sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | lagan 2.0-6 (arm64) Sat, 18 Apr 2020 20:44:03 +0000 | +==============================================================================+ Package: lagan Version: 2.0-6 Source Version: 2.0-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-a98cfd80-b531-4a9f-81b9-692aadd95fdf' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-y6GSmh/resolver-n3Sj8U' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-18-0805.17.pdiff [10.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-18-1402.01.pdiff [23.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-18-2003.54.pdiff [39.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-18-0805.17.pdiff [12.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-18-2003.54.pdiff [39.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-18-1402.01.pdiff [21.5 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-18-2003.54.pdiff [29.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-18-2003.54.pdiff [29.0 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8070 kB] Fetched 8409 kB in 1s (5635 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debconf gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan0 libubsan1 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1823 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 debconf all 1.5.74 [145 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 10-20200418-1 [9036 B] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 10-20200418-1 [134 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 10-20200418-1 [313 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-base amd64 10-20200418-1 [196 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 10-20200418-1 [492 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 10-20200418-1 [145 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 10-20200418-1 [141 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 10-20200418-1 [25.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 10-20200418-1 [99.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1 amd64 1:10-20200418-1 [41.2 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 10-20200418-1 [39.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 10-20200418-1 [41.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1823 kB in 0s (62.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12628 files and directories currently installed.) Preparing to unpack .../debconf_1.5.74_all.deb ... Unpacking debconf (1.5.74) over (1.5.73) ... Setting up debconf (1.5.74) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12628 files and directories currently installed.) Preparing to unpack .../0-libquadmath0_10-20200418-1_amd64.deb ... Unpacking libquadmath0:amd64 (10-20200418-1) over (10-20200411-1) ... Preparing to unpack .../1-liblsan0_10-20200418-1_amd64.deb ... Unpacking liblsan0:amd64 (10-20200418-1) over (10-20200411-1) ... Preparing to unpack .../2-libitm1_10-20200418-1_amd64.deb ... Unpacking libitm1:amd64 (10-20200418-1) over (10-20200411-1) ... 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Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lagan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lagan.git Please use: git clone https://salsa.debian.org/med-team/lagan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 203 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-6 (dsc) [1954 B] Get:2 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-6 (tar) [193 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main lagan 2.0-6 (diff) [7908 B] Fetched 203 kB in 0s (13.4 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lagan-y6GSmh/lagan-2.0' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-y6GSmh' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libboost-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 12), libboost-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1863 B in 0s (73.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64 libboost1.67-dev:arm64 libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:arm64 libboost1.67-doc:arm64 libboost-atomic1.67-dev:arm64 libboost-chrono1.67-dev:arm64 libboost-container1.67-dev:arm64 libboost-context1.67-dev:arm64 libboost-contract1.67-dev:arm64 libboost-coroutine1.67-dev:arm64 libboost-date-time1.67-dev:arm64 libboost-exception1.67-dev:arm64 libboost-fiber1.67-dev:arm64 libboost-filesystem1.67-dev:arm64 libboost-graph1.67-dev:arm64 libboost-graph-parallel1.67-dev:arm64 libboost-iostreams1.67-dev:arm64 libboost-locale1.67-dev:arm64 libboost-log1.67-dev:arm64 libboost-math1.67-dev:arm64 libboost-mpi1.67-dev:arm64 libboost-mpi-python1.67-dev:arm64 libboost-numpy1.67-dev:arm64 libboost-program-options1.67-dev:arm64 libboost-python1.67-dev:arm64 libboost-random1.67-dev:arm64 libboost-regex1.67-dev:arm64 libboost-serialization1.67-dev:arm64 libboost-signals1.67-dev:arm64 libboost-stacktrace1.67-dev:arm64 libboost-system1.67-dev:arm64 libboost-test1.67-dev:arm64 libboost-thread1.67-dev:arm64 libboost-timer1.67-dev:arm64 libboost-type-erasure1.67-dev:arm64 libboost-wave1.67-dev:arm64 libboost1.67-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 libstdc++-9-doc libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils build-essential cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-base:arm64 gcc-10-cross-base gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-dev:arm64 libboost1.67-dev:arm64 libbsd0 libc6:arm64 libc6-arm64-cross libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 86.8 MB of archives. After this operation, 463 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10-20200418-1 [196 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.3.0-10 [196 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.34-6 [2791 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-10 [1699 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-10 [10.7 MB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.3.0-8cross1 [197 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [6544 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.3.0-8cross1 [192 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10-20200411-1cross1 [192 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.30-2cross1 [1246 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10-20200411-1cross1 [34.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10-20200411-1cross1 [88.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10-20200411-1cross1 [22.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10-20200411-1cross1 [8596 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.3.0-8cross1 [347 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10-20200411-1cross1 [125 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10-20200411-1cross1 [285 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10-20200411-1cross1 [408 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10-20200411-1cross1 [122 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.3.0-8cross1 [887 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [6922 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.4.19-1cross1 [1153 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.30-2cross1 [2265 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.3.0-8cross1 [1637 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.3.0-8cross1 [7127 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13 [184 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13 [1002 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10-20200418-1 [34.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.16-1 [90.4 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.30-4 [2469 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.3.0-10 [354 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10-20200418-1 [8844 B] Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10-20200418-1 [90.0 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10-20200418-1 [23.4 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10-20200418-1 [126 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10-20200418-1 [292 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10-20200418-1 [448 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10-20200418-1 [123 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.3.0-10 [877 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.5.17-1 [1072 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.16-1 [111 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.30-4 [2280 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.3.0-10 [1658 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libboost1.67-dev arm64 1.67.0-17+b1 [8388 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 libboost-dev arm64 1.67.0.2+b1 [4484 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.8 MB in 1s (114 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12628 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../006-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package gcc-10-base:arm64. Preparing to unpack .../007-gcc-10-base_10-20200418-1_arm64.deb ... Unpacking gcc-10-base:arm64 (10-20200418-1) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../008-gcc-9-base_9.3.0-10_arm64.deb ... Unpacking gcc-9-base:arm64 (9.3.0-10) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../011-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../024-libstdc++-9-dev_9.3.0-10_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-10) ... Selecting previously unselected package g++-9. Preparing to unpack .../025-g++-9_9.3.0-10_amd64.deb ... Unpacking g++-9 (9.3.0-10) ... Selecting previously unselected package g++. Preparing to unpack .../026-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../027-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu-base:amd64. Preparing to unpack .../028-gcc-9-aarch64-linux-gnu-base_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu-base:amd64 (9.3.0-8cross1) ... Selecting previously unselected package cpp-9-aarch64-linux-gnu. Preparing to unpack .../029-cpp-9-aarch64-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking cpp-9-aarch64-linux-gnu (9.3.0-8cross1) ... 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Selecting previously unselected package gcc-9-aarch64-linux-gnu. Preparing to unpack .../045-gcc-9-aarch64-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../046-gcc-aarch64-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../047-linux-libc-dev-arm64-cross_5.4.19-1cross1_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.4.19-1cross1) ... Selecting previously unselected package libc6-dev-arm64-cross. Preparing to unpack .../048-libc6-dev-arm64-cross_2.30-2cross1_all.deb ... Unpacking libc6-dev-arm64-cross (2.30-2cross1) ... Selecting previously unselected package libstdc++-9-dev-arm64-cross. Preparing to unpack .../049-libstdc++-9-dev-arm64-cross_9.3.0-8cross1_all.deb ... Unpacking libstdc++-9-dev-arm64-cross (9.3.0-8cross1) ... Selecting previously unselected package g++-9-aarch64-linux-gnu. Preparing to unpack .../050-g++-9-aarch64-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking g++-9-aarch64-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package g++-aarch64-linux-gnu. Preparing to unpack .../051-g++-aarch64-linux-gnu_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../052-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../053-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../054-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../055-libxml2_2.9.10+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-5) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../056-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../057-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../058-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../059-libxml-libxml-perl_2.0134+dfsg-2_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../060-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../061-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../062-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../063-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../064-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../065-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../066-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../067-crossbuild-essential-arm64_12.8_all.deb ... Unpacking crossbuild-essential-arm64 (12.8) ... Selecting previously unselected package libtool. Preparing to unpack .../068-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../069-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../070-libdebhelper-perl_13_all.deb ... Unpacking libdebhelper-perl (13) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../071-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. 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Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:arm64 (10-20200418-1) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.30-2cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-9-cross-base (9.3.0-8cross1) ... Setting up gcc-10-cross-base (10-20200411-1cross1) ... Setting up linux-libc-dev-arm64-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:arm64 (9.3.0-10) ... Setting up libgcc-s1-arm64-cross (10-20200411-1cross1) ... Setting up libatomic1-arm64-cross (10-20200411-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up liblsan0-arm64-cross (10-20200411-1cross1) ... Setting up libgomp1-arm64-cross (10-20200411-1cross1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-10) ... Setting up libtool (2.4.6-14) ... Setting up libtsan0-arm64-cross (10-20200411-1cross1) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-arm64-cross (2.30-2cross1) ... Setting up libasan5-arm64-cross (9.3.0-8cross1) ... Setting up libstdc++6-arm64-cross (10-20200411-1cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (10-20200411-1cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-10) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up build-essential (12.8) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libubsan1-arm64-cross (10-20200411-1cross1) ... Setting up libgcc-9-dev-arm64-cross (9.3.0-8cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.3.0-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.3.0-8cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.3.0-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libcrypt1:arm64 (1:4.4.16-1) ... Setting up libgcc-s1:arm64 (10-20200418-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.30-4) ... Setting up libcrypt-dev:arm64 (1:4.4.16-1) ... Setting up libc6-dev:arm64 (2.30-4) ... Setting up libstdc++6:arm64 (10-20200418-1) ... Setting up liblsan0:arm64 (10-20200418-1) ... Setting up libitm1:arm64 (10-20200418-1) ... Setting up libtsan0:arm64 (10-20200418-1) ... Setting up debhelper (13) ... Setting up libgomp1:arm64 (10-20200418-1) ... Setting up libasan5:arm64 (9.3.0-10) ... Setting up libatomic1:arm64 (10-20200418-1) ... Setting up libubsan1:arm64 (10-20200418-1) ... Setting up libgcc-9-dev:arm64 (9.3.0-10) ... Setting up libstdc++-9-dev:arm64 (9.3.0-10) ... Setting up libboost1.67-dev:arm64 (1.67.0-17+b1) ... Setting up libboost-dev:arm64 (1.67.0.2+b1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-10 gcc-9_9.3.0-10 libc6-dev_2.30-4 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-arm64-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-arm64-cross_10-20200411-1cross1 linux-libc-dev_5.5.17-1 Package versions: adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-6 binutils-aarch64-linux-gnu_2.34-6 binutils-common_2.34-6 binutils-x86-64-linux-gnu_2.34-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-3 cpp-9_9.3.0-10 cpp-9-aarch64-linux-gnu_9.3.0-8cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.3.0-10 g++-9-aarch64-linux-gnu_9.3.0-8cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200418-1 gcc-10-cross-base_10-20200411-1cross1 gcc-8-base_8.4.0-3 gcc-9_9.3.0-10 gcc-9-aarch64-linux-gnu_9.3.0-8cross1 gcc-9-aarch64-linux-gnu-base_9.3.0-8cross1 gcc-9-base_9.3.0-10 gcc-9-cross-base_9.3.0-8cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libasan5_9.3.0-10 libasan5-arm64-cross_9.3.0-8cross1 libatomic1_10-20200418-1 libatomic1-arm64-cross_10-20200411-1cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.34-6 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b1 libboost1.67-dev_1.67.0-17+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-4 libc-dev-bin_2.30-4 libc6_2.30-4 libc6-arm64-cross_2.30-2cross1 libc6-dev_2.30-4 libc6-dev-arm64-cross_2.30-2cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200418-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-6 libctf0_2.34-6 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.8.0-1 libfile-which-perl_1.23-1 libgcc-9-dev_9.3.0-10 libgcc-9-dev-arm64-cross_9.3.0-8cross1 libgcc-s1_10-20200418-1 libgcc-s1-arm64-cross_10-20200411-1cross1 libgcc1_1:10-20200418-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1 libgomp1-arm64-cross_10-20200411-1cross1 libgpg-error0_1.37-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200418-1 libitm1-arm64-cross_10-20200411-1cross1 liblocale-gettext-perl_1.07-4 liblsan0_10-20200418-1 liblsan0-arm64-cross_10-20200411-1cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-3 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libquadmath0_10-20200418-1 libseccomp2_2.4.3-1+b1 libselinux1_3.0-1+b3 libsemanage-common_3.0-1 libsemanage1_3.0-1+b3 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-10 libstdc++-9-dev-arm64-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-arm64-cross_10-20200411-1cross1 libsub-override-perl_0.09-2 libsystemd0_245.4-4 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200418-1 libtsan0-arm64-cross_10-20200411-1cross1 libubsan1_10-20200418-1 libubsan1-arm64-cross_10-20200411-1cross1 libuchardet0_0.0.6-3 libudev1_245.4-4 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.5.17-1 linux-libc-dev-arm64-cross_5.4.19-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-10 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lagan Binary: lagan Architecture: any Version: 2.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/lagan Vcs-Git: https://salsa.debian.org/med-team/lagan.git Build-Depends: debhelper-compat (= 12), libboost-dev Package-List: lagan deb science optional arch=any Checksums-Sha1: 2417bec99ff59541287ad56fdfe3abb609323949 192945 lagan_2.0.orig.tar.gz 4cdf9e15a9f9e383eeccf284809490d10b8e7912 7908 lagan_2.0-6.debian.tar.xz Checksums-Sha256: 9e3c27d0fd7a3f3448035ea51996a50e314b139942d9313858c3e4678aae1281 192945 lagan_2.0.orig.tar.gz 391556279505692300c6a6eb7f5f867946ae58940ab51741b3dbfc966b946ff9 7908 lagan_2.0-6.debian.tar.xz Files: 7027ba63a2a5115871b85e205aa36bb7 192945 lagan_2.0.orig.tar.gz c5fb5ba888010a8ed47845a511e6774a 7908 lagan_2.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6aBhMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjPw/9E6R2aDooZDmLZBT+07llT7/z03K96nDo +fR+r6g8h2lo1Sa7mLa4kaob36/aNGBdTgDjXFhVGkHKyKFaFUML9iSOBLqtcI9R SwQW6FelnhZYJ3f6FI4N0xQ2kW0EKdOonT0gH8PbKQRMdp1LDk9pMz6XQPXeuV6Q XdpdMFKMNKEtP2y+ngv+vmr2vtkFD5J0KDv26qKxG53RNSbvmEwqw1igbuwYLkTM mS5yGWKDEOznFXBnu4YUwq1n1vBU6n9sRmbDk9Bjt7kWzsJ9aZAeIkx+Uqk5lGhN weOIbZuolJLy5wSGCKQ9z0tygn+Zvphs4MDlCmd0ShmNS1FH97bK6V1719dUJiMZ b+0mcVeIbAwRUlVXfrBIZIUTs/FejesqBcbsDq24gSyunxlQM4NS+JDBv4cZT2Qh ZCoNatBGRG0c6hBox4lP1EB8EewXTOAtODB2f7fzpoUJmosPGtB2ot4pgzBIkO6d Vug769iqs6xaAdxSAuTOz7L0cGpoTHzMroUJLJ7KePd7WqymLhMSNVG7HV7KIOX1 sEz3/anb8HjAl21sbyfRNHL+mc1JeeA8CjYFsMyUD0i5KGsjMT5OHUZFBNEoBdCN BvXatL3loF/NSoxPu/Wh+/hdriotkkCihXmbLIPM/9qCfCBx8vYatphm38EXUTZ9 WGWcQ9m5Gpk= =klWc -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Apr 17 19:40:03 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lagan_2.0-6.dsc dpkg-source: info: extracting lagan in /<> dpkg-source: info: unpacking lagan_2.0.orig.tar.gz dpkg-source: info: unpacking lagan_2.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_define_conflicting_getline.patch dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying ambiuousEnd.patch dpkg-source: info: applying addTest.patch dpkg-source: info: applying adjustPerlPaths.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc9.patch dpkg-source: info: applying gcc10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-a98cfd80-b531-4a9f-81b9-692aadd95fdf SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package lagan dpkg-buildpackage: info: source version 2.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f chaos anchors order glocal utils/bin2bl mlagan utils/cstat utils/bin2mf utils/rc *~ utils/contigorder utils/getbounds utils/cextract utils/seqmerge utils/getlength utils/getoverlap utils/*~ utils/scorealign utils/scorecontigs mlagan.purify utils/getcontigpos utils/fa2xfa utils/Glue utils/dotplot utils/overlay make -C src clean make[3]: Entering directory '/<>/src' rm -f *.o *~ utils/*~ mlagan.purify core (cd glocal; make clean) make[4]: Entering directory '/<>/src/glocal' rm -f *.o ./*~ *~ core make[4]: Leaving directory '/<>/src/glocal' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' rm -f prolagan make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[2]: Entering directory '/<>/src' aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../anchors anchors.c skiplist.c -Wl,-z,relro skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG -Wl,-z,relro fchaos.c: In function ‘readfile’: fchaos.c:357:18: warning: too many arguments for format [-Wformat-extra-args] 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../order order.c diagmatrix.c filebuffer.c -Wl,-z,relro order.c: In function ‘doAlign’: order.c:409:5: warning: implicit declaration of function ‘printMFAAlign’; did you mean ‘printBinAlign’? [-Wimplicit-function-declaration] 409 | printMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~ | printBinAlign order.c:411:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printTextAlign’? [-Wimplicit-function-declaration] 411 | printXMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~~ | printTextAlign aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro mlagan.c: In function ‘readfile’: mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function ‘main’: mlagan.c:1071:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1071 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro prolagan.c: In function ‘readfile’: prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function ‘main’: prolagan.c:1091:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1091 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/bin2mf utils/bin2mf.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/bin2bl utils/bin2bl.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/cextract utils/cextract.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/cstat utils/cstat.c -Wl,-z,relro utils/cstat.c: In function ‘cntlets’: utils/cstat.c:51:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 51 | if (!isspace(currchar)) { | ^~~~~~~ utils/cstat.c:52:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 52 | currchar = toupper(currchar); | ^~~~~~~ aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/contigorder utils/contigorder.c -Wl,-z,relro utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:15:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 15 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c:26:18: warning: unknown conversion type character ‘&’ in format [-Wformat=] 26 | fscanf (file, "%&d", &dummy); | ^ utils/contigorder.c:26:16: warning: too many arguments for format [-Wformat-extra-args] 26 | fscanf (file, "%&d", &dummy); | ^~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:52:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 52 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getlength utils/getlength.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/rc utils/rc.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:63:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 63 | if (!isspace(currchar)) { | ^~~~~~~ utils/scorecontigs.c:64:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 64 | currchar = toupper(currchar); | ^~~~~~~ utils/scorecontigs.c:65:27: warning: implicit declaration of function ‘isalpha’ [-Wimplicit-function-declaration] 65 | if (!lettersonly || isalpha (currchar)){ | ^~~~~~~ utils/scorecontigs.c: In function ‘main’: utils/scorecontigs.c:384:38: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[1024]’ [-Wformat=] 384 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | char * char (*)[1024] aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro utils/Glue.cpp: In function ‘void calculateScoreMatrix(int)’: utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 64 | char *alpha = "ATCG"; | ^~~~~~ utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" | ^~~~~~~~~~~~~~~ utils/Glue.cpp:72:22: note: in expansion of macro ‘NUCLEOTIDE_MATRIX_FILE’ 72 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); | ^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro aarch64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o ../utils/overlay utils/overlay.c -Wl,-z,relro utils/overlay.c: In function ‘read_align’: utils/overlay.c:119:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 119 | if (!isspace(currchar)) { | ^~~~~~~ utils/overlay.c:120:19: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 120 | checkchar = toupper(currchar); | ^~~~~~~ utils/overlay.c:134:5: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 134 | strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/overlay.c:134:45: note: length computed here 134 | strncpy(allseqs[target]->seqname, temp, strlen(temp)+1); | ^~~~~~~~~~~~ (cd glocal; make LDFLAGS=-Wl,-z,relro) make[3]: Entering directory '/<>/src/glocal' aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c glocal.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c io.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c rightinfluence.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c leftinfluence.cpp -Wl,-z,relro aarch64-linux-gnu-g++ -Wno-deprecated -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -O3 -I./ -c score.cpp -Wl,-z,relro aarch64-linux-gnu-g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm make[3]: Leaving directory '/<>/src/glocal' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name flipchaos.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'lagan' in '../lagan_2.0-6_arm64.deb'. dpkg-deb: building package 'lagan-dbgsym' in '../lagan-dbgsym_2.0-6_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../lagan_2.0-6_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-18T20:45:01Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lagan_2.0-6_arm64.changes: -------------------------- Format: 1.8 Date: Fri, 17 Apr 2020 20:39:11 +0200 Source: lagan Binary: lagan lagan-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 2.0-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: lagan - highly parametrizable pairwise global genome sequence aligner Closes: 957415 Changes: lagan (2.0-6) unstable; urgency=medium . * Team upload . [ Nilesh Patra ] * Add patch for GCC-10 Closes: #957415 . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 6d53cf26b7a9a07c49de9385f337715bbc8120b5 790620 lagan-dbgsym_2.0-6_arm64.deb b6d12ad6b1bf450f0879b1cf22ceffdb1ad64519 4694 lagan_2.0-6_arm64.buildinfo 337a829bff25d072382e60cff9ab14c8f7389fca 173480 lagan_2.0-6_arm64.deb Checksums-Sha256: 085621a52d9a57807cbcb28a98b9c1a2e89a12ef5b55e55305406adaab6d2cde 790620 lagan-dbgsym_2.0-6_arm64.deb 8fe32b429e7206f48fb8f6bc3345717192e5d41aec02e8aae21846012958a826 4694 lagan_2.0-6_arm64.buildinfo 0c6cddb7c7f5315cf210b4fb066828b2cf80314f8d95bd420fea639c9652c19e 173480 lagan_2.0-6_arm64.deb Files: 8aca055bf1e80557c86c94f23cdf1dd3 790620 debug optional lagan-dbgsym_2.0-6_arm64.deb c6c0b183c3505f25f350ef1060bdd443 4694 science optional lagan_2.0-6_arm64.buildinfo a0b5c1fb8a8f01d0f155e497b40530d3 173480 science optional lagan_2.0-6_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: lagan Binary: lagan Architecture: arm64 Version: 2.0-6 Checksums-Md5: 8aca055bf1e80557c86c94f23cdf1dd3 790620 lagan-dbgsym_2.0-6_arm64.deb a0b5c1fb8a8f01d0f155e497b40530d3 173480 lagan_2.0-6_arm64.deb Checksums-Sha1: 6d53cf26b7a9a07c49de9385f337715bbc8120b5 790620 lagan-dbgsym_2.0-6_arm64.deb 337a829bff25d072382e60cff9ab14c8f7389fca 173480 lagan_2.0-6_arm64.deb Checksums-Sha256: 085621a52d9a57807cbcb28a98b9c1a2e89a12ef5b55e55305406adaab6d2cde 790620 lagan-dbgsym_2.0-6_arm64.deb 0c6cddb7c7f5315cf210b4fb066828b2cf80314f8d95bd420fea639c9652c19e 173480 lagan_2.0-6_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 18 Apr 2020 20:45:01 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-6), binutils-common (= 2.34-6), binutils-x86-64-linux-gnu (= 2.34-6), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-9 (= 9.3.0-10), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.3.0-10), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200418-1), gcc-9 (= 9.3.0-10), gcc-9-base (= 9.3.0-10), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-10), libatomic1 (= 10-20200418-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.34-6), libblkid1 (= 2.34-0.1), libboost-dev (= 1.67.0.2+b1), libboost1.67-dev (= 1.67.0-17+b1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.30-4), libc-dev-bin (= 2.30-4), libc6 (= 2.30-4), libc6-dev (= 2.30-4), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200418-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.34-6), libctf0 (= 2.34-6), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 13), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-10), libgcc-s1 (= 10-20200418-1), libgcc1 (= 1:10-20200418-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200418-1), libgpg-error0 (= 1.37-1), libicu63 (= 63.2-3), libisl22 (= 0.22.1-1), libitm1 (= 10-20200418-1), liblsan0 (= 10-20200418-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncursesw6 (= 6.2-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-10), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10-20200418-1), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.0-1+b3), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.3.0-10), libstdc++6 (= 10-20200418-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.4-4), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200418-1), libubsan1 (= 10-20200418-1), libuchardet0 (= 0.0.6-3), libudev1 (= 245.4-4), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.10+dfsg-5), linux-libc-dev (= 5.5.17-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-10), perl-base (= 5.30.0-10), perl-modules-5.30 (= 5.30.0-10), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587148751" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lagan-dbgsym_2.0-6_arm64.deb ---------------------------- new Debian package, version 2.0. size 790620 bytes: control archive=1640 bytes. 1261 bytes, 12 lines control 2521 bytes, 24 lines md5sums Package: lagan-dbgsym Source: lagan Version: 2.0-6 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 1011 Depends: lagan (= 2.0-6) Section: debug Priority: optional Description: debug symbols for lagan Build-Ids: 12e1f00e9db2b4c86663b4c83b47e7816cb64061 1371823ce7390296da94d8c8dfa67a5d89d02b41 20e2b9cc619d7798d47bb2e9012abefba37543e7 29e03046634f76c08fceef3033fa62478e5aa8d4 2fb0bffdfa500cd0df36ce69fbe95cb8072ec48b 306c74b6488790541ad1940cb2406e787fd9f229 30dcb66795fdd0e579cb1189d8d444440ab3b49d 3a220bc7f77e0f61579135f8f6553c4a706f6bc2 3af3c1e0c204b84324909a91408730579b7e4062 3b3e92de226921205fbeac79f899428585f67ab8 3cc4b4d13ebe33cd7578bd5a3b7a627130cf5d8c 3d36a9dd6e8a5b1e7e2cd443b86a10863fedd3d4 4d479ac93537c61743a342e230977478e921bad7 6cda69cd908cec2838678e72815a076aa98c21b9 6f13512a6708304a6637db0482863623832f6457 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root/root 16848 2020-04-17 18:39 ./usr/lib/debug/.dwz/aarch64-linux-gnu/lagan.debug drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-17 18:39 ./usr/share/doc/lagan-dbgsym -> lagan lagan_2.0-6_arm64.deb --------------------- new Debian package, version 2.0. size 173480 bytes: control archive=2360 bytes. 803 bytes, 17 lines control 3749 bytes, 60 lines md5sums Package: lagan Version: 2.0-6 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 736 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Description: highly parametrizable pairwise global genome sequence aligner Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. . Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric. drwxr-xr-x root/root 0 2020-04-17 18:39 ./ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/bin/ -rwxr-xr-x root/root 3110 2020-04-17 18:39 ./usr/bin/anal_gloc.pl -rwxr-xr-x root/root 14696 2020-04-17 18:39 ./usr/bin/anchors -rwxr-xr-x root/root 51864 2020-04-17 18:39 ./usr/bin/glocal -rwxr-xr-x root/root 6255 2020-04-17 18:39 ./usr/bin/lagan.pl lrwxrwxrwx root/root 0 2020-04-17 18:39 ./usr/bin/lagan_chaos -> ../lib/lagan/bin/chaos -rwxr-xr-x root/root 59952 2020-04-17 18:39 ./usr/bin/mlagan -rwxr-xr-x root/root 35296 2020-04-17 18:39 ./usr/bin/order -rwxr-xr-x root/root 64040 2020-04-17 18:39 ./usr/bin/prolagan -rwxr-xr-x root/root 9417 2020-04-17 18:39 ./usr/bin/rechaos.pl -rwxr-xr-x root/root 1146 2006-09-14 20:40 ./usr/bin/slagan-mfa.pl -rwxr-xr-x root/root 5266 2006-09-14 20:40 ./usr/bin/slagan.pl -rwxr-xr-x root/root 72331 2006-09-14 20:40 ./usr/bin/supermap.pl -rwxr-xr-x root/root 1642 2006-09-14 20:40 ./usr/bin/xmfa2mfa.pl drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/lib/lagan/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/lib/lagan/bin/ -rwxr-xr-x root/root 47680 2020-04-17 18:39 ./usr/lib/lagan/bin/chaos -rw-r--r-- root/root 1899 2006-09-14 20:40 ./usr/lib/lagan/blosum62.txt -rw-r--r-- root/root 3003 2006-09-14 20:40 ./usr/lib/lagan/blosum62s.txt -rw-r--r-- root/root 234 2006-09-14 20:40 ./usr/lib/lagan/nucmatrix.txt drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/lib/lagan/utils/ -rwxr-xr-x root/root 39584 2020-04-17 18:39 ./usr/lib/lagan/utils/Glue -rw-r--r-- root/root 12736 2020-04-17 18:39 ./usr/lib/lagan/utils/Utils.pm -rwxr-xr-x root/root 10592 2020-04-17 18:39 ./usr/lib/lagan/utils/bin2bl -rwxr-xr-x root/root 10496 2020-04-17 18:39 ./usr/lib/lagan/utils/bin2mf -rwxr-xr-x root/root 10584 2020-04-17 18:39 ./usr/lib/lagan/utils/cextract -rwxr-xr-x root/root 7056 2020-04-17 18:39 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2020-04-17 18:39 ./usr/share/doc/lagan/ -rw-r--r-- root/root 812 2020-04-17 18:39 ./usr/share/doc/lagan/README.Debian -rw-r--r-- root/root 3832 2006-09-14 21:23 ./usr/share/doc/lagan/README.FIRST -rw-r--r-- root/root 3569 2006-09-14 20:40 ./usr/share/doc/lagan/README.chaos.gz -rw-r--r-- root/root 2929 2006-09-14 23:12 ./usr/share/doc/lagan/README.lagan -rw-r--r-- root/root 2982 2006-09-14 21:29 ./usr/share/doc/lagan/README.mlagan -rw-r--r-- root/root 2681 2006-09-14 23:14 ./usr/share/doc/lagan/README.shuffle -rw-r--r-- root/root 2858 2006-09-14 20:40 ./usr/share/doc/lagan/README.tools.gz -rw-r--r-- root/root 1057 2020-04-17 18:39 ./usr/share/doc/lagan/changelog.Debian.gz -rw-r--r-- root/root 1203 2020-04-17 18:39 ./usr/share/doc/lagan/copyright drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/doc/lagan/examples/ -rw-r--r-- root/root 1218 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.fasta -rw-r--r-- root/root 961 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.params -rw-r--r-- root/root 177 2006-09-14 20:40 ./usr/share/doc/lagan/examples/test.score drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1108 2020-04-17 18:39 ./usr/share/lintian/overrides/lagan drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-17 18:39 ./usr/share/man/man1/ -rw-r--r-- root/root 752 2020-04-17 18:39 ./usr/share/man/man1/mlagan.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [539 B] Get:5 copy:/<>/apt_archive ./ Packages [624 B] Fetched 2126 B in 0s (80.5 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcpanel-json-xs-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 9364 kB of archives. After this operation, 26.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian 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amd64 0.14-1+b2 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.011+ds-1 [106 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.011+ds-1 [108 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010001-1 [338 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.66.0 [1294 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9364 kB in 0s (48.0 MB/s) Selecting previously unselected package readline-common. (Reading database ... 34714 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.30-4) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 10856 Build-Time: 27 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 19 Job: lagan_2.0-6 Lintian: pass Machine Architecture: amd64 Package: lagan Package-Time: 58 Source-Version: 2.0-6 Space: 10856 Status: successful Version: 2.0-6 -------------------------------------------------------------------------------- Finished at 2020-04-18T20:45:01Z Build needed 00:00:58, 10856k disk space