sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| kraken2 2.0.7~beta-1 (armel)                 Thu, 30 May 2019 19:59:21 +0000 |
+==============================================================================+

Package: kraken2
Version: 2.0.7~beta-1
Source Version: 2.0.7~beta-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-06024947-da94-47cd-a9d8-988fdd170d3e' with '<<CHROOT>>'

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| Update chroot                                                                |
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Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-30-0819.31.pdiff [1341 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-30-0819.31.pdiff [466 B]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-30-0819.31.pdiff [1341 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-30-0819.31.pdiff [466 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [8012 kB]
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Reading package lists...
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Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kraken2.git
Please use:
git clone https://salsa.debian.org/med-team/kraken2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 411 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (dsc) [1988 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (tar) [71.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (diff) [337 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kraken2-r8SuzA/kraken2-2.0.7~beta' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kraken2-r8SuzA' with '<<BUILDDIR>>'

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| Install crossbuild-essential                                                 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64
Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-rlXDnU/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release [957 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Sources [359 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Packages [450 B]
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Reading package lists...
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Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi
  cross-config crossbuild-essential-armel dpkg-cross file
  g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi
  gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi
  libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross
  libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl
  libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl
  libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63
  libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1
  libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev-armel-cross sensible-utils ucf
Suggested packages:
  binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc
  libstdc++6-8-dbg-armel-cross libgcc1-dbg-armel-cross
  libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross
  libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross
  libubsan1-dbg-armel-cross libmpx2-dbg-armel-cross
  libquadmath0-dbg-armel-cross manpages-dev autoconf automake libtool flex
  bison gdb-arm-linux-gnueabi gcc-doc libyaml-shell-perl
Recommended packages:
  libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
The following NEW packages will be installed:
  binutils-arm-linux-gnueabi cpp-8-arm-linux-gnueabi cpp-arm-linux-gnueabi
  cross-config crossbuild-essential-armel dpkg-cross file
  g++-8-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-8-arm-linux-gnueabi
  gcc-8-arm-linux-gnueabi-base gcc-8-cross-base gcc-arm-linux-gnueabi
  libasan5-armel-cross libatomic1-armel-cross libc6-armel-cross
  libc6-dev-armel-cross libconfig-auto-perl libconfig-inifiles-perl
  libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl
  libgcc-8-dev-armel-cross libgcc1-armel-cross libgomp1-armel-cross libicu63
  libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1
  libstdc++-8-dev-armel-cross libstdc++6-armel-cross libubsan1-armel-cross
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev-armel-cross sbuild-build-depends-core-dummy:armel
  sensible-utils ucf
0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded.
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After this operation, 154 MB of additional disk space will be used.
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Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB]
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Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.31.1-16 [2832 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi-base amd64 8.3.0-7cross1 [191 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [6545 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:8.3.0-1 [16.5 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.28-10cross2 [1190 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:8.3.0-7cross1 [38.4 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 8.3.0-7cross1 [65.6 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 8.3.0-7cross1 [8812 B]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 8.3.0-7cross1 [288 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 8.3.0-7cross1 [311 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 8.3.0-7cross1 [102 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armel-cross all 8.3.0-7cross1 [601 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [6970 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:8.3.0-1 [1460 B]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 4.19.28-2cross2 [1228 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.28-10cross2 [2184 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armel-cross all 8.3.0-7cross1 [1543 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabi amd64 8.3.0-7cross1 [7123 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:8.3.0-1 [1176 B]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.6 [6568 B]
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Setting up liblocale-gettext-perl (1.07-3+b4) ...
Setting up libgomp1-armel-cross (8.3.0-7cross1) ...
Setting up libatomic1-armel-cross (8.3.0-7cross1) ...
Setting up libgcc1-armel-cross (1:8.3.0-7cross1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libstdc++6-armel-cross (8.3.0-7cross1) ...
Setting up libxml-sax-perl (1.00+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libasan5-armel-cross (8.3.0-7cross1) ...
Setting up libubsan1-armel-cross (8.3.0-7cross1) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libgcc-8-dev-armel-cross (8.3.0-7cross1) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up gcc-8-arm-linux-gnueabi (8.3.0-7cross1) ...
Setting up libstdc++-8-dev-armel-cross (8.3.0-7cross1) ...
Setting up libconfig-auto-perl (0.44-1) ...
Setting up gcc-arm-linux-gnueabi (4:8.3.0-1) ...
Setting up libdebian-dpkgcross-perl (2.6.15-3) ...
Setting up g++-8-arm-linux-gnueabi (8.3.0-7cross1) ...
Setting up g++-arm-linux-gnueabi (4:8.3.0-1) ...
Setting up dpkg-cross (2.6.15-3) ...
Setting up crossbuild-essential-armel (12.6) ...
Setting up sbuild-build-depends-core-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armel included in any)

Setup apt archive
-----------------

dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<<BUILDDIR>>/resolver-rlXDnU/apt_archive/sbuild-build-depends-essential-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Sources [481 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Packages [570 B]
Fetched 2014 B in 0s (105 kB/s)
Reading package lists...
Reading package lists...

Install essential build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-essential-dummy:armel
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 840 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 840 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-essential-dummy:armel.
(Reading database ... 15001 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armel.deb ...
Unpacking sbuild-build-depends-essential-dummy:armel (0.invalid.0) ...
Setting up sbuild-build-depends-essential-dummy:armel (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~)
Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~)
dpkg-deb: building package 'sbuild-build-depends-kraken2-dummy' in '/<<BUILDDIR>>/resolver-rlXDnU/apt_archive/sbuild-build-depends-kraken2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kraken2-dummy
dpkg-scanpackages: info: Wrote 3 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Sources [632 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Packages [715 B]
Fetched 2310 B in 0s (120 kB/s)
Reading package lists...
Reading package lists...

Install kraken2 build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel
  libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel
  libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armel libstdc++6:armel libtool libubsan1:armel libuchardet0
  linux-libc-dev:armel m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel
  libstdc++-8-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armel gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel
  libatomic1:armel libbsd0 libc6:armel libc6-dev:armel libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armel libgcc1:armel
  libglib2.0-0 libgomp1:armel libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armel libstdc++6:armel libtool libubsan1:armel libuchardet0
  linux-libc-dev:armel m4 man-db po-debconf
  sbuild-build-depends-kraken2-dummy:armel
0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.6 MB of archives.
After this operation, 82.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ sbuild-build-depends-kraken2-dummy 0.invalid.0 [876 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main armel gcc-8-base armel 8.3.0-7 [191 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:8.3.0-7 [38.4 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.28-10 [2399 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 8.3.0-7 [325 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 8.3.0-7 [317 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 8.3.0-7 [8948 B]
Get:35 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 4.19.37-3 [1167 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.28-10 [2185 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 8.3.0-7 [67.1 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 8.3.0-7 [103 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main armel libgcc-8-dev armel 8.3.0-7 [604 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-8-dev armel 8.3.0-7 [1571 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 18.6 MB in 0s (51.0 MB/s)
Selecting previously unselected package libbsd0:amd64.
(Reading database ... 15001 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ...
Unpacking libbsd0:amd64 (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:amd64.
Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ...
Unpacking libsigsegv2:amd64 (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../09-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libtool.
Preparing to unpack .../13-libtool_2.4.6-10_all.deb ...
Unpacking libtool (2.4.6-10) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../14-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ...
Unpacking libelf1:amd64 (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../19-dwz_0.12-3_amd64.deb ...
Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:amd64.
Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ...
Unpacking libglib2.0-0:amd64 (2.58.3-1) ...
Selecting previously unselected package libcroco3:amd64.
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Unpacking libcroco3:amd64 (0.6.12-3) ...
Selecting previously unselected package libncurses6:amd64.
Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ...
Unpacking libncurses6:amd64 (6.1+20181013-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
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Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../26-debhelper_12.1.1_all.deb ...
Unpacking debhelper (12.1.1) ...
Selecting previously unselected package gcc-8-base:armel.
Preparing to unpack .../27-gcc-8-base_8.3.0-7_armel.deb ...
Unpacking gcc-8-base:armel (8.3.0-7) ...
Selecting previously unselected package libgcc1:armel.
Preparing to unpack .../28-libgcc1_1%3a8.3.0-7_armel.deb ...
Unpacking libgcc1:armel (1:8.3.0-7) ...
Selecting previously unselected package libc6:armel.
Preparing to unpack .../29-libc6_2.28-10_armel.deb ...
Unpacking libc6:armel (2.28-10) ...
Selecting previously unselected package libstdc++6:armel.
Preparing to unpack .../30-libstdc++6_8.3.0-7_armel.deb ...
Unpacking libstdc++6:armel (8.3.0-7) ...
Selecting previously unselected package libasan5:armel.
Preparing to unpack .../31-libasan5_8.3.0-7_armel.deb ...
Unpacking libasan5:armel (8.3.0-7) ...
Selecting previously unselected package libatomic1:armel.
Preparing to unpack .../32-libatomic1_8.3.0-7_armel.deb ...
Unpacking libatomic1:armel (8.3.0-7) ...
Selecting previously unselected package linux-libc-dev:armel.
Preparing to unpack .../33-linux-libc-dev_4.19.37-3_armel.deb ...
Unpacking linux-libc-dev:armel (4.19.37-3) ...
Selecting previously unselected package libc6-dev:armel.
Preparing to unpack .../34-libc6-dev_2.28-10_armel.deb ...
Unpacking libc6-dev:armel (2.28-10) ...
Selecting previously unselected package libgomp1:armel.
Preparing to unpack .../35-libgomp1_8.3.0-7_armel.deb ...
Unpacking libgomp1:armel (8.3.0-7) ...
Selecting previously unselected package libubsan1:armel.
Preparing to unpack .../36-libubsan1_8.3.0-7_armel.deb ...
Unpacking libubsan1:armel (8.3.0-7) ...
Selecting previously unselected package libgcc-8-dev:armel.
Preparing to unpack .../37-libgcc-8-dev_8.3.0-7_armel.deb ...
Unpacking libgcc-8-dev:armel (8.3.0-7) ...
Selecting previously unselected package libstdc++-8-dev:armel.
Preparing to unpack .../38-libstdc++-8-dev_8.3.0-7_armel.deb ...
Unpacking libstdc++-8-dev:armel (8.3.0-7) ...
Selecting previously unselected package sbuild-build-depends-kraken2-dummy:armel.
Preparing to unpack .../39-sbuild-build-depends-kraken2-dummy_0.invalid.0_armel.deb ...
Unpacking sbuild-build-depends-kraken2-dummy:armel (0.invalid.0) ...
Setting up libpipeline1:amd64 (1.5.1-2) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:amd64 (2.58.3-1) ...
No schema files found: doing nothing.
Setting up linux-libc-dev:armel (4.19.37-3) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:amd64 (6.1+20181013-2) ...
Setting up libsigsegv2:amd64 (2.12-2) ...
Setting up gcc-8-base:armel (8.3.0-7) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libcroco3:amd64 (0.6.12-3) ...
Setting up libuchardet0:amd64 (0.0.6-3) ...
Setting up libbsd0:amd64 (0.9.1-2) ...
Setting up libelf1:amd64 (0.176-1.1) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libtool (2.4.6-10) ...
Setting up m4 (1.4.18-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libc6:armel (2.28-10) ...
Setting up libc6-dev:armel (2.28-10) ...
Setting up libgcc1:armel (1:8.3.0-7) ...
Setting up libgomp1:armel (8.3.0-7) ...
Setting up dh-autoreconf (19) ...
Setting up libatomic1:armel (8.3.0-7) ...
Setting up libstdc++6:armel (8.3.0-7) ...
Setting up debhelper (12.1.1) ...
Setting up libasan5:armel (8.3.0-7) ...
Setting up libubsan1:armel (8.3.0-7) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up libgcc-8-dev:armel (8.3.0-7) ...
Setting up libstdc++-8-dev:armel (8.3.0-7) ...
Setting up sbuild-build-depends-kraken2-dummy:armel (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armel-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-arm-linux-gnueabi_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-arm-linux-gnueabi_8.3.0-7cross1 cpp-arm-linux-gnueabi_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-3 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.1-3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-arm-linux-gnueabi_8.3.0-7cross1 g++-arm-linux-gnueabi_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-arm-linux-gnueabi_8.3.0-7cross1 gcc-8-arm-linux-gnueabi-base_8.3.0-7cross1 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-arm-linux-gnueabi_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libasan5-armel-cross_8.3.0-7cross1 libatomic1_8.3.0-7 libatomic1-armel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armel-cross_2.28-10cross2 libc6-dev_2.28-10 libc6-dev-armel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.1-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.6 libelf1_0.176-1.1 libext2fs2_1.45.1-3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-armel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-armel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-3 libgomp1_8.3.0-7 libgomp1-armel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.1-3 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armel-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libubsan1-armel-cross_8.3.0-7cross1 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-armel-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-kraken2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Mar 14 13:19:30 2019 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kraken2_2.0.7~beta-1.dsc
dpkg-source: info: extracting kraken2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking kraken2_2.0.7~beta.orig.tar.gz
dpkg-source: info: unpacking kraken2_2.0.7~beta-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_install.patch
dpkg-source: info: applying hardening+debug_options.patch
dpkg-source: info: applying fix_reading_fasta.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-06024947-da94-47cd-a9d8-988fdd170d3e
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kraken2
dpkg-buildpackage: info: source version 2.0.7~beta-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
 fakeroot debian/rules clean
dh clean  --sourcedirectory=src
   dh_auto_clean -O--sourcedirectory=src
	cd src && make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_autoreconf_clean -O--sourcedirectory=src
   dh_clean -O--sourcedirectory=src
 debian/rules build-arch
dh build-arch  --sourcedirectory=src
   dh_update_autotools_config -a -O--sourcedirectory=src
   dh_autoreconf -a -O--sourcedirectory=src
   dh_auto_configure -a -O--sourcedirectory=src
   dh_auto_build -a -O--sourcedirectory=src
	cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seqreader.o seqreader.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmscanner.o mmscanner.cc
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kraken2::MinimizerData&}; _Tp = kraken2::MinimizerData; _Alloc = std::allocator<kraken2::MinimizerData>]':
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<kraken2::MinimizerData>::iterator' {aka '__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In member function 'uint64_t* kraken2::MinimizerScanner::NextMinimizer(bool*)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o omp_hack.o omp_hack.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o utilities.o utilities.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  estimate_capacity.cc seqreader.o mmscanner.o omp_hack.o utilities.o   -o estimate_capacity
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmap_file.o mmap_file.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o compact_hash.o compact_hash.cc
compact_hash.cc: In constructor 'kraken2::CompactHashTable::CompactHashTable(size_t, size_t, size_t)':
compact_hash.cc:32:27: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
   } catch (std::bad_alloc ex) {
                           ^~
compact_hash.cc: In member function 'void kraken2::CompactHashTable::LoadTable(const char*, bool)':
compact_hash.cc:86:29: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
     } catch (std::bad_alloc ex) {
                             ^~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o taxonomy.o taxonomy.cc
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::set<long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function 'void kraken2::NCBITaxonomy::MarkNode(uint64_t)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In constructor 'kraken2::NCBITaxonomy::NCBITaxonomy(std::__cxx11::string, std::__cxx11::string)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In member function 'void kraken2::NCBITaxonomy::ConvertToKrakenTaxonomy(const char*)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  build_db.cc mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o   -o build_db
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function 'void ReadIDToTaxonMap(std::map<std::__cxx11::basic_string<char>, long long unsigned int>&, std::__cxx11::string&)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h: In function '_Z16ProcessSequencesR7OptionsRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEySt4lessIS7_ESaISt4pairIKS7_yEEERN7kraken216CompactHashTableERNSG_8TaxonomyE._omp_fn.0':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o reports.o reports.cc
In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h: In function 'void kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o aa_translate.o aa_translate.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  classify.cc reports.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o   -o classify
classify.cc: In function 'void ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)':
classify.cc:313:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'long long unsigned int' [-Wformat=]
           sprintf(buffer, " kraken:taxid|%lu", call);
                           ^~~~~~~~~~~~~~~~~~~  ~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_val<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
     __push_heap(_RandomAccessIterator __first,
     ^~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function 'taxid_t ClassifySequence(kraken2::Sequence&, kraken2::Sequence&, std::ostringstream&, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, kraken2::MinimizerScanner&, std::vector<long long unsigned int>&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
 }
 ^
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OutputData&}; _Tp = OutputData; _Alloc = std::allocator<OutputData>]':
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<OutputData>::iterator' {aka '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<OutputData>::iterator' {aka '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabi/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h: In function '_Z12ProcessFilesPKcS0_PN7kraken213KeyValueStoreERNS1_8TaxonomyER12IndexOptionsR7OptionsR19ClassificationStatsR16OutputStreamDataRSt13unordered_mapIyySt4hashIyESt8equal_toIyESaISt4pairIKyyEEE._omp_fn.0':
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  dump_table.cc mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o   -o dump_table
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  lookup_accession_numbers.cc mmap_file.o omp_hack.o utilities.o   -o lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_auto_test -a -O--sourcedirectory=src
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch  --sourcedirectory=src
   dh_testroot -a -O--sourcedirectory=src
   dh_prep -a -O--sourcedirectory=src
   dh_installdirs -a -O--sourcedirectory=src
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- KRAKEN2_DIR=/<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
	cd src && make -j1 install DESTDIR=/<<BUILDDIR>>/kraken2-2.0.7\~beta/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/<<BUILDDIR>>/kraken2-2.0.7\~beta/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
./install_kraken2.sh /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'

Kraken 2 installation complete.

To make things easier for you, you may want to copy/symlink the following
files into a directory in your PATH:
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-build
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-inspect
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--sourcedirectory=src
   dh_installchangelogs -a -O--sourcedirectory=src
   dh_installman -a -O--sourcedirectory=src
   dh_installinit -a -O--sourcedirectory=src
   dh_installsystemduser -a -O--sourcedirectory=src
   dh_perl -a -O--sourcedirectory=src
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
for file in /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken* ; do \
    if ! echo ${file} | grep -q '\.pm$' ; then \
	ln -s ../lib/kraken2/`basename ${file}` /<<PKGBUILDDIR>>/debian/kraken2/usr/bin/`basename ${file}` ; \
    fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a -O--sourcedirectory=src
   dh_compress -a -O--sourcedirectory=src
   dh_fixperms -a -O--sourcedirectory=src
   dh_missing -a -O--sourcedirectory=src
   dh_dwz -a -O--sourcedirectory=src
   dh_strip -a -O--sourcedirectory=src
   dh_makeshlibs -a -O--sourcedirectory=src
   dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/lookup_accession_numbers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/estimate_capacity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/build_db contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/dump_table contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/classify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a -O--sourcedirectory=src
   dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a -O--sourcedirectory=src
   dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'kraken2' in '../kraken2_2.0.7~beta-1_armel.deb'.
dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.0.7~beta-1_armel.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../kraken2_2.0.7~beta-1_armel.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-05-30T20:00:36Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<BUILDDIR>>/resolver-rlXDnU/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kraken2-dummy sbuild-build-depends-lintian-dummy
dpkg-scanpackages: info: Wrote 4 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Sources [750 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ Packages [828 B]
Fetched 2541 B in 0s (145 kB/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
  libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
  libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
  libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
  libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
  libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
  libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common t1utils
Suggested packages:
  libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl
  binutils-multiarch libtext-template-perl readline-doc
Recommended packages:
  gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
  libsereal-perl libtest-fatal-perl libtest-refcount-perl
  libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl
  libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
  libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
  libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
  libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
  libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
  libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
  libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common
  sbuild-build-depends-lintian-dummy:armel t1utils
0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 7768 kB of archives.
After this operation, 20.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rlXDnU/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB]
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Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.15.0 [1181 kB]
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I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


kraken2_2.0.7~beta-1_armel.changes:
-----------------------------------

Format: 1.8
Date: Thu, 14 Mar 2019 14:13:17 +0100
Source: kraken2
Binary: kraken2 kraken2-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armel
Version: 2.0.7~beta-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 kraken2    - taxonomic classification system using exact k-mer matches
Closes: 924567
Changes:
 kraken2 (2.0.7~beta-1) unstable; urgency=low
 .
   * Initial release (Closes: #924567)
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Files:
 9a4727ae9da1d124cc5ddf7e4a428318 1638580 debug optional kraken2-dbgsym_2.0.7~beta-1_armel.deb
 1b9bc7f1f2e471cc0b192b995f19203b 4459 science optional kraken2_2.0.7~beta-1_armel.buildinfo
 63f7773b36d8bed411195af8cb71a3d3 757632 science optional kraken2_2.0.7~beta-1_armel.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

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Binary: kraken2
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Version: 2.0.7~beta-1
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Thu, 30 May 2019 20:00:36 +0000
Build-Path: /<<PKGBUILDDIR>>
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Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="POSIX"
 SOURCE_DATE_EPOCH="1552569197"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


kraken2-dbgsym_2.0.7~beta-1_armel.deb
-------------------------------------

 new Debian package, version 2.0.
 size 1638580 bytes: control archive=808 bytes.
     545 bytes,    12 lines      control              
     615 bytes,     6 lines      md5sums              
 Package: kraken2-dbgsym
 Source: kraken2
 Version: 2.0.7~beta-1
 Auto-Built-Package: debug-symbols
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1718
 Depends: kraken2 (= 2.0.7~beta-1)
 Section: debug
 Priority: optional
 Description: debug symbols for kraken2
 Build-Ids: 3d15a8946fe58939af3a3f54d9b4d4dcd759d7b4 a2937e905bfcd5f4bb64181a659f866b3fd720b2 ad11e0dfdae826b1bd485181768937d4710ff432 fd4190de55413d4dc11c2026a15dc5f8ebe535f7 feae3733fbe21dee409b2893cc2aeedf5cdee767

drwxr-xr-x root/root         0 2019-03-14 13:13 ./
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/
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-rw-r--r-- root/root    183016 2019-03-14 13:13 ./usr/lib/debug/.dwz/arm-linux-gnueabi/kraken2.debug
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drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2-dbgsym -> kraken2


kraken2_2.0.7~beta-1_armel.deb
------------------------------

 new Debian package, version 2.0.
 size 757632 bytes: control archive=3024 bytes.
    2371 bytes,    41 lines      control              
    4066 bytes,    54 lines      md5sums              
 Package: kraken2
 Version: 2.0.7~beta-1
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1511
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), ncbi-blast+
 Section: science
 Priority: optional
 Homepage: https://www.ccb.jhu.edu/software/kraken2/
 Description: taxonomic classification system using exact k-mer matches
  Kraken 2 is the newest version of Kraken, a taxonomic classification
  system using exact k-mer matches to achieve high accuracy and fast
  classification speeds. This classifier matches each k-mer within a query
  sequence to the lowest common ancestor (LCA) of all genomes containing
  the given k-mer. The k-mer assignments inform the classification
  algorithm. [see: Kraken 1's Webpage for more details].
  .
  Kraken 2 provides significant improvements to Kraken 1, with faster
  database build times, smaller database sizes, and faster classification
  speeds. These improvements were achieved by the following updates to the
  Kraken classification program:
  .
   1. Storage of Minimizers: Instead of storing/querying entire k-mers,
      Kraken 2 stores minimizers (l-mers) of each k-mer. The length of
      each l-mer must be ≤ the k-mer length. Each k-mer is treated by
      Kraken 2 as if its LCA is the same as its minimizer's LCA.
   2. Introduction of Spaced Seeds: Kraken 2 also uses spaced seeds to
      store and query minimizers to improve classification accuracy.
   3. Database Structure: While Kraken 1 saved an indexed and sorted list
      of k-mer/LCA pairs, Kraken 2 uses a compact hash table. This hash
      table is a probabilistic data structure that allows for faster
      queries and lower memory requirements. However, this data structure
      does have a <1% chance of returning the incorrect LCA or returning
      an LCA for a non-inserted minimizer. Users can compensate for this
      possibility by using Kraken's confidence scoring thresholds.
   4. Protein Databases: Kraken 2 allows for databases built from amino
      acid sequences. When queried, Kraken 2 performs a six-frame
      translated search of the query sequences against the database.
   5. 16S Databases: Kraken 2 also provides support for databases not
      based on NCBI's taxonomy. Currently, these include the 16S
      databases: Greengenes, SILVA, and RDP.

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drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/bin/
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2 -> ../lib/kraken2/kraken2
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2-build -> ../lib/kraken2/kraken2-build
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2-inspect -> ../lib/kraken2/kraken2-inspect
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/kraken2/
-rwxr-xr-x root/root       959 2019-03-14 13:13 ./usr/lib/kraken2/16S_gg_installation.sh
-rwxr-xr-x root/root       956 2019-03-14 13:13 ./usr/lib/kraken2/16S_rdp_installation.sh
-rwxr-xr-x root/root      1101 2019-03-14 13:13 ./usr/lib/kraken2/16S_silva_installation.sh
-rwxr-xr-x root/root       947 2019-03-14 13:13 ./usr/lib/kraken2/add_to_library.sh
-rwxr-xr-x root/root     75400 2019-03-14 13:13 ./usr/lib/kraken2/build_db
-rwxr-xr-x root/root      2434 2019-03-14 13:13 ./usr/lib/kraken2/build_gg_taxonomy.pl
-rwxr-xr-x root/root      4297 2019-03-14 13:13 ./usr/lib/kraken2/build_kraken2_db.sh
-rwxr-xr-x root/root      2187 2019-03-14 13:13 ./usr/lib/kraken2/build_rdp_taxonomy.pl
-rwxr-xr-x root/root      1265 2019-03-14 13:13 ./usr/lib/kraken2/build_silva_taxonomy.pl
-rwxr-xr-x root/root    116360 2019-03-14 13:13 ./usr/lib/kraken2/classify
-rwxr-xr-x root/root       583 2019-03-14 13:13 ./usr/lib/kraken2/clean_db.sh
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-rwxr-xr-x root/root      4353 2019-03-14 13:13 ./usr/lib/kraken2/download_genomic_library.sh
-rwxr-xr-x root/root      1610 2019-03-14 13:13 ./usr/lib/kraken2/download_taxonomy.sh
-rwxr-xr-x root/root     67208 2019-03-14 13:13 ./usr/lib/kraken2/dump_table
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-rwxr-xr-x root/root      1213 2019-03-14 13:13 ./usr/lib/kraken2/mask_low_complexity.sh
-rwxr-xr-x root/root      4594 2019-03-14 13:13 ./usr/lib/kraken2/rsync_from_ncbi.pl
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-rwxr-xr-x root/root      1361 2019-03-14 13:13 ./usr/lib/kraken2/standard_installation.sh
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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 19600
Build-Time: 39
Distribution: unstable
Foreign Architectures: armel
Host Architecture: armel
Install-Time: 25
Job: kraken2_2.0.7~beta-1
Lintian: pass
Machine Architecture: amd64
Package: kraken2
Package-Time: 75
Source-Version: 2.0.7~beta-1
Space: 19600
Status: successful
Version: 2.0.7~beta-1
--------------------------------------------------------------------------------
Finished at 2019-05-30T20:00:36Z
Build needed 00:01:15, 19600k disk space