-3+b1) ... Setting up liblzo2-2:amd64 (2.10-3+b2) ... Setting up libtime-moment-perl (0.46-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libidn2-0:amd64 (2.3.8-4+b1) ... 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Setting up libproc-processtable-perl:amd64 (0.637-1+b1) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2) ... Setting up libassuan9:amd64 (3.0.2-2+b1) ... Setting up procps (2:4.0.4-9+b1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:amd64 (4.21.0-2) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libstemmer0d:amd64 (3.0.1-1+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1+b1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.5.5-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.3-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:amd64 (2.2.7-2.1+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up liburi-perl (5.34-2) ... Setting up iso-codes (4.20.1-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up libksba8:amd64 (1.6.7-2+b2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b2) ... Setting up libnet-http-perl (6.24-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-3) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 144 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.87.2-3) ... No schema files found: doing nothing. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.49-1) ... Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0052) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.31-1) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up gpgconf (2.4.8-5) ... Setting up libio-socket-ssl-perl (2.098-1) ... Setting up gpg (2.4.8-5) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhtml-form-perl (6.13-1) ... Setting up libgnutls30t64:amd64 (3.8.12-3) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxmlb2:amd64 (0.3.24-2) ... Setting up libparams-classify-perl:amd64 (0.015-2+b5) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3+b1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up libcurl3t64-gnutls:amd64 (8.19.0~rc2-2) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libappstream5:amd64 (1.1.2-1) ... Setting up appstream (1.1.2-1) ... ✔ Metadata cache was updated successfully. Setting up libmoox-aliases-perl (0.001006-3) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.81-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.20-1) ... Setting up lintian (2.130.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 75 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 9 Job: jellyfish1_1.1.11-10 Lintian: pass Machine Architecture: amd64 Package: jellyfish1 Package-Time: 100 Source-Version: 1.1.11-10 Space: n/a Status: successful Version: 1.1.11-10 -------------------------------------------------------------------------------- Finished at 2026-02-24T20:41:22Z Build needed 00:01:40, no disk space