sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kraken2 2.1.1-1 (mipsel) Tue, 24 Nov 2020 11:29:32 +0000 | +==============================================================================+ Package: kraken2 Version: 2.1.1-1 Source Version: 2.1.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-e6d25cb6-8ec1-49e7-8f59-f2cea71fc502' with '<>' I: NOTICE: Log filtering will replace 'build/kraken2-udeGTf/resolver-n8Sxao' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-11-24-0812.53.pdiff [3692 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-11-24-0812.53.pdiff [1774 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-11-24-0812.53.pdiff [3692 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-11-24-0812.53.pdiff [1774 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8227 kB] Fetched 8453 kB in 2s (5353 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 536 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.1-1 (dsc) [1965 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.1-1 (tar) [194 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.1-1 (diff) [340 kB] Fetched 536 kB in 0s (30.1 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kraken2-udeGTf/kraken2-2.1.1' with '<>' I: NOTICE: Log filtering will replace 'build/kraken2-udeGTf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1852 B in 0s (85.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libnss-nis:mipsel libnss-nisplus:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mipsel-linux-gnu gcc-10-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel gnupg git bzr krb5-doc:mipsel krb5-user:mipsel libstdc++-10-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mipsel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libicu67 libio-string-perl libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libnss-nis:mipsel libnss-nisplus:mipsel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:mipsel sensible-utils ucf 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After this operation, 694 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-1 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.2.0-18 [200 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-18 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.35.1-2cross2 [2354 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-18 [1740 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-18 [69.2 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu-base amd64 10.2.0-17cross1 [200 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mipsel-linux-gnu amd64 10.2.0-17cross1 [6985 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:10.2.0-1 [16.9 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.0-17cross1 [196 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.31-2cross1 [1212 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10.2.0-17cross1 [46.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10.2.0-17cross1 [91.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10.2.0-17cross1 [6644 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mipsel-cross all 10.2.0-17cross1 [244 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu amd64 10.2.0-17cross1 [13.6 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10.2.0-17cross1 [396 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.7.10-1cross1 [1237 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.31-2cross1 [2074 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mipsel-cross all 10.2.0-17cross1 [1746 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mipsel-linux-gnu amd64 10.2.0-17cross1 [7648 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:10.2.0-1 [1180 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.2 [692 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-1 [1364 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.2.0-18 [46.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.17-1 [111 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.45.6-1 [71.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.18.3-4 [64.3 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.18.3-4 [118 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1h-1 [1188 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.18.3-4 [335 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.18.3-4 [149 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc3 mipsel 1.2.6-3 [73.7 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main mipsel libnss-nis mipsel 3.1-4 [22.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main mipsel libnss-nisplus mipsel 1.3-4 [18.9 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.31-4 [2414 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.2.0-18 [6704 B] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.9.9-1 [1219 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.17-1 [132 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc-dev mipsel 1.2.6-3 [197 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.31-4 [2009 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.2.0-18 [93.0 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-18 [222 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.2.0-18 [437 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-18 [1717 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 154 MB in 1s (114 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10514 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-1_amd64.deb ... Unpacking bsdextrautils (2.36.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... 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Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.3-1) ... No schema files found: doing nothing. Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:mipsel (5.9.9-1) ... Setting up libc6-mipsel-cross (2.31-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.39-3) ... Setting up gcc-10-mipsel-linux-gnu-base:amd64 (10.2.0-17cross1) ... Setting up gcc-10-base:mipsel (10.2.0-18) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up gcc-10-cross-base-mipsen (10.2.0-17cross1) ... Setting up binutils-mipsel-linux-gnu (2.35.1-2cross2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libgomp1-mipsel-cross (10.2.0-17cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up linux-libc-dev-mipsel-cross (5.7.10-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-4) ... Setting up libelf1:amd64 (0.182-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.2) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:mipsel (9.3.0-18) ... Setting up cpp-10-mipsel-linux-gnu (10.2.0-17cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-18) ... Setting up g++-10 (10.2.0-18) ... Setting up libc6-dev-mipsel-cross (2.31-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-mipsel-cross (10.2.0-17cross1) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10.2.0-17cross1) ... Setting up perl (5.32.0-5) ... Setting up libgcc-10-dev-mipsel-cross (10.2.0-17cross1) ... Setting up cpp-mipsel-linux-gnu (4:10.2.0-1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up gcc-10-mipsel-linux-gnu (10.2.0-17cross1) ... Setting up libstdc++6-mipsel-cross (10.2.0-17cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++-10-dev-mipsel-cross (10.2.0-17cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mipsel-linux-gnu (4:10.2.0-1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up g++-10-mipsel-linux-gnu (10.2.0-17cross1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mipsel-linux-gnu (4:10.2.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.17-1) ... Setting up libgcc-s1:mipsel (10.2.0-18) ... Setting up libcrypt-dev:mipsel (1:4.4.17-1) ... Setting up libtirpc3:mipsel (1.2.6-3) ... Setting up dh-autoreconf (19) ... Setting up libtirpc-dev:mipsel (1.2.6-3) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up debhelper (13.2.1) ... Setting up libnss-nisplus:mipsel (1.3-4) ... Setting up libnss-nis:mipsel (3.1-4) ... Setting up libc6:mipsel (2.31-4) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.31-4) ... Setting up libstdc++6:mipsel (10.2.0-18) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up libssl1.1:mipsel (1.1.1h-1) ... Setting up libcom-err2:mipsel (1.45.6-1) ... Setting up libgomp1:mipsel (10.2.0-18) ... Setting up libkrb5support0:mipsel (1.18.3-4) ... Setting up libatomic1:mipsel (10.2.0-18) ... Setting up libk5crypto3:mipsel (1.18.3-4) ... Setting up libkrb5-3:mipsel (1.18.3-4) ... Setting up libgcc-9-dev:mipsel (9.3.0-18) ... Setting up libgssapi-krb5-2:mipsel (1.18.3-4) ... Setting up libstdc++-9-dev:mipsel (9.3.0-18) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-3 dpkg-dev_1.20.5 g++-10_10.2.0-18 gcc-10_10.2.0-18 libc6-dev_2.31-4 libstdc++-10-dev_10.2.0-18 libstdc++-10-dev-mipsel-cross_10.2.0-17cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-18 libstdc++6-mipsel-cross_10.2.0-17cross1 linux-libc-dev_5.9.9-1 Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-3 binutils-common_2.35.1-3 binutils-mipsel-linux-gnu_2.35.1-2cross2 binutils-x86-64-linux-gnu_2.35.1-3 bsdextrautils_2.36.1-1 bsdutils_1:2.36.1-1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-18 cpp-10-mipsel-linux-gnu_10.2.0-17cross1 cpp-8_8.4.0-4 cpp-mipsel-linux-gnu_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-mipsel_12.8 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-1 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.0-18 g++-10-mipsel-linux-gnu_10.2.0-17cross1 g++-mipsel-linux-gnu_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.0-18 gcc-10-base_10.2.0-18 gcc-10-cross-base-mipsen_10.2.0-17cross1 gcc-10-mipsel-linux-gnu_10.2.0-17cross1 gcc-10-mipsel-linux-gnu-base_10.2.0-17cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-18 gcc-mipsel-linux-gnu_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-18 libatomic1_10.2.0-18 libatomic1-mipsel-cross_10.2.0-17cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-3 libblkid1_2.36.1-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4 libc-dev-bin_2.31-4 libc6_2.31-4 libc6-dev_2.31-4 libc6-dev-mipsel-cross_2.31-2cross1 libc6-mipsel-cross_2.31-2cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.0-18 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-3 libctf0_2.35.1-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.182-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-1 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-18 libgcc-10-dev-mipsel-cross_10.2.0-17cross1 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-18 libgcc-s1-mipsel-cross_10.2.0-17cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-18 libgomp1-mipsel-cross_10.2.0-17cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-4 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-18 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.0-18 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2+20201114-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libquadmath0_10.2.0-18 libseccomp2_2.5.0-3 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36.1-1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-18 libstdc++-10-dev-mipsel-cross_10.2.0-17cross1 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-18 libstdc++6-mipsel-cross_10.2.0-17cross1 libsub-override-perl_0.09-2 libsystemd0_246.6-4 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-18 libubsan1_10.2.0-18 libuchardet0_0.0.7-1 libudev1_246.6-4 libunistring2_0.9.10-4 libuuid1_2.36.1-1 libxml-libxml-perl_2.0134+dfsg-2+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6.2 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.9.9-1 linux-libc-dev-mipsel-cross_5.7.10-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.0-5 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 ucf_3.0043 util-linux_2.36.1-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kraken2 Binary: kraken2 Architecture: any Version: 2.1.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.ccb.jhu.edu/software/kraken2/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kraken2 Vcs-Git: https://salsa.debian.org/med-team/kraken2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: kraken2 deb science optional arch=any Checksums-Sha1: d87b52983028436582ea0518b7dde6557a8b38d3 193878 kraken2_2.1.1.orig.tar.gz 8bab97bc8160fafab265b0f739dda335abf9ef77 339824 kraken2_2.1.1-1.debian.tar.xz Checksums-Sha256: 8f3e928cdb32b9e8e6f55b44703d1557b2a5fc3f30f63e8d16e465e19a81dee4 193878 kraken2_2.1.1.orig.tar.gz f087fa8b75169186d24362a599f3249368e69102f8205359760004a145c223e0 339824 kraken2_2.1.1-1.debian.tar.xz Files: 4eedbc664d0dfa12f2df899bdbd36fa8 193878 kraken2_2.1.1.orig.tar.gz dab8e1fb44ba42709e551a4091527fd4 339824 kraken2_2.1.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+tqRIUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGuEA//TvaA2SGeRezwJdUvrDnKsk/2xT0w XHvW295EDEAml59untxPAuAD++Ryf/owBduoPG6v0fkuXusuqPnDNVXhxrwlu/Th YGHSc9CumFnNAwiQQzSkgdhXkz8R6lu0wkUoKMITyzWKShB3hPQLgKDlnqF/gOtU gpavZG8Kilisf5Twn0wmY6PslJwDWoRoM8nzPnS4qZYFn/NdAr4c4OkskaGF007L ZM24RwwruRwzpDxNPZ0cQ75wksOm2uKqd0YfWeA/moEgETPE1cNrDhha0BjA1OEO J3vFsRq++UM7SHcpWFa9GJxKiqPQXJ22R9m3FnP4ruEEW0Qhx+o/YHODaWY7GHDT xtquCrwzFnarcYS9gHA8VJ1t5vjLEyhfcAYNvTWkwjxkVOd6Dp8XtSenMCw2ztZB mfq7Df9ZP4ItPIwDb3myZjsAZXS07zHkNRUPooDYD4aUT2IseAhPYFtGFYT358li 0RgPoENgBgQc40HyhmI5CB/J6Xzh02uMX3hhQ2GLo0PRMS2/j8WUmEpeP8Ykzdqe YOa6Ef03NwMzQw1zoT79pD8qSLFe5F8fawSHt89onPw+YB1ZzVDe1/J0cW2WMLQQ r07Lc2JAt94KlCklUjOe9UKjgB8lKtJ9OE0AoxphWaiPi0j2kOw+19b2Y0yiKc0P sgeHzaQUehzLG40= =yTNF -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.gAYAxURY/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 12 21:28:50 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kraken2_2.1.1-1.dsc dpkg-source: info: extracting kraken2 in /<> dpkg-source: info: unpacking kraken2_2.1.1.orig.tar.gz dpkg-source: info: unpacking kraken2_2.1.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening+debug_options.patch dpkg-source: info: applying fix_reading_fasta.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-e6d25cb6-8ec1-49e7-8f59-f2cea71fc502 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j1 clean make[1]: Entering directory '/<>/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=mipsel-linux-gnu-pkg-config CXX=mipsel-linux-gnu-g\+\+ CC=mipsel-linux-gnu-gcc make[1]: Entering directory '/<>/src' mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmscanner.o mmscanner.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o omp_hack.o omp_hack.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utilities.o utilities.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build_db.o build_db.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmap_file.o mmap_file.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compact_hash.o compact_hash.cc compact_hash.cc: In constructor ‘kraken2::CompactHashTable::CompactHashTable(size_t, size_t, size_t)’: compact_hash.cc:30:27: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 30 | } catch (std::bad_alloc ex) { | ^~ mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o taxonomy.o taxonomy.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reports.o reports.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hyperloglogplus.o hyperloglogplus.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o aa_translate.o aa_translate.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dump_table.o dump_table.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lookup_accession_numbers.o lookup_accession_numbers.cc mipsel-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o make[1]: Leaving directory '/<>/src' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_installdirs -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- KRAKEN2_DIR=/<>/debian/kraken2/usr/lib/kraken2 cd src && make -j1 install DESTDIR=/<>/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/<>/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/<>/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<>/debian/kraken2/usr/lib/kraken2/ make[2]: Leaving directory '/<>/src' ./install_kraken2.sh /<>/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/<>/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers /<>/debian/kraken2/usr/lib/kraken2/ make[2]: Leaving directory '/<>/src' Kraken 2 installation complete. To make things easier for you, you may want to copy/symlink the following files into a directory in your PATH: /<>/debian/kraken2/usr/lib/kraken2/kraken2 /<>/debian/kraken2/usr/lib/kraken2/kraken2-build /<>/debian/kraken2/usr/lib/kraken2/kraken2-inspect make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for file in /<>/debian/kraken2/usr/lib/kraken2/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken2/`basename ${file}` /<>/debian/kraken2/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -a -O--sourcedirectory=src dh_strip -a -a -O--sourcedirectory=src dh_makeshlibs -a -a -O--sourcedirectory=src dh_shlibdeps -a -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'kraken2' in '../kraken2_2.1.1-1_mipsel.deb'. dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.1-1_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kraken2_2.1.1-1_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-24T11:30:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kraken2_2.1.1-1_mipsel.changes: ------------------------------- Format: 1.8 Date: Thu, 12 Nov 2020 23:26:29 +0530 Source: kraken2 Binary: kraken2 kraken2-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 2.1.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: kraken2 - taxonomic classification system using exact k-mer matches Changes: kraken2 (2.1.1-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 44094de3a8c80eb21ab785c0ebe387b4d85ef5d2 1891080 kraken2-dbgsym_2.1.1-1_mipsel.deb 61b7e4cb8a8cde7d0566e6514998673c91b3a4f4 4975 kraken2_2.1.1-1_mipsel.buildinfo 963bc70c6122e1a89e3fe8653387215ef351cb7d 827964 kraken2_2.1.1-1_mipsel.deb Checksums-Sha256: 529bd9d46f9bc445a72a8a2dc0a6045c2755c78705fb5397acc56e35a44a89ca 1891080 kraken2-dbgsym_2.1.1-1_mipsel.deb cc5ba531107bd1ae465a35072c254695a98fdcdf2002b8a4dab5235f00a510f5 4975 kraken2_2.1.1-1_mipsel.buildinfo 093cca365a2483fe5d0d34959defe71a6da5f167f4216b62b2d283c12f6e84b1 827964 kraken2_2.1.1-1_mipsel.deb Files: 4688295f71a9094d2939bbb3698b8ba4 1891080 debug optional kraken2-dbgsym_2.1.1-1_mipsel.deb 34cfd8550361a32acc7634a3ed7f5feb 4975 science optional kraken2_2.1.1-1_mipsel.buildinfo 474b06b2ac3cbe231730daf282a665cc 827964 science optional kraken2_2.1.1-1_mipsel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kraken2 Binary: kraken2 kraken2-dbgsym Architecture: mipsel Version: 2.1.1-1 Checksums-Md5: 4688295f71a9094d2939bbb3698b8ba4 1891080 kraken2-dbgsym_2.1.1-1_mipsel.deb 474b06b2ac3cbe231730daf282a665cc 827964 kraken2_2.1.1-1_mipsel.deb Checksums-Sha1: 44094de3a8c80eb21ab785c0ebe387b4d85ef5d2 1891080 kraken2-dbgsym_2.1.1-1_mipsel.deb 963bc70c6122e1a89e3fe8653387215ef351cb7d 827964 kraken2_2.1.1-1_mipsel.deb Checksums-Sha256: 529bd9d46f9bc445a72a8a2dc0a6045c2755c78705fb5397acc56e35a44a89ca 1891080 kraken2-dbgsym_2.1.1-1_mipsel.deb 093cca365a2483fe5d0d34959defe71a6da5f167f4216b62b2d283c12f6e84b1 827964 kraken2_2.1.1-1_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 24 Nov 2020 11:30:54 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1~rc3-1), binutils (= 2.35.1-3), binutils-common (= 2.35.1-3), binutils-x86-64-linux-gnu (= 2.35.1-3), bsdextrautils (= 2.36.1-1), bsdutils (= 1:2.36.1-1), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.0-18), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.2.1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.0-18), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.0-18), gcc-10-base (= 10.2.0-18), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-18), libatomic1 (= 10.2.0-18), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1), libbinutils (= 2.35.1-3), libblkid1 (= 2.36.1-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-4), libc-dev-bin (= 2.31-4), libc6 (= 2.31-4), libc6-dev (= 2.31-4), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.0-18), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-3), libctf0 (= 2.35.1-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.2.1), libdpkg-perl (= 1.20.5), libelf1 (= 0.182-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-18), libgcc-s1 (= 10.2.0-18), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-1), libgmp10 (= 2:6.2.1+dfsg-1), libgomp1 (= 10.2.0-18), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-18), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblsan0 (= 10.2.0-18), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnss-nis (= 3.1-4), libnss-nisplus (= 1.3-4), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.0-18), libseccomp2 (= 2.5.0-3), libselinux1 (= 3.1-2+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36.1-1), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.0-18), libstdc++6 (= 10.2.0-18), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-4), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-18), libubsan1 (= 10.2.0-18), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-4), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.9-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.30+dfsg-7), util-linux (= 2.36.1-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605203789" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kraken2-dbgsym_2.1.1-1_mipsel.deb --------------------------------- new Debian package, version 2.0. size 1891080 bytes: control archive=800 bytes. 536 bytes, 12 lines control 614 bytes, 6 lines md5sums Package: kraken2-dbgsym Source: kraken2 Version: 2.1.1-1 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1982 Depends: kraken2 (= 2.1.1-1) Section: debug Priority: optional Description: debug symbols for kraken2 Build-Ids: 10857428b8a89b33eccf99a9a94df2b8df3abe74 32de92231df3be54d34396f23d9e6e338dc4e755 34ba7b91f851349c8dbcaecda38cb7c50ea4f801 6e9660330effe031a838c2f6eb3a240a2f4e241e df51366fb587ce33edac4544fb56745cd179cf51 drwxr-xr-x root/root 0 2020-11-12 17:56 ./ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/10/ -rw-r--r-- root/root 426076 2020-11-12 17:56 ./usr/lib/debug/.build-id/10/857428b8a89b33eccf99a9a94df2b8df3abe74.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 437708 2020-11-12 17:56 ./usr/lib/debug/.build-id/32/de92231df3be54d34396f23d9e6e338dc4e755.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 102940 2020-11-12 17:56 ./usr/lib/debug/.build-id/34/ba7b91f851349c8dbcaecda38cb7c50ea4f801.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 699020 2020-11-12 17:56 ./usr/lib/debug/.build-id/6e/9660330effe031a838c2f6eb3a240a2f4e241e.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 101348 2020-11-12 17:56 ./usr/lib/debug/.build-id/df/51366fb587ce33edac4544fb56745cd179cf51.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/debug/.dwz/mipsel-linux-gnu/ -rw-r--r-- root/root 242948 2020-11-12 17:56 ./usr/lib/debug/.dwz/mipsel-linux-gnu/kraken2.debug drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/share/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-12 17:56 ./usr/share/doc/kraken2-dbgsym -> kraken2 kraken2_2.1.1-1_mipsel.deb -------------------------- new Debian package, version 2.0. size 827964 bytes: control archive=3016 bytes. 2364 bytes, 41 lines control 4066 bytes, 54 lines md5sums Package: kraken2 Version: 2.1.1-1 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 1821 Depends: libc6 (>= 2.29), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libstdc++6 (>= 9), ncbi-blast+ Section: science Priority: optional Homepage: https://www.ccb.jhu.edu/software/kraken2/ Description: taxonomic classification system using exact k-mer matches Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. This classifier matches each k-mer within a query sequence to the lowest common ancestor (LCA) of all genomes containing the given k-mer. The k-mer assignments inform the classification algorithm. [see: Kraken 1's Webpage for more details]. . Kraken 2 provides significant improvements to Kraken 1, with faster database build times, smaller database sizes, and faster classification speeds. These improvements were achieved by the following updates to the Kraken classification program: . 1. Storage of Minimizers: Instead of storing/querying entire k-mers, Kraken 2 stores minimizers (l-mers) of each k-mer. The length of each l-mer must be ≤ the k-mer length. Each k-mer is treated by Kraken 2 as if its LCA is the same as its minimizer's LCA. 2. Introduction of Spaced Seeds: Kraken 2 also uses spaced seeds to store and query minimizers to improve classification accuracy. 3. Database Structure: While Kraken 1 saved an indexed and sorted list of k-mer/LCA pairs, Kraken 2 uses a compact hash table. This hash table is a probabilistic data structure that allows for faster queries and lower memory requirements. However, this data structure does have a <1% chance of returning the incorrect LCA or returning an LCA for a non-inserted minimizer. Users can compensate for this possibility by using Kraken's confidence scoring thresholds. 4. Protein Databases: Kraken 2 allows for databases built from amino acid sequences. When queried, Kraken 2 performs a six-frame translated search of the query sequences against the database. 5. 16S Databases: Kraken 2 also provides support for databases not based on NCBI's taxonomy. Currently, these include the 16S databases: Greengenes, SILVA, and RDP. drwxr-xr-x root/root 0 2020-11-12 17:56 ./ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/bin/ lrwxrwxrwx root/root 0 2020-11-12 17:56 ./usr/bin/kraken2 -> ../lib/kraken2/kraken2 lrwxrwxrwx root/root 0 2020-11-12 17:56 ./usr/bin/kraken2-build -> ../lib/kraken2/kraken2-build lrwxrwxrwx root/root 0 2020-11-12 17:56 ./usr/bin/kraken2-inspect -> ../lib/kraken2/kraken2-inspect drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-12 17:56 ./usr/lib/kraken2/ -rwxr-xr-x root/root 959 2020-11-12 17:56 ./usr/lib/kraken2/16S_gg_installation.sh -rwxr-xr-x root/root 956 2020-11-12 17:56 ./usr/lib/kraken2/16S_rdp_installation.sh -rwxr-xr-x root/root 1193 2020-11-12 17:56 ./usr/lib/kraken2/16S_silva_installation.sh -rwxr-xr-x root/root 947 2020-11-12 17:56 ./usr/lib/kraken2/add_to_library.sh -rwxr-xr-x root/root 123252 2020-11-12 17:56 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./usr/share/man/man1/kraken2-inspect.1.gz -rw-r--r-- root/root 945 2020-11-12 17:56 ./usr/share/man/man1/kraken2.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. 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[12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.103.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7539 kB in 0s (30.6 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21152 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1~rc3-1_all.deb ... Unpacking readline-common (8.1~rc3-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1~rc3-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1~rc3-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.33.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.33.0-1) ... 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Unpacking sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b4) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.00-4+b1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.25-1+b1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-25) ... Setting up libsqlite3-0:amd64 (3.33.0-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up lzip (1.21-8) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1~rc3-1) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.05-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b6) ... Setting up libreadline8:amd64 (8.1~rc3-1) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004003-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.103.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 28944 Build-Time: 41 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 27 Job: kraken2_2.1.1-1 Lintian: pass Machine Architecture: amd64 Package: kraken2 Package-Time: 82 Source-Version: 2.1.1-1 Space: 28944 Status: successful Version: 2.1.1-1 -------------------------------------------------------------------------------- Finished at 2020-11-24T11:30:54Z Build needed 00:01:22, 28944k disk space