sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | lagan 2.0-4 (arm64) Thu, 18 Jul 2019 04:42:34 +0000 | +==============================================================================+ Package: lagan Version: 2.0-4 Source Version: 2.0-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-607b54fc-002a-4073-b234-f6eb31bc0ddb' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-17-0817.03.pdiff [25.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-17-1416.21.pdiff [25.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-17-2020.08.pdiff [22.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-18-0221.54.pdiff [31.6 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-17-0817.03.pdiff [13.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-17-1416.21.pdiff [20.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-17-2020.08.pdiff [53.6 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-18-0221.54.pdiff [31.6 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-18-0221.54.pdiff [42.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-18-0221.54.pdiff [42.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8188 kB] Fetched 8628 kB in 2s (4425 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debianutils gpgv libseccomp2 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 741 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 debianutils amd64 4.8.6.3 [100 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 gpgv amd64 2.2.17-3 [599 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libseccomp2 amd64 2.4.1-1 [42.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 741 kB in 0s (32.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11958 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.3_amd64.deb ... Unpacking debianutils (4.8.6.3) over (4.8.6.2) ... Setting up debianutils (4.8.6.3) ... (Reading database ... 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Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lagan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lagan.git Please use: git clone https://salsa.debian.org/med-team/lagan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 202 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-4 (dsc) [1949 B] Get:2 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-4 (tar) [193 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-4 (diff) [7196 B] Fetched 202 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lagan-ePTnEd/lagan-2.0' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-ePTnEd' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-wP7akl/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-wP7akl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wP7akl/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-wP7akl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wP7akl/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-wP7akl/apt_archive ./ Packages [451 B] Fetched 1770 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libmpx2-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-8-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-8-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-8-aarch64-linux-gnu gcc-8-aarch64-linux-gnu-base gcc-8-cross-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-8-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wP7akl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190707-1 [2960 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6244 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross3 [1312 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.1.0-8cross1 [34.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.1.0-8cross1 [76.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.1.0-8cross1 [24.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.1.0-8cross1 [8644 B] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.1.0-8cross1 [347 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.1.0-8cross1 [121 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.1.0-8cross1 [267 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.1.0-8cross1 [416 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.1.0-8cross1 [117 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-arm64-cross all 8.3.0-19cross1 [828 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6687 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 4.19.37-5cross3 [1252 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross3 [2322 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-arm64-cross all 8.3.0-19cross1 [1490 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-aarch64-linux-gnu amd64 8.3.0-19cross1 [6819 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (61.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11958 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Preparing to unpack .../26-linux-libc-dev-arm64-cross_4.19.37-5cross3_all.deb ... Unpacking linux-libc-dev-arm64-cross (4.19.37-5cross3) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../27-libc6-dev-arm64-cross_2.28-10cross3_all.deb ... Unpacking libc6-dev-arm64-cross (2.28-10cross3) ... Selecting previously unselected package libstdc++-8-dev-arm64-cross. Preparing to unpack .../28-libstdc++-8-dev-arm64-cross_8.3.0-19cross1_all.deb ... Unpacking libstdc++-8-dev-arm64-cross (8.3.0-19cross1) ... Selecting previously unselected package g++-8-aarch64-linux-gnu. Preparing to unpack .../29-g++-8-aarch64-linux-gnu_8.3.0-19cross1_amd64.deb ... Unpacking g++-8-aarch64-linux-gnu (8.3.0-19cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../30-g++-aarch64-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. 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Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../37-libxml-sax-perl_1.00+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../38-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../39-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../40-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../41-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../42-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../43-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../44-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../45-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../46-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../47-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190707-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up gcc-8-aarch64-linux-gnu-base:amd64 (8.3.0-19cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross3) ... Setting up cpp-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up linux-libc-dev-arm64-cross (4.19.37-5cross3) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (9.1.0-8cross1) ... Setting up libgcc1-arm64-cross (1:9.1.0-8cross1) ... Setting up liblsan0-arm64-cross (9.1.0-8cross1) ... Setting up libgomp1-arm64-cross (9.1.0-8cross1) ... Setting up libtsan0-arm64-cross (9.1.0-8cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross3) ... Setting up libasan5-arm64-cross (9.1.0-8cross1) ... Setting up libstdc++6-arm64-cross (9.1.0-8cross1) ... Setting up cpp-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libitm1-arm64-cross (9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-arm64-cross (9.1.0-8cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-arm64-cross (8.3.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up libstdc++-8-dev-arm64-cross (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up gcc-aarch64-linux-gnu (4:8.3.0-1) ... Setting up g++-8-aarch64-linux-gnu (8.3.0-19cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-aarch64-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-wP7akl/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-wP7akl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wP7akl/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-wP7akl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wP7akl/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-wP7akl/apt_archive ./ Packages [569 B] Fetched 2016 B in 0s (105 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-wP7akl/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 15244 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), libboost-dev dpkg-deb: building package 'sbuild-build-depends-lagan-dummy' in '/<>/resolver-wP7akl/apt_archive/sbuild-build-depends-lagan-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lagan-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-wP7akl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wP7akl/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-wP7akl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wP7akl/apt_archive ./ Sources [639 B] Get:5 copy:/<>/resolver-wP7akl/apt_archive ./ Packages [719 B] Fetched 2321 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install lagan build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libboost-dev:arm64 libboost1.67-dev:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:arm64 libboost1.67-doc:arm64 libboost-atomic1.67-dev:arm64 libboost-chrono1.67-dev:arm64 libboost-container1.67-dev:arm64 libboost-context1.67-dev:arm64 libboost-coroutine1.67-dev:arm64 libboost-date-time1.67-dev:arm64 libboost-exception1.67-dev:arm64 libboost-fiber1.67-dev:arm64 libboost-filesystem1.67-dev:arm64 libboost-graph1.67-dev:arm64 libboost-graph-parallel1.67-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-locale1.67-dev:arm64 libboost-log1.67-dev:arm64 libboost-math1.67-dev:arm64 libboost-mpi1.67-dev:arm64 libboost-mpi-python1.67-dev:arm64 libboost-numpy1.67-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-python1.67-dev:arm64 libboost-random1.67-dev:arm64 libboost-regex1.67-dev:arm64 libboost-serialization1.67-dev:arm64 libboost-signals1.67-dev:arm64 libboost-stacktrace1.67-dev:arm64 libboost-system1.67-dev:arm64 libboost-test1.67-dev:arm64 libboost-thread1.67-dev:arm64 libboost-timer1.67-dev:arm64 libboost-type-erasure1.67-dev:arm64 libboost-wave1.67-dev:arm64 libboost1.67-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-8-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:arm64 gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libboost-dev:arm64 libboost1.67-dev:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf sbuild-build-depends-lagan-dummy:arm64 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After this operation, 224 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wP7akl/apt_archive ./ sbuild-build-depends-lagan-dummy 0.invalid.0 [880 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.1.0-8 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.2.2-1 [20.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.2.2-1 [13.7 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190716-1 [80.7 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.5-1 [1293 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.2 [1024 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-8-base arm64 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.1.0-8 [34.1 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.1.0-8 [354 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.1.0-8 [8832 B] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.1.0-8 [78.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.1.0-8 [24.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.1.0-8 [122 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.1.0-8 [274 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.1.0-8 [454 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.1.0-8 [118 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-8-dev arm64 8.3.0-19 [835 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 4.19.37-5 [1165 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-8-dev arm64 8.3.0-19 [1491 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.67-dev arm64 1.67.0-13 [8386 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.67.0.1 [3864 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.2 MB in 1s (55.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15244 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../06-gcc-9-base_9.1.0-8_arm64.deb ... Unpacking gcc-9-base:arm64 (9.1.0-8) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.2.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.2.2-1) ... 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Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:arm64 (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:arm64 (9.1.0-8) ... Setting up libfile-stripnondeterminism-perl (1.2.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190716-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:arm64 (2.28-10) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libitm1:arm64 (9.1.0-8) ... Setting up libgcc1:arm64 (1:9.1.0-8) ... Setting up libgomp1:arm64 (9.1.0-8) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.1.0-8) ... Setting up libatomic1:arm64 (9.1.0-8) ... Setting up dh-strip-nondeterminism (1.2.2-1) ... Setting up libstdc++6:arm64 (9.1.0-8) ... Setting up liblsan0:arm64 (9.1.0-8) ... Setting up libtsan0:arm64 (9.1.0-8) ... Setting up debhelper (12.2.2) ... Setting up libubsan1:arm64 (9.1.0-8) ... Setting up libgcc-8-dev:arm64 (8.3.0-19) ... Setting up libstdc++-8-dev:arm64 (8.3.0-19) ... Setting up libboost1.67-dev:arm64 (1.67.0-13) ... Setting up libboost-dev:arm64 (1.67.0.1) ... Setting up sbuild-build-depends-lagan-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190707-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-arm64-cross_8.3.0-19cross1 libstdc++6_9.1.0-8 libstdc++6-arm64-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-5 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190707-1 binutils-aarch64-linux-gnu_2.32.51.20190707-1 binutils-common_2.32.51.20190707-1 binutils-x86-64-linux-gnu_2.32.51.20190707-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-aarch64-linux-gnu_8.3.0-19cross1 cpp-aarch64-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.2.2 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.2.2-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190716-1 e2fsprogs_1.45.2-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-aarch64-linux-gnu_8.3.0-19cross1 g++-aarch64-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-aarch64-linux-gnu_8.3.0-19cross1 gcc-8-aarch64-linux-gnu-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-8 gcc-9-cross-base_9.1.0-8cross1 gcc-aarch64-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-8 libasan5-arm64-cross_9.1.0-8cross1 libatomic1_9.1.0-8 libatomic1-arm64-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-1 libaudit1_1:2.8.5-1 libbinutils_2.32.51.20190707-1 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.1 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-arm64-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-arm64-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-8 libcom-err2_1.45.2-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.2-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.2.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-arm64-cross_8.3.0-19cross1 libgcc1_1:9.1.0-8 libgcc1-arm64-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.5-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-8 libgomp1-arm64-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-8 libitm1-arm64-cross_9.1.0-8cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-8 liblsan0-arm64-cross_9.1.0-8cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-8 libseccomp2_2.4.1-1 libselinux1_2.9-2 libsemanage-common_2.9-2 libsemanage1_2.9-2 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.2-1 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-arm64-cross_8.3.0-19cross1 libstdc++6_9.1.0-8 libstdc++6-arm64-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-6+b1 libtasn1-6_4.13-4 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_9.1.0-8 libtsan0-arm64-cross_9.1.0-8cross1 libubsan1_9.1.0-8 libubsan1-arm64-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-6+b1 libunistring2_0.9.10-2 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-5 linux-libc-dev-arm64-cross_4.19.37-5cross3 login_1:4.7-2 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.7-2 patch_2.7.6-4 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-lagan-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-1 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jul 11 12:19:06 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lagan_2.0-4.dsc dpkg-source: info: extracting lagan in /<> dpkg-source: info: unpacking lagan_2.0.orig.tar.gz dpkg-source: info: unpacking lagan_2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_define_conflicting_getline.patch dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying ambiuousEnd.patch dpkg-source: info: applying addTest.patch dpkg-source: info: applying adjustPerlPaths.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-607b54fc-002a-4073-b234-f6eb31bc0ddb SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package lagan dpkg-buildpackage: info: source version 2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f chaos anchors order glocal utils/bin2bl mlagan utils/cstat utils/bin2mf utils/rc *~ utils/contigorder utils/getbounds utils/cextract utils/seqmerge utils/getlength utils/getoverlap utils/*~ utils/scorealign utils/scorecontigs mlagan.purify utils/getcontigpos utils/fa2xfa utils/Glue utils/dotplot utils/overlay make -C src clean make[3]: Entering directory '/<>/src' rm -f *.o *~ utils/*~ mlagan.purify core (cd glocal; make clean) make[4]: Entering directory '/<>/src/glocal' rm -f *.o ./*~ *~ core make[4]: Leaving directory '/<>/src/glocal' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' rm -f prolagan make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[2]: Entering directory '/<>/src' aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../anchors anchors.c skiplist.c -Wl,-z,relro skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG -Wl,-z,relro fchaos.c: In function 'readfile': fchaos.c:357:18: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../order order.c diagmatrix.c filebuffer.c -Wl,-z,relro order.c: In function 'doAlign': order.c:409:5: warning: implicit declaration of function 'printMFAAlign'; did you mean 'printBinAlign'? [-Wimplicit-function-declaration] printMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); ^~~~~~~~~~~~~ printBinAlign order.c:411:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printTextAlign'? [-Wimplicit-function-declaration] printXMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); ^~~~~~~~~~~~~~ printTextAlign filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro mlagan.c: In function 'readfile': mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function 'main': mlagan.c:1071:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printFASTAAlign'? [-Wimplicit-function-declaration] printXMFAAlign(outfile, final); ^~~~~~~~~~~~~~ printFASTAAlign multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:586:10: warning: 'gapcache' is static but used in inline function 'contGap' which is not static return gapcache[(v(other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:581:10: warning: 'gapcache' is static but used in inline function 'endGap2' which is not static return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:576:10: warning: 'gapcache' is static but used in inline function 'endGap1' which is not static return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | ^~~~~~~~ multial.c:570:10: warning: 'gapcache' is static but used in inline function 'endGap0' which is not static return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:563:10: warning: 'matchcache' is static but used in inline function 'scoreOpp' which is not static return matchcache[v(other->cnts[0][ow]) | ^~~~~~~~~~ multial.c:556:5: warning: 'gapcache' is static but used in inline function 'matchscore' which is not static gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | ^~~~~~~~ multial.c:552:5: warning: 'matchcache' is static but used in inline function 'matchscore' which is not static matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | ^~~~~~~~~~ skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro prolagan.c: In function 'readfile': prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function 'main': prolagan.c:1091:5: warning: implicit declaration of function 'printXMFAAlign'; did you mean 'printFASTAAlign'? [-Wimplicit-function-declaration] printXMFAAlign(outfile, final); ^~~~~~~~~~~~~~ printFASTAAlign multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:586:10: warning: 'gapcache' is static but used in inline function 'contGap' which is not static return gapcache[(v(other->cnts[CNTS_GS][ow])) | ^~~~~~~~ multial.c:581:10: warning: 'gapcache' is static but used in inline function 'endGap2' which is not static return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:576:10: warning: 'gapcache' is static but used in inline function 'endGap1' which is not static return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | ^~~~~~~~ multial.c:570:10: warning: 'gapcache' is static but used in inline function 'endGap0' which is not static return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | ^~~~~~~~ multial.c:563:10: warning: 'matchcache' is static but used in inline function 'scoreOpp' which is not static return matchcache[v(other->cnts[0][ow]) | ^~~~~~~~~~ multial.c:556:5: warning: 'gapcache' is static but used in inline function 'matchscore' which is not static gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | ^~~~~~~~ multial.c:552:5: warning: 'matchcache' is static but used in inline function 'matchscore' which is not static matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | ^~~~~~~~~~ skiplist.c: In function 'printSLE': skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] printf(" %d %x\n", tbp->index, tbp->myelem); ~^ ~~~~~~~~~~~ %p filebuffer.c: In function 'FileRead': filebuffer.c:123:34: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] temp[i] = (strchr (alphabet, toupper ((char) i)) != 0) ? ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/bin2mf utils/bin2mf.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/bin2bl utils/bin2bl.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/cextract utils/cextract.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/cstat utils/cstat.c -Wl,-z,relro utils/cstat.c: In function 'cntlets': utils/cstat.c:51:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/cstat.c:52:18: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] currchar = toupper(currchar); ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/contigorder utils/contigorder.c -Wl,-z,relro utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:15:57: warning: format '%s' expects a matching 'char *' argument [-Wformat=] fprintf (stderr, "contigorder: Error opening file: %s\n"); ~^ utils/contigorder.c:26:18: warning: unknown conversion type character '&' in format [-Wformat=] fscanf (file, "%&d", &dummy); ^ utils/contigorder.c:26:16: warning: too many arguments for format [-Wformat-extra-args] fscanf (file, "%&d", &dummy); ^~~~~ utils/contigorder.c: In function 'getScores': utils/contigorder.c:52:57: warning: format '%s' expects a matching 'char *' argument [-Wformat=] fprintf (stderr, "contigorder: Error opening file: %s\n"); ~^ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getlength utils/getlength.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/rc utils/rc.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro utils/scorecontigs.c: In function 'cntlets': utils/scorecontigs.c:63:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/scorecontigs.c:64:18: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] currchar = toupper(currchar); ^~~~~~~ utils/scorecontigs.c:65:27: warning: implicit declaration of function 'isalpha' [-Wimplicit-function-declaration] if (!lettersonly || isalpha (currchar)){ ^~~~~~~ utils/scorecontigs.c: In function 'main': utils/scorecontigs.c:384:38: warning: format '%s' expects argument of type 'char *', but argument 6 has type 'char (*)[1024]' [-Wformat=] if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ ~^ ~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro utils/Glue.cpp: In function 'void calculateScoreMatrix(int)': utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] char *alpha = "ATCG"; ^~~~~~ utils/Glue.cpp:72:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); ^ aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/overlay utils/overlay.c -Wl,-z,relro utils/overlay.c: In function 'read_align': utils/overlay.c:119:10: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] if (!isspace(currchar)) { ^~~~~~~ utils/overlay.c:120:19: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] checkchar = toupper(currchar); ^~~~~~~ utils/overlay.c:134:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/overlay.c:134:45: note: length computed here strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); ^~~~~~~~~~~~ (cd glocal; make LDFLAGS=-Wl,-z,relro) make[3]: Entering directory '/<>/src/glocal' aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c glocal.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c io.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c rightinfluence.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c leftinfluence.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c score.cpp -Wl,-z,relro aarch64-linux-gnu-g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm make[3]: Leaving directory '/<>/src/glocal' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name flipchaos.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'lagan' in '../lagan_2.0-4_arm64.deb'. dpkg-deb: building package 'lagan-dbgsym' in '../lagan-dbgsym_2.0-4_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../lagan_2.0-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-07-18T04:43:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-wP7akl/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lagan-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-wP7akl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wP7akl/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-wP7akl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wP7akl/apt_archive ./ Sources [759 B] Get:5 copy:/<>/resolver-wP7akl/apt_archive ./ Packages [833 B] Fetched 2555 B in 0s (151 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 8413 kB of archives. After this operation, 22.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wP7akl/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-3 [306 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.20-1 [94.2 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8413 kB in 0s (29.8 MB/s) Selecting previously unselected package readline-common. (Reading database ... 32460 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lagan_2.0-4_arm64.changes: -------------------------- Format: 1.8 Date: Tue, 11 Jun 2019 13:40:14 +0200 Source: lagan Binary: lagan lagan-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: lagan - highly parametrizable pairwise global genome sequence aligner Closes: 929590 Changes: lagan (2.0-4) unstable; urgency=medium . [ Helmut Grohne ] * fix insane upstream build system Closes: #929590 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: a7865121bbbce484202677196f5401d4f946cc5f 900612 lagan-dbgsym_2.0-4_arm64.deb c5a8d9cb7d59ac5805352ace29f8caf14ec1f451 4583 lagan_2.0-4_arm64.buildinfo 6bcdf8d7aee1dc54dcb4874c3b720ee073700915 178396 lagan_2.0-4_arm64.deb Checksums-Sha256: 81e13b1179e94edc15717e32ae5c3d3881ae710f6291d56df5a190032dca54ca 900612 lagan-dbgsym_2.0-4_arm64.deb 11f6dffdae7d1dd250afa6d0b2604097f7f8f10206c1bbb9c18f347b49a99d9a 4583 lagan_2.0-4_arm64.buildinfo 6b8a83e880cee7806da82477926b289caa64640581a9bc4be4860a34df008b99 178396 lagan_2.0-4_arm64.deb Files: 4c0b7c052a4ddf8a3d6c5e6f96f19e31 900612 debug optional lagan-dbgsym_2.0-4_arm64.deb e33fbd2bba5167210b86403312d1c750 4583 science optional lagan_2.0-4_arm64.buildinfo bc5d4cef4d327b1933108ff96cd26921 178396 science optional lagan_2.0-4_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: lagan Binary: lagan Architecture: arm64 Version: 2.0-4 Checksums-Md5: 4c0b7c052a4ddf8a3d6c5e6f96f19e31 900612 lagan-dbgsym_2.0-4_arm64.deb bc5d4cef4d327b1933108ff96cd26921 178396 lagan_2.0-4_arm64.deb Checksums-Sha1: a7865121bbbce484202677196f5401d4f946cc5f 900612 lagan-dbgsym_2.0-4_arm64.deb 6bcdf8d7aee1dc54dcb4874c3b720ee073700915 178396 lagan_2.0-4_arm64.deb Checksums-Sha256: 81e13b1179e94edc15717e32ae5c3d3881ae710f6291d56df5a190032dca54ca 900612 lagan-dbgsym_2.0-4_arm64.deb 6b8a83e880cee7806da82477926b289caa64640581a9bc4be4860a34df008b99 178396 lagan_2.0-4_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 18 Jul 2019 04:43:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190707-1), binutils-common (= 2.32.51.20190707-1), binutils-x86-64-linux-gnu (= 2.32.51.20190707-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-5), debconf (= 1.5.72), debhelper (= 12.2.2), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.2.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12.20190716-1), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-8), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.1.0-8), libatomic1 (= 9.1.0-8), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-1), libaudit1 (= 1:2.8.5-1), libbinutils (= 2.32.51.20190707-1), libblkid1 (= 2.33.1-0.1), libboost-dev (= 1.67.0.1), libboost1.67-dev (= 1.67.0-13), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-8), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.2.2-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-8), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libglib2.0-0 (= 2.60.5-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.1.0-8), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.1.0-8), liblsan0 (= 9.1.0-8), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.1.0-8), libseccomp2 (= 2.4.1-1), libselinux1 (= 2.9-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-8), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-6+b1), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-8), libubsan1 (= 9.1.0-8), libuchardet0 (= 0.0.6-3), libudev1 (= 241-6+b1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-5), login (= 1:4.7-2), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-4), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-1), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1560253214" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lagan-dbgsym_2.0-4_arm64.deb ---------------------------- new Debian package, version 2.0. size 900612 bytes: control archive=1596 bytes. 1261 bytes, 12 lines control 2438 bytes, 23 lines md5sums Package: lagan-dbgsym Source: lagan Version: 2.0-4 Auto-Built-Package: debug-symbols Architecture: arm64 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bytes, 60 lines md5sums Package: lagan Version: 2.0-4 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 747 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Description: highly parametrizable pairwise global genome sequence aligner Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. . Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric. drwxr-xr-x root/root 0 2019-06-11 11:40 ./ drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/ drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/bin/ -rwxr-xr-x root/root 3110 2019-06-11 11:40 ./usr/bin/anal_gloc.pl -rwxr-xr-x root/root 14544 2019-06-11 11:40 ./usr/bin/anchors -rwxr-xr-x root/root 51688 2019-06-11 11:40 ./usr/bin/glocal -rwxr-xr-x root/root 6255 2019-06-11 11:40 ./usr/bin/lagan.pl lrwxrwxrwx root/root 0 2019-06-11 11:40 ./usr/bin/lagan_chaos -> ../lib/lagan/bin/chaos -rwxr-xr-x root/root 63904 2019-06-11 11:40 ./usr/bin/mlagan -rwxr-xr-x root/root 35152 2019-06-11 11:40 ./usr/bin/order -rwxr-xr-x root/root 63896 2019-06-11 11:40 ./usr/bin/prolagan -rwxr-xr-x root/root 9417 2019-06-11 11:40 ./usr/bin/rechaos.pl -rwxr-xr-x root/root 1146 2006-09-14 20:40 ./usr/bin/slagan-mfa.pl -rwxr-xr-x root/root 5266 2006-09-14 20:40 ./usr/bin/slagan.pl -rwxr-xr-x root/root 72331 2006-09-14 20:40 ./usr/bin/supermap.pl 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2019-06-11 11:40 ./usr/share/doc/lagan/ -rw-r--r-- root/root 812 2019-06-11 11:40 ./usr/share/doc/lagan/README.Debian -rw-r--r-- root/root 3832 2006-09-14 21:23 ./usr/share/doc/lagan/README.FIRST -rw-r--r-- root/root 3569 2006-09-14 20:40 ./usr/share/doc/lagan/README.chaos.gz -rw-r--r-- root/root 2929 2006-09-14 23:12 ./usr/share/doc/lagan/README.lagan -rw-r--r-- root/root 2982 2006-09-14 21:29 ./usr/share/doc/lagan/README.mlagan -rw-r--r-- root/root 2681 2006-09-14 23:14 ./usr/share/doc/lagan/README.shuffle -rw-r--r-- root/root 2858 2006-09-14 20:40 ./usr/share/doc/lagan/README.tools.gz -rw-r--r-- root/root 816 2019-06-11 11:40 ./usr/share/doc/lagan/changelog.Debian.gz -rw-r--r-- root/root 1203 2019-06-11 11:40 ./usr/share/doc/lagan/copyright drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/share/doc/lagan/examples/ -rw-r--r-- root/root 1218 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.fasta -rw-r--r-- root/root 961 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.params -rw-r--r-- root/root 177 2006-09-14 20:40 ./usr/share/doc/lagan/examples/test.score drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/share/lintian/ drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1108 2019-06-11 11:40 ./usr/share/lintian/overrides/lagan drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/share/man/ drwxr-xr-x root/root 0 2019-06-11 11:40 ./usr/share/man/man1/ -rw-r--r-- root/root 752 2019-06-11 11:40 ./usr/share/man/man1/mlagan.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 11028 Build-Time: 34 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 28 Job: lagan_2.0-4 Lintian: pass Machine Architecture: amd64 Package: lagan Package-Time: 72 Source-Version: 2.0-4 Space: 11028 Status: successful Version: 2.0-4 -------------------------------------------------------------------------------- Finished at 2019-07-18T04:43:46Z Build needed 00:01:12, 11028k disk space