sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kallisto 0.46.0+dfsg-1 (mips64el) Mon, 12 Aug 2019 03:54:42 +0000 | +==============================================================================+ Package: kallisto Version: 0.46.0+dfsg-1 Source Version: 0.46.0+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-94814a13-99ec-4526-9f81-0f67477ddd6a' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-11-0817.53.pdiff [5105 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-11-1423.46.pdiff [19.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-11-2017.40.pdiff [6625 B] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-12-0218.26.pdiff [15.8 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-12-0218.26.pdiff [15.8 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-11-0817.53.pdiff [4054 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-11-1423.46.pdiff [19.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-11-2017.40.pdiff [10.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-12-0218.26.pdiff [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8089 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-12-0218.26.pdiff [11.3 kB] Fetched 8385 kB in 2s (4332 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kallisto' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kallisto.git Please use: git clone https://salsa.debian.org/med-team/kallisto.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 853 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kallisto 0.46.0+dfsg-1 (dsc) [2108 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kallisto 0.46.0+dfsg-1 (tar) [846 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kallisto 0.46.0+dfsg-1 (diff) [5060 B] Fetched 853 kB in 0s (45.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kallisto-UTtnZB/kallisto-0.46.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/kallisto-UTtnZB' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sINSK7/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-sINSK7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sINSK7/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-sINSK7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sINSK7/apt_archive ./ Sources [364 B] Get:5 copy:/<>/resolver-sINSK7/apt_archive ./ Packages [453 B] Fetched 1774 B in 0s (96.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-8-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-8-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-8-cross-base gcc-8-mips64el-linux-gnuabi64 gcc-8-mips64el-linux-gnuabi64-base gcc-9-cross-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mips64el-linux-gnuabi64 gcc-8-doc libstdc++6-8-dbg-mips64el-cross gcc-8-multilib-mips64el-linux-gnuabi64 libgcc1-dbg-mips64el-cross libgomp1-dbg-mips64el-cross libitm1-dbg-mips64el-cross libatomic1-dbg-mips64el-cross libasan5-dbg-mips64el-cross liblsan0-dbg-mips64el-cross libtsan0-dbg-mips64el-cross libubsan1-dbg-mips64el-cross libmpx2-dbg-mips64el-cross libquadmath0-dbg-mips64el-cross manpages-dev autoconf automake libtool flex bison gdb-mips64el-linux-gnuabi64 gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mips64el-linux-gnuabi64 cpp-8-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el dpkg-cross file g++-8-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-8-cross-base gcc-8-mips64el-linux-gnuabi64 gcc-8-mips64el-linux-gnuabi64-base gcc-9-cross-base gcc-mips64el-linux-gnuabi64 libatomic1-mips64el-cross libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mips64el-cross libgcc1-mips64el-cross libgomp1-mips64el-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mips64el-cross libstdc++6-mips64el-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mips64el-cross sbuild-build-depends-core-dummy:mips64el sensible-utils ucf 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 40.8 MB of archives. After this operation, 152 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sINSK7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [880 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.32.51.20190727-1 [2528 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips64el-linux-gnuabi64-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mips64el-linux-gnuabi64 amd64 8.3.0-19cross1 [6278 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.28-10cross3 [1354 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.1.0-8cross1 [69.2 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.1.0-8cross1 [76.7 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.1.0-8cross1 [7448 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mips64el-cross all 8.3.0-19cross1 [235 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mips64el-linux-gnuabi64 amd64 8.3.0-19cross1 [6698 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [1472 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.1.0-8cross1 [396 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 4.19.37-5cross3 [1266 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.28-10cross3 [2513 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mips64el-cross all 8.3.0-19cross1 [1563 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mips64el-linux-gnuabi64 amd64 8.3.0-19cross1 [6859 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:8.3.0-1 [1192 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.6 [6584 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.8 MB in 1s (62.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11990 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Unpacking crossbuild-essential-mips64el (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mips64el. Preparing to unpack .../42-sbuild-build-depends-core-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libc6-mips64el-cross (2.28-10cross3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.32.51.20190727-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up gcc-8-mips64el-linux-gnuabi64-base:amd64 (8.3.0-19cross1) ... Setting up sensible-utils (0.0.12) ... Setting up linux-libc-dev-mips64el-cross (4.19.37-5cross3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-mips64el-cross (9.1.0-8cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-mips64el-linux-gnuabi64 (8.3.0-19cross1) ... Setting up libatomic1-mips64el-cross (9.1.0-8cross1) ... Setting up libgcc1-mips64el-cross (1:9.1.0-8cross1) ... Setting up libc6-dev-mips64el-cross (2.28-10cross3) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++6-mips64el-cross (9.1.0-8cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up libgcc-8-dev-mips64el-cross (8.3.0-19cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-mips64el-cross (8.3.0-19cross1) ... Setting up gcc-8-mips64el-linux-gnuabi64 (8.3.0-19cross1) ... Setting up g++-8-mips64el-linux-gnuabi64 (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.6) ... Setting up sbuild-build-depends-core-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-sINSK7/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-sINSK7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sINSK7/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-sINSK7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sINSK7/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-sINSK7/apt_archive ./ Packages [571 B] Fetched 2018 B in 0s (116 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mips64el 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sINSK7/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mips64el. (Reading database ... 15168 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mips64el (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), cmake, libhdf5-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-kallisto-dummy' in '/<>/resolver-sINSK7/apt_archive/sbuild-build-depends-kallisto-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kallisto-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-sINSK7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sINSK7/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-sINSK7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sINSK7/apt_archive ./ Sources [652 B] Get:5 copy:/<>/resolver-sINSK7/apt_archive ./ Packages [735 B] Fetched 2350 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install kallisto build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mips64el gcc-9-base:mips64el gettext gettext-base groff-base hdf5-helpers:mips64el intltool-debian libaec-dev:mips64el libaec0:mips64el libarchive-zip-perl libarchive13 libatomic1:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libcurl4 libdb5.3:mips64el libdeflate0:mips64el libelf1 libexpat1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-8-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libgfortran5:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2 libgssapi-krb5-2:mips64el libhdf5-103:mips64el libhdf5-cpp-103:mips64el libhdf5-dev:mips64el libhogweed4:mips64el libhts-dev:mips64el libhts2:mips64el libidn2-0:mips64el libjpeg62-turbo:mips64el libjpeg62-turbo-dev:mips64el libjsoncpp1 libk5crypto3 libk5crypto3:mips64el libkeyutils1 libkeyutils1:mips64el libkrb5-3 libkrb5-3:mips64el libkrb5support0 libkrb5support0:mips64el libldap-2.4-2 libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libnettle6:mips64el libnghttp2-14 libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libprocps7 libpsl5 libpsl5:mips64el librhash0 librtmp1 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsigsegv2 libssh2-1 libssh2-1:mips64el libssl1.1 libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++6:mips64el libsub-override-perl libsz2:mips64el libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el libuv1 linux-libc-dev:mips64el lsb-base m4 man-db po-debconf procps zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mips64el libc-l10n:mips64el locales:mips64el manpages-dev:mips64el rng-tools:mips64el gnutls-bin:mips64el krb5-doc krb5-user krb5-doc:mips64el krb5-user:mips64el libhdf5-doc:mips64el liblzma-doc:mips64el libstdc++-8-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates:mips64el ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n:mips64el krb5-locales krb5-locales:mips64el libgpm2 publicsuffix publicsuffix:mips64el libsasl2-modules libsasl2-modules:mips64el libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mips64el gcc-9-base:mips64el gettext gettext-base groff-base hdf5-helpers:mips64el intltool-debian libaec-dev:mips64el libaec0:mips64el libarchive-zip-perl libarchive13 libatomic1:mips64el libbsd0 libbz2-1.0:mips64el libc6:mips64el libc6-dev:mips64el libcom-err2:mips64el libcroco3 libcurl3-gnutls:mips64el libcurl4 libdb5.3:mips64el libdeflate0:mips64el libelf1 libexpat1 libffi6:mips64el libfile-stripnondeterminism-perl libgcc-8-dev:mips64el libgcc1:mips64el libgcrypt20:mips64el libgfortran5:mips64el libglib2.0-0 libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgpg-error0:mips64el libgssapi-krb5-2 libgssapi-krb5-2:mips64el libhdf5-103:mips64el libhdf5-cpp-103:mips64el libhdf5-dev:mips64el libhogweed4:mips64el libhts-dev:mips64el libhts2:mips64el libidn2-0:mips64el libjpeg62-turbo:mips64el libjpeg62-turbo-dev:mips64el libjsoncpp1 libk5crypto3 libk5crypto3:mips64el libkeyutils1 libkeyutils1:mips64el libkrb5-3 libkrb5-3:mips64el libkrb5support0 libkrb5support0:mips64el libldap-2.4-2 libldap-2.4-2:mips64el libldap-common liblzma-dev:mips64el liblzma5:mips64el libncurses6 libnettle6:mips64el libnghttp2-14 libnghttp2-14:mips64el libp11-kit0:mips64el libpipeline1 libprocps7 libpsl5 libpsl5:mips64el librhash0 librtmp1 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsigsegv2 libssh2-1 libssh2-1:mips64el libssl1.1 libssl1.1:mips64el libstdc++-8-dev:mips64el libstdc++6:mips64el libsub-override-perl libsz2:mips64el libtasn1-6:mips64el libtool libuchardet0 libunistring2:mips64el libuv1 linux-libc-dev:mips64el lsb-base m4 man-db po-debconf procps sbuild-build-depends-kallisto-dummy:mips64el zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 44.4 MB of archives. After this operation, 179 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sINSK7/apt_archive ./ sbuild-build-depends-kallisto-dummy 0.invalid.0 [900 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.3.3-4 [314 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1 [226 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.37.0-1 [83.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.65.3-1 [336 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.7-1 [106 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.30.1-1 [116 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.3 [1029 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-8-base mips64el 8.3.0-19 [192 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main mips64el hdf5-helpers mips64el 1.10.4+repack-10 [35.2 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc1 mips64el 1:9.1.0-10 [69.0 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.28-10 [2562 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main mips64el libaec0 mips64el 1.0.4-1 [20.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main mips64el libsz2 mips64el 1.0.4-1 [6736 B] Get:62 http://debian.oregonstate.edu/debian unstable/main mips64el libaec-dev mips64el 1.0.4-1 [19.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 9.1.0-10 [7488 B] Get:64 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.6-9.2 [46.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.2.7-1 [1224 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.28-10 [2513 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main mips64el libcom-err2 mips64el 1.45.3-4 [70.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main mips64el libgmp10 mips64el 2:6.1.2+dfsg-4 [237 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main mips64el libnettle6 mips64el 3.4.1-1 [227 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main mips64el libhogweed4 mips64el 3.4.1-1 [134 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main mips64el libunistring2 mips64el 0.9.10-2 [376 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main mips64el libidn2-0 mips64el 2.2.0-1 [81.5 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main mips64el libffi6 mips64el 3.2.1-9 [21.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main mips64el libp11-kit0 mips64el 0.23.15-2 [257 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main mips64el libtasn1-6 mips64el 4.14-2 [51.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main mips64el libgnutls30 mips64el 3.6.9-4 [1015 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main mips64el libkeyutils1 mips64el 1.6-6 [14.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5support0 mips64el 1.17-6 [62.6 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main mips64el libk5crypto3 mips64el 1.17-6 [121 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main mips64el libssl1.1 mips64el 1.1.1c-1 [1135 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main mips64el libkrb5-3 mips64el 1.17-6 [333 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main mips64el libgssapi-krb5-2 mips64el 1.17-6 [141 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main mips64el libdb5.3 mips64el 5.3.28+dfsg1-0.6 [597 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-modules-db mips64el 2.1.27+dfsg-1 [68.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libsasl2-2 mips64el 2.1.27+dfsg-1 [102 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libldap-2.4-2 mips64el 2.4.48+dfsg-1 [205 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libnghttp2-14 mips64el 1.37.0-1 [78.8 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libpsl5 mips64el 0.20.2-2 [53.5 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-1+b1 [88.5 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2 [55.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libgpg-error0 mips64el 1.36-7 [68.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libgcrypt20 mips64el 1.8.4-5 [496 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libssh2-1 mips64el 1.8.0-2.1 [134 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libcurl3-gnutls mips64el 7.65.3-1 [311 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libdeflate0 mips64el 1.2-1 [49.6 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 9.1.0-10 [78.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-8-dev mips64el 8.3.0-19 [235 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mips64el libgfortran5 mips64el 9.1.0-10 [307 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-103 mips64el 1.10.4+repack-10 [927 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 9.1.0-10 [436 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-cpp-103 mips64el 1.10.4+repack-10 [115 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-1+b1 [211 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mips64el libjpeg62-turbo mips64el 1:1.5.2-2+b1 [139 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el libjpeg62-turbo-dev mips64el 1:1.5.2-2+b1 [218 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libhdf5-dev mips64el 1.10.4+repack-10 [2595 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma5 mips64el 5.2.4-1 [151 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libhts2 mips64el 1.9-11 [279 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el liblzma-dev mips64el 5.2.4-1 [214 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libhts-dev mips64el 1.9-11 [4351 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-8-dev mips64el 8.3.0-19 [1559 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.4 MB in 1s (39.9 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15168 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... Selecting previously unselected package gcc-9-base:mips64el. Preparing to unpack .../006-gcc-9-base_9.1.0-10_mips64el.deb ... Unpacking gcc-9-base:mips64el (9.1.0-10) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../007-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../008-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../009-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../010-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... 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Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../019-libarchive13_3.3.3-4_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../020-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../021-libkrb5support0_1.17-6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-6) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../022-libk5crypto3_1.17-6_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../023-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../024-libkrb5-3_1.17-6_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../025-libgssapi-krb5-2_1.17-6_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.27+dfsg-1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../028-libldap-common_2.4.48+dfsg-1_all.deb ... Unpacking libldap-common (2.4.48+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../029-libldap-2.4-2_2.4.48+dfsg-1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../030-libnghttp2-14_1.37.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.37.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../031-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../032-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../033-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../034-libcurl4_7.65.3-1_amd64.deb ... Unpacking libcurl4:amd64 (7.65.3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../035-libexpat1_2.2.7-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.7-1) ... Selecting previously unselected package libjsoncpp1:amd64. 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Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../043-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../046-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../047-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libglib2.0-0:amd64. 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Selecting previously unselected package libgmp10:mips64el. Preparing to unpack .../066-libgmp10_2%3a6.1.2+dfsg-4_mips64el.deb ... Unpacking libgmp10:mips64el (2:6.1.2+dfsg-4) ... Selecting previously unselected package libnettle6:mips64el. Preparing to unpack .../067-libnettle6_3.4.1-1_mips64el.deb ... Unpacking libnettle6:mips64el (3.4.1-1) ... Selecting previously unselected package libhogweed4:mips64el. Preparing to unpack .../068-libhogweed4_3.4.1-1_mips64el.deb ... Unpacking libhogweed4:mips64el (3.4.1-1) ... Selecting previously unselected package libunistring2:mips64el. Preparing to unpack .../069-libunistring2_0.9.10-2_mips64el.deb ... Unpacking libunistring2:mips64el (0.9.10-2) ... Selecting previously unselected package libidn2-0:mips64el. Preparing to unpack .../070-libidn2-0_2.2.0-1_mips64el.deb ... Unpacking libidn2-0:mips64el (2.2.0-1) ... Selecting previously unselected package libffi6:mips64el. Preparing to unpack .../071-libffi6_3.2.1-9_mips64el.deb ... Unpacking libffi6:mips64el (3.2.1-9) ... Selecting previously unselected package libp11-kit0:mips64el. Preparing to unpack .../072-libp11-kit0_0.23.15-2_mips64el.deb ... Unpacking libp11-kit0:mips64el (0.23.15-2) ... Selecting previously unselected package libtasn1-6:mips64el. Preparing to unpack .../073-libtasn1-6_4.14-2_mips64el.deb ... Unpacking libtasn1-6:mips64el (4.14-2) ... Selecting previously unselected package libgnutls30:mips64el. Preparing to unpack .../074-libgnutls30_3.6.9-4_mips64el.deb ... Unpacking libgnutls30:mips64el (3.6.9-4) ... Selecting previously unselected package libkeyutils1:mips64el. Preparing to unpack .../075-libkeyutils1_1.6-6_mips64el.deb ... Unpacking libkeyutils1:mips64el (1.6-6) ... Selecting previously unselected package libkrb5support0:mips64el. Preparing to unpack .../076-libkrb5support0_1.17-6_mips64el.deb ... Unpacking libkrb5support0:mips64el (1.17-6) ... Selecting previously unselected package libk5crypto3:mips64el. Preparing to unpack .../077-libk5crypto3_1.17-6_mips64el.deb ... Unpacking libk5crypto3:mips64el (1.17-6) ... Selecting previously unselected package libssl1.1:mips64el. Preparing to unpack .../078-libssl1.1_1.1.1c-1_mips64el.deb ... Unpacking libssl1.1:mips64el (1.1.1c-1) ... Selecting previously unselected package libkrb5-3:mips64el. Preparing to unpack .../079-libkrb5-3_1.17-6_mips64el.deb ... Unpacking libkrb5-3:mips64el (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:mips64el. Preparing to unpack .../080-libgssapi-krb5-2_1.17-6_mips64el.deb ... Unpacking libgssapi-krb5-2:mips64el (1.17-6) ... Selecting previously unselected package libdb5.3:mips64el. Preparing to unpack .../081-libdb5.3_5.3.28+dfsg1-0.6_mips64el.deb ... Unpacking libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Selecting previously unselected package libsasl2-modules-db:mips64el. Preparing to unpack .../082-libsasl2-modules-db_2.1.27+dfsg-1_mips64el.deb ... Unpacking libsasl2-modules-db:mips64el (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:mips64el. Preparing to unpack .../083-libsasl2-2_2.1.27+dfsg-1_mips64el.deb ... Unpacking libsasl2-2:mips64el (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-2.4-2:mips64el. Preparing to unpack .../084-libldap-2.4-2_2.4.48+dfsg-1_mips64el.deb ... Unpacking libldap-2.4-2:mips64el (2.4.48+dfsg-1) ... Selecting previously unselected package libnghttp2-14:mips64el. Preparing to unpack .../085-libnghttp2-14_1.37.0-1_mips64el.deb ... Unpacking libnghttp2-14:mips64el (1.37.0-1) ... Selecting previously unselected package libpsl5:mips64el. Preparing to unpack .../086-libpsl5_0.20.2-2_mips64el.deb ... Unpacking libpsl5:mips64el (0.20.2-2) ... Selecting previously unselected package zlib1g:mips64el. Preparing to unpack .../087-zlib1g_1%3a1.2.11.dfsg-1+b1_mips64el.deb ... Unpacking zlib1g:mips64el (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package librtmp1:mips64el. Preparing to unpack .../088-librtmp1_2.4+20151223.gitfa8646d.1-2_mips64el.deb ... Unpacking librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libgpg-error0:mips64el. Preparing to unpack .../089-libgpg-error0_1.36-7_mips64el.deb ... Unpacking libgpg-error0:mips64el (1.36-7) ... Selecting previously unselected package libgcrypt20:mips64el. Preparing to unpack .../090-libgcrypt20_1.8.4-5_mips64el.deb ... Unpacking libgcrypt20:mips64el (1.8.4-5) ... Selecting previously unselected package libssh2-1:mips64el. Preparing to unpack .../091-libssh2-1_1.8.0-2.1_mips64el.deb ... Unpacking libssh2-1:mips64el (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:mips64el. Preparing to unpack .../092-libcurl3-gnutls_7.65.3-1_mips64el.deb ... Unpacking libcurl3-gnutls:mips64el (7.65.3-1) ... Selecting previously unselected package libdeflate0:mips64el. 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Selecting previously unselected package libhdf5-cpp-103:mips64el. Preparing to unpack .../099-libhdf5-cpp-103_1.10.4+repack-10_mips64el.deb ... Unpacking libhdf5-cpp-103:mips64el (1.10.4+repack-10) ... Selecting previously unselected package zlib1g-dev:mips64el. Preparing to unpack .../100-zlib1g-dev_1%3a1.2.11.dfsg-1+b1_mips64el.deb ... Unpacking zlib1g-dev:mips64el (1:1.2.11.dfsg-1+b1) ... Selecting previously unselected package libjpeg62-turbo:mips64el. Preparing to unpack .../101-libjpeg62-turbo_1%3a1.5.2-2+b1_mips64el.deb ... Unpacking libjpeg62-turbo:mips64el (1:1.5.2-2+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:mips64el. Preparing to unpack .../102-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_mips64el.deb ... Unpacking libjpeg62-turbo-dev:mips64el (1:1.5.2-2+b1) ... Selecting previously unselected package libhdf5-dev:mips64el. Preparing to unpack .../103-libhdf5-dev_1.10.4+repack-10_mips64el.deb ... Unpacking libhdf5-dev:mips64el (1.10.4+repack-10) ... 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Preparing to unpack .../109-sbuild-build-depends-kallisto-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-kallisto-dummy:mips64el (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.7-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up hdf5-helpers:mips64el (1.10.4+repack-10) ... Setting up libarchive13:amd64 (3.3.3-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.37.0-1) ... Setting up linux-libc-dev:mips64el (5.2.7-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.30.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mips64el (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up gcc-9-base:mips64el (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.65.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.13.4-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.28-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up libtasn1-6:mips64el (4.14-2) ... Setting up libc6-dev:mips64el (2.28-10) ... Setting up libbz2-1.0:mips64el (1.0.6-9.2) ... Setting up libdb5.3:mips64el (5.3.28+dfsg1-0.6) ... Setting up libkeyutils1:mips64el (1.6-6) ... Setting up liblzma5:mips64el (5.2.4-1) ... Setting up libgpg-error0:mips64el (1.36-7) ... Setting up libgcc1:mips64el (1:9.1.0-10) ... Setting up libssl1.1:mips64el (1.1.1c-1) ... Setting up libnghttp2-14:mips64el (1.37.0-1) ... Setting up libunistring2:mips64el (0.9.10-2) ... Setting up libdeflate0:mips64el (1.2-1) ... Setting up libgcrypt20:mips64el (1.8.4-5) ... Setting up debhelper (12.3) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libffi6:mips64el (3.2.1-9) ... Setting up libidn2-0:mips64el (2.2.0-1) ... Setting up libcom-err2:mips64el (1.45.3-4) ... Setting up libgomp1:mips64el (9.1.0-10) ... Setting up libaec0:mips64el (1.0.4-1) ... Setting up libkrb5support0:mips64el (1.17-6) ... Setting up libsasl2-modules-db:mips64el (2.1.27+dfsg-1) ... Setting up libjpeg62-turbo:mips64el (1:1.5.2-2+b1) ... Setting up libjpeg62-turbo-dev:mips64el (1:1.5.2-2+b1) ... Setting up libgmp10:mips64el (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:mips64el (0.23.15-2) ... Setting up libatomic1:mips64el (9.1.0-10) ... Setting up libk5crypto3:mips64el (1.17-6) ... Setting up libnettle6:mips64el (3.4.1-1) ... Setting up libgcc-8-dev:mips64el (8.3.0-19) ... Setting up libsasl2-2:mips64el (2.1.27+dfsg-1) ... Setting up libgfortran5:mips64el (9.1.0-10) ... Setting up liblzma-dev:mips64el (5.2.4-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-1+b1) ... Setting up libssh2-1:mips64el (1.8.0-2.1) ... Setting up libkrb5-3:mips64el (1.17-6) ... Setting up libstdc++6:mips64el (9.1.0-10) ... Setting up libsz2:mips64el (1.0.4-1) ... Setting up libstdc++-8-dev:mips64el (8.3.0-19) ... Setting up libpsl5:mips64el (0.20.2-2) ... Setting up libhogweed4:mips64el (3.4.1-1) ... Setting up libaec-dev:mips64el (1.0.4-1) ... Setting up libgnutls30:mips64el (3.6.9-4) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2) ... Setting up libhdf5-103:mips64el (1.10.4+repack-10) ... Setting up libgssapi-krb5-2:mips64el (1.17-6) ... Setting up libhdf5-cpp-103:mips64el (1.10.4+repack-10) ... Setting up libldap-2.4-2:mips64el (2.4.48+dfsg-1) ... Setting up libcurl3-gnutls:mips64el (7.65.3-1) ... Setting up libhdf5-dev:mips64el (1.10.4+repack-10) ... update-alternatives: using /usr/lib/mips64el-linux-gnuabi64/pkgconfig/hdf5-serial.pc to provide /usr/lib/mips64el-linux-gnuabi64/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhts2:mips64el (1.9-11) ... Setting up libhts-dev:mips64el (1.9-11) ... Setting up sbuild-build-depends-kallisto-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-mips64el-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-mips64el-cross_9.1.0-8cross1 linux-libc-dev_5.2.7-1 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-mips64el-linux-gnuabi64_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3+b1 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-mips64el-linux-gnuabi64_8.3.0-19cross1 cpp-mips64el-linux-gnuabi64_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.6 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.4.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-mips64el-linux-gnuabi64_8.3.0-19cross1 g++-mips64el-linux-gnuabi64_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-8-mips64el-linux-gnuabi64_8.3.0-19cross1 gcc-8-mips64el-linux-gnuabi64-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-mips64el-linux-gnuabi64_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hdf5-helpers_1.10.4+repack-10 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_9.1.0-10 libatomic1_9.1.0-10 libatomic1-mips64el-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mips64el-cross_2.28-10cross3 libc6-mips64el-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.65.3-1 libcurl4_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdeflate0_1.2-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.4.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-mips64el-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-mips64el-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libgfortran5_9.1.0-10 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.1.0-10 libgomp1-mips64el-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libquadmath0_9.1.0-10 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-mips64el-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-mips64el-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libsz2_1.0.4-1 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.30.1-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.7-1 linux-libc-dev-mips64el-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-4 lsb-base_10.2019051400 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-kallisto-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6+b1 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Aug 7 11:04:42 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kallisto_0.46.0+dfsg-1.dsc dpkg-source: info: extracting kallisto in /<>/kallisto-0.46.0+dfsg dpkg-source: info: unpacking kallisto_0.46.0+dfsg.orig.tar.xz dpkg-source: info: unpacking kallisto_0.46.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_htslib.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-94814a13-99ec-4526-9f81-0f67477ddd6a SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kallisto dpkg-buildpackage: info: source version 0.46.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/kallisto-0.46.0+dfsg' dh_auto_configure -- -DDEBIAN_BUILD=1 -DLINK=shared cd obj-mips64el-linux-gnuabi64 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mips64 -DCMAKE_C_COMPILER=mips64el-linux-gnuabi64-gcc -DCMAKE_CXX_COMPILER=mips64el-linux-gnuabi64-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-qmake -DCMAKE_INSTALL_LIBDIR=lib/mips64el-linux-gnuabi64 -DDEBIAN_BUILD=1 -DLINK=shared .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/mips64el-linux-gnuabi64-gcc -- Check for working C compiler: /usr/bin/mips64el-linux-gnuabi64-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done shared build -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so;/usr/lib/mips64el-linux-gnuabi64/libpthread.so;/usr/lib/mips64el-linux-gnuabi64/libsz.so;/usr/lib/mips64el-linux-gnuabi64/libz.so;/usr/lib/mips64el-linux-gnuabi64/libdl.so;/usr/lib/mips64el-linux-gnuabi64/libm.so (found version "1.10.4") -- Found ZLIB: /usr/lib/mips64el-linux-gnuabi64/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 make[1]: Leaving directory '/<>/kallisto-0.46.0+dfsg' dh_auto_build -a cd obj-mips64el-linux-gnuabi64 && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<>/kallisto-0.46.0+dfsg -B/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.0+dfsg /<>/kallisto-0.46.0+dfsg/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= Scanning dependencies of target kallisto_core make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [ 4%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSData.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSData.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/BUSData.cpp [ 9%] Building CXX object src/CMakeFiles/kallisto_core.dir/BUSTools.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/BUSTools.cpp [ 14%] Building CXX object src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/Bootstrap.cpp [ 19%] Building CXX object src/CMakeFiles/kallisto_core.dir/GeneModel.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/GeneModel.cpp [ 23%] Building CXX object src/CMakeFiles/kallisto_core.dir/H5Writer.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/H5Writer.cpp [ 28%] Building CXX object src/CMakeFiles/kallisto_core.dir/Kmer.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Kmer.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/Kmer.cpp [ 33%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/KmerIndex.cpp [ 38%] Building CXX object src/CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/KmerIterator.cpp [ 42%] Building CXX object src/CMakeFiles/kallisto_core.dir/Merge.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/Merge.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/Merge.cpp [ 47%] Building CXX object src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/MinCollector.cpp [ 52%] Building CXX object src/CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/PlaintextWriter.cpp [ 57%] Building CXX object src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/ProcessReads.cpp [ 61%] Building CXX object src/CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/PseudoBam.cpp [ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/common.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/common.cpp [ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/h5utils.cpp [ 76%] Building CXX object src/CMakeFiles/kallisto_core.dir/hash.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/hash.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/hash.cpp [ 80%] Building CXX object src/CMakeFiles/kallisto_core.dir/main.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/main.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/main.cpp [ 85%] Building CXX object src/CMakeFiles/kallisto_core.dir/weights.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/<>/kallisto-0.46.0+dfsg/src -I/usr/include/hdf5/serial -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto_core.dir/weights.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/weights.cpp [ 90%] Linking CXX static library libkallisto_core.a cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -P CMakeFiles/kallisto_core.dir/cmake_clean_target.cmake cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto_core.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-ar qc libkallisto_core.a CMakeFiles/kallisto_core.dir/BUSData.cpp.o CMakeFiles/kallisto_core.dir/BUSTools.cpp.o CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o CMakeFiles/kallisto_core.dir/GeneModel.cpp.o CMakeFiles/kallisto_core.dir/H5Writer.cpp.o CMakeFiles/kallisto_core.dir/Kmer.cpp.o CMakeFiles/kallisto_core.dir/KmerIndex.cpp.o CMakeFiles/kallisto_core.dir/KmerIterator.cpp.o CMakeFiles/kallisto_core.dir/Merge.cpp.o CMakeFiles/kallisto_core.dir/MinCollector.cpp.o CMakeFiles/kallisto_core.dir/PlaintextWriter.cpp.o CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o CMakeFiles/kallisto_core.dir/PseudoBam.cpp.o CMakeFiles/kallisto_core.dir/common.cpp.o CMakeFiles/kallisto_core.dir/h5utils.cpp.o CMakeFiles/kallisto_core.dir/hash.cpp.o CMakeFiles/kallisto_core.dir/main.cpp.o CMakeFiles/kallisto_core.dir/weights.cpp.o /usr/bin/mips64el-linux-gnuabi64-ranlib libkallisto_core.a make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.0+dfsg /<>/kallisto-0.46.0+dfsg/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= Scanning dependencies of target kallisto make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [ 95%] Building CXX object src/CMakeFiles/kallisto.dir/main.cpp.o cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/mips64el-linux-gnuabi64-g++ -I/usr/include/hdf5/serial -I/<>/kallisto-0.46.0+dfsg/src -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -o CMakeFiles/kallisto.dir/main.cpp.o -c /<>/kallisto-0.46.0+dfsg/src/main.cpp [100%] Linking CXX executable kallisto cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kallisto.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>/kallisto-0.46.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/kallisto.dir/main.cpp.o -o kallisto -Wl,-rpath,/usr/lib/mips64el-linux-gnuabi64/hdf5/serial: libkallisto_core.a -lpthread -lhts /usr/lib/mips64el-linux-gnuabi64/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lrt make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles 0 make[1]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-mips64el-linux-gnuabi64 && make -j1 install DESTDIR=/<>/kallisto-0.46.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<>/kallisto-0.46.0+dfsg -B/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.0+dfsg /<>/kallisto-0.46.0+dfsg/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src/CMakeFiles/kallisto_core.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto_core.dir/build.make src/CMakeFiles/kallisto_core.dir/build make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto_core.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [ 90%] Built target kallisto_core make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/depend make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' cd /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/kallisto-0.46.0+dfsg /<>/kallisto-0.46.0+dfsg/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64 /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/src/CMakeFiles/kallisto.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make -f src/CMakeFiles/kallisto.dir/build.make src/CMakeFiles/kallisto.dir/build make[3]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make[3]: Nothing to be done for 'src/CMakeFiles/kallisto.dir/build'. make[3]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' [100%] Built target kallisto make[2]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -E cmake_progress_start /<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/kallisto-0.46.0+dfsg/debian/tmp/usr/bin/kallisto -- Set runtime path of "/<>/kallisto-0.46.0+dfsg/debian/tmp/usr/bin/kallisto" to "" make[1]: Leaving directory '/<>/kallisto-0.46.0+dfsg/obj-mips64el-linux-gnuabi64' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against librt.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/kallisto/usr/bin/kallisto was not linked against libdl.so.2 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kallisto' in '../kallisto_0.46.0+dfsg-1_mips64el.deb'. dpkg-deb: building package 'kallisto-dbgsym' in '../kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kallisto_0.46.0+dfsg-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-12T03:56:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-sINSK7/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kallisto-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-sINSK7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sINSK7/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-sINSK7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sINSK7/apt_archive ./ Sources [770 B] Get:5 copy:/<>/resolver-sINSK7/apt_archive ./ Packages [849 B] Fetched 2582 B in 0s (135 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 7000 kB of archives. After this operation, 19.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sINSK7/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.17.0 [1273 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7000 kB in 0s (26.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21116 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up lintian (2.17.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kallisto_0.46.0+dfsg-1_mips64el.changes: ---------------------------------------- Format: 1.8 Date: Wed, 07 Aug 2019 13:01:05 +0200 Source: kallisto Binary: kallisto kallisto-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 0.46.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kallisto - near-optimal RNA-Seq quantification Changes: kallisto (0.46.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 Checksums-Sha1: 670179e5782c172cc2cf70959c861aba6b021858 3709532 kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb fcf0e521eb8505fe4ff169c103637df929fdf11f 6035 kallisto_0.46.0+dfsg-1_mips64el.buildinfo f1d1f9b2fbc2dd7d0717c71ef85a8df00fa7feda 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133c2aa815d7b52faedf4bd6ffb7e6de 3709532 kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb 96e76c0bf3b3d01c07da08a0fed85f41 211276 kallisto_0.46.0+dfsg-1_mips64el.deb Checksums-Sha1: 670179e5782c172cc2cf70959c861aba6b021858 3709532 kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb f1d1f9b2fbc2dd7d0717c71ef85a8df00fa7feda 211276 kallisto_0.46.0+dfsg-1_mips64el.deb Checksums-Sha256: 6b422d9a17cd2899c197da7900af57adf08fe1e048accc723ab41764f8d0eb4e 3709532 kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb 3295d1b956500260d7c98897eaa44a18da767935a71e5b9e66a127d65b5454a7 211276 kallisto_0.46.0+dfsg-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 12 Aug 2019 03:56:53 +0000 Build-Path: /<>/kallisto-0.46.0+dfsg Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), cmake (= 3.13.4-1), cmake-data (= 3.13.4-1), coreutils (= 8.30-3+b1), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.4.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-10), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hdf5-helpers (= 1.10.4+repack-10), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.64-1), libarchive13 (= 3.3.3-4), libasan5 (= 9.1.0-10), libatomic1 (= 9.1.0-10), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190727-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-10), libcom-err2 (= 1.45.3-4), libcroco3 (= 0.6.12-3), libcurl3-gnutls (= 7.65.3-1), libcurl4 (= 7.65.3-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdeflate0 (= 1.2-1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.7-1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.4.0-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-10), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libgfortran5 (= 9.1.0-10), libglib2.0-0 (= 2.60.6-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.9-4), libgomp1 (= 9.1.0-10), libgpg-error0 (= 1.36-7), libgssapi-krb5-2 (= 1.17-6), libhdf5-103 (= 1.10.4+repack-10), libhdf5-cpp-103 (= 1.10.4+repack-10), libhdf5-dev (= 1.10.4+repack-10), libhogweed4 (= 3.4.1-1), libhts-dev (= 1.9-11), libhts2 (= 1.9-11), libicu63 (= 63.2-2), libidn2-0 (= 2.2.0-1), libisl19 (= 0.20-2), libitm1 (= 9.1.0-10), libjpeg62-turbo (= 1:1.5.2-2+b1), libjpeg62-turbo-dev (= 1:1.5.2-2+b1), libjsoncpp1 (= 1.7.4-3), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6-6), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.48+dfsg-1), libldap-common (= 2.4.48+dfsg-1), liblsan0 (= 9.1.0-10), liblz4-1 (= 1.8.3-1), liblzma-dev (= 5.2.4-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libnettle6 (= 3.4.1-1), libnghttp2-14 (= 1.37.0-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libprocps7 (= 2:3.3.15-2), libpsl5 (= 0.20.2-2), libquadmath0 (= 9.1.0-10), librhash0 (= 1.3.8-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2), libsasl2-2 (= 2.1.27+dfsg-1), libsasl2-modules-db (= 2.1.27+dfsg-1), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1c-1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libsz2 (= 1.0.4-1), libtasn1-6 (= 4.14-2), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-10), libubsan1 (= 9.1.0-10), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libuv1 (= 1.30.1-1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 5.2.7-1), login (= 1:4.7-2), lsb-base (= 10.2019051400), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), procps (= 2:3.3.15-2), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-4), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1565175665" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kallisto-dbgsym_0.46.0+dfsg-1_mips64el.deb ------------------------------------------ new Debian package, version 2.0. size 3709532 bytes: control archive=544 bytes. 390 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: kallisto-dbgsym Source: kallisto Version: 0.46.0+dfsg-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 3769 Depends: kallisto (= 0.46.0+dfsg-1) Section: debug Priority: optional Description: debug symbols for kallisto Build-Ids: cd98ed848b5bb4283b51b77ee335d7ee16386fa6 drwxr-xr-x root/root 0 2019-08-07 11:01 ./ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/lib/debug/.build-id/cd/ -rw-r--r-- root/root 3849152 2019-08-07 11:01 ./usr/lib/debug/.build-id/cd/98ed848b5bb4283b51b77ee335d7ee16386fa6.debug drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/share/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-08-07 11:01 ./usr/share/doc/kallisto-dbgsym -> kallisto kallisto_0.46.0+dfsg-1_mips64el.deb ----------------------------------- new Debian package, version 2.0. size 211276 bytes: control archive=1132 bytes. 1330 bytes, 23 lines control 264 bytes, 4 lines md5sums Package: kallisto Version: 0.46.0+dfsg-1 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 753 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libhdf5-103, libhts2 (>= 1.4.1), libstdc++6 (>= 6), libsz2 (>= 1.0.4), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://pachterlab.github.io/kallisto Description: near-optimal RNA-Seq quantification Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. drwxr-xr-x root/root 0 2019-08-07 11:01 ./ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/bin/ -rwxr-xr-x root/root 757184 2019-08-07 11:01 ./usr/bin/kallisto drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/share/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-07 11:01 ./usr/share/doc/kallisto/ -rw-r--r-- root/root 323 2019-08-07 11:01 ./usr/share/doc/kallisto/README.test -rw-r--r-- root/root 243 2019-08-07 11:01 ./usr/share/doc/kallisto/changelog.Debian.gz -rw-r--r-- root/root 4059 2019-08-07 11:01 ./usr/share/doc/kallisto/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 133876 Build-Time: 90 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 30 Job: kallisto_0.46.0+dfsg-1 Lintian: pass Machine Architecture: amd64 Package: kallisto Package-Time: 131 Source-Version: 0.46.0+dfsg-1 Space: 133876 Status: successful Version: 0.46.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2019-08-12T03:56:53Z Build needed 00:02:11, 133876k disk space