sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | kraken2 2.1.2-1 (armhf) Thu, 02 Sep 2021 17:49:02 +0000 | +==============================================================================+ Package: kraken2 Version: 2.1.2-1 Source Version: 2.1.2-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-fd42736f-7fd2-4cbd-998e-9b10f260c067' with '<>' I: NOTICE: Log filtering will replace 'build/kraken2-7irlgd/resolver-z0jW8E' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-02-1403.17-F-2021-09-02-0801.14.pdiff [31.7 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-09-02-1403.17-F-2021-09-02-0801.14.pdiff [31.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-02-1403.17-F-2021-09-02-0801.14.pdiff [21.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-09-02-1403.17-F-2021-09-02-0801.14.pdiff [21.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8459 kB] Fetched 8805 kB in 4s (2210 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 534 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.2-1 (dsc) [1965 B] Get:2 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.2-1 (tar) [196 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main kraken2 2.1.2-1 (diff) [336 kB] Fetched 534 kB in 0s (35.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/kraken2-7irlgd/kraken2-2.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/kraken2-7irlgd' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [490 B] Fetched 1851 B in 0s (73.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-cross-base gcc-11-base:armhf gcc-11-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf glibc-doc manpages-dev:armhf gnupg git bzr krb5-doc:armhf krb5-user:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armhf libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-cross-base gcc-11-base:armhf gcc-11-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 110 newly installed, 0 to remove and 0 not upgraded. Need to get 214 MB of archives. After this operation, 916 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-1 [142 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-5 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-5 [4125 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armhf gcc-11-base armhf 11.2.0-3 [204 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.4.0-2 [200 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.4-1 [819 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.37-5 [2864 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.25-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-17 [2255 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.3.0-8 [1750 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.3.0-8 [9435 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.3.0-8cross1 [205 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [44.1 MB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.1-1 [16.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.3.0-8cross1 [200 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-2cross1 [200 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-17cross3 [1095 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 11.2.0-2cross1 [36.4 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 11.2.0-2cross1 [86.5 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 11.2.0-2cross1 [6672 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 11.2.0-2cross1 [2059 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 11.2.0-2cross1 [439 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 11.2.0-2cross1 [795 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.3.0-8cross1 [690 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [50.4 MB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.1-1 [1468 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.10.46-4cross3 [1436 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-17cross3 [1768 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.3.0-8cross1 [1764 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.3.0-8cross1 [47.2 MB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.1-1 [1184 B] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-3 [696 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-2 [59.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.5.1 [192 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.185-2 [172 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.5.1 [1056 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 11.2.0-3 [36.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-17 [2330 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.4.0-2 [2780 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 11.2.0-3 [6904 B] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.46-4 [1330 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.25-1 [97.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.25-1 [113 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.46.4-1 [74.4 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-7 [62.5 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-7 [110 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1l-1 [1311 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-7 [319 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [143 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.2-2 [72.7 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.2-2 [182 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-17 [1799 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 11.2.0-3 [88.7 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 11.2.0-3 [480 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 11.2.0-3 [797 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.4.0-2 [660 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.4.0-2 [1766 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 214 MB in 2s (134 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10519 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-1_amd64.deb ... Unpacking bsdextrautils (2.37.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-5_all.deb ... Unpacking perl-modules-5.32 (5.32.1-5) ... 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Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up linux-libc-dev-armhf-cross (5.10.46-4cross3) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-5) ... Setting up gcc-10-cross-base (10.3.0-8cross1) ... Setting up gcc-11-cross-base (11.2.0-2cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.25-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-17) ... Setting up binutils-arm-linux-gnueabihf (2.37-5) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-3) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-10-arm-linux-gnueabihf-base:amd64 (10.3.0-8cross1) ... Setting up gcc-9-base:armhf (9.4.0-2) ... Setting up libgomp1-armhf-cross (11.2.0-2cross1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-8) ... Setting up g++-10 (10.3.0-8) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-armhf-cross (11.2.0-2cross1) ... Setting up libc6-dev-armhf-cross (2.31-17cross3) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-armhf-cross (11.2.0-2cross1) ... Setting up perl (5.32.1-5) ... Setting up libstdc++6-armhf-cross (11.2.0-2cross1) ... Setting up libasan6-armhf-cross (11.2.0-2cross1) ... Setting up cpp-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up libubsan1-armhf-cross (11.2.0-2cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up autoconf (2.71-2) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-10-dev-armhf-cross (10.3.0-8cross1) ... Setting up cpp-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up automake (1:1.16.4-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up libstdc++-10-dev-armhf-cross (10.3.0-8cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up g++-10-arm-linux-gnueabihf (10.3.0-8cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.2.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up debhelper (13.5.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libgcc-s1:armhf (11.2.0-3) ... Setting up libc6:armhf (2.31-17) ... Setting up libstdc++6:armhf (11.2.0-3) ... Setting up libkeyutils1:armhf (1.6.1-2) ... Setting up libssl1.1:armhf (1.1.1l-1) ... Setting up libcrypt1:armhf (1:4.4.25-1) ... Setting up libcom-err2:armhf (1.46.4-1) ... Setting up libgomp1:armhf (11.2.0-3) ... Setting up libkrb5support0:armhf (1.18.3-7) ... Setting up libasan5:armhf (9.4.0-2) ... Setting up libatomic1:armhf (11.2.0-3) ... Setting up libk5crypto3:armhf (1.18.3-7) ... Setting up libubsan1:armhf (11.2.0-3) ... Setting up libcrypt-dev:armhf (1:4.4.25-1) ... Setting up libkrb5-3:armhf (1.18.3-7) ... Setting up libgcc-9-dev:armhf (9.4.0-2) ... Setting up libgssapi-krb5-2:armhf (1.18.3-7) ... Setting up libtirpc3:armhf (1.3.2-2) ... Setting up libtirpc-dev:armhf (1.3.2-2) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.31-17) ... Setting up libstdc++-9-dev:armhf (9.4.0-2) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.31-17) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37-5 dpkg-dev_1.20.9 g++-10_10.3.0-8 gcc-10_10.3.0-8 libc6-dev_2.31-17 libstdc++-10-dev_10.3.0-8 libstdc++-10-dev-armhf-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-3 libstdc++6-armhf-cross_11.2.0-2cross1 linux-libc-dev_5.10.46-4 Package versions: adduser_3.118 apt_2.3.8 autoconf_2.71-2 automake_1:1.16.4-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.51 bash_5.1-3+b1 binutils_2.37-5 binutils-arm-linux-gnueabihf_2.37-5 binutils-common_2.37-5 binutils-x86-64-linux-gnu_2.37-5 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.3.0-8 cpp-10-arm-linux-gnueabihf_10.3.0-8cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabihf_4:10.2.1-1 cross-config_2.6.18+nmu2 crossbuild-essential-armhf_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.1 debian-archive-keyring_2021.1.1 debianutils_5.4-3 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fdisk_2.37.2-1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1 g++-10_10.3.0-8 g++-10-arm-linux-gnueabihf_10.3.0-8cross1 g++-arm-linux-gnueabihf_4:10.2.1-1 gcc_4:10.2.1-1 gcc-10_10.3.0-8 gcc-10-arm-linux-gnueabihf_10.3.0-8cross1 gcc-10-arm-linux-gnueabihf-base_10.3.0-8cross1 gcc-10-base_10.3.0-8 gcc-10-cross-base_10.3.0-8cross1 gcc-11-base_11.2.0-3 gcc-11-cross-base_11.2.0-2cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-2 gcc-arm-linux-gnueabihf_4:10.2.1-1 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.8 libarchive-zip-perl_1.68-1 libasan5_9.4.0-2 libasan6_11.2.0-3 libasan6-armhf-cross_11.2.0-2cross1 libatomic1_11.2.0-3 libatomic1-armhf-cross_11.2.0-2cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5 libblkid1_2.37.2-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-17 libc-dev-bin_2.31-17 libc6_2.31-17 libc6-armhf-cross_2.31-17cross3 libc6-dev_2.31-17 libc6-dev-armhf-cross_2.31-17cross3 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-3 libcom-err2_1.46.4-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.25-1 libcrypt1_1:4.4.25-1 libctf-nobfd0_2.37-5 libctf0_2.37-5 libdb5.3_5.3.28+dfsg1-0.8 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libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.2+20201114-4 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libquadmath0_11.2.0-3 libreadline8_8.1-2 libseccomp2_2.5.1-1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b2 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-8 libstdc++-10-dev-armhf-cross_10.3.0-8cross1 libstdc++-9-dev_9.4.0-2 libstdc++6_11.2.0-3 libstdc++6-armhf-cross_11.2.0-2cross1 libsub-override-perl_0.09-2 libsystemd0_247.9-1 libtasn1-6_4.17.0-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 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xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kraken2 Binary: kraken2 Architecture: any Version: 2.1.2-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.ccb.jhu.edu/software/kraken2/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/kraken2 Vcs-Git: https://salsa.debian.org/med-team/kraken2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: kraken2 deb science optional arch=any Checksums-Sha1: df3e954b8c2c13f0faf55874850a15e51871e19e 196259 kraken2_2.1.2.orig.tar.gz db75947cbc9d0c637c6facefd5f1b26e356a9fb2 336272 kraken2_2.1.2-1.debian.tar.xz Checksums-Sha256: e5f431e8bc3d5493a79e1d8125f4aacbad24f9ea2cc9657b66da06a32bef6ff3 196259 kraken2_2.1.2.orig.tar.gz fc26a27475708af2c396cfa344b432dee8cc5b778e56b7cbde3b9b3f35895568 336272 kraken2_2.1.2-1.debian.tar.xz Files: 29b3bec1b29444d4c7322d448f06f13b 196259 kraken2_2.1.2.orig.tar.gz 99cb3ddfc0f3ef93db51299ac6937f04 336272 kraken2_2.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZF5cUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFUNQ//SMPlHKbk5/rJnqRDuS2Zgw5W4WY4 QmcctJMc+13XgUVmXQVhTAlbtToNuh/FJEzis36a48Dwmr9v3F8l3XdmdCUWn9Gv gkZbx9NIrMXhdXPsXipO1XzSYvo5Z5tUjkxL/XShkV6AhewObya16Ur9He/Y+ioN aDmt19QdhPEwTYVmXTjjIpJEdLK9/v0TLHaOPDbHNb/7Yra2MqzyzzoT0eKt/jdU 8qi5Eh8wrjIMp6bfoLN5uQSPeqyZt1GeS+nkcBgbppd2PIahjI5IjFgiW8E1hfku XJiVNc5qWoNHvwBoTUJhlf+NYFajOCfQS8LWNak3xwlvEKU3n0ncDmN4z39YkP5U 84JNpRfLumOYcNfFslu9o0irg7dx6TbDNfPs9zb62WlWeltWXgf1Ekios0GvgDeP Q6IPustSXXI5SbGp/vA+/xXI6bOdm/XyrY4BnNEROsM1JB9BWVJdbcE7CQotb7eh 4vjIoNgVpgKDgGihvMIF0e9KtAVAkVWDrV87ukCFXwHLmc/R88UhqrouO8+LkuUy kjkGIFtNvEsgukTbf1m7DzERHWcCQE0XC00bh+sodEL81APAm3RW9rxQEVEIvnQV y6b5hkxTk4YKY766132+ehEj1pUUHwecKfGipKyeoQcYowqz1qKUIS1p4cTL8YTL NsAj9L6cFE9yDWs= =3czT -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.vTakHe22/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 15 13:33:11 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kraken2_2.1.2-1.dsc dpkg-source: info: extracting kraken2 in /<> dpkg-source: info: unpacking kraken2_2.1.2.orig.tar.gz dpkg-source: info: unpacking kraken2_2.1.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening+debug_options.patch dpkg-source: info: applying fix_reading_fasta.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-fd42736f-7fd2-4cbd-998e-9b10f260c067 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j1 clean make[1]: Entering directory '/<>/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>/src' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmscanner.o mmscanner.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:72, from /usr/arm-linux-gnueabihf/include/c++/10/queue:61, from kraken2_headers.h:15, from mmscanner.h:10, from mmscanner.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kraken2::MinimizerData&}; _Tp = kraken2::MinimizerData; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:67, from /usr/arm-linux-gnueabihf/include/c++/10/queue:61, from kraken2_headers.h:15, from mmscanner.h:10, from mmscanner.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In member function ‘uint64_t* kraken2::MinimizerScanner::NextMinimizer()’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o omp_hack.o omp_hack.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utilities.o utilities.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build_db.o build_db.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from build_db.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from build_db.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1844 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘_Z15ProcessSequenceRK7OptionsRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEyRN7kraken216CompactHashTableERKNSA_8TaxonomyE._omp_fn.1’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1979 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1980 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1981 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1896 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmap_file.o mmap_file.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compact_hash.o compact_hash.cc compact_hash.cc: In constructor ‘kraken2::CompactHashTable::CompactHashTable(size_t, size_t, size_t)’: compact_hash.cc:30:27: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 30 | } catch (std::bad_alloc ex) { | ^~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o taxonomy.o taxonomy.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/map:60, from kraken2_headers.h:14, from mmap_file.h:10, from taxonomy.h:10, from taxonomy.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/10/map:61, from kraken2_headers.h:14, from mmap_file.h:10, from taxonomy.h:10, from taxonomy.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h: In member function ‘void kraken2::NCBITaxonomy::MarkNode(uint64_t)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h: In constructor ‘kraken2::NCBITaxonomy::NCBITaxonomy(std::string, std::string)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/map:60, from kraken2_headers.h:14, from mmap_file.h:10, from taxonomy.h:10, from taxonomy.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long long unsigned int>; _KeyOfValue = std::_Select1st, long long unsigned int> >; _Compare = std::less >; _Alloc = std::allocator, long long unsigned int> >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/map:61, from kraken2_headers.h:14, from mmap_file.h:10, from taxonomy.h:10, from taxonomy.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h: In member function ‘void kraken2::NCBITaxonomy::ConvertToKrakenTaxonomy(const char*)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:520:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, long long unsigned int>, std::_Select1st, long long unsigned int> >, std::less >, std::allocator, long long unsigned int> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from classify.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = OutputData; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:72, from /usr/arm-linux-gnueabihf/include/c++/10/queue:61, from kraken2_headers.h:15, from classify.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OutputData&}; _Tp = OutputData; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:67, from /usr/arm-linux-gnueabihf/include/c++/10/queue:61, from kraken2_headers.h:15, from classify.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In function ‘kraken2::taxid_t ClassifySequence(kraken2::Sequence&, kraken2::Sequence&, std::ostringstream&, kraken2::KeyValueStore*, kraken2::Taxonomy&, kraken2::IndexOptions&, Options&, ClassificationStats&, kraken2::MinimizerScanner&, std::vector&, kraken2::taxon_counts_t&, std::vector >&, kraken2::taxon_counters_t&)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In function ‘_Z12ProcessFilesPKcS0_PN7kraken213KeyValueStoreERNS1_8TaxonomyERNS1_12IndexOptionsER7OptionsR19ClassificationStatsR16OutputStreamDataRSt13unordered_mapIyNS1_10ReadCountsI20HyperLogLogPlusMinusIyEEESt4hashIyESt8equal_toIyESaISt4pairIKySI_EEE._omp_fn.0’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reports.o reports.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from reports.h:12, from reports.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&):: >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from reports.h:12, from reports.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&):: >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&):: >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1844 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void kraken2::MpaReportDFS(kraken2::taxid_t, std::ofstream&, bool, kraken2::Taxonomy&, kraken2::taxon_counts_t&, std::vector >&)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1979 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1980 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1981 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1896 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from reports.h:12, from reports.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/10/algorithm:62, from kraken2_headers.h:1, from reports.h:12, from reports.cc:7: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1950 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1844 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h: In function ‘void kraken2::KrakenReportDFS(uint32_t, std::ofstream&, bool, bool, kraken2::Taxonomy&, kraken2::taxon_counters_t&, kraken2::taxon_counters_t&, uint64_t, char, int, int)’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1979 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1980 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1981 | __comp); | ~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1896 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hyperloglogplus.o hyperloglogplus.cc In file included from /usr/arm-linux-gnueabihf/include/c++/10/vector:67, from /usr/arm-linux-gnueabihf/include/c++/10/queue:61, from kraken2_headers.h:15, from hyperloglogplus.h:16, from hyperloglogplus.cc:8: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/10/bits/stl_vector.h:625:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 625 | vector(initializer_list __l, | ^~~~~~ In file included from hyperloglogplus.cc:20: hyperloglogplus-bias.h: In function ‘void __static_initialization_and_destruction_0(int, int)’: hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 64 | }; | ^ hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:64:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 In file included from hyperloglogplus.cc:20: hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 97 | }; | ^ hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 hyperloglogplus-bias.h:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o aa_translate.o aa_translate.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dump_table.o dump_table.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o -Wl,-z,relro -Wl,-z,now arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lookup_accession_numbers.o lookup_accession_numbers.cc arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>/src' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_installdirs -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- KRAKEN2_DIR=/<>/debian/kraken2/usr/lib/kraken2 cd src && make -j1 install DESTDIR=/<>/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/<>/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/<>/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers "/<>/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/<>/src' ./install_kraken2.sh /<>/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/<>/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers "/<>/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/<>/src' Kraken 2 installation complete. To make things easier for you, you may want to copy/symlink the following files into a directory in your PATH: /<>/debian/kraken2/usr/lib/kraken2/kraken2 /<>/debian/kraken2/usr/lib/kraken2/kraken2-build /<>/debian/kraken2/usr/lib/kraken2/kraken2-inspect make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for file in /<>/debian/kraken2/usr/lib/kraken2/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken2/`basename ${file}` /<>/debian/kraken2/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -a -O--sourcedirectory=src dh_strip -a -a -O--sourcedirectory=src dh_makeshlibs -a -a -O--sourcedirectory=src dh_shlibdeps -a -a -O--sourcedirectory=src dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/estimate_capacity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/dump_table contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/build_db contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/lookup_accession_numbers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/kraken2/usr/lib/kraken2/classify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'kraken2' in '../kraken2_2.1.2-1_armhf.deb'. dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.2-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../kraken2_2.1.2-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-09-02T17:50:31Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kraken2_2.1.2-1_armhf.changes: ------------------------------ Format: 1.8 Date: Sun, 15 Aug 2021 18:51:26 +0530 Source: kraken2 Binary: kraken2 kraken2-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: kraken2 - taxonomic classification system using exact k-mer matches Changes: kraken2 (2.1.2-1) unstable; urgency=medium . * Team Upload. * d/watch: Fix watch regex * New upstream version 2.1.2 * d/p/hardening+debug_options.patch: Propagate more hardening flags * Declare compliance with policy 4.5.1 Checksums-Sha1: c539c7b4361372afb706c04656c4c5336716cfd2 1851504 kraken2-dbgsym_2.1.2-1_armhf.deb 858d68c16b34e072298c1d7c5805b502539d5561 4832 kraken2_2.1.2-1_armhf.buildinfo 2acc32100ed497b3a59d66700a526c86c347fd4b 810424 kraken2_2.1.2-1_armhf.deb Checksums-Sha256: 799297097b6456cab72229bfa2e33a6c16dee70aac695f17e8eb686e1b656daa 1851504 kraken2-dbgsym_2.1.2-1_armhf.deb a273662e40c23d13e5c9d8412b252c9072157f03f37ebe65ef9891b255089d0a 4832 kraken2_2.1.2-1_armhf.buildinfo 319a287b7aeb06846aeab1cbf1af41a263e6cdeae1238b608fe3be54bf6fd8a8 810424 kraken2_2.1.2-1_armhf.deb Files: d4efcc63556fd1cdfe1ab0dc391422ad 1851504 debug optional kraken2-dbgsym_2.1.2-1_armhf.deb 75b05e524f4554bdc86ca4636a878f57 4832 science optional kraken2_2.1.2-1_armhf.buildinfo 52f3ffc5d9d5dd954e0eb813968b9b36 810424 science optional kraken2_2.1.2-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: kraken2 Binary: kraken2 kraken2-dbgsym Architecture: armhf Version: 2.1.2-1 Checksums-Md5: d4efcc63556fd1cdfe1ab0dc391422ad 1851504 kraken2-dbgsym_2.1.2-1_armhf.deb 52f3ffc5d9d5dd954e0eb813968b9b36 810424 kraken2_2.1.2-1_armhf.deb Checksums-Sha1: c539c7b4361372afb706c04656c4c5336716cfd2 1851504 kraken2-dbgsym_2.1.2-1_armhf.deb 2acc32100ed497b3a59d66700a526c86c347fd4b 810424 kraken2_2.1.2-1_armhf.deb Checksums-Sha256: 799297097b6456cab72229bfa2e33a6c16dee70aac695f17e8eb686e1b656daa 1851504 kraken2-dbgsym_2.1.2-1_armhf.deb 319a287b7aeb06846aeab1cbf1af41a263e6cdeae1238b608fe3be54bf6fd8a8 810424 kraken2_2.1.2-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 02 Sep 2021 17:50:31 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.51), bash (= 5.1-3+b1), binutils (= 2.37-5), binutils-common (= 2.37-5), binutils-x86-64-linux-gnu (= 2.37-5), bsdextrautils (= 2.37.2-1), bsdutils (= 1:2.37.2-1), build-essential (= 12.9), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.3.0-8), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.5.1), debianutils (= 5.4-3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5), dpkg (= 1.20.9), dpkg-dev (= 1.20.9), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1), g++ (= 4:10.2.1-1), g++-10 (= 10.3.0-8), gcc (= 4:10.2.1-1), gcc-10 (= 10.3.0-8), gcc-10-base (= 10.3.0-8), gcc-11-base (= 11.2.0-3), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-6), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-3), libatomic1 (= 11.2.0-3), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.5-1), libaudit1 (= 1:3.0.5-1), libbinutils (= 2.37-5), libblkid1 (= 2.37.2-1), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-17), libc-dev-bin (= 2.31-17), libc6 (= 2.31-17), libc6-dev (= 2.31-17), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 11.2.0-3), libcom-err2 (= 1.46.4-1), libcrypt-dev (= 1:4.4.25-1), libcrypt1 (= 1:4.4.25-1), libctf-nobfd0 (= 2.37-5), libctf0 (= 2.37-5), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.260), libdebhelper-perl (= 13.5.1), libdpkg-perl (= 1.20.9), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-10-dev (= 10.3.0-8), libgcc-s1 (= 11.2.0-3), libgcrypt20 (= 1.8.7-6), libgdbm-compat4 (= 1.20-1), libgdbm6 (= 1.20-1), libgmp10 (= 2:6.2.1+dfsg-1), libgomp1 (= 11.2.0-3), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7), libisl23 (= 0.23-1), libitm1 (= 11.2.0-3), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-3), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.37.2-1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-10), libpam-modules-bin (= 1.4.0-10), libpam-runtime (= 1.4.0-10), libpam0g (= 1.4.0-10), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-5), libpipeline1 (= 1.5.3-1), libquadmath0 (= 11.2.0-3), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-1), libssl1.1 (= 1.1.1l-1), libstdc++-10-dev (= 10.3.0-8), libstdc++6 (= 11.2.0-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.9-1), libtinfo6 (= 6.2+20201114-4), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-3), libubsan1 (= 11.2.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 247.9-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-1), libxml2 (= 2.9.12+dfsg-3), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.46-4), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-4), ncurses-bin (= 6.2+20201114-4), patch (= 2.7.6-7), perl (= 5.32.1-5), perl-base (= 5.32.1-5), perl-modules-5.32 (= 5.32.1-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1629033686" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ kraken2-dbgsym_2.1.2-1_armhf.deb -------------------------------- new Debian package, version 2.0. size 1851504 bytes: control archive=808 bytes. 535 bytes, 12 lines control 617 bytes, 6 lines md5sums Package: kraken2-dbgsym Source: kraken2 Version: 2.1.2-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1946 Depends: kraken2 (= 2.1.2-1) Section: debug Priority: optional Description: debug symbols for kraken2 Build-Ids: 40d5c251b292281953d8f89c4ae02fb5e355be01 5b8e7e5684ad9e0b7aef36ce6882fcdca526a52d a7b728cb4955ef8aa2ba8328d209d54111ffea4b caa03ffad3cc8c3e326e22ebc48e36980af93635 e9964a9f8cfd8cb3d81e39f5022b1bb039bb0634 drwxr-xr-x root/root 0 2021-08-15 13:21 ./ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/40/ -rw-r--r-- root/root 428388 2021-08-15 13:21 ./usr/lib/debug/.build-id/40/d5c251b292281953d8f89c4ae02fb5e355be01.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/5b/ -rw-r--r-- root/root 680608 2021-08-15 13:21 ./usr/lib/debug/.build-id/5b/8e7e5684ad9e0b7aef36ce6882fcdca526a52d.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/a7/ -rw-r--r-- root/root 411448 2021-08-15 13:21 ./usr/lib/debug/.build-id/a7/b728cb4955ef8aa2ba8328d209d54111ffea4b.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 100116 2021-08-15 13:21 ./usr/lib/debug/.build-id/ca/a03ffad3cc8c3e326e22ebc48e36980af93635.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.build-id/e9/ -rw-r--r-- root/root 105504 2021-08-15 13:21 ./usr/lib/debug/.build-id/e9/964a9f8cfd8cb3d81e39f5022b1bb039bb0634.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 247236 2021-08-15 13:21 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/kraken2.debug drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-15 13:21 ./usr/share/doc/kraken2-dbgsym -> kraken2 kraken2_2.1.2-1_armhf.deb ------------------------- new Debian package, version 2.0. size 810424 bytes: control archive=3032 bytes. 2365 bytes, 41 lines control 4074 bytes, 54 lines md5sums Package: kraken2 Version: 2.1.2-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 1590 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libstdc++6 (>= 5.2), ncbi-blast+ Section: science Priority: optional Homepage: https://www.ccb.jhu.edu/software/kraken2/ Description: taxonomic classification system using exact k-mer matches Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. This classifier matches each k-mer within a query sequence to the lowest common ancestor (LCA) of all genomes containing the given k-mer. The k-mer assignments inform the classification algorithm. [see: Kraken 1's Webpage for more details]. . Kraken 2 provides significant improvements to Kraken 1, with faster database build times, smaller database sizes, and faster classification speeds. These improvements were achieved by the following updates to the Kraken classification program: . 1. Storage of Minimizers: Instead of storing/querying entire k-mers, Kraken 2 stores minimizers (l-mers) of each k-mer. The length of each l-mer must be ≤ the k-mer length. Each k-mer is treated by Kraken 2 as if its LCA is the same as its minimizer's LCA. 2. Introduction of Spaced Seeds: Kraken 2 also uses spaced seeds to store and query minimizers to improve classification accuracy. 3. Database Structure: While Kraken 1 saved an indexed and sorted list of k-mer/LCA pairs, Kraken 2 uses a compact hash table. This hash table is a probabilistic data structure that allows for faster queries and lower memory requirements. However, this data structure does have a <1% chance of returning the incorrect LCA or returning an LCA for a non-inserted minimizer. Users can compensate for this possibility by using Kraken's confidence scoring thresholds. 4. Protein Databases: Kraken 2 allows for databases built from amino acid sequences. When queried, Kraken 2 performs a six-frame translated search of the query sequences against the database. 5. 16S Databases: Kraken 2 also provides support for databases not based on NCBI's taxonomy. Currently, these include the 16S databases: Greengenes, SILVA, and RDP. drwxr-xr-x root/root 0 2021-08-15 13:21 ./ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/bin/ lrwxrwxrwx root/root 0 2021-08-15 13:21 ./usr/bin/kraken2 -> ../lib/kraken2/kraken2 lrwxrwxrwx root/root 0 2021-08-15 13:21 ./usr/bin/kraken2-build -> ../lib/kraken2/kraken2-build lrwxrwxrwx root/root 0 2021-08-15 13:21 ./usr/bin/kraken2-inspect -> ../lib/kraken2/kraken2-inspect drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/lib/kraken2/ -rwxr-xr-x root/root 959 2021-08-15 13:21 ./usr/lib/kraken2/16S_gg_installation.sh -rwxr-xr-x root/root 956 2021-08-15 13:21 ./usr/lib/kraken2/16S_rdp_installation.sh -rwxr-xr-x root/root 1193 2021-08-15 13:21 ./usr/lib/kraken2/16S_silva_installation.sh -rwxr-xr-x root/root 947 2021-08-15 13:21 ./usr/lib/kraken2/add_to_library.sh -rwxr-xr-x root/root 67220 2021-08-15 13:21 ./usr/lib/kraken2/build_db -rwxr-xr-x root/root 2434 2021-08-15 13:21 ./usr/lib/kraken2/build_gg_taxonomy.pl -rwxr-xr-x root/root 4654 2021-08-15 13:21 ./usr/lib/kraken2/build_kraken2_db.sh -rwxr-xr-x root/root 2187 2021-08-15 13:21 ./usr/lib/kraken2/build_rdp_taxonomy.pl -rwxr-xr-x root/root 1265 2021-08-15 13:21 ./usr/lib/kraken2/build_silva_taxonomy.pl -rwxr-xr-x root/root 153236 2021-08-15 13:21 ./usr/lib/kraken2/classify -rwxr-xr-x root/root 583 2021-08-15 13:21 ./usr/lib/kraken2/clean_db.sh -rwxr-xr-x root/root 1273 2021-08-15 13:21 ./usr/lib/kraken2/cp_into_tempfile.pl -rwxr-xr-x root/root 4497 2021-08-15 13:21 ./usr/lib/kraken2/download_genomic_library.sh -rwxr-xr-x root/root 1760 2021-08-15 13:21 ./usr/lib/kraken2/download_taxonomy.sh -rwxr-xr-x root/root 116372 2021-08-15 13:21 ./usr/lib/kraken2/dump_table -rwxr-xr-x root/root 22108 2021-08-15 13:21 ./usr/lib/kraken2/estimate_capacity -rwxr-xr-x root/root 8136 2021-08-15 13:21 ./usr/lib/kraken2/kraken2 -rwxr-xr-x root/root 10930 2021-08-15 13:21 ./usr/lib/kraken2/kraken2-build -rwxr-xr-x root/root 2698 2021-08-15 13:21 ./usr/lib/kraken2/kraken2-inspect -rw-r--r-- root/root 2803 2021-08-15 13:21 ./usr/lib/kraken2/kraken2lib.pm -rwxr-xr-x root/root 18012 2021-08-15 13:21 ./usr/lib/kraken2/lookup_accession_numbers -rwxr-xr-x root/root 1776 2021-08-15 13:21 ./usr/lib/kraken2/lookup_accession_numbers.pl -rwxr-xr-x root/root 3879 2021-08-15 13:21 ./usr/lib/kraken2/make_seqid2taxid_map.pl -rwxr-xr-x root/root 1213 2021-08-15 13:21 ./usr/lib/kraken2/mask_low_complexity.sh -rwxr-xr-x root/root 6391 2021-08-15 13:21 ./usr/lib/kraken2/rsync_from_ncbi.pl -rwxr-xr-x root/root 1655 2021-08-15 13:21 ./usr/lib/kraken2/scan_fasta_file.pl -rwxr-xr-x root/root 1596 2021-08-15 13:21 ./usr/lib/kraken2/standard_installation.sh drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/doc-base/ -rw-r--r-- root/root 2282 2020-11-12 17:53 ./usr/share/doc-base/kraken2.kraken2 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./usr/share/doc/kraken2/html/top.html -rw-r--r-- root/root 710 2020-11-12 17:53 ./usr/share/doc/kraken2/run-unit-test drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/doc/kraken2/test_data/ -rw-r--r-- root/root 1776 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/Acartia_tonsa.fasta -rw-r--r-- root/root 1578 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/Acinetobacter_phage.fasta.gz -rw-r--r-- root/root 237 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test.fa drwxr-xr-x root/root 0 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/ -rw-r--r-- root/root 1834 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/citation.dmp -rw-r--r-- root/root 807186 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/delnodes.dmp.gz -rw-r--r-- root/root 442 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/division.dmp -rw-r--r-- root/root 2335 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gc.prt.gz -rw-r--r-- root/root 779 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gencode.dmp.gz -rw-r--r-- root/root 34 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/gi_taxid_nucl.dmp -rw-r--r-- root/root 261119 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/merged.dmp.gz -rw-r--r-- root/root 870 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/names.dmp -rw-r--r-- root/root 834 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/nodes.dmp -rw-r--r-- root/root 2652 2020-11-12 17:53 ./usr/share/doc/kraken2/test_data/test_db/taxonomy/readme.txt drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-15 13:21 ./usr/share/man/man1/ -rw-r--r-- root/root 1131 2021-08-15 13:21 ./usr/share/man/man1/kraken2-build.1.gz -rw-r--r-- root/root 535 2021-08-15 13:21 ./usr/share/man/man1/kraken2-inspect.1.gz -rw-r--r-- root/root 945 2021-08-15 13:21 ./usr/share/man/man1/kraken2.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [534 B] Get:5 copy:/<>/apt_archive ./ Packages [619 B] Fetched 2116 B in 0s (102 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 7402 kB of archives. After this operation, 21.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.5-1 [51.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.36.0-2 [815 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] 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amd64 0.26-1+b1 [13.8 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.611-1 [45.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012004-1 [351 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7402 kB in 0s (26.9 MB/s) Selecting previously unselected package diffstat. (Reading database ... 20915 files and directories currently installed.) Preparing to unpack .../00-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../01-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../02-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../03-libsqlite3-0_3.36.0-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.36.0-2) ... Selecting previously unselected package gpg. Preparing to unpack .../04-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../05-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.01-2) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.26-1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:amd64 (3.36.0-2) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.26-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.22-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.611-1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012004-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.005004-2) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-17) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 27928 Build-Time: 40 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 35 Job: kraken2_2.1.2-1 Lintian: pass Machine Architecture: amd64 Package: kraken2 Package-Time: 89 Source-Version: 2.1.2-1 Space: 27928 Status: successful Version: 2.1.2-1 -------------------------------------------------------------------------------- Finished at 2021-09-02T17:50:31Z Build needed 00:01:29, 27928k disk space