sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| kraken2 2.0.7~beta-1 (armhf)                 Tue, 28 May 2019 16:57:00 +0000 |
+==============================================================================+

Package: kraken2
Version: 2.0.7~beta-1
Source Version: 2.0.7~beta-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-e5ff2357-dffb-48c6-b9ae-5678443a7ed5' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-28-0820.06.pdiff [3191 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-28-1419.52.pdiff [2799 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-05-28-1419.52.pdiff [2799 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-28-0820.06.pdiff [828 B]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-28-1419.52.pdiff [7360 B]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-05-28-1419.52.pdiff [7360 B]
Get:8 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8083 kB]
Fetched 8400 kB in 2s (3929 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kraken2.git
Please use:
git clone https://salsa.debian.org/med-team/kraken2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 411 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (dsc) [1988 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (tar) [71.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.7~beta-1 (diff) [337 kB]
Fetched 411 kB in 0s (8598 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kraken2-H9kpNw/kraken2-2.0.7~beta' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kraken2-H9kpNw' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install crossbuild-essential                                                 |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64
Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-zVLIaM/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release [957 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Sources [363 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Packages [453 B]
Fetched 1773 B in 0s (90.0 kB/s)
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross
  file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base
  gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross
  libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl
  libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl
  libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross
  libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl
  libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross
  libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev-armhf-cross sensible-utils ucf
Suggested packages:
  binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc
  libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross
  libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross
  libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross
  libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross
  libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex
  bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl
Recommended packages:
  libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
The following NEW packages will be installed:
  binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross
  file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base
  gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross
  libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl
  libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl
  libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross
  libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl
  libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross
  libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf
  sensible-utils ucf
0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.8 MB of archives.
After this operation, 152 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.31.1-16 [2834 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-7cross1 [191 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [6545 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-10cross2 [1172 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:8.3.0-7cross1 [37.1 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 8.3.0-7cross1 [63.2 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 8.3.0-7cross1 [6564 B]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 8.3.0-7cross1 [301 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 8.3.0-7cross1 [329 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 8.3.0-7cross1 [103 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-7cross1 [612 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [6973 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.28-2cross2 [1228 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-10cross2 [2149 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-7cross1 [1556 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-7cross1 [7126 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 41.8 MB in 1s (61.1 MB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 11942 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ...
Unpacking liblocale-gettext-perl (1.07-3+b4) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ...
Unpacking sensible-utils (0.0.12) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ...
Unpacking libmagic-mgc (1:5.35-4) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.35-4) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ...
Unpacking file (1:5.35-4) ...
Selecting previously unselected package ucf.
Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038+nmu1) ...
Selecting previously unselected package binutils-arm-linux-gnueabihf.
Preparing to unpack .../06-binutils-arm-linux-gnueabihf_2.31.1-16_amd64.deb ...
Unpacking binutils-arm-linux-gnueabihf (2.31.1-16) ...
Selecting previously unselected package gcc-8-arm-linux-gnueabihf-base:amd64.
Preparing to unpack .../07-gcc-8-arm-linux-gnueabihf-base_8.3.0-7cross1_amd64.deb ...
Unpacking gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-7cross1) ...
Selecting previously unselected package cpp-8-arm-linux-gnueabihf.
Preparing to unpack .../08-cpp-8-arm-linux-gnueabihf_8.3.0-7cross1_amd64.deb ...
Unpacking cpp-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Selecting previously unselected package cpp-arm-linux-gnueabihf.
Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ...
Unpacking cpp-arm-linux-gnueabihf (4:8.3.0-1) ...
Selecting previously unselected package cross-config.
Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ...
Unpacking cross-config (2.6.15-3) ...
Selecting previously unselected package gcc-8-cross-base.
Preparing to unpack .../11-gcc-8-cross-base_8.3.0-7cross1_all.deb ...
Unpacking gcc-8-cross-base (8.3.0-7cross1) ...
Selecting previously unselected package libc6-armhf-cross.
Preparing to unpack .../12-libc6-armhf-cross_2.28-10cross2_all.deb ...
Unpacking libc6-armhf-cross (2.28-10cross2) ...
Selecting previously unselected package libgcc1-armhf-cross.
Preparing to unpack .../13-libgcc1-armhf-cross_1%3a8.3.0-7cross1_all.deb ...
Unpacking libgcc1-armhf-cross (1:8.3.0-7cross1) ...
Selecting previously unselected package libgomp1-armhf-cross.
Preparing to unpack .../14-libgomp1-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libgomp1-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package libatomic1-armhf-cross.
Preparing to unpack .../15-libatomic1-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libatomic1-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package libstdc++6-armhf-cross.
Preparing to unpack .../16-libstdc++6-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libstdc++6-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package libasan5-armhf-cross.
Preparing to unpack .../17-libasan5-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libasan5-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package libubsan1-armhf-cross.
Preparing to unpack .../18-libubsan1-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libubsan1-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package libgcc-8-dev-armhf-cross.
Preparing to unpack .../19-libgcc-8-dev-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libgcc-8-dev-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package gcc-8-arm-linux-gnueabihf.
Preparing to unpack .../20-gcc-8-arm-linux-gnueabihf_8.3.0-7cross1_amd64.deb ...
Unpacking gcc-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Selecting previously unselected package gcc-arm-linux-gnueabihf.
Preparing to unpack .../21-gcc-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ...
Unpacking gcc-arm-linux-gnueabihf (4:8.3.0-1) ...
Selecting previously unselected package linux-libc-dev-armhf-cross.
Preparing to unpack .../22-linux-libc-dev-armhf-cross_4.19.28-2cross2_all.deb ...
Unpacking linux-libc-dev-armhf-cross (4.19.28-2cross2) ...
Selecting previously unselected package libc6-dev-armhf-cross.
Preparing to unpack .../23-libc6-dev-armhf-cross_2.28-10cross2_all.deb ...
Unpacking libc6-dev-armhf-cross (2.28-10cross2) ...
Selecting previously unselected package libstdc++-8-dev-armhf-cross.
Preparing to unpack .../24-libstdc++-8-dev-armhf-cross_8.3.0-7cross1_all.deb ...
Unpacking libstdc++-8-dev-armhf-cross (8.3.0-7cross1) ...
Selecting previously unselected package g++-8-arm-linux-gnueabihf.
Preparing to unpack .../25-g++-8-arm-linux-gnueabihf_8.3.0-7cross1_amd64.deb ...
Unpacking g++-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Selecting previously unselected package g++-arm-linux-gnueabihf.
Preparing to unpack .../26-g++-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ...
Unpacking g++-arm-linux-gnueabihf (4:8.3.0-1) ...
Selecting previously unselected package libconfig-inifiles-perl.
Preparing to unpack .../27-libconfig-inifiles-perl_3.000001-1_all.deb ...
Unpacking libconfig-inifiles-perl (3.000001-1) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../28-libio-string-perl_1.08-3_all.deb ...
Unpacking libio-string-perl (1.08-3) ...
Selecting previously unselected package libicu63:amd64.
Preparing to unpack .../29-libicu63_63.1-6_amd64.deb ...
Unpacking libicu63:amd64 (63.1-6) ...
Selecting previously unselected package libxml2:amd64.
Preparing to unpack .../30-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ...
Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../31-libxml-namespacesupport-perl_1.12-1_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-1) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../32-libxml-sax-base-perl_1.09-1_all.deb ...
Unpacking libxml-sax-base-perl (1.09-1) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../33-libxml-sax-perl_1.00+dfsg-1_all.deb ...
Unpacking libxml-sax-perl (1.00+dfsg-1) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../34-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ...
Unpacking libxml-libxml-perl (2.0134+dfsg-1) ...
Selecting previously unselected package libxml-simple-perl.
Preparing to unpack .../35-libxml-simple-perl_2.25-1_all.deb ...
Unpacking libxml-simple-perl (2.25-1) ...
Selecting previously unselected package libyaml-perl.
Preparing to unpack .../36-libyaml-perl_1.27-1_all.deb ...
Unpacking libyaml-perl (1.27-1) ...
Selecting previously unselected package libconfig-auto-perl.
Preparing to unpack .../37-libconfig-auto-perl_0.44-1_all.deb ...
Unpacking libconfig-auto-perl (0.44-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../38-libfile-which-perl_1.23-1_all.deb ...
Unpacking libfile-which-perl (1.23-1) ...
Selecting previously unselected package libfile-homedir-perl.
Preparing to unpack .../39-libfile-homedir-perl_1.004-1_all.deb ...
Unpacking libfile-homedir-perl (1.004-1) ...
Selecting previously unselected package libdebian-dpkgcross-perl.
Preparing to unpack .../40-libdebian-dpkgcross-perl_2.6.15-3_all.deb ...
Unpacking libdebian-dpkgcross-perl (2.6.15-3) ...
Selecting previously unselected package dpkg-cross.
Preparing to unpack .../41-dpkg-cross_2.6.15-3_all.deb ...
Unpacking dpkg-cross (2.6.15-3) ...
Selecting previously unselected package crossbuild-essential-armhf.
Preparing to unpack .../42-crossbuild-essential-armhf_12.6_all.deb ...
Unpacking crossbuild-essential-armhf (12.6) ...
Selecting previously unselected package sbuild-build-depends-core-dummy:armhf.
Preparing to unpack .../43-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ...
Setting up libconfig-inifiles-perl (3.000001-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libc6-armhf-cross (2.28-10cross2) ...
Setting up libmagic-mgc (1:5.35-4) ...
Setting up gcc-8-cross-base (8.3.0-7cross1) ...
Setting up libmagic1:amd64 (1:5.35-4) ...
Setting up libxml-namespacesupport-perl (1.12-1) ...
Setting up file (1:5.35-4) ...
Setting up libatomic1-armhf-cross (8.3.0-7cross1) ...
Setting up libyaml-perl (1.27-1) ...
Setting up libicu63:amd64 (63.1-6) ...
Setting up libxml-sax-base-perl (1.09-1) ...
Setting up libio-string-perl (1.08-3) ...
Setting up cross-config (2.6.15-3) ...
Setting up libgcc1-armhf-cross (1:8.3.0-7cross1) ...
Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-7cross1) ...
Setting up linux-libc-dev-armhf-cross (4.19.28-2cross2) ...
Setting up sensible-utils (0.0.12) ...
Setting up libfile-homedir-perl (1.004-1) ...
Setting up binutils-arm-linux-gnueabihf (2.31.1-16) ...
Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ...
Setting up liblocale-gettext-perl (1.07-3+b4) ...
Setting up cpp-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Setting up libgomp1-armhf-cross (8.3.0-7cross1) ...
Setting up libc6-dev-armhf-cross (2.28-10cross2) ...
Setting up libstdc++6-armhf-cross (8.3.0-7cross1) ...
Setting up libubsan1-armhf-cross (8.3.0-7cross1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ...
Setting up libxml-sax-perl (1.00+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libasan5-armhf-cross (8.3.0-7cross1) ...
Setting up libgcc-8-dev-armhf-cross (8.3.0-7cross1) ...
Setting up libxml-libxml-perl (2.0134+dfsg-1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libstdc++-8-dev-armhf-cross (8.3.0-7cross1) ...
Setting up gcc-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ...
Setting up g++-8-arm-linux-gnueabihf (8.3.0-7cross1) ...
Setting up libxml-simple-perl (2.25-1) ...
Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ...
Setting up libconfig-auto-perl (0.44-1) ...
Setting up libdebian-dpkgcross-perl (2.6.15-3) ...
Setting up dpkg-cross (2.6.15-3) ...
Setting up crossbuild-essential-armhf (12.6) ...
Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

Setup apt archive
-----------------

dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<<BUILDDIR>>/resolver-zVLIaM/apt_archive/sbuild-build-depends-essential-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Sources [485 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Packages [571 B]
Fetched 2019 B in 0s (96.2 kB/s)
Reading package lists...
Reading package lists...

Install essential build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-essential-dummy:armhf
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 840 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 840 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf.
(Reading database ... 14991 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ...
Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~)
Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 12~)
dpkg-deb: building package 'sbuild-build-depends-kraken2-dummy' in '/<<BUILDDIR>>/resolver-zVLIaM/apt_archive/sbuild-build-depends-kraken2-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kraken2-dummy
dpkg-scanpackages: info: Wrote 3 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Sources [637 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Packages [716 B]
Fetched 2316 B in 0s (122 kB/s)
Reading package lists...
Reading package lists...

Install kraken2 build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf
  libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf
  libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0
  linux-libc-dev:armhf m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf
  libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf
  libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1
  libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf
  libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2
  libstdc++-8-dev:armhf libstdc++6:armhf libtool libubsan1:armhf libuchardet0
  linux-libc-dev:armhf m4 man-db po-debconf
  sbuild-build-depends-kraken2-dummy:armhf
0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded.
Need to get 18.6 MB of archives.
After this operation, 79.2 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ sbuild-build-depends-kraken2-dummy 0.invalid.0 [876 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-7 [191 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:8.3.0-7 [37.1 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-10 [2390 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 8.3.0-7 [339 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 8.3.0-7 [336 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 8.3.0-7 [6740 B]
Get:35 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.37-3 [1166 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-10 [2149 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 8.3.0-7 [64.8 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 8.3.0-7 [103 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-7 [611 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-7 [1585 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 18.6 MB in 0s (52.0 MB/s)
Selecting previously unselected package libbsd0:amd64.
(Reading database ... 14991 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ...
Unpacking libbsd0:amd64 (0.9.1-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ...
Unpacking groff-base (1.22.4-3) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ...
Unpacking man-db (2.8.5-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:amd64.
Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ...
Unpacking libsigsegv2:amd64 (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../09-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libtool.
Preparing to unpack .../13-libtool_2.4.6-10_all.deb ...
Unpacking libtool (2.4.6-10) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../14-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.1.2-1) ...
Selecting previously unselected package libelf1:amd64.
Preparing to unpack .../18-libelf1_0.176-1_amd64.deb ...
Unpacking libelf1:amd64 (0.176-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../19-dwz_0.12-3_amd64.deb ...
Unpacking dwz (0.12-3) ...
Selecting previously unselected package libglib2.0-0:amd64.
Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ...
Unpacking libglib2.0-0:amd64 (2.58.3-1) ...
Selecting previously unselected package libcroco3:amd64.
Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ...
Unpacking libcroco3:amd64 (0.6.12-3) ...
Selecting previously unselected package libncurses6:amd64.
Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ...
Unpacking libncurses6:amd64 (6.1+20181013-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../25-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../26-debhelper_12.1.1_all.deb ...
Unpacking debhelper (12.1.1) ...
Selecting previously unselected package gcc-8-base:armhf.
Preparing to unpack .../27-gcc-8-base_8.3.0-7_armhf.deb ...
Unpacking gcc-8-base:armhf (8.3.0-7) ...
Selecting previously unselected package libgcc1:armhf.
Preparing to unpack .../28-libgcc1_1%3a8.3.0-7_armhf.deb ...
Unpacking libgcc1:armhf (1:8.3.0-7) ...
Selecting previously unselected package libc6:armhf.
Preparing to unpack .../29-libc6_2.28-10_armhf.deb ...
Unpacking libc6:armhf (2.28-10) ...
Selecting previously unselected package libstdc++6:armhf.
Preparing to unpack .../30-libstdc++6_8.3.0-7_armhf.deb ...
Unpacking libstdc++6:armhf (8.3.0-7) ...
Selecting previously unselected package libasan5:armhf.
Preparing to unpack .../31-libasan5_8.3.0-7_armhf.deb ...
Unpacking libasan5:armhf (8.3.0-7) ...
Selecting previously unselected package libatomic1:armhf.
Preparing to unpack .../32-libatomic1_8.3.0-7_armhf.deb ...
Unpacking libatomic1:armhf (8.3.0-7) ...
Selecting previously unselected package linux-libc-dev:armhf.
Preparing to unpack .../33-linux-libc-dev_4.19.37-3_armhf.deb ...
Unpacking linux-libc-dev:armhf (4.19.37-3) ...
Selecting previously unselected package libc6-dev:armhf.
Preparing to unpack .../34-libc6-dev_2.28-10_armhf.deb ...
Unpacking libc6-dev:armhf (2.28-10) ...
Selecting previously unselected package libgomp1:armhf.
Preparing to unpack .../35-libgomp1_8.3.0-7_armhf.deb ...
Unpacking libgomp1:armhf (8.3.0-7) ...
Selecting previously unselected package libubsan1:armhf.
Preparing to unpack .../36-libubsan1_8.3.0-7_armhf.deb ...
Unpacking libubsan1:armhf (8.3.0-7) ...
Selecting previously unselected package libgcc-8-dev:armhf.
Preparing to unpack .../37-libgcc-8-dev_8.3.0-7_armhf.deb ...
Unpacking libgcc-8-dev:armhf (8.3.0-7) ...
Selecting previously unselected package libstdc++-8-dev:armhf.
Preparing to unpack .../38-libstdc++-8-dev_8.3.0-7_armhf.deb ...
Unpacking libstdc++-8-dev:armhf (8.3.0-7) ...
Selecting previously unselected package sbuild-build-depends-kraken2-dummy:armhf.
Preparing to unpack .../39-sbuild-build-depends-kraken2-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-kraken2-dummy:armhf (0.invalid.0) ...
Setting up libpipeline1:amd64 (1.5.1-2) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libglib2.0-0:amd64 (2.58.3-1) ...
No schema files found: doing nothing.
Setting up linux-libc-dev:armhf (4.19.37-3) ...
Setting up gettext-base (0.19.8.1-9) ...
Setting up autotools-dev (20180224.1) ...
Setting up libncurses6:amd64 (6.1+20181013-2) ...
Setting up libsigsegv2:amd64 (2.12-2) ...
Setting up gcc-8-base:armhf (8.3.0-7) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libcroco3:amd64 (0.6.12-3) ...
Setting up libuchardet0:amd64 (0.0.6-3) ...
Setting up libbsd0:amd64 (0.9.1-2) ...
Setting up libelf1:amd64 (0.176-1) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libtool (2.4.6-10) ...
Setting up m4 (1.4.18-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up bsdmainutils (11.1.2+b1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libc6:armhf (2.28-10) ...
Setting up libc6-dev:armhf (2.28-10) ...
Setting up libgcc1:armhf (1:8.3.0-7) ...
Setting up libgomp1:armhf (8.3.0-7) ...
Setting up dh-autoreconf (19) ...
Setting up libatomic1:armhf (8.3.0-7) ...
Setting up libstdc++6:armhf (8.3.0-7) ...
Setting up debhelper (12.1.1) ...
Setting up libasan5:armhf (8.3.0-7) ...
Setting up libubsan1:armhf (8.3.0-7) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up libgcc-8-dev:armhf (8.3.0-7) ...
Setting up libstdc++-8-dev:armhf (8.3.0-7) ...
Setting up sbuild-build-depends-kraken2-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armhf-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armhf-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3
Package versions: adduser_3.118 apt_1.8.1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-arm-linux-gnueabihf_2.31.1-16 binutils-common_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-arm-linux-gnueabihf_8.3.0-7cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-3 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.1-3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-arm-linux-gnueabihf_8.3.0-7cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-arm-linux-gnueabihf_8.3.0-7cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-7cross1 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.1 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libasan5-armhf-cross_8.3.0-7cross1 libatomic1_8.3.0-7 libatomic1-armhf-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armhf-cross_2.28-10cross2 libc6-dev_2.28-10 libc6-dev-armhf-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.1-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.6 libelf1_0.176-1 libext2fs2_1.45.1-3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-armhf-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-armhf-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-3 libgomp1_8.3.0-7 libgomp1-armhf-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.1-3 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-armhf-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-armhf-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libubsan1-armhf-cross_8.3.0-7cross1 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-armhf-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-kraken2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Mar 14 13:19:30 2019 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kraken2_2.0.7~beta-1.dsc
dpkg-source: info: extracting kraken2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking kraken2_2.0.7~beta.orig.tar.gz
dpkg-source: info: unpacking kraken2_2.0.7~beta-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_install.patch
dpkg-source: info: applying hardening+debug_options.patch
dpkg-source: info: applying fix_reading_fasta.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-e5ff2357-dffb-48c6-b9ae-5678443a7ed5
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package kraken2
dpkg-buildpackage: info: source version 2.0.7~beta-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean  --sourcedirectory=src
   dh_auto_clean -O--sourcedirectory=src
	cd src && make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_autoreconf_clean -O--sourcedirectory=src
   dh_clean -O--sourcedirectory=src
 debian/rules build-arch
dh build-arch  --sourcedirectory=src
   dh_update_autotools_config -a -O--sourcedirectory=src
   dh_autoreconf -a -O--sourcedirectory=src
   dh_auto_configure -a -O--sourcedirectory=src
   dh_auto_build -a -O--sourcedirectory=src
	cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seqreader.o seqreader.cc
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmscanner.o mmscanner.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kraken2::MinimizerData&}; _Tp = kraken2::MinimizerData; _Alloc = std::allocator<kraken2::MinimizerData>]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<kraken2::MinimizerData>::iterator' {aka '__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In member function 'uint64_t* kraken2::MinimizerScanner::NextMinimizer(bool*)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o omp_hack.o omp_hack.cc
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o utilities.o utilities.cc
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  estimate_capacity.cc seqreader.o mmscanner.o omp_hack.o utilities.o   -o estimate_capacity
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmap_file.o mmap_file.cc
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o compact_hash.o compact_hash.cc
compact_hash.cc: In constructor 'kraken2::CompactHashTable::CompactHashTable(size_t, size_t, size_t)':
compact_hash.cc:32:27: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
   } catch (std::bad_alloc ex) {
                           ^~
compact_hash.cc: In member function 'void kraken2::CompactHashTable::LoadTable(const char*, bool)':
compact_hash.cc:86:29: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
     } catch (std::bad_alloc ex) {
                             ^~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o taxonomy.o taxonomy.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::set<long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void kraken2::NCBITaxonomy::MarkNode(uint64_t)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In constructor 'kraken2::NCBITaxonomy::NCBITaxonomy(std::__cxx11::string, std::__cxx11::string)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In member function 'void kraken2::NCBITaxonomy::ConvertToKrakenTaxonomy(const char*)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  build_db.cc mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o   -o build_db
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:60,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/map:61,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In function 'void ReadIDToTaxonMap(std::map<std::__cxx11::basic_string<char>, long long unsigned int>&, std::__cxx11::string&)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h: In function '_Z16ProcessSequencesR7OptionsRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEySt4lessIS7_ESaISt4pairIKS7_yEEERN7kraken216CompactHashTableERNSG_8TaxonomyE._omp_fn.0':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >'} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o reports.o reports.cc
In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h: In function 'void kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o aa_translate.o aa_translate.cc
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  classify.cc reports.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o   -o classify
classify.cc: In function 'void ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)':
classify.cc:313:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'long long unsigned int' [-Wformat=]
           sprintf(buffer, " kraken:taxid|%lu", call);
                           ^~~~~~~~~~~~~~~~~~~  ~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabihf/include/c++/8/algorithm:62,
                 from kraken2_headers.h:1,
                 from classify.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_val<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
     __push_heap(_RandomAccessIterator __first,
     ^~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function 'taxid_t ClassifySequence(kraken2::Sequence&, kraken2::Sequence&, std::ostringstream&, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, kraken2::MinimizerScanner&, std::vector<long long unsigned int>&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
 }
 ^
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
classify.cc:602:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' {aka '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:69,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OutputData&}; _Tp = OutputData; _Alloc = std::allocator<OutputData>]':
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<OutputData>::iterator' {aka '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >'} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<OutputData>::iterator' {aka '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >'} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabihf/include/c++/8/vector:64,
                 from /usr/arm-linux-gnueabihf/include/c++/8/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h: In function '_Z12ProcessFilesPKcS0_PN7kraken213KeyValueStoreERNS1_8TaxonomyER12IndexOptionsR7OptionsR19ClassificationStatsR16OutputStreamDataRSt13unordered_mapIyySt4hashIyESt8equal_toIyESaISt4pairIKyyEEE._omp_fn.0':
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabihf/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  dump_table.cc mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o   -o dump_table
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  lookup_accession_numbers.cc mmap_file.o omp_hack.o utilities.o   -o lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_auto_test -a -O--sourcedirectory=src
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch  --sourcedirectory=src
   dh_testroot -a -O--sourcedirectory=src
   dh_prep -a -O--sourcedirectory=src
   dh_installdirs -a -O--sourcedirectory=src
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- KRAKEN2_DIR=/<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
	cd src && make -j1 install DESTDIR=/<<BUILDDIR>>/kraken2-2.0.7\~beta/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/<<BUILDDIR>>/kraken2-2.0.7\~beta/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
./install_kraken2.sh /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'

Kraken 2 installation complete.

To make things easier for you, you may want to copy/symlink the following
files into a directory in your PATH:
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-build
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-inspect
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--sourcedirectory=src
   dh_installchangelogs -a -O--sourcedirectory=src
   dh_installman -a -O--sourcedirectory=src
   dh_installinit -a -O--sourcedirectory=src
   dh_installsystemduser -a -O--sourcedirectory=src
   dh_perl -a -O--sourcedirectory=src
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
for file in /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken* ; do \
    if ! echo ${file} | grep -q '\.pm$' ; then \
	ln -s ../lib/kraken2/`basename ${file}` /<<PKGBUILDDIR>>/debian/kraken2/usr/bin/`basename ${file}` ; \
    fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a -O--sourcedirectory=src
   dh_compress -a -O--sourcedirectory=src
   dh_fixperms -a -O--sourcedirectory=src
   dh_missing -a -O--sourcedirectory=src
   dh_dwz -a -O--sourcedirectory=src
   dh_strip -a -O--sourcedirectory=src
   dh_makeshlibs -a -O--sourcedirectory=src
   dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/dump_table contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/classify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/build_db contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/estimate_capacity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/lookup_accession_numbers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a -O--sourcedirectory=src
   dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a -O--sourcedirectory=src
   dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'kraken2' in '../kraken2_2.0.7~beta-1_armhf.deb'.
dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.0.7~beta-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../kraken2_2.0.7~beta-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-05-28T16:58:15Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<BUILDDIR>>/resolver-zVLIaM/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-kraken2-dummy sbuild-build-depends-lintian-dummy
dpkg-scanpackages: info: Wrote 4 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Sources [755 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ Packages [829 B]
Fetched 2547 B in 0s (221 kB/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
  libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
  libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
  libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
  libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
  libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
  libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common t1utils
Suggested packages:
  libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl
  binutils-multiarch libtext-template-perl readline-doc
Recommended packages:
  gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
  libsereal-perl libtest-fatal-perl libtest-refcount-perl
  libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl
  libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl
  libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl
  libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl
  libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl
  libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl
  libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl
  libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common
  sbuild-build-depends-lintian-dummy:armhf t1utils
0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 7768 kB of archives.
After this operation, 20.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zVLIaM/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-2 [1530 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.15.0 [1181 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 7768 kB in 0s (36.8 MB/s)
Selecting previously unselected package netbase.
(Reading database ... 17703 files and directories currently installed.)
Preparing to unpack .../00-netbase_5.6_all.deb ...
Unpacking netbase (5.6) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../01-readline-common_7.0-5_all.deb ...
Unpacking readline-common (7.0-5) ...
Selecting previously unselected package diffstat.
Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ...
Unpacking diffstat (1.62-1) ...
Selecting previously unselected package libassuan0:amd64.
Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ...
Unpacking libassuan0:amd64 (2.5.2-1) ...
Selecting previously unselected package libreadline7:amd64.
Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ...
Unpacking libreadline7:amd64 (7.0-5) ...
Selecting previously unselected package gpgconf.
Preparing to unpack .../05-gpgconf_2.2.13-2_amd64.deb ...
Unpacking gpgconf (2.2.13-2) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../06-libsqlite3-0_3.27.2-2_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.27.2-2) ...
Selecting previously unselected package gpg.
Preparing to unpack .../07-gpg_2.2.13-2_amd64.deb ...
Unpacking gpg (2.2.13-2) ...
Selecting previously unselected package libapt-pkg-perl.
Preparing to unpack .../08-libapt-pkg-perl_0.1.34+b1_amd64.deb ...
Unpacking libapt-pkg-perl (0.1.34+b1) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../09-libcapture-tiny-perl_0.48-1_all.deb ...
Unpacking libcapture-tiny-perl (0.48-1) ...
Selecting previously unselected package libhtml-tagset-perl.
Preparing to unpack .../10-libhtml-tagset-perl_3.20-3_all.deb ...
Unpacking libhtml-tagset-perl (3.20-3) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../11-liburi-perl_1.76-1_all.deb ...
Unpacking liburi-perl (1.76-1) ...
Selecting previously unselected package libhtml-parser-perl.
Preparing to unpack .../12-libhtml-parser-perl_3.72-3+b3_amd64.deb ...
Unpacking libhtml-parser-perl (3.72-3+b3) ...
Selecting previously unselected package libcgi-pm-perl.
Preparing to unpack .../13-libcgi-pm-perl_4.40-1_all.deb ...
Unpacking libcgi-pm-perl (4.40-1) ...
Selecting previously unselected package libsub-name-perl.
Preparing to unpack .../14-libsub-name-perl_0.21-1+b3_amd64.deb ...
Unpacking libsub-name-perl (0.21-1+b3) ...
Selecting previously unselected package libclass-accessor-perl.
Preparing to unpack .../15-libclass-accessor-perl_0.51-1_all.deb ...
Unpacking libclass-accessor-perl (0.51-1) ...
Selecting previously unselected package libclone-perl.
Preparing to unpack .../16-libclone-perl_0.41-1+b1_amd64.deb ...
Unpacking libclone-perl (0.41-1+b1) ...
Selecting previously unselected package libdigest-hmac-perl.
Preparing to unpack .../17-libdigest-hmac-perl_1.03+dfsg-2_all.deb ...
Unpacking libdigest-hmac-perl (1.03+dfsg-2) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package libssl1.1:amd64.
Preparing to unpack .../19-libssl1.1_1.1.1b-2_amd64.deb ...
Unpacking libssl1.1:amd64 (1.1.1b-2) ...
Selecting previously unselected package perl-openssl-defaults:amd64.
Preparing to unpack .../20-perl-openssl-defaults_3_amd64.deb ...
Unpacking perl-openssl-defaults:amd64 (3) ...
Selecting previously unselected package libnet-ssleay-perl.
Preparing to unpack .../21-libnet-ssleay-perl_1.85-2+b1_amd64.deb ...
Unpacking libnet-ssleay-perl (1.85-2+b1) ...
Selecting previously unselected package libio-socket-ssl-perl.
Preparing to unpack .../22-libio-socket-ssl-perl_2.060-3_all.deb ...
Unpacking libio-socket-ssl-perl (2.060-3) ...
Selecting previously unselected package libnet-smtp-ssl-perl.
Preparing to unpack .../23-libnet-smtp-ssl-perl_1.04-1_all.deb ...
Unpacking libnet-smtp-ssl-perl (1.04-1) ...
Selecting previously unselected package libmailtools-perl.
Preparing to unpack .../24-libmailtools-perl_2.18-1_all.deb ...
Unpacking libmailtools-perl (2.18-1) ...
Selecting previously unselected package libnet-ip-perl.
Preparing to unpack .../25-libnet-ip-perl_1.26-2_all.deb ...
Unpacking libnet-ip-perl (1.26-2) ...
Selecting previously unselected package libnet-dns-perl.
Preparing to unpack .../26-libnet-dns-perl_1.19-1_all.deb ...
Unpacking libnet-dns-perl (1.19-1) ...
Selecting previously unselected package libnet-domain-tld-perl.
Preparing to unpack .../27-libnet-domain-tld-perl_1.75-1_all.deb ...
Unpacking libnet-domain-tld-perl (1.75-1) ...
Selecting previously unselected package libemail-valid-perl.
Preparing to unpack .../28-libemail-valid-perl_1.202-1_all.deb ...
Unpacking libemail-valid-perl (1.202-1) ...
Selecting previously unselected package libexporter-tiny-perl.
Preparing to unpack .../29-libexporter-tiny-perl_1.002001-1_all.deb ...
Unpacking libexporter-tiny-perl (1.002001-1) ...
Selecting previously unselected package libipc-system-simple-perl.
Preparing to unpack .../30-libipc-system-simple-perl_1.25-4_all.deb ...
Unpacking libipc-system-simple-perl (1.25-4) ...
Selecting previously unselected package libfile-basedir-perl.
Preparing to unpack .../31-libfile-basedir-perl_0.08-1_all.deb ...
Unpacking libfile-basedir-perl (0.08-1) ...
Selecting previously unselected package libfuture-perl.
Preparing to unpack .../32-libfuture-perl_0.39-1_all.deb ...
Unpacking libfuture-perl (0.39-1) ...
Selecting previously unselected package libstruct-dumb-perl.
Preparing to unpack .../33-libstruct-dumb-perl_0.09-1_all.deb ...
Unpacking libstruct-dumb-perl (0.09-1) ...
Selecting previously unselected package libio-async-perl.
Preparing to unpack .../34-libio-async-perl_0.72-1_all.deb ...
Unpacking libio-async-perl (0.72-1) ...
Selecting previously unselected package libio-pty-perl.
Preparing to unpack .../35-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ...
Unpacking libio-pty-perl (1:1.08-1.1+b5) ...
Selecting previously unselected package libipc-run-perl.
Preparing to unpack .../36-libipc-run-perl_20180523.0-1_all.deb ...
Unpacking libipc-run-perl (20180523.0-1) ...
Selecting previously unselected package liblist-moreutils-perl.
Preparing to unpack .../37-liblist-moreutils-perl_0.416-1+b4_amd64.deb ...
Unpacking liblist-moreutils-perl (0.416-1+b4) ...
Selecting previously unselected package libparse-debianchangelog-perl.
Preparing to unpack .../38-libparse-debianchangelog-perl_1.2.0-13_all.deb ...
Unpacking libparse-debianchangelog-perl (1.2.0-13) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../39-libpath-tiny-perl_0.108-1_all.deb ...
Unpacking libpath-tiny-perl (0.108-1) ...
Selecting previously unselected package libtext-levenshtein-perl.
Preparing to unpack .../40-libtext-levenshtein-perl_0.13-1_all.deb ...
Unpacking libtext-levenshtein-perl (0.13-1) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../41-libtry-tiny-perl_0.30-1_all.deb ...
Unpacking libtry-tiny-perl (0.30-1) ...
Selecting previously unselected package libyaml-0-2:amd64.
Preparing to unpack .../42-libyaml-0-2_0.2.1-1_amd64.deb ...
Unpacking libyaml-0-2:amd64 (0.2.1-1) ...
Selecting previously unselected package libyaml-libyaml-perl.
Preparing to unpack .../43-libyaml-libyaml-perl_0.76+repack-1_amd64.deb ...
Unpacking libyaml-libyaml-perl (0.76+repack-1) ...
Selecting previously unselected package patchutils.
Preparing to unpack .../44-patchutils_0.3.4-2_amd64.deb ...
Unpacking patchutils (0.3.4-2) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../45-t1utils_1.41-3_amd64.deb ...
Unpacking t1utils (1.41-3) ...
Selecting previously unselected package lintian.
Preparing to unpack .../46-lintian_2.15.0_all.deb ...
Unpacking lintian (2.15.0) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf.
Preparing to unpack .../47-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Setting up libapt-pkg-perl (0.1.34+b1) ...
Setting up libstruct-dumb-perl (0.09-1) ...
Setting up libio-pty-perl (1:1.08-1.1+b5) ...
Setting up libclone-perl (0.41-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.1-1) ...
Setting up libssl1.1:amd64 (1.1.1b-2) ...
Setting up libhtml-tagset-perl (3.20-3) ...
Setting up libsqlite3-0:amd64 (3.27.2-2) ...
Setting up libfuture-perl (0.39-1) ...
Setting up libyaml-libyaml-perl (0.76+repack-1) ...
Setting up libtry-tiny-perl (0.30-1) ...
Setting up perl-openssl-defaults:amd64 (3) ...
Setting up libtext-levenshtein-perl (0.13-1) ...
Setting up libassuan0:amd64 (2.5.2-1) ...
Setting up libio-async-perl (0.72-1) ...
Setting up patchutils (0.3.4-2) ...
Setting up libdigest-hmac-perl (1.03+dfsg-2) ...
Setting up libipc-system-simple-perl (1.25-4) ...
Setting up libnet-domain-tld-perl (1.75-1) ...
Setting up t1utils (1.41-3) ...
Setting up diffstat (1.62-1) ...
Setting up libipc-run-perl (20180523.0-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsub-name-perl (0.21-1+b3) ...
Setting up libpath-tiny-perl (0.108-1) ...
Setting up netbase (5.6) ...
Setting up libexporter-tiny-perl (1.002001-1) ...
Setting up libclass-accessor-perl (0.51-1) ...
Setting up libnet-ip-perl (1.26-2) ...
Setting up readline-common (7.0-5) ...
Setting up liburi-perl (1.76-1) ...
Setting up libreadline7:amd64 (7.0-5) ...
Setting up libnet-ssleay-perl (1.85-2+b1) ...
Setting up libfile-basedir-perl (0.08-1) ...
Setting up liblist-moreutils-perl (0.416-1+b4) ...
Setting up libnet-dns-perl (1.19-1) ...
Setting up libhtml-parser-perl (3.72-3+b3) ...
Setting up gpgconf (2.2.13-2) ...
Setting up libio-socket-ssl-perl (2.060-3) ...
Setting up gpg (2.2.13-2) ...
Setting up libcgi-pm-perl (4.40-1) ...
Setting up libnet-smtp-ssl-perl (1.04-1) ...
Setting up libmailtools-perl (2.18-1) ...
Setting up libparse-debianchangelog-perl (1.2.0-13) ...
Setting up libemail-valid-perl (1.202-1) ...
Setting up lintian (2.15.0) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.28-10) ...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


kraken2_2.0.7~beta-1_armhf.changes:
-----------------------------------

Format: 1.8
Date: Thu, 14 Mar 2019 14:13:17 +0100
Source: kraken2
Binary: kraken2 kraken2-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 2.0.7~beta-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 kraken2    - taxonomic classification system using exact k-mer matches
Closes: 924567
Changes:
 kraken2 (2.0.7~beta-1) unstable; urgency=low
 .
   * Initial release (Closes: #924567)
Checksums-Sha1:
 a1c04bb781fa08c7220e35080f8b45c0cf167a48 1643552 kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 0e012d589fd10bf75d5fafe5be2dc2dc5bb7811a 4457 kraken2_2.0.7~beta-1_armhf.buildinfo
 ead7dd781513345a49e6ade7b3cea2b1491cb8bc 758724 kraken2_2.0.7~beta-1_armhf.deb
Checksums-Sha256:
 b7c246ba1943116c4c21c67b82c4f2e8ae0c55f4e9ba2c6bcaa73037729f4f88 1643552 kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 b145014adfcb766fc188e36e45da252254c962d15b2db1e064c8bdec627a7bb5 4457 kraken2_2.0.7~beta-1_armhf.buildinfo
 c141f21b6436c4f9f9322c2d777896da304b5909352857c25c56d1ace493381d 758724 kraken2_2.0.7~beta-1_armhf.deb
Files:
 8d1de8d6653c0601f9418aed9f18455b 1643552 debug optional kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 013b8536e280dcb1e282add3c71b233e 4457 science optional kraken2_2.0.7~beta-1_armhf.buildinfo
 86a92b58be35c85e21538b5944175728 758724 science optional kraken2_2.0.7~beta-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: kraken2
Binary: kraken2
Architecture: armhf
Version: 2.0.7~beta-1
Checksums-Md5:
 8d1de8d6653c0601f9418aed9f18455b 1643552 kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 86a92b58be35c85e21538b5944175728 758724 kraken2_2.0.7~beta-1_armhf.deb
Checksums-Sha1:
 a1c04bb781fa08c7220e35080f8b45c0cf167a48 1643552 kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 ead7dd781513345a49e6ade7b3cea2b1491cb8bc 758724 kraken2_2.0.7~beta-1_armhf.deb
Checksums-Sha256:
 b7c246ba1943116c4c21c67b82c4f2e8ae0c55f4e9ba2c6bcaa73037729f4f88 1643552 kraken2-dbgsym_2.0.7~beta-1_armhf.deb
 c141f21b6436c4f9f9322c2d777896da304b5909352857c25c56d1ace493381d 758724 kraken2_2.0.7~beta-1_armhf.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 28 May 2019 16:58:15 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-9),
 autotools-dev (= 20180224.1),
 base-files (= 10.3),
 base-passwd (= 3.5.46),
 bash (= 5.0-4),
 binutils (= 2.31.1-16),
 binutils-common (= 2.31.1-16),
 binutils-x86-64-linux-gnu (= 2.31.1-16),
 bsdmainutils (= 11.1.2+b1),
 bsdutils (= 1:2.33.1-0.1),
 build-essential (= 12.6),
 bzip2 (= 1.0.6-9),
 coreutils (= 8.30-3),
 cpp (= 4:8.3.0-1),
 cpp-8 (= 8.3.0-7),
 dash (= 0.5.10.2-5),
 debconf (= 1.5.72),
 debhelper (= 12.1.1),
 debianutils (= 4.8.6.1),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.1.2-1),
 diffutils (= 1:3.7-3),
 dpkg (= 1.19.6),
 dpkg-dev (= 1.19.6),
 dwz (= 0.12-3),
 fdisk (= 2.33.1-0.1),
 file (= 1:5.35-4),
 findutils (= 4.6.0+git+20190209-2),
 g++ (= 4:8.3.0-1),
 g++-8 (= 8.3.0-7),
 gcc (= 4:8.3.0-1),
 gcc-8 (= 8.3.0-7),
 gcc-8-base (= 8.3.0-7),
 gettext (= 0.19.8.1-9),
 gettext-base (= 0.19.8.1-9),
 grep (= 3.3-1),
 groff-base (= 1.22.4-3),
 gzip (= 1.9-3),
 hostname (= 3.21),
 init-system-helpers (= 1.56+nmu1),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.53-4),
 libarchive-zip-perl (= 1.64-1),
 libasan5 (= 8.3.0-7),
 libatomic1 (= 8.3.0-7),
 libattr1 (= 1:2.4.48-4),
 libaudit-common (= 1:2.8.4-3),
 libaudit1 (= 1:2.8.4-3),
 libbinutils (= 2.31.1-16),
 libblkid1 (= 2.33.1-0.1),
 libbsd0 (= 0.9.1-2),
 libbz2-1.0 (= 1.0.6-9),
 libc-bin (= 2.28-10),
 libc-dev-bin (= 2.28-10),
 libc6 (= 2.28-10),
 libc6-dev (= 2.28-10),
 libcap-ng0 (= 0.7.9-2),
 libcc1-0 (= 8.3.0-7),
 libcroco3 (= 0.6.12-3),
 libdb5.3 (= 5.3.28+dfsg1-0.6),
 libdebconfclient0 (= 0.249),
 libdpkg-perl (= 1.19.6),
 libelf1 (= 0.176-1),
 libfdisk1 (= 2.33.1-0.1),
 libffi6 (= 3.2.1-9),
 libfile-stripnondeterminism-perl (= 1.1.2-1),
 libgcc-8-dev (= 8.3.0-7),
 libgcc1 (= 1:8.3.0-7),
 libgcrypt20 (= 1.8.4-5),
 libgdbm-compat4 (= 1.18.1-4),
 libgdbm6 (= 1.18.1-4),
 libglib2.0-0 (= 2.58.3-1),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgomp1 (= 8.3.0-7),
 libgpg-error0 (= 1.35-1),
 libicu63 (= 63.1-6),
 libisl19 (= 0.20-2),
 libitm1 (= 8.3.0-7),
 liblsan0 (= 8.3.0-7),
 liblz4-1 (= 1.8.3-1),
 liblzma5 (= 5.2.4-1),
 libmagic-mgc (= 1:5.35-4),
 libmagic1 (= 1:5.35-4),
 libmount1 (= 2.33.1-0.1),
 libmpc3 (= 1.1.0-1),
 libmpfr6 (= 4.0.2-1),
 libmpx2 (= 8.3.0-7),
 libncurses6 (= 6.1+20181013-2),
 libncursesw6 (= 6.1+20181013-2),
 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
 libpam-runtime (= 1.3.1-5),
 libpam0g (= 1.3.1-5),
 libpcre3 (= 2:8.39-12),
 libperl5.28 (= 5.28.1-6),
 libpipeline1 (= 1.5.1-2),
 libquadmath0 (= 8.3.0-7),
 libseccomp2 (= 2.3.3-4),
 libselinux1 (= 2.8-1+b1),
 libsigsegv2 (= 2.12-2),
 libsmartcols1 (= 2.33.1-0.1),
 libstdc++-8-dev (= 8.3.0-7),
 libstdc++6 (= 8.3.0-7),
 libsystemd0 (= 241-5),
 libtinfo6 (= 6.1+20181013-2),
 libtool (= 2.4.6-10),
 libtsan0 (= 8.3.0-7),
 libubsan1 (= 8.3.0-7),
 libuchardet0 (= 0.0.6-3),
 libudev1 (= 241-5),
 libunistring2 (= 0.9.10-1),
 libuuid1 (= 2.33.1-0.1),
 libxml2 (= 2.9.4+dfsg1-7+b3),
 linux-libc-dev (= 4.19.37-3),
 login (= 1:4.5-1.1),
 m4 (= 1.4.18-2),
 make (= 4.2.1-1.2),
 man-db (= 2.8.5-2),
 mawk (= 1.3.3-17+b3),
 ncurses-base (= 6.1+20181013-2),
 ncurses-bin (= 6.1+20181013-2),
 patch (= 2.7.6-3),
 perl (= 5.28.1-6),
 perl-base (= 5.28.1-6),
 perl-modules-5.28 (= 5.28.1-6),
 po-debconf (= 1.0.21),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12),
 sysvinit-utils (= 2.93-8),
 tar (= 1.30+dfsg-6),
 util-linux (= 2.33.1-0.1),
 xz-utils (= 5.2.4-1),
 zlib1g (= 1:1.2.11.dfsg-1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="POSIX"
 SOURCE_DATE_EPOCH="1552569197"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


kraken2-dbgsym_2.0.7~beta-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 1643552 bytes: control archive=804 bytes.
     545 bytes,    12 lines      control              
     617 bytes,     6 lines      md5sums              
 Package: kraken2-dbgsym
 Source: kraken2
 Version: 2.0.7~beta-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1715
 Depends: kraken2 (= 2.0.7~beta-1)
 Section: debug
 Priority: optional
 Description: debug symbols for kraken2
 Build-Ids: 37a071c43f006486a9e20f3291db93e94d73cd40 3b1d8d95d5519e7c6328daf7a3245875350c1425 4ec5c9f892f6b3793fb7130032035440826a9309 9b75e1686b7e6943aabceb9207cf69c0a102103c ca0b8082c9b1e254beb8a6b1fb8fb1792ce822fa

drwxr-xr-x root/root         0 2019-03-14 13:13 ./
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/37/
-rw-r--r-- root/root    114312 2019-03-14 13:13 ./usr/lib/debug/.build-id/37/a071c43f006486a9e20f3291db93e94d73cd40.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root    615104 2019-03-14 13:13 ./usr/lib/debug/.build-id/3b/1d8d95d5519e7c6328daf7a3245875350c1425.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root    335904 2019-03-14 13:13 ./usr/lib/debug/.build-id/4e/c5c9f892f6b3793fb7130032035440826a9309.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/9b/
-rw-r--r-- root/root    115108 2019-03-14 13:13 ./usr/lib/debug/.build-id/9b/75e1686b7e6943aabceb9207cf69c0a102103c.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.build-id/ca/
-rw-r--r-- root/root    372972 2019-03-14 13:13 ./usr/lib/debug/.build-id/ca/0b8082c9b1e254beb8a6b1fb8fb1792ce822fa.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root    183020 2019-03-14 13:13 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/kraken2.debug
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2-dbgsym -> kraken2


kraken2_2.0.7~beta-1_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 758724 bytes: control archive=3024 bytes.
    2371 bytes,    41 lines      control              
    4066 bytes,    54 lines      md5sums              
 Package: kraken2
 Version: 2.0.7~beta-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1431
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), ncbi-blast+
 Section: science
 Priority: optional
 Homepage: https://www.ccb.jhu.edu/software/kraken2/
 Description: taxonomic classification system using exact k-mer matches
  Kraken 2 is the newest version of Kraken, a taxonomic classification
  system using exact k-mer matches to achieve high accuracy and fast
  classification speeds. This classifier matches each k-mer within a query
  sequence to the lowest common ancestor (LCA) of all genomes containing
  the given k-mer. The k-mer assignments inform the classification
  algorithm. [see: Kraken 1's Webpage for more details].
  .
  Kraken 2 provides significant improvements to Kraken 1, with faster
  database build times, smaller database sizes, and faster classification
  speeds. These improvements were achieved by the following updates to the
  Kraken classification program:
  .
   1. Storage of Minimizers: Instead of storing/querying entire k-mers,
      Kraken 2 stores minimizers (l-mers) of each k-mer. The length of
      each l-mer must be ≤ the k-mer length. Each k-mer is treated by
      Kraken 2 as if its LCA is the same as its minimizer's LCA.
   2. Introduction of Spaced Seeds: Kraken 2 also uses spaced seeds to
      store and query minimizers to improve classification accuracy.
   3. Database Structure: While Kraken 1 saved an indexed and sorted list
      of k-mer/LCA pairs, Kraken 2 uses a compact hash table. This hash
      table is a probabilistic data structure that allows for faster
      queries and lower memory requirements. However, this data structure
      does have a <1% chance of returning the incorrect LCA or returning
      an LCA for a non-inserted minimizer. Users can compensate for this
      possibility by using Kraken's confidence scoring thresholds.
   4. Protein Databases: Kraken 2 allows for databases built from amino
      acid sequences. When queried, Kraken 2 performs a six-frame
      translated search of the query sequences against the database.
   5. 16S Databases: Kraken 2 also provides support for databases not
      based on NCBI's taxonomy. Currently, these include the 16S
      databases: Greengenes, SILVA, and RDP.

drwxr-xr-x root/root         0 2019-03-14 13:13 ./
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/bin/
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2 -> ../lib/kraken2/kraken2
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2-build -> ../lib/kraken2/kraken2-build
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/bin/kraken2-inspect -> ../lib/kraken2/kraken2-inspect
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/lib/kraken2/
-rwxr-xr-x root/root       959 2019-03-14 13:13 ./usr/lib/kraken2/16S_gg_installation.sh
-rwxr-xr-x root/root       956 2019-03-14 13:13 ./usr/lib/kraken2/16S_rdp_installation.sh
-rwxr-xr-x root/root      1101 2019-03-14 13:13 ./usr/lib/kraken2/16S_silva_installation.sh
-rwxr-xr-x root/root       947 2019-03-14 13:13 ./usr/lib/kraken2/add_to_library.sh
-rwxr-xr-x root/root     54932 2019-03-14 13:13 ./usr/lib/kraken2/build_db
-rwxr-xr-x root/root      2434 2019-03-14 13:13 ./usr/lib/kraken2/build_gg_taxonomy.pl
-rwxr-xr-x root/root      4297 2019-03-14 13:13 ./usr/lib/kraken2/build_kraken2_db.sh
-rwxr-xr-x root/root      2187 2019-03-14 13:13 ./usr/lib/kraken2/build_rdp_taxonomy.pl
-rwxr-xr-x root/root      1265 2019-03-14 13:13 ./usr/lib/kraken2/build_silva_taxonomy.pl
-rwxr-xr-x root/root     83604 2019-03-14 13:13 ./usr/lib/kraken2/classify
-rwxr-xr-x root/root       583 2019-03-14 13:13 ./usr/lib/kraken2/clean_db.sh
-rwxr-xr-x root/root      1273 2019-03-14 13:13 ./usr/lib/kraken2/cp_into_tempfile.pl
-rwxr-xr-x root/root      4353 2019-03-14 13:13 ./usr/lib/kraken2/download_genomic_library.sh
-rwxr-xr-x root/root      1610 2019-03-14 13:13 ./usr/lib/kraken2/download_taxonomy.sh
-rwxr-xr-x root/root     46740 2019-03-14 13:13 ./usr/lib/kraken2/dump_table
-rwxr-xr-x root/root     22108 2019-03-14 13:13 ./usr/lib/kraken2/estimate_capacity
-rwxr-xr-x root/root      7397 2019-03-14 13:13 ./usr/lib/kraken2/kraken2
-rwxr-xr-x root/root      8386 2019-03-14 13:13 ./usr/lib/kraken2/kraken2-build
-rwxr-xr-x root/root      2703 2019-03-14 13:13 ./usr/lib/kraken2/kraken2-inspect
-rw-r--r-- root/root      2803 2019-03-14 13:13 ./usr/lib/kraken2/kraken2lib.pm
-rwxr-xr-x root/root     18012 2019-03-14 13:13 ./usr/lib/kraken2/lookup_accession_numbers
-rwxr-xr-x root/root      1776 2019-03-14 13:13 ./usr/lib/kraken2/lookup_accession_numbers.pl
-rwxr-xr-x root/root      3879 2019-03-14 13:13 ./usr/lib/kraken2/make_seqid2taxid_map.pl
-rwxr-xr-x root/root      1213 2019-03-14 13:13 ./usr/lib/kraken2/mask_low_complexity.sh
-rwxr-xr-x root/root      4594 2019-03-14 13:13 ./usr/lib/kraken2/rsync_from_ncbi.pl
-rwxr-xr-x root/root      1655 2019-03-14 13:13 ./usr/lib/kraken2/scan_fasta_file.pl
-rwxr-xr-x root/root      1361 2019-03-14 13:13 ./usr/lib/kraken2/standard_installation.sh
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc-base/
-rw-r--r-- root/root      2282 2019-03-14 13:13 ./usr/share/doc-base/kraken2
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/
-rw-r--r-- root/root       261 2019-03-14 13:13 ./usr/share/doc/kraken2/README.test
-rw-r--r-- root/root       159 2019-03-14 13:13 ./usr/share/doc/kraken2/changelog.Debian.gz
-rw-r--r-- root/root      1429 2018-08-11 21:51 ./usr/share/doc/kraken2/changelog.gz
-rw-r--r-- root/root      1012 2019-03-14 13:13 ./usr/share/doc/kraken2/copyright
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/html/
-rw-r--r-- root/root     42908 2018-08-11 21:51 ./usr/share/doc/kraken2/html/MANUAL.html
-rw-r--r-- root/root       188 2019-03-14 13:13 ./usr/share/doc/kraken2/html/bar-bg.png
-rw-r--r-- root/root       111 2018-08-11 21:51 ./usr/share/doc/kraken2/html/head.html
lrwxrwxrwx root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/html/index.html -> MANUAL.html
-rw-r--r-- root/root       727 2018-08-11 21:51 ./usr/share/doc/kraken2/html/kraken.css
-rw-r--r-- root/root       199 2018-08-11 21:51 ./usr/share/doc/kraken2/html/top.html
-rw-r--r-- root/root       710 2019-03-14 13:13 ./usr/share/doc/kraken2/run-unit-test
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/
-rw-r--r-- root/root      1776 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/Acartia_tonsa.fasta
-rw-r--r-- root/root      1578 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/Acinetobacter_phage.fasta.gz
-rw-r--r-- root/root       237 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test.fa
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/
-rw-r--r-- root/root      1834 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/citation.dmp
-rw-r--r-- root/root    807186 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/delnodes.dmp.gz
-rw-r--r-- root/root       442 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/division.dmp
-rw-r--r-- root/root      2335 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gc.prt.gz
-rw-r--r-- root/root       779 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gencode.dmp.gz
-rw-r--r-- root/root        34 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gi_taxid_nucl.dmp
-rw-r--r-- root/root    261119 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/merged.dmp.gz
-rw-r--r-- root/root       870 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/names.dmp
-rw-r--r-- root/root       834 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/nodes.dmp
-rw-r--r-- root/root      2652 2019-03-14 13:13 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/readme.txt
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/man/
drwxr-xr-x root/root         0 2019-03-14 13:13 ./usr/share/man/man1/
-rw-r--r-- root/root      1131 2019-03-14 13:13 ./usr/share/man/man1/kraken2-build.1.gz
-rw-r--r-- root/root       535 2019-03-14 13:13 ./usr/share/man/man1/kraken2-inspect.1.gz
-rw-r--r-- root/root       945 2019-03-14 13:13 ./usr/share/man/man1/kraken2.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 19388
Build-Time: 40
Distribution: unstable
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 25
Job: kraken2_2.0.7~beta-1
Lintian: pass
Machine Architecture: amd64
Package: kraken2
Package-Time: 75
Source-Version: 2.0.7~beta-1
Space: 19388
Status: successful
Version: 2.0.7~beta-1
--------------------------------------------------------------------------------
Finished at 2019-05-28T16:58:15Z
Build needed 00:01:15, 19388k disk space