sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| kraken2 2.0.8~beta-1 (armel)                 Sat, 16 Nov 2019 02:17:12 +0000 |
+==============================================================================+

Package: kraken2
Version: 2.0.8~beta-1
Source Version: 2.0.8~beta-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armel
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-fe25d1a1-3a84-4329-aee6-a16b7ec2e2ef' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/kraken2-jl03gu/resolver-ODiHRo' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-0817.07.pdiff [6547 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-1420.46.pdiff [7033 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-2014.34.pdiff [15.8 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-0817.07.pdiff [23.7 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-1420.46.pdiff [24.1 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-2014.34.pdiff [47.6 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-11-15-2014.34.pdiff [15.8 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-11-15-2014.34.pdiff [47.6 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [7933 kB]
Fetched 8252 kB in 2s (3868 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  libcap-ng0 libseccomp2 libselinux1 libzstd1
4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 396 kB of archives.
After this operation, 10.2 kB of additional disk space will be used.
Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libcap-ng0 amd64 0.7.9-2.1+b1 [14.7 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libseccomp2 amd64 2.4.2-2 [43.8 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libselinux1 amd64 2.9-3+b1 [87.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [250 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../libcap-ng0_0.7.9-2.1+b1_amd64.deb ...
Unpacking libcap-ng0:amd64 (0.7.9-2.1+b1) over (0.7.9-2.1) ...
Setting up libcap-ng0:amd64 (0.7.9-2.1+b1) ...
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Preparing to unpack .../libseccomp2_2.4.2-2_amd64.deb ...
Unpacking libseccomp2:amd64 (2.4.2-2) over (2.4.2-1) ...
Setting up libseccomp2:amd64 (2.4.2-2) ...
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Preparing to unpack .../libselinux1_2.9-3+b1_amd64.deb ...
Unpacking libselinux1:amd64 (2.9-3+b1) over (2.9-3) ...
Setting up libselinux1:amd64 (2.9-3+b1) ...
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(Reading database ... 14998 files and directories currently installed.)
Preparing to unpack .../libzstd1_1.4.4+dfsg-1_amd64.deb ...
Unpacking libzstd1:amd64 (1.4.4+dfsg-1) over (1.4.3+dfsg-1) ...
Setting up libzstd1:amd64 (1.4.4+dfsg-1) ...
Processing triggers for libc-bin (2.29-3) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/kraken2.git
Please use:
git clone https://salsa.debian.org/med-team/kraken2.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 414 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.8~beta-1 (dsc) [1993 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.8~beta-1 (tar) [73.6 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main kraken2 2.0.8~beta-1 (diff) [338 kB]
Fetched 414 kB in 0s (0 B/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/kraken2-jl03gu/kraken2-2.0.8~beta' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/kraken2-jl03gu' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [404 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [491 B]
Fetched 1852 B in 0s (92.9 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi
  gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel
  gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross
  libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel
  libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl
  libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel
  libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross
  libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1
  libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:armel
  libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross
  libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross
  libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf
  sensible-utils ucf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican
  | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch
  gcc-9-doc libstdc++6-9-dbg-armel-cross libgcc1-dbg-armel-cross
  libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross
  libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross
  libubsan1-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev flex
  bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel
  manpages-dev:armel libstdc++-9-doc:armel libtool-doc gfortran
  | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl
  libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi
  bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config
  crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism
  dpkg-cross dwz file g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi
  gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel
  gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross
  libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel
  libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl
  libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel
  libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross
  libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1
  libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:armel
  libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross
  libsub-override-perl libtool libubsan1:armel libubsan1-armel-cross
  libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl
  linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf
  sbuild-build-depends-main-dummy:armel sensible-utils ucf
0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded.
Need to get 61.8 MB of archives.
After this operation, 244 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.0-1 [1307 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-19 [194 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-6 [253 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-6 [119 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-6 [67.2 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.33.1-2 [2721 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-19cross1 [194 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [6812 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-19cross1 [190 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-19cross1 [39.0 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-19cross1 [74.8 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-19cross1 [8944 B]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-19cross1 [340 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-19cross1 [377 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-19cross1 [110 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-19cross1 [644 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7157 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-19cross1 [1709 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-19cross1 [7390 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b4 [710 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.7.1 [173 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-1 [104 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.2-1 [23.6 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.2-1 [14.6 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-2 [145 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.2-3 [1318 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.7.1 [997 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-19 [38.9 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-3 [2348 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-19 [347 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-19 [9092 B]
Get:79 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.3.9-2 [986 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-3 [2195 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-19 [77.1 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-19 [415 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-19 [111 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-19 [643 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-19 [1739 kB]
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
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update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armel included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64)
Toolchain package versions: binutils_2.33.1-2 dpkg-dev_1.19.7 g++-8_8.3.0-24 g++-9_9.2.1-19 gcc-8_8.3.0-24 gcc-9_9.2.1-19 libc6-dev_2.29-3 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 linux-libc-dev_5.3.9-2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-2 binutils-arm-linux-gnueabi_2.33.1-2 binutils-common_2.33.1-2 binutils-x86-64-linux-gnu_2.33.1-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-24 cpp-9_9.2.1-19 cpp-9-arm-linux-gnueabi_9.2.1-19cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-2 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-24 g++-9_9.2.1-19 g++-9-arm-linux-gnueabi_9.2.1-19cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-24 gcc-8-base_8.3.0-24 gcc-9_9.2.1-19 gcc-9-arm-linux-gnueabi_9.2.1-19cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-19cross1 gcc-9-base_9.2.1-19 gcc-9-cross-base_9.2.1-19cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-19 libasan5-armel-cross_9.2.1-19cross1 libatomic1_9.2.1-19 libatomic1-armel-cross_9.2.1-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.33.1-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3 libc-dev-bin_2.29-3 libc6_2.29-3 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-3 libc6-dev-armel-cross_2.29-1cross7 libcap-ng0_0.7.9-2.1+b1 libcc1-0_9.2.1-19 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-24 libgcc-9-dev_9.2.1-19 libgcc-9-dev-armel-cross_9.2.1-19cross1 libgcc1_1:9.2.1-19 libgcc1-armel-cross_1:9.2.1-19cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-4 libgomp1_9.2.1-19 libgomp1-armel-cross_9.2.1-19cross1 libgpg-error0_1.36-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-19 liblocale-gettext-perl_1.07-4 liblsan0_9.2.1-19 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-24 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libquadmath0_9.2.1-19 libseccomp2_2.4.2-2 libselinux1_2.9-3+b1 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-24 libstdc++-9-dev_9.2.1-19 libstdc++-9-dev-armel-cross_9.2.1-19cross1 libstdc++6_9.2.1-19 libstdc++6-armel-cross_9.2.1-19cross1 libsub-override-perl_0.09-2 libsystemd0_243-6 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libtsan0_9.2.1-19 libubsan1_9.2.1-19 libubsan1-armel-cross_9.2.1-19cross1 libuchardet0_0.0.6-3 libudev1_243-6 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b4 libyaml-perl_1.29-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.9-2 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96-1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: kraken2
Binary: kraken2
Architecture: any
Version: 2.0.8~beta-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://www.ccb.jhu.edu/software/kraken2/
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/kraken2
Vcs-Git: https://salsa.debian.org/med-team/kraken2.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 12)
Package-List:
 kraken2 deb science optional arch=any
Checksums-Sha1:
 82ca66617e3680475c35634125e35839201534c7 73570 kraken2_2.0.8~beta.orig.tar.gz
 5dccbf46fcb99f426b3229e1be6dcdbeba685b49 338060 kraken2_2.0.8~beta-1.debian.tar.xz
Checksums-Sha256:
 f2a91fc57a40b3e87df8ac2ea7c0ff1060cc9295c95de417ee53249ee3f7ad8e 73570 kraken2_2.0.8~beta.orig.tar.gz
 06058c4ee869364108bfdd7c03417fc64d2f0ba85f5cf3d65e2af97ebc8851c9 338060 kraken2_2.0.8~beta-1.debian.tar.xz
Files:
 dd0e9847ac0c1c35a4feda84a74c69a5 73570 kraken2_2.0.8~beta.orig.tar.gz
 d318d40bf33c1536b45e86b3afeef40d 338060 kraken2_2.0.8~beta-1.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Aug  1 11:39:38 2019 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./kraken2_2.0.8~beta-1.dsc
dpkg-source: info: extracting kraken2 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking kraken2_2.0.8~beta.orig.tar.gz
dpkg-source: info: unpacking kraken2_2.0.8~beta-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_install.patch
dpkg-source: info: applying hardening+debug_options.patch
dpkg-source: info: applying fix_reading_fasta.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armel
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-fe25d1a1-3a84-4329-aee6-a16b7ec2e2ef
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package kraken2
dpkg-buildpackage: info: source version 2.0.8~beta-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armel
 fakeroot debian/rules clean
dh clean  --sourcedirectory=src
   dh_auto_clean -O--sourcedirectory=src
	cd src && make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_autoreconf_clean -O--sourcedirectory=src
   dh_clean -O--sourcedirectory=src
 debian/rules build-arch
dh build-arch  --sourcedirectory=src
   dh_update_autotools_config -a -O--sourcedirectory=src
   dh_autoreconf -a -O--sourcedirectory=src
   dh_auto_configure -a -O--sourcedirectory=src
   dh_auto_build -a -O--sourcedirectory=src
	cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o seqreader.o seqreader.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmscanner.o mmscanner.cc
In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72,
                 from /usr/arm-linux-gnueabi/include/c++/9/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kraken2::MinimizerData&}; _Tp = kraken2::MinimizerData; _Alloc = std::allocator<kraken2::MinimizerData>]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<kraken2::MinimizerData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67,
                 from /usr/arm-linux-gnueabi/include/c++/9/queue:61,
                 from kraken2_headers.h:15,
                 from mmscanner.h:10,
                 from mmscanner.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In member function ‘uint64_t* kraken2::MinimizerScanner::NextMinimizer(bool*)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<kraken2::MinimizerData*, std::vector<kraken2::MinimizerData> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o omp_hack.o omp_hack.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o utilities.o utilities.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  estimate_capacity.cc seqreader.o mmscanner.o omp_hack.o utilities.o   -o estimate_capacity
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mmap_file.o mmap_file.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o compact_hash.o compact_hash.cc
compact_hash.cc: In constructor ‘kraken2::CompactHashTable::CompactHashTable(size_t, size_t, size_t)’:
compact_hash.cc:32:27: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
   32 |   } catch (std::bad_alloc ex) {
      |                           ^~
compact_hash.cc: In member function ‘void kraken2::CompactHashTable::LoadTable(const char*, bool)’:
compact_hash.cc:86:29: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
   86 |     } catch (std::bad_alloc ex) {
      |                             ^~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o taxonomy.o taxonomy.cc
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const long long unsigned int&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, std::set<long long unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >’} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h: In member function ‘void kraken2::NCBITaxonomy::MarkNode(uint64_t)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h: In constructor ‘kraken2::NCBITaxonomy::NCBITaxonomy(std::string, std::string)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:60,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<long long unsigned int&&>, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair<const long long unsigned int, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >; _Compare = std::less<long long unsigned int>; _Alloc = std::allocator<std::pair<const long long unsigned int, long long unsigned int> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:61,
                 from kraken2_headers.h:14,
                 from mmap_file.h:10,
                 from taxonomy.h:10,
                 from taxonomy.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h: In member function ‘void kraken2::NCBITaxonomy::ConvertToKrakenTaxonomy(const char*)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  518 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, long long unsigned int>, std::_Select1st<std::pair<const long long unsigned int, long long unsigned int> >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::set<long long unsigned int> >, std::_Select1st<std::pair<const long long unsigned int, std::set<long long unsigned int> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::set<long long unsigned int> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::set<long long unsigned int> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<long long unsigned int, std::pair<const long long unsigned int, std::__cxx11::basic_string<char> >, std::_Select1st<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >, std::less<long long unsigned int>, std::allocator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const long long unsigned int, std::__cxx11::basic_string<char> > >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  build_db.cc mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o   -o build_db
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:60,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
 2452 |       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/9/map:61,
                 from kraken2_headers.h:14,
                 from build_db.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h: In function ‘void ReadIDToTaxonMap(std::map<std::__cxx11::basic_string<char>, long long unsigned int>&, std::string&)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h: In function ‘_Z16ProcessSequencesR7OptionsRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEySt4lessIS7_ESaISt4pairIKS7_yEEERN7kraken216CompactHashTableERNSG_8TaxonomyE._omp_fn.0’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
  499 |    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o reports.o reports.cc
In file included from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62,
                 from kraken2_headers.h:1,
                 from reports.h:10,
                 from reports.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void kraken2::MpaReportDFS(taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)::<lambda(const uint64_t&, const uint64_t&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1939 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1953 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h: In function ‘void kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, kraken2::Taxonomy&, taxon_counts_t&, taxon_counts_t&, uint64_t, char, int, int)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1967 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1968 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1969 |     __comp);
      |     ~~~~~~~              
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1884 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1889 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2  -c -o aa_translate.o aa_translate.cc
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  classify.cc reports.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o   -o classify
classify.cc: In function ‘void ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)’:
classify.cc:314:44: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
  314 |           sprintf(buffer, " kraken:taxid|%lu", tax.nodes()[call].external_id);
      |                                          ~~^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                            |                     |
      |                                            long unsigned int     uint64_t {aka long long unsigned int}
      |                                          %llu
In file included from /usr/arm-linux-gnueabi/include/c++/9/bits/stl_algo.h:61,
                 from /usr/arm-linux-gnueabi/include/c++/9/algorithm:62,
                 from kraken2_headers.h:1,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_val<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:128:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >’ changed in GCC 7.1
  128 |     __push_heap(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<ProcessFiles(const char*, const char*, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, OutputStreamData&, taxon_counts_t&)::<lambda(const OutputData&, const OutputData&)> >]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >’ changed in GCC 7.1
  214 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:72,
                 from /usr/arm-linux-gnueabi/include/c++/9/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OutputData&}; _Tp = OutputData; _Alloc = std::allocator<OutputData>]’:
/usr/arm-linux-gnueabi/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<OutputData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >’} changed in GCC 7.1
In file included from /usr/arm-linux-gnueabi/include/c++/9/vector:67,
                 from /usr/arm-linux-gnueabi/include/c++/9/queue:61,
                 from kraken2_headers.h:15,
                 from classify.cc:7:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In function ‘taxid_t ClassifySequence(kraken2::Sequence&, kraken2::Sequence&, std::ostringstream&, kraken2::KeyValueStore*, kraken2::Taxonomy&, IndexOptions&, Options&, ClassificationStats&, kraken2::MinimizerScanner&, std::vector<long long unsigned int>&, taxon_counts_t&, std::vector<std::__cxx11::basic_string<char> >&)’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h: In function ‘_Z12ProcessFilesPKcS0_PN7kraken213KeyValueStoreERNS1_8TaxonomyER12IndexOptionsR7OptionsR19ClassificationStatsR16OutputStreamDataRSt13unordered_mapIyySt4hashIyESt8equal_toIyESaISt4pairIKyyEEE._omp_fn.0’:
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<OutputData*, std::vector<OutputData> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
/usr/arm-linux-gnueabi/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
 1195 |    _M_realloc_insert(end(), __x);
      |    ^~~~~~~~~~~~~~~~~
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  dump_table.cc mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o   -o dump_table
arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  lookup_accession_numbers.cc mmap_file.o omp_hack.o utilities.o   -o lookup_accession_numbers
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
   dh_auto_test -a -O--sourcedirectory=src
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch  --sourcedirectory=src
   dh_testroot -a -O--sourcedirectory=src
   dh_prep -a -O--sourcedirectory=src
   dh_installdirs -a -O--sourcedirectory=src
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- KRAKEN2_DIR=/<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
	cd src && make -j1 install DESTDIR=/<<BUILDDIR>>/kraken2-2.0.8\~beta/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/<<BUILDDIR>>/kraken2-2.0.8\~beta/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
./install_kraken2.sh /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'

Kraken 2 installation complete.

To make things easier for you, you may want to copy/symlink the following
files into a directory in your PATH:
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-build
  /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken2-inspect
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--sourcedirectory=src
   dh_installchangelogs -a -O--sourcedirectory=src
   dh_installman -a -O--sourcedirectory=src
   dh_installinit -a -O--sourcedirectory=src
   dh_installsystemduser -a -O--sourcedirectory=src
   dh_perl -a -O--sourcedirectory=src
dh_perl: /usr/lib/arm-linux-gnueabi/perl/cross-config-5.30.0/Config.pm does not exist (missing build dependency on perl-xs-dev?)
   debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
for file in /<<PKGBUILDDIR>>/debian/kraken2/usr/lib/kraken2/kraken* ; do \
    if ! echo ${file} | grep -q '\.pm$' ; then \
	ln -s ../lib/kraken2/`basename ${file}` /<<PKGBUILDDIR>>/debian/kraken2/usr/bin/`basename ${file}` ; \
    fi \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_strip_nondeterminism -a -O--sourcedirectory=src
   dh_compress -a -O--sourcedirectory=src
   dh_fixperms -a -O--sourcedirectory=src
   dh_missing -a -O--sourcedirectory=src
   dh_dwz -a -O--sourcedirectory=src
   dh_strip -a -O--sourcedirectory=src
   dh_makeshlibs -a -O--sourcedirectory=src
   dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/lookup_accession_numbers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/build_db contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/classify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/dump_table contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/estimate_capacity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a -O--sourcedirectory=src
   dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined
   dh_md5sums -a -O--sourcedirectory=src
   dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'kraken2' in '../kraken2_2.0.8~beta-1_armel.deb'.
dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.0.8~beta-1_armel.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../kraken2_2.0.8~beta-1_armel.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-11-16T02:18:25Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


kraken2_2.0.8~beta-1_armel.changes:
-----------------------------------

Format: 1.8
Date: Thu, 01 Aug 2019 13:36:17 +0200
Source: kraken2
Binary: kraken2 kraken2-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armel
Version: 2.0.8~beta-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 kraken2    - taxonomic classification system using exact k-mer matches
Changes:
 kraken2 (2.0.8~beta-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.0
Checksums-Sha1:
 d6d061cccf68397231bc105e04073cd4f03291a7 1303660 kraken2-dbgsym_2.0.8~beta-1_armel.deb
 5ad604c980d107ca2cbbfb8629fea05c2cbad123 4673 kraken2_2.0.8~beta-1_armel.buildinfo
 3df6eb1de7fccdf97f05b22e2ccf0c07fd0a7d43 759424 kraken2_2.0.8~beta-1_armel.deb
Checksums-Sha256:
 66f806c5aa50ca307b08ddd7e99e51eaaf048fde98342a3eb070f224c8a19d8c 1303660 kraken2-dbgsym_2.0.8~beta-1_armel.deb
 9586370532be7a0b2c621880385e2a11de24480e0a15fa32ba34a9a107cd738f 4673 kraken2_2.0.8~beta-1_armel.buildinfo
 5d6e8d1375cfda564e4077b98c9c5efa9621326668364f9c60d876504862b4af 759424 kraken2_2.0.8~beta-1_armel.deb
Files:
 75ecb79c65e17347e6e0afa141dd4d0f 1303660 debug optional kraken2-dbgsym_2.0.8~beta-1_armel.deb
 fc0ac85bff2cb6497bce31e162f58d8a 4673 science optional kraken2_2.0.8~beta-1_armel.buildinfo
 e36dcd9295213f21dfed25f96a9d5202 759424 science optional kraken2_2.0.8~beta-1_armel.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: kraken2
Binary: kraken2
Architecture: armel
Version: 2.0.8~beta-1
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Build-Architecture: amd64
Build-Date: Sat, 16 Nov 2019 02:18:24 +0000
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 SOURCE_DATE_EPOCH="1564659377"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


kraken2-dbgsym_2.0.8~beta-1_armel.deb
-------------------------------------

 new Debian package, version 2.0.
 size 1303660 bytes: control archive=804 bytes.
     545 bytes,    12 lines      control              
     615 bytes,     6 lines      md5sums              
 Package: kraken2-dbgsym
 Source: kraken2
 Version: 2.0.8~beta-1
 Auto-Built-Package: debug-symbols
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1393
 Depends: kraken2 (= 2.0.8~beta-1)
 Section: debug
 Priority: optional
 Description: debug symbols for kraken2
 Build-Ids: 1169825c853a01be2a411b0c582a50069592cbe5 3ddebd0020d44c657d4b69d4a2beeb670cc91905 4bebb1514efa54c3fb8d04c097930cc11b5f3005 9489cab9f3cdeb40bcc96ec888a98812e8978979 c6173bc6a2ff1701b3bf4cfa32f45a2ed3e0dc7f

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drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/lib/debug/.dwz/arm-linux-gnueabi/
-rw-r--r-- root/root    184872 2019-08-01 11:36 ./usr/lib/debug/.dwz/arm-linux-gnueabi/kraken2.debug
drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/share/
drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-08-01 11:36 ./usr/share/doc/kraken2-dbgsym -> kraken2


kraken2_2.0.8~beta-1_armel.deb
------------------------------

 new Debian package, version 2.0.
 size 759424 bytes: control archive=3020 bytes.
    2369 bytes,    41 lines      control              
    4066 bytes,    54 lines      md5sums              
 Package: kraken2
 Version: 2.0.8~beta-1
 Architecture: armel
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1509
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 6), libstdc++6 (>= 5.2), ncbi-blast+
 Section: science
 Priority: optional
 Homepage: https://www.ccb.jhu.edu/software/kraken2/
 Description: taxonomic classification system using exact k-mer matches
  Kraken 2 is the newest version of Kraken, a taxonomic classification
  system using exact k-mer matches to achieve high accuracy and fast
  classification speeds. This classifier matches each k-mer within a query
  sequence to the lowest common ancestor (LCA) of all genomes containing
  the given k-mer. The k-mer assignments inform the classification
  algorithm. [see: Kraken 1's Webpage for more details].
  .
  Kraken 2 provides significant improvements to Kraken 1, with faster
  database build times, smaller database sizes, and faster classification
  speeds. These improvements were achieved by the following updates to the
  Kraken classification program:
  .
   1. Storage of Minimizers: Instead of storing/querying entire k-mers,
      Kraken 2 stores minimizers (l-mers) of each k-mer. The length of
      each l-mer must be ≤ the k-mer length. Each k-mer is treated by
      Kraken 2 as if its LCA is the same as its minimizer's LCA.
   2. Introduction of Spaced Seeds: Kraken 2 also uses spaced seeds to
      store and query minimizers to improve classification accuracy.
   3. Database Structure: While Kraken 1 saved an indexed and sorted list
      of k-mer/LCA pairs, Kraken 2 uses a compact hash table. This hash
      table is a probabilistic data structure that allows for faster
      queries and lower memory requirements. However, this data structure
      does have a <1% chance of returning the incorrect LCA or returning
      an LCA for a non-inserted minimizer. Users can compensate for this
      possibility by using Kraken's confidence scoring thresholds.
   4. Protein Databases: Kraken 2 allows for databases built from amino
      acid sequences. When queried, Kraken 2 performs a six-frame
      translated search of the query sequences against the database.
   5. 16S Databases: Kraken 2 also provides support for databases not
      based on NCBI's taxonomy. Currently, these include the 16S
      databases: Greengenes, SILVA, and RDP.

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drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/bin/
lrwxrwxrwx root/root         0 2019-08-01 11:36 ./usr/bin/kraken2 -> ../lib/kraken2/kraken2
lrwxrwxrwx root/root         0 2019-08-01 11:36 ./usr/bin/kraken2-build -> ../lib/kraken2/kraken2-build
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drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/lib/
drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/lib/kraken2/
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-rwxr-xr-x root/root      1101 2019-08-01 11:36 ./usr/lib/kraken2/16S_silva_installation.sh
-rwxr-xr-x root/root       947 2019-08-01 11:36 ./usr/lib/kraken2/add_to_library.sh
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-rwxr-xr-x root/root       583 2019-08-01 11:36 ./usr/lib/kraken2/clean_db.sh
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-rw-r--r-- root/root      2803 2019-08-01 11:36 ./usr/lib/kraken2/kraken2lib.pm
-rwxr-xr-x root/root     22096 2019-08-01 11:36 ./usr/lib/kraken2/lookup_accession_numbers
-rwxr-xr-x root/root      1776 2019-08-01 11:36 ./usr/lib/kraken2/lookup_accession_numbers.pl
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-rwxr-xr-x root/root      1213 2019-08-01 11:36 ./usr/lib/kraken2/mask_low_complexity.sh
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-rwxr-xr-x root/root      1507 2019-08-01 11:36 ./usr/lib/kraken2/standard_installation.sh
drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/share/
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-rw-r--r-- root/root      1012 2019-08-01 11:36 ./usr/share/doc/kraken2/copyright
drwxr-xr-x root/root         0 2019-08-01 11:36 ./usr/share/doc/kraken2/html/
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-rw-r--r-- root/root       727 2019-04-25 04:04 ./usr/share/doc/kraken2/html/kraken.css
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  libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl
  liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl
  libmailtools-perl libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libnamespace-clean-perl libnet-dns-perl
  libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl
  libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl
  libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl
  libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl
  libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl
  libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase
  patchutils perl-openssl-defaults readline-common t1utils
Suggested packages:
  libdata-dump-perl ca-certificates libscalar-number-perl
  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl
  binutils-multiarch libtext-template-perl readline-doc
Recommended packages:
  gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
  libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl
  libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl
  libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl
  libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl
  libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl
  libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl
  libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl
  libio-async-loop-epoll-perl libio-async-perl libio-pty-perl
  libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl
  liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl
  libmailtools-perl libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libnamespace-clean-perl libnet-dns-perl
  libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl
  libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl
  libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl
  libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl
  libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl
  libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase
  patchutils perl-openssl-defaults readline-common
  sbuild-build-depends-lintian-dummy:armel t1utils
0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
Need to get 8875 kB of archives.
After this operation, 25.1 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.30.1-1 [649 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-1 [14.9 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1+b1 [321 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.42-1 [82.6 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b2 [16.9 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b6 [33.6 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.35.0 [1292 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8875 kB in 0s (28.1 MB/s)
Selecting previously unselected package readline-common.
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| Post Build                                                                   |
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| Summary                                                                      |
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Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 18876
Build-Time: 43
Distribution: unstable
Foreign Architectures: armel
Host Architecture: armel
Install-Time: 16
Job: kraken2_2.0.8~beta-1
Lintian: pass
Machine Architecture: amd64
Package: kraken2
Package-Time: 73
Source-Version: 2.0.8~beta-1
Space: 18876
Status: successful
Version: 2.0.8~beta-1
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Finished at 2019-11-16T02:18:25Z
Build needed 00:01:13, 18876k disk space