sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kma 1.3.3-1 (s390x) Thu, 03 Sep 2020 10:52:13 +0000 | +==============================================================================+ Package: kma Version: 1.3.3-1 Source Version: 1.3.3-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-a9c8ded9-d7f2-4e75-8367-4782cc283a7a' with '<>' I: NOTICE: Log filtering will replace 'build/kma-XcfUCu/resolver-3gAcdq' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-03-0801.39.pdiff [14.1 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-03-0801.39.pdiff [14.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-03-0801.39.pdiff [12.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-03-0801.39.pdiff [12.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8031 kB] Fetched 8259 kB in 2s (5161 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kma' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kam.git Please use: git clone https://salsa.debian.org/med-team/kam.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 746 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kma 1.3.3-1 (dsc) [1911 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kma 1.3.3-1 (tar) [739 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kma 1.3.3-1 (diff) [4760 B] Fetched 746 kB in 0s (34.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kma-XcfUCu/kma-1.3.3' with '<>' I: NOTICE: Log filtering will replace 'build/kma-XcfUCu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [499 B] Fetched 1864 B in 0s (100 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x gnupg git bzr libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 91.0 MB of archives. After this operation, 380 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.2.0-6 [199 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-17 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.35-2 [1976 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-6 [1737 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-6 [8663 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.0-3cross2 [198 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.0-3cross2 [6648 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.1.0-1 [16.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-3cross2 [195 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-1cross2 [1254 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.2.0-3cross2 [24.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.2.0-3cross2 [90.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.2.0-3cross2 [24.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.2.0-3cross2 [7940 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 10.2.0-3cross2 [293 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.2.0-3cross2 [441 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.2.0-3cross2 [125 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.0-3cross2 [661 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.0-3cross2 [13.0 MB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.1.0-1 [1464 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.7.6-1cross2 [1228 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-1cross2 [1990 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.0-3cross2 [1676 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.0-3cross2 [7307 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.1.0-1 [1180 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.2.0-6 [24.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.17-1 [87.3 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-3 [2471 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-17 [345 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.2.0-6 [8108 B] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.7.17-1 [1157 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.17-1 [105 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-3 [2018 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.2.0-6 [92.5 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.2.0-6 [25.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.2.0-6 [483 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.2.0-6 [125 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-17 [681 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-17 [1664 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 91.0 MB in 1s (106 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10439 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3_amd64.deb ... Unpacking bsdextrautils (2.36-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libc6-s390x-cross (2.31-1cross2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:s390x (5.7.17-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-10-base:s390x (10.2.0-6) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.7.6-1cross2) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-10-cross-base (10.2.0-3cross2) ... Setting up libitm1-s390x-cross (10.2.0-3cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.31-1cross2) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up libelf1:amd64 (0.180-1+b1) ... Setting up libgomp1-s390x-cross (10.2.0-3cross2) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-3cross2) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:s390x (9.3.0-17) ... Setting up libstdc++-10-dev:amd64 (10.2.0-6) ... Setting up g++-10 (10.2.0-6) ... Setting up libtool (2.4.6-14) ... Setting up libatomic1-s390x-cross (10.2.0-3cross2) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10.2.0-3cross2) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up cpp-s390x-linux-gnu (4:10.1.0-1) ... Setting up libstdc++6-s390x-cross (10.2.0-3cross2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (10.2.0-3cross2) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libubsan1-s390x-cross (10.2.0-3cross2) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.0-3cross2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.2.0-3cross2) ... Setting up gcc-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up gcc-s390x-linux-gnu (4:10.1.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up g++-s390x-linux-gnu (4:10.1.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.17-1) ... Setting up libgcc-s1:s390x (10.2.0-6) ... Setting up libc6:s390x (2.31-3) ... Setting up libcrypt-dev:s390x (1:4.4.17-1) ... Setting up libc6-dev:s390x (2.31-3) ... Setting up libstdc++6:s390x (10.2.0-6) ... Setting up libitm1:s390x (10.2.0-6) ... Setting up debhelper (13.2) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libgomp1:s390x (10.2.0-6) ... Setting up dh-autoreconf (19) ... Setting up libasan5:s390x (9.3.0-17) ... Setting up libatomic1:s390x (10.2.0-6) ... Setting up libubsan1:s390x (10.2.0-6) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libgcc-9-dev:s390x (9.3.0-17) ... Setting up libstdc++-9-dev:s390x (9.3.0-17) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.35-2 dpkg-dev_1.20.5 g++-10_10.2.0-6 gcc-10_10.2.0-6 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-6 libstdc++-10-dev-s390x-cross_10.2.0-3cross2 libstdc++-9-dev_9.3.0-17 libstdc++6_10.2.0-6 libstdc++6-s390x-cross_10.2.0-3cross2 linux-libc-dev_5.7.17-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2 binutils-common_2.35-2 binutils-s390x-linux-gnu_2.35-2 binutils-x86-64-linux-gnu_2.35-2 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-6 cpp-10-s390x-linux-gnu_10.2.0-3cross2 cpp-8_8.4.0-4 cpp-s390x-linux-gnu_4:10.1.0-1 cross-config_2.6.15-3.1 crossbuild-essential-s390x_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1 g++-10_10.2.0-6 g++-10-s390x-linux-gnu_10.2.0-3cross2 g++-s390x-linux-gnu_4:10.1.0-1 gcc_4:10.1.0-1 gcc-10_10.2.0-6 gcc-10-base_10.2.0-6 gcc-10-cross-base_10.2.0-3cross2 gcc-10-s390x-linux-gnu_10.2.0-3cross2 gcc-10-s390x-linux-gnu-base_10.2.0-3cross2 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-17 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libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.180-1+b1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-6 libgcc-10-dev-s390x-cross_10.2.0-3cross2 libgcc-9-dev_9.3.0-17 libgcc-s1_10.2.0-6 libgcc-s1-s390x-cross_10.2.0-3cross2 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-6 libgomp1-s390x-cross_10.2.0-3cross2 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-6 libitm1-s390x-cross_10.2.0-3cross2 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-6 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 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libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.7.17-1 linux-libc-dev-s390x-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kma Binary: kma Architecture: any Version: 1.3.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/genomicepidemiology/kma Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kma Vcs-Git: https://salsa.debian.org/med-team/kam.git Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: kma deb science optional arch=any Checksums-Sha1: 9dae8c19c1211a3394be182c856df02dad24c453 739180 kma_1.3.3.orig.tar.bz2 76df920266c5f88d4b2f0b10d5823825f8889430 4760 kma_1.3.3-1.debian.tar.xz Checksums-Sha256: 4331c5982d09cf083e5b04e62cb57566327b495c69bd9686ac393b6557083843 739180 kma_1.3.3.orig.tar.bz2 e95ede382251326af2a07f34d2f45c110e1bb76e16ca5a5d3d591220061f19e7 4760 kma_1.3.3-1.debian.tar.xz Files: b139ae037aa11be5c678aa3eaf69830a 739180 kma_1.3.3.orig.tar.bz2 e00c4ce164eb4172a8b50f6eb0e4ce6c 4760 kma_1.3.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl9P4bATHG1vZWxsZXJA 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84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kma_1.3.3-1.dsc dpkg-source: info: extracting kma in /<> dpkg-source: info: unpacking kma_1.3.3.orig.tar.bz2 dpkg-source: info: unpacking kma_1.3.3-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-a9c8ded9-d7f2-4e75-8367-4782cc283a7a SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package kma dpkg-buildpackage: info: source version 1.3.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o kma kma_index kma_shm kma_update libkma.a make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[1]: Entering directory '/<>' s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o align.o align.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alnfrags.o alnfrags.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ankers.o ankers.c ankers.c: In function ‘get_ankers’: ankers.c:202:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fread(qseq->seq, sizeof(long unsigned), qseq->complen, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:203:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fread(qseq->N + 1, sizeof(int), qseq->N[0], inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:204:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(out_Tem + 1, sizeof(int), *out_Tem, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ankers.c:205:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fread(header->seq, 1, header->len, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o assembly.o assembly.c assembly.c: In function ‘assemble_KMA_threaded’: assembly.c:370:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 370 | fread(buffer, sizeof(int), 8, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:391:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | fread(qseq->seq, 1, qseq->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:392:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 392 | fread(header->seq, 1, header->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c: In function ‘assemble_KMA_dense_threaded’: assembly.c:915:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 915 | fread(buffer, sizeof(int), 8, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:942:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 942 | fread(qseq->seq, 1, qseq->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:943:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 943 | fread(header->seq, 1, header->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c: In function ‘skip_assemble_KMA’: assembly.c:1238:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1238 | fread(buffer, sizeof(int), 8, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1258:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1258 | fread(qseq->seq, 1, qseq->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1259:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1259 | fread(header->seq, 1, header->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c: In function ‘assemble_KMA’: assembly.c:1794:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1794 | fread(buffer, sizeof(int), 8, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1815:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1815 | fread(qseq->seq, 1, qseq->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ assembly.c:1816:6: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1816 | fread(header->seq, 1, header->len, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chain.o chain.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compdna.o compdna.c compdna.c: In function ‘getComp’: compdna.c:322:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 322 | fread(&compressor->seqlen, sizeof(int), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compkmers.o compkmers.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compress.o compress.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o decon.o decon.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dist.o dist.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ef.o ef.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filebuff.o filebuff.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frags.o frags.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmap.o hashmap.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapcci.o hashmapcci.c hashmapcci.c: In function ‘hashMapCCI_load’: hashmapcci.c:472:2: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 472 | read(seq, src->seq, ((src->len >> 5) + 1) * sizeof(long unsigned)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashmapcci.c: In function ‘hashMapCCI_load_thread’: hashmapcci.c:499:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 499 | read(seq, src->seq, ((src->len >> 5) + 1) * sizeof(long unsigned)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkma.o hashmapkma.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashmapkmers.o hashmapkmers.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o index.o index.c index.c: In function ‘index_main’: index.c:340:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 340 | fread(inputfiles[filecount - 1], 1, size - 1, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:390:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fread(deconfiles[deconcount - 1], 1, size - 1, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kma.o kma.c kma.c: In function ‘kma_main’: kma.c:1143:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1143 | fread(&qseq.len, sizeof(int), 1, templatefile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmapipe.o kmapipe.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmeranker.o kmeranker.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmers.o kmers.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kmmap.o kmmap.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loadupdate.o loadupdate.c loadupdate.c: In function ‘load_DBs’: loadupdate.c:175:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 175 | fread(&DB_size, sizeof(unsigned), 1, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:180:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fread(*template_lengths, sizeof(unsigned), DB_size, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:181:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 181 | fread(*template_slengths, sizeof(unsigned), DB_size, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:182:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 182 | fread(*template_ulengths, sizeof(unsigned), DB_size, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ loadupdate.c:190:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fread(*template_lengths, sizeof(unsigned), DB_size, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeindex.o makeindex.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mt1.o mt1.c mt1.c: In function ‘runKMA_Mt1’: mt1.c:178:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 178 | fread(&DB_size, sizeof(int), 1, DB_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o nw.o nw.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o printconsensus.o printconsensus.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qualcheck.o qualcheck.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runinput.o runinput.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o runkma.o runkma.c runkma.c: In function ‘runKMA’: runkma.c:576:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 576 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:577:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 577 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:578:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 578 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:579:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 579 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:580:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 580 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:675:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 675 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:679:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 679 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:680:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 680 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:724:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 724 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:777:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 777 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:820:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 820 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:844:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 844 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:860:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 860 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:861:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 861 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:862:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 862 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:863:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 863 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:864:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 864 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1010:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1010 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1014:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1014 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1015:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1015 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c: In function ‘runKMA_MEM’: runkma.c:1658:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1658 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1659:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1659 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1660:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1660 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1661:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1661 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1662:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1662 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1757:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1757 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1761:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1761 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1762:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1762 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1806:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1806 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1859:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1859 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1902:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1902 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1926:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1926 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1942:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1942 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1943:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1943 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1944:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1944 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1945:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1945 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:1946:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1946 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2089:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2089 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2093:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2093 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ runkma.c:2094:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2094 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o savekmers.o savekmers.c savekmers.c: In function ‘loadFsa’: savekmers.c:83:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 83 | fread(qseq->seq, sizeof(long unsigned), qseq->complen, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ savekmers.c:84:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread(qseq->N + 1, sizeof(int), qseq->N[0], inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ savekmers.c:85:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fread(header->seq, 1, header->len, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seq2fasta.o seq2fasta.c seq2fasta.c: In function ‘printFastas’: seq2fasta.c:84:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread(compseq, sizeof(long unsigned), (template_lengths[i] >> 5) + 1, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seq2fasta.c: In function ‘printFastaList’: seq2fasta.c:146:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | fread(compseq, sizeof(long unsigned), (template_lengths[i] >> 5) + 1, seqfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqmenttree.o seqmenttree.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqparse.o seqparse.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o shm.o shm.c shm.c: In function ‘hashMapKMA_setupSHM’: shm.c:95:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | fread(dest->exist, 1, size, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:115:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | fread(dest->values, 1, size, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:138:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 138 | fread(dest->key_index, 1, size, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c:158:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | fread(dest->value_index, 1, size, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function ‘length_setupSHM’: shm.c:263:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 263 | fread(template_lengths, sizeof(unsigned), size / sizeof(unsigned), file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function ‘seq_setupSHM’: shm.c:305:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fread(seq, sizeof(long unsigned), size / sizeof(long unsigned), file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ shm.c: In function ‘name_setupSHM’: shm.c:347:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread(template_names, 1, size, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sparse.o sparse.c sparse.c: In function ‘load_DBs_Sparse’: sparse.c:156:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fread(*template_lengths, sizeof(int), DB_size, DB_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sparse.c:157:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 157 | fread(*template_ulengths, sizeof(int), DB_size, DB_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sparse.c:197:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | fread(template_names[0], 1, file_size, DB_file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o spltdb.o spltdb.c spltdb.c: In function ‘runKMA_spltDB’: spltdb.c:461:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 461 | fread(template_lengths + dbBiases[i], sizeof(int), bias, inputfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:875:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 875 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:876:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 876 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:877:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 877 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:878:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 878 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:879:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 879 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:974:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 974 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:978:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 978 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:979:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 979 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1023:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1023 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1076:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1076 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1119:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1119 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1143:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1143 | fread(stats, sizeof(int), 2, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1159:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1159 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1160:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1160 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1161:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1161 | fread(best_start_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1162:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1162 | fread(best_end_pos, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1163:4: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1163 | fread(bestTemplates, sizeof(int), bestHits, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1307:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1307 | fread(stats, sizeof(int), 3, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1311:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1311 | fread(qseq->seq, 1, qseq->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spltdb.c:1312:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1312 | fread(header->seq, 1, header->len, frag_in_raw); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdnuc.o stdnuc.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o stdstat.o stdstat.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tmp.o tmp.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update.o update.c update.c: In function ‘convertLength_014to015’: update.c:40:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | fread(&size, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c: In function ‘hashMapKMA_014to015’: update.c:88:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | fread(&DB_size, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:89:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | fread(&dest->kmersize, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:90:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | fread(&dest->prefix_len, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:91:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread(&dest->prefix, sizeof(long unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:92:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fread(&dest->size, sizeof(long unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:100:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 100 | fread(&tmp, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:102:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fread(&seqsize, sizeof(unsigned), 1, file); //seq size | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:103:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 103 | fread(&tmp, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ update.c:105:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | fread(&tmp, sizeof(unsigned), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updateindex.o updateindex.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o updatescores.o updatescores.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o valueshash.o valueshash.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xml.o xml.c ar -csru libkma.a align.o alnfrags.o ankers.o assembly.o chain.o compdna.o compkmers.o compress.o decon.o dist.o ef.o filebuff.o frags.o hashmap.o hashmapcci.o hashmapkma.o hashmapkmers.o hashtable.o index.o kma.o kmapipe.o kmeranker.o kmers.o kmmap.o loadupdate.o makeindex.o matrix.o mt1.o nw.o pherror.o printconsensus.o qseqs.o qualcheck.o runinput.o runkma.o sam.o savekmers.o seq2fasta.o seqmenttree.o seqparse.o shm.o sparse.o spltdb.o stdnuc.o stdstat.o tmp.o update.o updateindex.o updatescores.o valueshash.o vcf.o xml.o ar: `u' modifier ignored since `D' is the default (see `U') s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -o kma main.c libkma.a -lm -lpthread -lz -Wl,-z,relro -Wl,-z,now s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -o kma_index kma_index.c libkma.a -lm -lz -Wl,-z,relro -Wl,-z,now s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -o kma_shm kma_shm.c libkma.a -Wl,-z,relro -Wl,-z,now s390x-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c99 -o kma_update kma_update.c libkma.a -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'kma' in '../kma_1.3.3-1_s390x.deb'. dpkg-deb: building package 'kma-dbgsym' in '../kma-dbgsym_1.3.3-1_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kma_1.3.3-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-09-03T10:53:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kma_1.3.3-1_s390x.changes: -------------------------- Format: 1.8 Date: Wed, 02 Sep 2020 20:16:06 +0200 Source: kma Binary: kma kma-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 1.3.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: kma - mapping genomic sequences to raw reads directly against redundant Changes: kma (1.3.3-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 92f87a0874d1211e70ec54bed4c5adbb1cd78d1a 564376 kma-dbgsym_1.3.3-1_s390x.deb b2ffe81378cb84e38f2b6b40abc3c640d8e62dba 4471 kma_1.3.3-1_s390x.buildinfo 78c85395ca950331e677f87b93a887d2074d05b8 169184 kma_1.3.3-1_s390x.deb Checksums-Sha256: 09c715837893d81c9df3399755c184737f36f0438d39607775d540114e6ab4a2 564376 kma-dbgsym_1.3.3-1_s390x.deb 429cd526c19e1b3440035d4d4fc6ef7e8938bad65a29f3e5302eb77935824ff4 4471 kma_1.3.3-1_s390x.buildinfo ba5a7cc4bda1709e536609b54700d58151f198703c6904f36499cb833cb9970e 169184 kma_1.3.3-1_s390x.deb Files: b58ff063bdceb29fecc4e4b35f30a0d7 564376 debug optional kma-dbgsym_1.3.3-1_s390x.deb bc7cf9a09252290d70efc2bbc8e8d628 4471 science optional kma_1.3.3-1_s390x.buildinfo 0388f57dba0bf466ba950b627073114e 169184 science optional kma_1.3.3-1_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kma Binary: kma kma-dbgsym Architecture: s390x Version: 1.3.3-1 Checksums-Md5: b58ff063bdceb29fecc4e4b35f30a0d7 564376 kma-dbgsym_1.3.3-1_s390x.deb 0388f57dba0bf466ba950b627073114e 169184 kma_1.3.3-1_s390x.deb Checksums-Sha1: 92f87a0874d1211e70ec54bed4c5adbb1cd78d1a 564376 kma-dbgsym_1.3.3-1_s390x.deb 78c85395ca950331e677f87b93a887d2074d05b8 169184 kma_1.3.3-1_s390x.deb Checksums-Sha256: 09c715837893d81c9df3399755c184737f36f0438d39607775d540114e6ab4a2 564376 kma-dbgsym_1.3.3-1_s390x.deb ba5a7cc4bda1709e536609b54700d58151f198703c6904f36499cb833cb9970e 169184 kma_1.3.3-1_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 03 Sep 2020 10:53:05 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35-2), binutils-common (= 2.35-2), binutils-x86-64-linux-gnu (= 2.35-2), bsdextrautils (= 2.36-3), bsdutils (= 1:2.36-3), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-3), cpp (= 4:10.1.0-1), cpp-10 (= 10.2.0-6), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debianutils (= 4.11.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.1.0-1), g++-10 (= 10.2.0-6), gcc (= 4:10.1.0-1), gcc-10 (= 10.2.0-6), gcc-10-base (= 10.2.0-6), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-6), libatomic1 (= 10.2.0-6), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35-2), libblkid1 (= 2.36-3), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-6), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35-2), libctf0 (= 2.35-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.180-1+b1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-6), libgcc-s1 (= 10.2.0-6), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-6), libgpg-error0 (= 1.38-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-6), liblsan0 (= 10.2.0-6), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.0-6), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36-3), libstdc++-10-dev (= 10.2.0-6), libstdc++6 (= 10.2.0-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.4-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-6), libubsan1 (= 10.2.0-6), libuchardet0 (= 0.0.7-1), libudev1 (= 246.4-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3), libxml2 (= 2.9.10+dfsg-5+b1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.7.17-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-4), tar (= 1.30+dfsg-7), util-linux (= 2.36-3), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1599070566" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kma-dbgsym_1.3.3-1_s390x.deb ---------------------------- new Debian package, version 2.0. size 564376 bytes: control archive=696 bytes. 436 bytes, 12 lines control 397 bytes, 4 lines md5sums Package: kma-dbgsym Source: kma Version: 1.3.3-1 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 608 Depends: kma (= 1.3.3-1) Section: debug Priority: optional Description: debug symbols for kma Build-Ids: bbc170f48780ba8c7306b92ffc2b48872f824081 e0084d14f8f9b8fcb11a1f12ab5606ac1e686b64 ff0e235e9145cf01035e5b26762bb5d0522d132d drwxr-xr-x root/root 0 2020-09-02 18:16 ./ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.build-id/bb/ -rw-r--r-- root/root 94568 2020-09-02 18:16 ./usr/lib/debug/.build-id/bb/c170f48780ba8c7306b92ffc2b48872f824081.debug drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.build-id/e0/ -rw-r--r-- root/root 19264 2020-09-02 18:16 ./usr/lib/debug/.build-id/e0/084d14f8f9b8fcb11a1f12ab5606ac1e686b64.debug drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.build-id/ff/ -rw-r--r-- root/root 485496 2020-09-02 18:16 ./usr/lib/debug/.build-id/ff/0e235e9145cf01035e5b26762bb5d0522d132d.debug drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 6552 2020-09-02 18:16 ./usr/lib/debug/.dwz/s390x-linux-gnu/kma.debug drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-09-02 18:16 ./usr/share/doc/kma-dbgsym -> kma kma_1.3.3-1_s390x.deb --------------------- new Debian package, version 2.0. size 169184 bytes: control archive=1068 bytes. 882 bytes, 17 lines control 543 bytes, 9 lines md5sums Package: kma Version: 1.3.3-1 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 527 Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://bitbucket.org/genomicepidemiology/kma Description: mapping genomic sequences to raw reads directly against redundant databases KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes. drwxr-xr-x root/root 0 2020-09-02 18:16 ./ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/bin/ -rwxr-xr-x root/root 416208 2020-09-02 18:16 ./usr/bin/kma -rwxr-xr-x root/root 84088 2020-09-02 18:16 ./usr/bin/kma_index -rwxr-xr-x root/root 18496 2020-09-02 18:16 ./usr/bin/kma_shm drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/doc/kma/ -rw-r--r-- root/root 2947 2020-08-10 13:11 ./usr/share/doc/kma/README.md.gz -rw-r--r-- root/root 629 2020-09-02 18:16 ./usr/share/doc/kma/changelog.Debian.gz -rw-r--r-- root/root 952 2020-09-02 18:16 ./usr/share/doc/kma/copyright drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/man/ drwxr-xr-x root/root 0 2020-09-02 18:16 ./usr/share/man/man1/ -rw-r--r-- root/root 1312 2020-09-02 18:16 ./usr/share/man/man1/kma.1.gz -rw-r--r-- root/root 697 2020-09-02 18:16 ./usr/share/man/man1/kma_index.1.gz -rw-r--r-- root/root 426 2020-09-02 18:16 ./usr/share/man/man1/kma_shm.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [540 B] Get:5 copy:/<>/apt_archive ./ Packages [628 B] Fetched 2131 B in 0s (88.5 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:s390x t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 7532 kB of archives. After this operation, 22.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.33.0-1 [790 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 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[12.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010005-1 [340 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.92.0 [1283 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7532 kB in 0s (30.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 20937 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... Selecting previously unselected package gpg. 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Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.92.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 12720 Build-Time: 24 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 19 Job: kma_1.3.3-1 Lintian: pass Machine Architecture: amd64 Package: kma Package-Time: 53 Source-Version: 1.3.3-1 Space: 12720 Status: successful Version: 1.3.3-1 -------------------------------------------------------------------------------- Finished at 2020-09-03T10:53:06Z Build needed 00:00:53, 12720k disk space