sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kma 1.2.10a-1 (armhf) Sat, 03 Aug 2019 10:41:28 +0000 | +==============================================================================+ Package: kma Version: 1.2.10a-1 Source Version: 1.2.10a-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-b6b65ac4-c6a0-45f4-b191-ef35a0c3c7a9' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-03-0814.30.pdiff [6926 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-03-0814.30.pdiff [9379 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-03-0814.30.pdiff [6926 B] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8138 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-03-0814.30.pdiff [9379 B] Fetched 8359 kB in 2s (4350 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgnutls30 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1168 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libgnutls30 amd64 3.6.9-3 [1168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1168 kB in 0s (36.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.9-3_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.9-3) over (3.6.9-2) ... Setting up libgnutls30:amd64 (3.6.9-3) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kma' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kam.git Please use: git clone https://salsa.debian.org/med-team/kam.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 725 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kma 1.2.10a-1 (dsc) [1921 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kma 1.2.10a-1 (tar) [718 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kma 1.2.10a-1 (diff) [4840 B] Fetched 725 kB in 1s (693 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kma-ZjBZoS/kma-1.2.10a' with '<>' I: NOTICE: Log filtering will replace 'build/kma-ZjBZoS' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HB5c3b/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-HB5c3b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HB5c3b/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-HB5c3b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HB5c3b/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-HB5c3b/apt_archive ./ Packages [450 B] Fetched 1770 B in 0s (115 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HB5c3b/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.32.51.20190727-1 [2914 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6549 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-10cross3 [1172 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.1.0-8cross1 [37.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.1.0-8cross1 [73.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.1.0-8cross1 [6692 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.1.0-8cross1 [363 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.1.0-8cross1 [392 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.1.0-8cross1 [112 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-19cross1 [614 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6979 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-10cross3 [2150 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-19cross1 [1561 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [7130 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (57.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armhf. Preparing to unpack .../43-crossbuild-essential-armhf_12.6_all.deb ... Unpacking crossbuild-essential-armhf (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armhf. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.28-10cross3) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-19cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.37-5cross3) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.32.51.20190727-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libgomp1-armhf-cross (9.1.0-8cross1) ... Setting up libc6-dev-armhf-cross (2.28-10cross3) ... Setting up libatomic1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc1-armhf-cross (1:9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.1.0-8cross1) ... Setting up libstdc++6-armhf-cross (9.1.0-8cross1) ... Setting up libubsan1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up gcc-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up g++-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.6) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-HB5c3b/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-HB5c3b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HB5c3b/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HB5c3b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HB5c3b/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-HB5c3b/apt_archive ./ Packages [569 B] Fetched 2017 B in 0s (110 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HB5c3b/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12), zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-kma-dummy' in '/<>/resolver-HB5c3b/apt_archive/sbuild-build-depends-kma-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kma-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-HB5c3b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HB5c3b/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HB5c3b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HB5c3b/apt_archive ./ Sources [643 B] Get:5 copy:/<>/resolver-HB5c3b/apt_archive ./ Packages [721 B] Fetched 2327 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install kma build dependencies (apt-based resolver) --------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db po-debconf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db po-debconf sbuild-build-depends-kma-dummy:armhf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 80.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HB5c3b/apt_archive ./ sbuild-build-depends-kma-dummy 0.invalid.0 [884 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.4.0-1 [21.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.4.0-1 [14.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-2 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.1.0-10 [37.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-10 [2390 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.1.0-10 [370 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.1.0-10 [6880 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.37-6 [1168 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-10 [2149 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.1.0-10 [75.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.1.0-10 [431 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.1.0-10 [113 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-19 [612 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-19 [1561 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g armhf 1:1.2.11.dfsg-1 [87.9 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 0s (52.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../06-gcc-9-base_9.1.0-10_armhf.deb ... Unpacking gcc-9-base:armhf (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.4.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.4.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.4.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.4.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190713-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:armhf. Preparing to unpack .../29-gcc-8-base_8.3.0-19_armhf.deb ... Unpacking gcc-8-base:armhf (8.3.0-19) ... Selecting previously unselected package libgcc1:armhf. Preparing to unpack .../30-libgcc1_1%3a9.1.0-10_armhf.deb ... Unpacking libgcc1:armhf (1:9.1.0-10) ... Selecting previously unselected package libc6:armhf. Preparing to unpack .../31-libc6_2.28-10_armhf.deb ... Unpacking libc6:armhf (2.28-10) ... Selecting previously unselected package libasan5:armhf. Preparing to unpack .../32-libasan5_9.1.0-10_armhf.deb ... Unpacking libasan5:armhf (9.1.0-10) ... Selecting previously unselected package libatomic1:armhf. Preparing to unpack .../33-libatomic1_9.1.0-10_armhf.deb ... Unpacking libatomic1:armhf (9.1.0-10) ... Selecting previously unselected package linux-libc-dev:armhf. Preparing to unpack .../34-linux-libc-dev_4.19.37-6_armhf.deb ... Unpacking linux-libc-dev:armhf (4.19.37-6) ... Selecting previously unselected package libc6-dev:armhf. Preparing to unpack .../35-libc6-dev_2.28-10_armhf.deb ... Unpacking libc6-dev:armhf (2.28-10) ... Selecting previously unselected package libgomp1:armhf. Preparing to unpack .../36-libgomp1_9.1.0-10_armhf.deb ... Unpacking libgomp1:armhf (9.1.0-10) ... Selecting previously unselected package libstdc++6:armhf. Preparing to unpack .../37-libstdc++6_9.1.0-10_armhf.deb ... Unpacking libstdc++6:armhf (9.1.0-10) ... Selecting previously unselected package libubsan1:armhf. Preparing to unpack .../38-libubsan1_9.1.0-10_armhf.deb ... Unpacking libubsan1:armhf (9.1.0-10) ... Selecting previously unselected package libgcc-8-dev:armhf. Preparing to unpack .../39-libgcc-8-dev_8.3.0-19_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.3.0-19) ... Selecting previously unselected package libstdc++-8-dev:armhf. Preparing to unpack .../40-libstdc++-8-dev_8.3.0-19_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.3.0-19) ... Selecting previously unselected package zlib1g:armhf. Preparing to unpack .../41-zlib1g_1%3a1.2.11.dfsg-1_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.11.dfsg-1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../42-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Selecting previously unselected package sbuild-build-depends-kma-dummy:armhf. Preparing to unpack .../43-sbuild-build-depends-kma-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-kma-dummy:armhf (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armhf (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armhf (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:armhf (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.4.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armhf (2.28-10) ... Setting up libc6-dev:armhf (2.28-10) ... Setting up libgcc1:armhf (1:9.1.0-10) ... Setting up zlib1g:armhf (1:1.2.11.dfsg-1) ... Setting up libgomp1:armhf (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armhf (9.1.0-10) ... Setting up libatomic1:armhf (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.4.0-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up libstdc++6:armhf (9.1.0-10) ... Setting up debhelper (12.2.3) ... Setting up libubsan1:armhf (9.1.0-10) ... Setting up libgcc-8-dev:armhf (8.3.0-19) ... Setting up libstdc++-8-dev:armhf (8.3.0-19) ... Setting up sbuild-build-depends-kma-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-arm-linux-gnueabihf_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 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libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-2 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-armhf-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-armhf-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-2 ncurses-bin_6.1+20190713-2 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-kma-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-4 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 1 12:08:09 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kma_1.2.10a-1.dsc dpkg-source: info: extracting kma in /<> dpkg-source: info: unpacking kma_1.2.10a.orig.tar.bz2 dpkg-source: info: unpacking kma_1.2.10a-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-b6b65ac4-c6a0-45f4-b191-ef35a0c3c7a9 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package kma dpkg-buildpackage: info: source version 1.2.10a-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o decon.o ef.o filebuff.o frags.o hashmap.o hashmapindex.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmers.o kmmap.o loadupdate.o makeindex.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o kma kma_index kma_shm kma_update libkma.a make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>' arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c In file included from align.c:28: align.c: In function 'KMA': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:90:55: note: in expansion of macro 'getNuc' for(j = i - 1; 0 <= j && 0 <= prev && qseq[j] == getNuc(template_index->seq, prev); --j) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:103:51: note: in expansion of macro 'getNuc' while(i < end && value < t_len && qseq[i] == getNuc(template_index->seq, value)) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:143:56: note: in expansion of macro 'getNuc' for(j = k - 1; 0 <= j && 0 <= prev && qseq[j] == getNuc(template_index->seq, prev); --j) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:156:52: note: in expansion of macro 'getNuc' while(k < end && value < t_len && qseq[k] == getNuc(template_index->seq, value)) { ^~~~~~ align.c: In function 'KMA_score': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:452:54: note: in expansion of macro 'getNuc' for(k = j - 1; 0 <= k && 0 <= prev && qseq[k] == getNuc(template_index->seq, prev); --k) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:467:50: note: in expansion of macro 'getNuc' while(j < end && value < t_len && qseq[j] == getNuc(template_index->seq, value)) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:498:55: note: in expansion of macro 'getNuc' for(k = l - 1; 0 <= k && 0 <= prev && qseq[k] == getNuc(template_index->seq, prev); --k) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:512:51: note: in expansion of macro 'getNuc' while(l < end && value < t_len && qseq[l] == getNuc(template_index->seq, value)) { ^~~~~~ align.c: In function 'anker_rc': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:780:55: note: in expansion of macro 'getNuc' for(j = i - 1; 0 <= j && 0 <= prev && qseq[j] == getNuc(template_index->seq, prev); --j) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:795:51: note: in expansion of macro 'getNuc' while(i < end && value < t_len && qseq[i] == getNuc(template_index->seq, value)) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:838:56: note: in expansion of macro 'getNuc' for(j = k - 1; 0 <= j && 0 <= prev && qseq[j] == getNuc(template_index->seq, prev); --j) { ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ align.c:851:52: note: in expansion of macro 'getNuc' while(k < end && value < t_len && qseq[k] == getNuc(template_index->seq, value)) { ^~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alnfrags.o alnfrags.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ankers.o ankers.c ankers.c: In function 'get_ankers': ankers.c:202:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, sizeof(long unsigned), qseq->complen, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:203:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->N + 1, sizeof(int), qseq->N[0], inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:204:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(out_Tem + 1, sizeof(int), *out_Tem, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:205:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o assembly.o assembly.c In file included from assembly.c:36: assembly.c: In function 'updateMatrix': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ assembly.c:122:72: note: in expansion of macro 'getNuc' check = sprintf(update, "%c\t%hu\t%hu\t%hu\t%hu\t%hu\t%hu\n", bases[getNuc(template_seq, i)], assembly[pos].counts[0], assembly[pos].counts[1], assembly[pos].counts[2], assembly[pos].counts[3], assembly[pos].counts[4], assembly[pos].counts[5]); ^~~~~~ assembly.c: In function 'assemble_KMA_threaded': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ assembly.c:646:32: note: in expansion of macro 'getNuc' aligned_assem->t[i] = bases[getNuc(template_index->seq, pos)]; ^~~~~~ assembly.c: In function 'assemble_KMA_dense_threaded': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ assembly.c:820:26: note: in expansion of macro 'getNuc' aligned_assem->t[i] = getNuc(template_index->seq, i); ^~~~~~ assembly.c: In function 'assemble_KMA_threaded': assembly.c:388:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, sizeof(int), 8, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:415:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:416:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c: In function 'assemble_KMA_dense_threaded': assembly.c:861:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, sizeof(int), 8, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:888:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:889:6: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c: In function 'skip_assemble_KMA': assembly.c:1136:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, sizeof(int), 8, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1156:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1157:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chain.o chain.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compdna.o compdna.c In file included from compdna.c:25: compdna.c: In function 'unCompDNA': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ compdna.c:154:12: note: in expansion of macro 'getNuc' *--seq = getNuc(compressor->seq, i); ^~~~~~ compdna.c: In function 'binRev': compdna.c:192:15: warning: right shift count >= width of type [-Wshift-count-overflow] return ((mer >> 32) | (mer << 32)); ^~ compdna.c:192:29: warning: left shift count >= width of type [-Wshift-count-overflow] return ((mer >> 32) | (mer << 32)); ^~ compdna.c: In function 'getComp': compdna.c:289:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&compressor->seqlen, sizeof(int), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compkmers.o compkmers.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compress.o compress.c compress.c: In function 'compressKMA_DB': compress.c:101:8: warning: right shift count >= width of type [-Wshift-count-overflow] check >>= 32; ^~~ compress.c: In function 'compressKMA_deconDB': compress.c:886:9: warning: right shift count >= width of type [-Wshift-count-overflow] check >>= 32; ^~~ compress.c: In function 'compressKMA_deconMegaDB': compress.c:989:9: warning: right shift count >= width of type [-Wshift-count-overflow] check >>= 32; ^~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o decon.o decon.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ef.o ef.c In file included from ef.c:25: ef.c: In function 'getExtendedFeatures': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ ef.c:82:51: note: in expansion of macro 'getNuc' snpSum += (depthUpdate - assembly[pos].counts[getNuc(template_seq, pos)]); ^~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filebuff.o filebuff.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frags.o frags.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmap.o hashmap.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapindex.o hashmapindex.c hashmapindex.c: In function 'hashMap_index_load': hashmapindex.c:253:2: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(seq, src->seq, ((src->len >> 5) + 1) * sizeof(long unsigned)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashmapindex.c:254:2: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index, src->index, src->size * sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashmapindex.c: In function 'hashMap_index_build': hashmapindex.c:274:2: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(seq, src->seq, ((src->len >> 5) + 1) * sizeof(long unsigned)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashmapindex.c: In function 'alignLoad_shm_initial': hashmapindex.c:350:2: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index_in, &kmersize, sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkma.o hashmapkma.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkmers.o hashmapkmers.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o index.o index.c index.c: In function 'index_main': index.c:343:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(inputfiles[filecount - 1], 1, size - 1, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:396:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(deconfiles[deconcount - 1], 1, size - 1, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kma.o kma.c kma.c: In function 'kma_main': kma.c:1093:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&qseq.len, sizeof(int), 1, templatefile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kma.c:1088:34: warning: argument 1 null where non-null expected [-Wnonnull] myTemplatefilename = smalloc(strlen(templatefilename) + 64); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kma.c:22: /usr/arm-linux-gnueabihf/include/string.h:384:15: note: in a call to function 'strlen' declared here extern size_t strlen (const char *__s) ^~~~~~ kma.c:1132:32: warning: argument 1 null where non-null expected [-Wnonnull] myTemplatefilename = smalloc(strlen(templatefilename) + 64); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kma.c:22: /usr/arm-linux-gnueabihf/include/string.h:384:15: note: in a call to function 'strlen' declared here extern size_t strlen (const char *__s) ^~~~~~ kma.c:1138:32: warning: argument 1 null where non-null expected [-Wnonnull] myTemplatefilename = smalloc(strlen(templatefilename) + 64); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kma.c:22: /usr/arm-linux-gnueabihf/include/string.h:384:15: note: in a call to function 'strlen' declared here extern size_t strlen (const char *__s) ^~~~~~ kma.c:1150:32: warning: argument 1 null where non-null expected [-Wnonnull] myTemplatefilename = smalloc(strlen(templatefilename) + 64); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kma.c:22: /usr/arm-linux-gnueabihf/include/string.h:384:15: note: in a call to function 'strlen' declared here extern size_t strlen (const char *__s) ^~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmapipe.o kmapipe.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmers.o kmers.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmmap.o kmmap.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadupdate.o loadupdate.c loadupdate.c: In function 'load_DBs': loadupdate.c:178:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&DB_size, sizeof(unsigned), 1, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:183:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_lengths, sizeof(unsigned), DB_size, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:184:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_slengths, sizeof(unsigned), DB_size, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:185:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_ulengths, sizeof(unsigned), DB_size, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:193:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_lengths, sizeof(unsigned), DB_size, infile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeindex.o makeindex.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mt1.o mt1.c mt1.c: In function 'runKMA_Mt1': mt1.c:166:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&DB_size, sizeof(int), 1, DB_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nw.o nw.c In file included from nw.c:24: nw.c: In function 'NW': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:73:21: note: in expansion of macro 'getNuc' aligned->t[m] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:161:11: note: in expansion of macro 'getNuc' t_nuc = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:258:27: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:266:28: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:273:27: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ nw.c: In function 'NW_band': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:349:21: note: in expansion of macro 'getNuc' aligned->t[m] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:451:11: note: in expansion of macro 'getNuc' t_nuc = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:580:27: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:588:28: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:596:27: note: in expansion of macro 'getNuc' aligned->t[Stat.len] = getNuc(template, nuc_pos); ^~~~~~ nw.c: In function 'NW_score': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:743:11: note: in expansion of macro 'getNuc' t_nuc = getNuc(template, nuc_pos); ^~~~~~ nw.c: In function 'NW_band_score': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ nw.c:997:11: note: in expansion of macro 'getNuc' t_nuc = getNuc(template, nuc_pos); ^~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o printconsensus.o printconsensus.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qualcheck.o qualcheck.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runinput.o runinput.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runkma.o runkma.c runkma.c: In function 'runKMA': runkma.c:216:3: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index_in_no, &kmersize, sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:572:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:573:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:574:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:575:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:576:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:671:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:675:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:676:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:720:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:773:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:816:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:840:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:856:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:857:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:858:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:859:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:860:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1006:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1010:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1011:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c: In function 'runKMA_MEM': runkma.c:1344:3: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index_in_no, &kmersize, sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1589:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1590:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1591:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1592:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1593:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1688:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1692:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1693:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1737:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1790:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1833:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1857:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1873:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1874:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1875:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1876:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1877:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2023:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2027:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2028:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o savekmers.o savekmers.c savekmers.c: In function 'loadFsa': savekmers.c:81:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, sizeof(long unsigned), qseq->complen, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ savekmers.c:82:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->N + 1, sizeof(int), qseq->N[0], inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ savekmers.c:83:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq2fasta.o seq2fasta.c In file included from seq2fasta.c:28: seq2fasta.c: In function 'printFastas': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ seq2fasta.c:89:19: note: in expansion of macro 'getNuc' *--seq = bases[getNuc(compseq, j)]; ^~~~~~ seq2fasta.c: In function 'printFastaList': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ seq2fasta.c:151:20: note: in expansion of macro 'getNuc' *--seq = bases[getNuc(compseq, j)]; ^~~~~~ seq2fasta.c: In function 'printFastas': seq2fasta.c:84:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(compseq, sizeof(long unsigned), (template_lengths[i] >> 5) + 1, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seq2fasta.c: In function 'printFastaList': seq2fasta.c:146:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(compseq, sizeof(long unsigned), (template_lengths[i] >> 5) + 1, seqfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqparse.o seqparse.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o shm.o shm.c shm.c: In function 'hashMapKMA_setupSHM': shm.c:95:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(dest->exist, 1, size, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:115:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(dest->values, 1, size, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:138:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(dest->key_index, 1, size, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:158:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(dest->value_index, 1, size, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function 'length_setupSHM': shm.c:263:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(template_lengths, sizeof(unsigned), size / sizeof(unsigned), file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function 'index_setupSHM': shm.c:305:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(index, sizeof(int), size / sizeof(int), file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function 'seq_setupSHM': shm.c:346:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(seq, sizeof(long unsigned), size / sizeof(long unsigned), file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function 'name_setupSHM': shm.c:388:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(template_names, 1, size, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sparse.o sparse.c sparse.c: In function 'load_DBs_Sparse': sparse.c:156:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_lengths, sizeof(int), DB_size, DB_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sparse.c:157:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(*template_ulengths, sizeof(int), DB_size, DB_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sparse.c:197:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(template_names[0], 1, file_size, DB_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o spltdb.o spltdb.c spltdb.c: In function 'runKMA_spltDB': spltdb.c:460:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(template_lengths + dbBiases[i], sizeof(int), bias, inputfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:849:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:850:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:851:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:852:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:853:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:948:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:952:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:953:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:997:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1050:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1093:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1117:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 2, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1133:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1134:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1135:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1136:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1137:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1281:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(stats, sizeof(int), 3, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1285:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(qseq->seq, 1, qseq->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1286:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(header->seq, 1, header->len, frag_in_raw); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1525:3: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index_in_no, &kmersize, sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1569:5: warning: ignoring return value of 'read', declared with attribute warn_unused_result [-Wunused-result] read(index_in_no, &kmersize, sizeof(int)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdnuc.o stdnuc.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdstat.o stdstat.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp.o tmp.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update.o update.c update.c: In function 'convertLength_014to015': update.c:40:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&size, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c: In function 'hashMapKMA_014to015': update.c:88:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&DB_size, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:89:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&dest->kmersize, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:90:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&dest->prefix_len, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:91:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&dest->prefix, sizeof(long unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:92:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&dest->size, sizeof(long unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:100:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&tmp, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:102:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&seqsize, sizeof(unsigned), 1, file); //seq size ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:103:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&tmp, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:105:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&tmp, sizeof(unsigned), 1, file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updateindex.o updateindex.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updatescores.o updatescores.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o valueshash.o valueshash.c arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c In file included from vcf.c:26: vcf.c: In function 'updateVcf': stdnuc.h:20:65: warning: right shift count >= width of type [-Wshift-count-overflow] #define getNuc(Comp,pos) ((Comp[pos >> 5] << ((pos & 31) << 1)) >> 62) ^~ vcf.c:122:16: note: in expansion of macro 'getNuc' nuc = bases[getNuc(template_seq, pos)]; ^~~~~~ ar -csru libkma.a align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o decon.o ef.o filebuff.o frags.o hashmap.o hashmapindex.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmers.o kmmap.o loadupdate.o makeindex.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o ar: `u' modifier ignored since `D' is the default (see `U') arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -o kma main.c libkma.a -lm -lpthread -lz -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -o kma_index kma_index.c libkma.a -lm -lz -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -o kma_shm kma_shm.c libkma.a -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c99 -o kma_update kma_update.c libkma.a -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kma' in '../kma_1.2.10a-1_armhf.deb'. dpkg-deb: building package 'kma-dbgsym' in '../kma-dbgsym_1.2.10a-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kma_1.2.10a-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-03T10:42:32Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-HB5c3b/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kma-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-HB5c3b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HB5c3b/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HB5c3b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HB5c3b/apt_archive ./ Sources [763 B] Get:5 copy:/<>/resolver-HB5c3b/apt_archive ./ Packages [833 B] Fetched 2559 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 8434 kB of archives. After this operation, 22.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HB5c3b/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8434 kB in 0s (29.5 MB/s) Selecting previously unselected package readline-common. (Reading database ... 17770 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. 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Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../24-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../28-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../33-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../34-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../35-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../36-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../37-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../38-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../39-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. 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Unpacking libmoo-perl (2.003004-2) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../52-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../53-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../54-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../55-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../56-libtype-tiny-perl_1.004004-1_all.deb ... Unpacking libtype-tiny-perl (1.004004-1) ... Selecting previously unselected package libyaml-0-2:amd64. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kma_1.2.10a-1_armhf.changes: ---------------------------- Format: 1.8 Date: Thu, 01 Aug 2019 13:58:31 +0200 Source: kma Binary: kma kma-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.2.10a-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kma - mapping genomic sequences to raw reads directly against redundant Changes: kma (1.2.10a-1) unstable; urgency=medium . * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 Checksums-Sha1: 78b57adc66e2c2e7823e8f7928ada56dca9ca98a 340132 kma-dbgsym_1.2.10a-1_armhf.deb aa53e6c6281918cd96d5c9cbe6a5401a329df2e2 4557 kma_1.2.10a-1_armhf.buildinfo ba8eaebc6036096a10e51c462e2301e957603c4f 102952 kma_1.2.10a-1_armhf.deb Checksums-Sha256: 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78b57adc66e2c2e7823e8f7928ada56dca9ca98a 340132 kma-dbgsym_1.2.10a-1_armhf.deb ba8eaebc6036096a10e51c462e2301e957603c4f 102952 kma_1.2.10a-1_armhf.deb Checksums-Sha256: 26d5a6e6c38d78df62a42c7264dcf64f21cee24797535d61a316cac1bf228297 340132 kma-dbgsym_1.2.10a-1_armhf.deb e1e74293ea3c0f4f4634974fb99b5dc97790d551b1310219a3998c40dc2bf492 102952 kma_1.2.10a-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 03 Aug 2019 10:42:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.72), debhelper (= 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Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1564660711" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kma-dbgsym_1.2.10a-1_armhf.deb ------------------------------ new Debian package, version 2.0. size 340132 bytes: control archive=700 bytes. 440 bytes, 12 lines control 401 bytes, 4 lines md5sums Package: kma-dbgsym Source: kma Version: 1.2.10a-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 376 Depends: kma (= 1.2.10a-1) Section: debug Priority: optional Description: debug symbols for kma Build-Ids: 8508a68512251631c596ec33c6367cffd21b2bc1 af2a494d8ec2623800690609065457aaae0becf4 cd340f9e10f3fae716996f92e266a140216799c6 drwxr-xr-x root/root 0 2019-08-01 11:58 ./ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.build-id/85/ -rw-r--r-- root/root 333964 2019-08-01 11:58 ./usr/lib/debug/.build-id/85/08a68512251631c596ec33c6367cffd21b2bc1.debug drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.build-id/af/ -rw-r--r-- root/root 22156 2019-08-01 11:58 ./usr/lib/debug/.build-id/af/2a494d8ec2623800690609065457aaae0becf4.debug drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.build-id/cd/ -rw-r--r-- root/root 8996 2019-08-01 11:58 ./usr/lib/debug/.build-id/cd/340f9e10f3fae716996f92e266a140216799c6.debug drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 3884 2019-08-01 11:58 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/kma.debug drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-08-01 11:58 ./usr/share/doc/kma-dbgsym -> kma kma_1.2.10a-1_armhf.deb ----------------------- new Debian package, version 2.0. size 102952 bytes: control archive=1068 bytes. 883 bytes, 17 lines control 543 bytes, 9 lines md5sums Package: kma Version: 1.2.10a-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 196 Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://bitbucket.org/genomicepidemiology/kma Description: mapping genomic sequences to raw reads directly against redundant databases KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes. drwxr-xr-x root/root 0 2019-08-01 11:58 ./ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/bin/ -rwxr-xr-x root/root 161384 2019-08-01 11:58 ./usr/bin/kma -rwxr-xr-x root/root 5672 2019-08-01 11:58 ./usr/bin/kma_index -rwxr-xr-x root/root 13864 2019-08-01 11:58 ./usr/bin/kma_shm drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/doc/kma/ -rw-r--r-- root/root 2989 2019-07-10 08:39 ./usr/share/doc/kma/README.md.gz -rw-r--r-- root/root 262 2019-08-01 11:58 ./usr/share/doc/kma/changelog.Debian.gz -rw-r--r-- root/root 952 2019-08-01 11:58 ./usr/share/doc/kma/copyright drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/man/ drwxr-xr-x root/root 0 2019-08-01 11:58 ./usr/share/man/man1/ -rw-r--r-- root/root 1312 2019-08-01 11:58 ./usr/share/man/man1/kma.1.gz -rw-r--r-- root/root 697 2019-08-01 11:58 ./usr/share/man/man1/kma_index.1.gz -rw-r--r-- root/root 426 2019-08-01 11:58 ./usr/share/man/man1/kma_shm.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 7576 Build-Time: 26 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 25 Job: kma_1.2.10a-1 Lintian: pass Machine Architecture: amd64 Package: kma Package-Time: 64 Source-Version: 1.2.10a-1 Space: 7576 Status: successful Version: 1.2.10a-1 -------------------------------------------------------------------------------- Finished at 2019-08-03T10:42:32Z Build needed 00:01:04, 7576k disk space