sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kallisto 0.45.1+dfsg-1 (s390x) Tue, 06 Aug 2019 20:57:08 +0000 | +==============================================================================+ Package: kallisto Version: 0.45.1+dfsg-1 Source Version: 0.45.1+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5e946d6b-4647-4faa-bdc6-dccf65fb5193' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-06-0817.30.pdiff [22.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-06-1429.56.pdiff [15.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-06-1429.56.pdiff [15.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-06-0817.30.pdiff [8472 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-06-1429.56.pdiff [15.0 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-06-1429.56.pdiff [15.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8059 kB] Fetched 8326 kB in 2s (4268 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: linux-libc-dev 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1227 kB of archives. After this operation, 198 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev amd64 5.2.6-1 [1227 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1227 kB in 0s (34.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_5.2.6-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.2.6-1) over (4.19.37-6) ... Setting up linux-libc-dev:amd64 (5.2.6-1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kallisto' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kallisto.git Please use: git clone https://salsa.debian.org/med-team/kallisto.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 852 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kallisto 0.45.1+dfsg-1 (dsc) [2103 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kallisto 0.45.1+dfsg-1 (tar) [845 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kallisto 0.45.1+dfsg-1 (diff) [5040 B] Fetched 852 kB in 0s (35.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kallisto-fHT3Gs/kallisto-0.45.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-fHT3Gs' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-DcRJvT/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-DcRJvT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DcRJvT/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-DcRJvT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DcRJvT/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-DcRJvT/apt_archive ./ Packages [452 B] Fetched 1770 B in 0s (95.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-9-cross-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-9-cross-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-DcRJvT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.32.51.20190727-1 [2165 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-19cross1 [5933 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-10cross3 [1311 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:9.1.0-8cross1 [24.4 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 9.1.0-8cross1 [79.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 9.1.0-8cross1 [26.4 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 9.1.0-8cross1 [8004 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.1.0-8cross1 [337 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 9.1.0-8cross1 [449 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 9.1.0-8cross1 [119 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-19cross1 [646 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-19cross1 [6376 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.37-5cross3 [1270 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-10cross3 [2256 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-19cross1 [1489 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-19cross1 [6512 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (53.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11983 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../37-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../38-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../39-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../40-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../41-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../42-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../43-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../44-crossbuild-essential-s390x_12.6_all.deb ... Unpacking crossbuild-essential-s390x (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../45-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.32.51.20190727-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libc6-s390x-cross (2.28-10cross3) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.37-5cross3) ... Setting up cross-config (2.6.15-3) ... Setting up cpp-8-s390x-linux-gnu (8.3.0-19cross1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up libitm1-s390x-cross (9.1.0-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-10cross3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (9.1.0-8cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:9.1.0-8cross1) ... Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ... Setting up libstdc++6-s390x-cross (9.1.0-8cross1) ... Setting up libatomic1-s390x-cross (9.1.0-8cross1) ... Setting up libasan5-s390x-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.3.0-19cross1) ... Setting up gcc-8-s390x-linux-gnu (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.3.0-19cross1) ... Setting up g++-8-s390x-linux-gnu (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up g++-s390x-linux-gnu (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-s390x (12.6) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-DcRJvT/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-DcRJvT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DcRJvT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-DcRJvT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DcRJvT/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-DcRJvT/apt_archive ./ Packages [569 B] Fetched 2015 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-DcRJvT/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15097 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), cmake, libhdf5-dev, libhts-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~), cmake, libhdf5-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-kallisto-dummy' in '/<>/resolver-DcRJvT/apt_archive/sbuild-build-depends-kallisto-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kallisto-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-DcRJvT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DcRJvT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-DcRJvT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DcRJvT/apt_archive ./ Sources [651 B] Get:5 copy:/<>/resolver-DcRJvT/apt_archive ./ Packages [732 B] Fetched 2346 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install kallisto build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gcc-9-base:s390x gettext gettext-base groff-base hdf5-helpers:s390x intltool-debian libaec-dev:s390x libaec0:s390x libarchive-zip-perl libarchive13 libasan5:s390x libatomic1:s390x libbsd0 libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libcom-err2:s390x libcroco3 libcurl3-gnutls:s390x libcurl4 libdb5.3:s390x libdeflate0:s390x libelf1 libexpat1 libffi6:s390x libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libgcrypt20:s390x libgfortran5:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgpg-error0:s390x libgssapi-krb5-2 libgssapi-krb5-2:s390x libhdf5-103:s390x libhdf5-cpp-103:s390x libhdf5-dev:s390x libhogweed4:s390x libhts-dev:s390x libhts2:s390x libidn2-0:s390x libitm1:s390x libjpeg62-turbo:s390x libjpeg62-turbo-dev:s390x libjsoncpp1 libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x libldap-2.4-2 libldap-2.4-2:s390x libldap-common liblzma-dev:s390x liblzma5:s390x libncurses6 libnettle6:s390x libnghttp2-14 libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libprocps7 libpsl5 libpsl5:s390x librhash0 librtmp1 librtmp1:s390x libsasl2-2 libsasl2-2:s390x libsasl2-modules-db libsasl2-modules-db:s390x libsigsegv2 libssh2-1 libssh2-1:s390x libssl1.1 libssl1.1:s390x libstdc++-8-dev:s390x libstdc++6:s390x libsub-override-perl libsz2:s390x libtasn1-6:s390x libtool libubsan1:s390x libuchardet0 libunistring2:s390x libuv1 linux-libc-dev:s390x lsb-base m4 man-db po-debconf procps zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x rng-tools:s390x gnutls-bin:s390x krb5-doc krb5-user krb5-doc:s390x krb5-user:s390x libhdf5-doc:s390x liblzma-doc:s390x libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:s390x ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:s390x krb5-locales krb5-locales:s390x libgpm2 publicsuffix publicsuffix:s390x libsasl2-modules libsasl2-modules:s390x libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gcc-9-base:s390x gettext gettext-base groff-base hdf5-helpers:s390x intltool-debian libaec-dev:s390x libaec0:s390x libarchive-zip-perl libarchive13 libasan5:s390x libatomic1:s390x libbsd0 libbz2-1.0:s390x libc6:s390x libc6-dev:s390x libcom-err2:s390x libcroco3 libcurl3-gnutls:s390x libcurl4 libdb5.3:s390x libdeflate0:s390x libelf1 libexpat1 libffi6:s390x libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libgcrypt20:s390x libgfortran5:s390x libglib2.0-0 libgmp10:s390x libgnutls30:s390x libgomp1:s390x libgpg-error0:s390x libgssapi-krb5-2 libgssapi-krb5-2:s390x libhdf5-103:s390x libhdf5-cpp-103:s390x libhdf5-dev:s390x libhogweed4:s390x libhts-dev:s390x libhts2:s390x libidn2-0:s390x libitm1:s390x libjpeg62-turbo:s390x libjpeg62-turbo-dev:s390x libjsoncpp1 libk5crypto3 libk5crypto3:s390x libkeyutils1 libkeyutils1:s390x libkrb5-3 libkrb5-3:s390x libkrb5support0 libkrb5support0:s390x libldap-2.4-2 libldap-2.4-2:s390x libldap-common liblzma-dev:s390x liblzma5:s390x libncurses6 libnettle6:s390x libnghttp2-14 libnghttp2-14:s390x libp11-kit0:s390x libpipeline1 libprocps7 libpsl5 libpsl5:s390x librhash0 librtmp1 librtmp1:s390x libsasl2-2 libsasl2-2:s390x libsasl2-modules-db libsasl2-modules-db:s390x libsigsegv2 libssh2-1 libssh2-1:s390x libssl1.1 libssl1.1:s390x libstdc++-8-dev:s390x libstdc++6:s390x libsub-override-perl libsz2:s390x libtasn1-6:s390x libtool libubsan1:s390x libuchardet0 libunistring2:s390x libuv1 linux-libc-dev:s390x lsb-base m4 man-db po-debconf procps sbuild-build-depends-kallisto-dummy:s390x zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. Need to get 45.2 MB of archives. After this operation, 175 MB of additional disk space will be used. Get:1 copy:/<>/resolver-DcRJvT/apt_archive ./ sbuild-build-depends-kallisto-dummy 0.invalid.0 [892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1 [226 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.37.0-1 [83.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.65.1-1 [335 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.7-1 [106 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.30.1-1 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-19 [192 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main s390x hdf5-helpers s390x 1.10.4+repack-10 [35.2 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:9.1.0-10 [24.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-10 [2505 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main s390x libaec0 s390x 1.0.4-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main s390x libsz2 s390x 1.0.4-1 [6628 B] Get:62 http://debian.oregonstate.edu/debian unstable/main s390x libaec-dev s390x 1.0.4-1 [19.6 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.1.0-10 [344 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 9.1.0-10 [8104 B] Get:65 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.6-9.2 [45.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.2.6-1 [1224 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-10 [2270 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main s390x libcom-err2 s390x 1.45.3-3 [70.2 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.1.2+dfsg-4 [238 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main s390x libnettle6 s390x 3.4.1-1 [225 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed4 s390x 3.4.1-1 [139 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-2 [367 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.2.0-1 [81.3 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main s390x libffi6 s390x 3.2.1-9 [18.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.15-2 [313 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.14-2 [51.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.9-3 [1056 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main s390x libkeyutils1 s390x 1.6-6 [14.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5support0 s390x 1.17-6 [63.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main s390x libk5crypto3 s390x 1.17-6 [114 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main s390x libssl1.1 s390x 1.1.1c-1 [1194 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main s390x libkrb5-3 s390x 1.17-6 [345 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main s390x libgssapi-krb5-2 s390x 1.17-6 [144 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6 [612 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-1 [68.0 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libsasl2-2 s390x 2.1.27+dfsg-1 [103 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libldap-2.4-2 s390x 2.4.48+dfsg-1 [215 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libnghttp2-14 s390x 1.37.0-1 [78.9 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libpsl5 s390x 0.20.2-2 [53.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1 [90.6 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2 [56.6 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libgpg-error0 s390x 1.36-7 [67.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libgcrypt20 s390x 1.8.4-5 [487 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libssh2-1 s390x 1.8.0-2.1 [132 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libcurl3-gnutls s390x 7.65.1-1 [312 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libdeflate0 s390x 1.2-1 [51.9 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 9.1.0-10 [81.1 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 9.1.0-10 [26.7 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 9.1.0-10 [489 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 9.1.0-10 [120 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-19 [642 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x libgfortran5 s390x 9.1.0-10 [330 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main s390x libhdf5-103 s390x 1.10.4+repack-10 [1154 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main s390x libhdf5-cpp-103 s390x 1.10.4+repack-10 [130 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1 [211 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main s390x libjpeg62-turbo s390x 1:1.5.2-2+b1 [131 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main s390x libjpeg62-turbo-dev s390x 1:1.5.2-2+b1 [200 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main s390x libhdf5-dev s390x 1.10.4+repack-10 [2397 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main s390x liblzma5 s390x 5.2.4-1 [151 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main s390x libhts2 s390x 1.9-11 [279 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main s390x liblzma-dev s390x 5.2.4-1 [209 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main s390x libhts-dev s390x 1.9-11 [4347 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-19 [1487 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.2 MB in 1s (66.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15097 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... Selecting previously unselected package gcc-9-base:s390x. Preparing to unpack .../006-gcc-9-base_9.1.0-10_s390x.deb ... Unpacking gcc-9-base:s390x (9.1.0-10) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../007-libncurses6_6.1+20190713-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../008-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../009-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../010-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../012-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../018-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../019-libarchive13_3.3.3-4_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../020-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../021-libkrb5support0_1.17-6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-6) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../022-libk5crypto3_1.17-6_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../023-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../024-libkrb5-3_1.17-6_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../025-libgssapi-krb5-2_1.17-6_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../028-libldap-common_2.4.48+dfsg-1_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../029-libldap-2.4-2_2.4.48+dfsg-1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../030-libnghttp2-14_1.37.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.37.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../031-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../032-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../033-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../034-libcurl4_7.65.1-1_amd64.deb ... Unpacking libcurl4:amd64 (7.65.1-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../035-libexpat1_2.2.7-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.7-1) ... Selecting previously unselected package libjsoncpp1:amd64. 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Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../043-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../046-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../047-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../048-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../049-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:s390x. Preparing to unpack .../054-gcc-8-base_8.3.0-19_s390x.deb ... Unpacking gcc-8-base:s390x (8.3.0-19) ... Selecting previously unselected package hdf5-helpers:s390x. Preparing to unpack .../055-hdf5-helpers_1.10.4+repack-10_s390x.deb ... Unpacking hdf5-helpers:s390x (1.10.4+repack-10) ... Selecting previously unselected package libgcc1:s390x. Preparing to unpack .../056-libgcc1_1%3a9.1.0-10_s390x.deb ... Unpacking libgcc1:s390x (1:9.1.0-10) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../057-libc6_2.28-10_s390x.deb ... Unpacking libc6:s390x (2.28-10) ... Selecting previously unselected package libaec0:s390x. Preparing to unpack .../058-libaec0_1.0.4-1_s390x.deb ... Unpacking libaec0:s390x (1.0.4-1) ... Selecting previously unselected package libsz2:s390x. Preparing to unpack .../059-libsz2_1.0.4-1_s390x.deb ... Unpacking libsz2:s390x (1.0.4-1) ... Selecting previously unselected package libaec-dev:s390x. Preparing to unpack .../060-libaec-dev_1.0.4-1_s390x.deb ... Unpacking libaec-dev:s390x (1.0.4-1) ... Selecting previously unselected package libasan5:s390x. Preparing to unpack .../061-libasan5_9.1.0-10_s390x.deb ... Unpacking libasan5:s390x (9.1.0-10) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../062-libatomic1_9.1.0-10_s390x.deb ... Unpacking libatomic1:s390x (9.1.0-10) ... Selecting previously unselected package libbz2-1.0:s390x. Preparing to unpack .../063-libbz2-1.0_1.0.6-9.2_s390x.deb ... Unpacking libbz2-1.0:s390x (1.0.6-9.2) ... Selecting previously unselected package linux-libc-dev:s390x. Preparing to unpack .../064-linux-libc-dev_5.2.6-1_s390x.deb ... Unpacking linux-libc-dev:s390x (5.2.6-1) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../065-libc6-dev_2.28-10_s390x.deb ... Unpacking libc6-dev:s390x (2.28-10) ... Selecting previously unselected package libcom-err2:s390x. Preparing to unpack .../066-libcom-err2_1.45.3-3_s390x.deb ... Unpacking libcom-err2:s390x (1.45.3-3) ... Selecting previously unselected package libgmp10:s390x. Preparing to unpack .../067-libgmp10_2%3a6.1.2+dfsg-4_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-4) ... Selecting previously unselected package libnettle6:s390x. Preparing to unpack .../068-libnettle6_3.4.1-1_s390x.deb ... Unpacking libnettle6:s390x (3.4.1-1) ... Selecting previously unselected package libhogweed4:s390x. Preparing to unpack .../069-libhogweed4_3.4.1-1_s390x.deb ... Unpacking libhogweed4:s390x (3.4.1-1) ... Selecting previously unselected package libunistring2:s390x. Preparing to unpack .../070-libunistring2_0.9.10-2_s390x.deb ... Unpacking libunistring2:s390x (0.9.10-2) ... Selecting previously unselected package libidn2-0:s390x. Preparing to unpack .../071-libidn2-0_2.2.0-1_s390x.deb ... Unpacking libidn2-0:s390x (2.2.0-1) ... Selecting previously unselected package libffi6:s390x. Preparing to unpack .../072-libffi6_3.2.1-9_s390x.deb ... Unpacking libffi6:s390x (3.2.1-9) ... Selecting previously unselected package libp11-kit0:s390x. Preparing to unpack .../073-libp11-kit0_0.23.15-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.15-2) ... Selecting previously unselected package libtasn1-6:s390x. Preparing to unpack .../074-libtasn1-6_4.14-2_s390x.deb ... Unpacking libtasn1-6:s390x (4.14-2) ... Selecting previously unselected package libgnutls30:s390x. Preparing to unpack .../075-libgnutls30_3.6.9-3_s390x.deb ... Unpacking libgnutls30:s390x (3.6.9-3) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../076-libkeyutils1_1.6-6_s390x.deb ... Unpacking libkeyutils1:s390x (1.6-6) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../077-libkrb5support0_1.17-6_s390x.deb ... Unpacking libkrb5support0:s390x (1.17-6) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../078-libk5crypto3_1.17-6_s390x.deb ... Unpacking libk5crypto3:s390x (1.17-6) ... Selecting previously unselected package libssl1.1:s390x. Preparing to unpack .../079-libssl1.1_1.1.1c-1_s390x.deb ... Unpacking libssl1.1:s390x (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../080-libkrb5-3_1.17-6_s390x.deb ... Unpacking libkrb5-3:s390x (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../081-libgssapi-krb5-2_1.17-6_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.17-6) ... Selecting previously unselected package libdb5.3:s390x. Preparing to unpack .../082-libdb5.3_5.3.28+dfsg1-0.6_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../083-libsasl2-modules-db_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../084-libsasl2-2_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:s390x. Preparing to unpack .../085-libldap-2.4-2_2.4.48+dfsg-1_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.48+dfsg-1) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../086-libnghttp2-14_1.37.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.37.0-1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../087-libpsl5_0.20.2-2_s390x.deb ... Unpacking libpsl5:s390x (0.20.2-2) ... Selecting previously unselected package zlib1g:s390x. Preparing to unpack .../088-zlib1g_1%3a1.2.11.dfsg-1_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.11.dfsg-1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../089-librtmp1_2.4+20151223.gitfa8646d.1-2_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libgpg-error0:s390x. 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Unpacking liblzma5:s390x (5.2.4-1) ... Selecting previously unselected package libhts2:s390x. Preparing to unpack .../108-libhts2_1.9-11_s390x.deb ... Unpacking libhts2:s390x (1.9-11) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../109-liblzma-dev_5.2.4-1_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.4-1) ... Selecting previously unselected package libhts-dev:s390x. Preparing to unpack .../110-libhts-dev_1.9-11_s390x.deb ... Unpacking libhts-dev:s390x (1.9-11) ... Selecting previously unselected package libstdc++-8-dev:s390x. Preparing to unpack .../111-libstdc++-8-dev_8.3.0-19_s390x.deb ... Unpacking libstdc++-8-dev:s390x (8.3.0-19) ... Selecting previously unselected package sbuild-build-depends-kallisto-dummy:s390x. Preparing to unpack .../112-sbuild-build-depends-kallisto-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-kallisto-dummy:s390x (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.7-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up hdf5-helpers:s390x (1.10.4+repack-10) ... Setting up libarchive13:amd64 (3.3.3-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.37.0-1) ... Setting up linux-libc-dev:s390x (5.2.6-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.30.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:s390x (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up gcc-9-base:s390x (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.65.1-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.13.4-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.28-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up libtasn1-6:s390x (4.14-2) ... Setting up libc6-dev:s390x (2.28-10) ... Setting up libbz2-1.0:s390x (1.0.6-9.2) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.6) ... Setting up libitm1:s390x (9.1.0-10) ... Setting up libkeyutils1:s390x (1.6-6) ... Setting up liblzma5:s390x (5.2.4-1) ... Setting up libgpg-error0:s390x (1.36-7) ... Setting up libgcc1:s390x (1:9.1.0-10) ... Setting up libssl1.1:s390x (1.1.1c-1) ... Setting up libnghttp2-14:s390x (1.37.0-1) ... Setting up libunistring2:s390x (0.9.10-2) ... Setting up libdeflate0:s390x (1.2-1) ... Setting up libgcrypt20:s390x (1.8.4-5) ... Setting up debhelper (12.2.3) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1) ... Setting up libffi6:s390x (3.2.1-9) ... Setting up libidn2-0:s390x (2.2.0-1) ... Setting up libcom-err2:s390x (1.45.3-3) ... Setting up libgomp1:s390x (9.1.0-10) ... Setting up libaec0:s390x (1.0.4-1) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Setting up libasan5:s390x (9.1.0-10) ... Setting up libjpeg62-turbo:s390x (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo-dev:s390x (1:1.5.2-2+b1) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:s390x (0.23.15-2) ... Setting up libatomic1:s390x (9.1.0-10) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libnettle6:s390x (3.4.1-1) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-1) ... Setting up libgfortran5:s390x (9.1.0-10) ... Setting up liblzma-dev:s390x (5.2.4-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1) ... Setting up libssh2-1:s390x (1.8.0-2.1) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libstdc++6:s390x (9.1.0-10) ... Setting up libsz2:s390x (1.0.4-1) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libhogweed4:s390x (3.4.1-1) ... Setting up libaec-dev:s390x (1.0.4-1) ... Setting up libgnutls30:s390x (3.6.9-3) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Setting up libhdf5-103:s390x (1.10.4+repack-10) ... Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libubsan1:s390x (9.1.0-10) ... Setting up libhdf5-cpp-103:s390x (1.10.4+repack-10) ... Setting up libldap-2.4-2:s390x (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:s390x (7.65.1-1) ... Setting up libhdf5-dev:s390x (1.10.4+repack-10) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgcc-8-dev:s390x (8.3.0-19) ... Setting up libstdc++-8-dev:s390x (8.3.0-19) ... Setting up libhts2:s390x (1.9-11) ... Setting up libhts-dev:s390x (1.9-11) ... Setting up sbuild-build-depends-kallisto-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-s390x-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-s390x-cross_9.1.0-8cross1 linux-libc-dev_5.2.6-1 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-s390x-linux-gnu_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-s390x-linux-gnu_8.3.0-19cross1 cpp-s390x-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.6 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-s390x-linux-gnu_8.3.0-19cross1 g++-s390x-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-8-s390x-linux-gnu_8.3.0-19cross1 gcc-8-s390x-linux-gnu-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-s390x-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_9.1.0-10 libasan5-s390x-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-s390x-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-s390x-cross_2.28-10cross3 libc6-s390x-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.65.1-1 libcurl4_7.65.1-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.2-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-s390x-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-s390x-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libgfortran5_9.1.0-10 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-3 libgomp1_9.1.0-10 libgomp1-s390x-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 libitm1-s390x-cross_9.1.0-8cross1 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-2 libncursesw6_6.1+20190713-2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_9.1.0-10 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-s390x-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-s390x-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libsz2_1.0.4-1 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-s390x-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.30.1-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.6-1 linux-libc-dev-s390x-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 lsb-base_10.2019051400 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-kallisto-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 4 20:07:01 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.45.1+dfsg-1.dsc dpkg-source: info: extracting kallisto in /<>/kallisto-0.45.1+dfsg dpkg-source: info: unpacking kallisto_0.45.1+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.45.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-5e946d6b-4647-4faa-bdc6-dccf65fb5193 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.45.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kallisto-0.45.1+dfsg' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- Check for working C compiler: /usr/bin/s390x-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/s390x-linux-gnu/libpthread.so;/usr/lib/s390x-linux-gnu/libsz.so;/usr/lib/s390x-linux-gnu/libz.so;/usr/lib/s390x-linux-gnu/libdl.so;/usr/lib/s390x-linux-gnu/libm.so (found version "1.10.4") -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu make[1]: Leaving directory '/<>/kallisto-0.45.1+dfsg' dh_auto_build -a cd obj-s390x-linux-gnu && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.45.1+dfsg -B/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.45.1+dfsg /<>/kallisto-0.45.1+dfsg/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/BUSData.cpp [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/BUSTools.cpp [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/Bootstrap.cpp [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/GeneModel.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/H5Writer.cpp [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/Kmer.cpp [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/<>/kallisto-0.45.1+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/s390x-linux-gnu-ranlib libkallisto_core.a make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.45.1+dfsg /<>/kallisto-0.45.1+dfsg/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/s390x-linux-gnu-g++ -I/usr/include/hdf5/serial -I/<>/kallisto-0.45.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/kallisto-0.45.1+dfsg/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/kallisto-0.45.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto -Wl,-rpath,/usr/lib/s390x-linux-gnu/hdf5/serial: libkallisto_core.a -lpthread -lhts /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lrt make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-s390x-linux-gnu && make -j1 install DESTDIR=/<>/kallisto-0.45.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -S/<>/kallisto-0.45.1+dfsg -B/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.45.1+dfsg /<>/kallisto-0.45.1+dfsg/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' cd /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.45.1+dfsg /<>/kallisto-0.45.1+dfsg/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kallisto-0.45.1+dfsg/debian/tmp/usr/bin/kallisto -- Set runtime path of "/<>/kallisto-0.45.1+dfsg/debian/tmp/usr/bin/kallisto" to "" make[1]: Leaving directory '/<>/kallisto-0.45.1+dfsg/obj-s390x-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against libdl.so.2 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kallisto' in '../kallisto_0.45.1+dfsg-1_s390x.deb'. dpkg-deb: building package 'kallisto-dbgsym' in '../kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kallisto_0.45.1+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-06T20:59:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-DcRJvT/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kallisto-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-DcRJvT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DcRJvT/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-DcRJvT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DcRJvT/apt_archive ./ Sources [773 B] Get:5 copy:/<>/resolver-DcRJvT/apt_archive ./ Packages [845 B] Fetched 2581 B in 0s (141 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 6899 kB of archives. After this operation, 18.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-DcRJvT/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6899 kB in 0s (28.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21069 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libnet-dns-perl (1.20-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up lintian (2.16.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.45.1+dfsg-1_s390x.changes: ------------------------------------- Format: 1.8 Date: Sun, 24 Mar 2019 21:53:40 +0100 Source: kallisto Binary: kallisto kallisto-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 0.45.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kallisto - near-optimal RNA-Seq quantification Closes: 925417 Changes: kallisto (0.45.1+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #925417) Checksums-Sha1: 89d9ba78d8a4e671522b5ea8a490351a4a1603d2 3653412 kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb b65ab941ac88c01a1981fe5ba910fbad650b397e 6003 kallisto_0.45.1+dfsg-1_s390x.buildinfo bf3356b274b8605a2a1a944ffae3ba126d6df60b 209636 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3653412 kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb 0d5a630fd64f7f4d2a556dbce3efd527 209636 kallisto_0.45.1+dfsg-1_s390x.deb Checksums-Sha1: 89d9ba78d8a4e671522b5ea8a490351a4a1603d2 3653412 kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb bf3356b274b8605a2a1a944ffae3ba126d6df60b 209636 kallisto_0.45.1+dfsg-1_s390x.deb Checksums-Sha256: 18ecb1ae37b0bb8575a0d15f540fea6b614a5d88e780816e1ed7c066d1b6a30a 3653412 kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb 03c29405be0b6b83eb1559e24bee237a85c96958c78e5a0c7c6e50fa13c42eb4 209636 kallisto_0.45.1+dfsg-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 06 Aug 2019 20:59:10 +0000 Build-Path: /<>/kallisto-0.45.1+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), cmake (= 3.13.4-1), cmake-data (= 3.13.4-1), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.2.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.4.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12.20190723-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-10), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hdf5-helpers (= 1.10.4+repack-10), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.64-1), libarchive13 (= 3.3.3-4), libasan5 (= 9.1.0-10), libatomic1 (= 9.1.0-10), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190727-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-10), libcom-err2 (= 1.45.3-3), libcroco3 (= 0.6.12-3), libcurl3-gnutls (= 7.65.1-1), libcurl4 (= 7.65.1-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdeflate0 (= 1.2-1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.7-1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.4.0-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-10), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libgfortran5 (= 9.1.0-10), libglib2.0-0 (= 2.60.6-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-3), libgomp1 (= 9.1.0-10), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhdf5-103 (= 1.10.4+repack-10), libhdf5-cpp-103 (= 1.10.4+repack-10), libhdf5-dev (= 1.10.4+repack-10), libhogweed4 (= 3.4.1-1), libhts-dev (= 1.9-11), libhts2 (= 1.9-11), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-1), libisl19 (= 0.20-2), libitm1 (= 9.1.0-10), libjpeg62-turbo (= 1:1.5.2-2+b1), libjpeg62-turbo-dev (= 1:1.5.2-2+b1), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.1.0-10), liblz4-1 (= 1.8.3-1), liblzma-dev (= 5.2.4-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190713-2), libncursesw6 (= 6.1+20190713-2), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.37.0-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libprocps7 (= 2:3.3.15-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.1.0-10), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1c-1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libsz2 (= 1.0.4-1), libtasn1-6 (= 4.14-2), libtinfo6 (= 6.1+20190713-2), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-10), libubsan1 (= 9.1.0-10), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libuv1 (= 1.30.1-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 5.2.6-1), login (= 1:4.7-2), lsb-base (= 10.2019051400), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190713-2), ncurses-bin (= 6.1+20190713-2), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-4), tar (= 1.30+dfsg-6), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1), zlib1g-dev (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1553460820" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto-dbgsym_0.45.1+dfsg-1_s390x.deb --------------------------------------- new Debian package, version 2.0. size 3653412 bytes: control archive=540 bytes. 387 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: kallisto-dbgsym Source: kallisto Version: 0.45.1+dfsg-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 3683 Depends: kallisto (= 0.45.1+dfsg-1) Section: debug Priority: optional Description: debug symbols for kallisto Build-Ids: eafdcf43498b1f288e27c987dd1ee042189447bb drwxr-xr-x root/root 0 2019-03-24 20:53 ./ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/lib/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/lib/debug/.build-id/ea/ -rw-r--r-- root/root 3760504 2019-03-24 20:53 ./usr/lib/debug/.build-id/ea/fdcf43498b1f288e27c987dd1ee042189447bb.debug drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/share/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-03-24 20:53 ./usr/share/doc/kallisto-dbgsym -> kallisto kallisto_0.45.1+dfsg-1_s390x.deb -------------------------------- new Debian package, version 2.0. size 209636 bytes: control archive=1128 bytes. 1327 bytes, 23 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.45.1+dfsg-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 679 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libhdf5-103, libhts2 (>= 1.4.1), libstdc++6 (>= 6), libsz2 (>= 1.0.4), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2019-03-24 20:53 ./ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/bin/ -rwxr-xr-x root/root 681288 2019-03-24 20:53 ./usr/bin/kallisto drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/share/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-03-24 20:53 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2019-03-24 20:53 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 161 2019-03-24 20:53 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 4059 2019-03-24 20:53 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 127972 Build-Time: 79 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 31 Job: kallisto_0.45.1+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: kallisto Package-Time: 122 Source-Version: 0.45.1+dfsg-1 Space: 127972 Status: successful Version: 0.45.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-08-06T20:59:10Z Build needed 00:02:02, 127972k disk space