sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | lagan 2.0-8 (amd64) Fri, 11 Mar 2022 09:14:32 +0000 | +==============================================================================+ Package: lagan Version: 2.0-8 Source Version: 2.0-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-5933a4aa-9298-440c-b82c-5d0b0af6d68f' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-V7rdfT/resolver-NANOF0' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://mirror.einval.org/debian sid InRelease Get:2 http://mirror.einval.org/debian sid/main amd64 Packages [9050 kB] Fetched 9050 kB in 3s (3380 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lagan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lagan.git Please use: git clone https://salsa.debian.org/med-team/lagan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 205 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main lagan 2.0-8 (dsc) [1977 B] Get:2 http://mirror.einval.org/debian sid/main lagan 2.0-8 (tar) [193 kB] Get:3 http://mirror.einval.org/debian sid/main lagan 2.0-8 (diff) [9608 B] Fetched 205 kB in 0s (3675 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lagan-V7rdfT/lagan-2.0' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-V7rdfT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1862 B in 0s (41.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-12-base:amd64 gcc-12-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost1.74-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:amd64 libboost1.74-doc:amd64 libboost-atomic1.74-dev:amd64 libboost-chrono1.74-dev:amd64 libboost-container1.74-dev:amd64 libboost-context1.74-dev:amd64 libboost-contract1.74-dev:amd64 libboost-coroutine1.74-dev:amd64 libboost-date-time1.74-dev:amd64 libboost-exception1.74-dev:amd64 libboost-fiber1.74-dev:amd64 libboost-filesystem1.74-dev:amd64 libboost-graph1.74-dev:amd64 libboost-graph-parallel1.74-dev:amd64 libboost-iostreams1.74-dev:amd64 libboost-locale1.74-dev:amd64 libboost-log1.74-dev:amd64 libboost-math1.74-dev:amd64 libboost-mpi1.74-dev:amd64 libboost-mpi-python1.74-dev:amd64 libboost-numpy1.74-dev:amd64 libboost-program-options1.74-dev:amd64 libboost-python1.74-dev:amd64 libboost-random1.74-dev:amd64 libboost-regex1.74-dev:amd64 libboost-serialization1.74-dev:amd64 libboost-stacktrace1.74-dev:amd64 libboost-system1.74-dev:amd64 libboost-test1.74-dev:amd64 libboost-thread1.74-dev:amd64 libboost-timer1.74-dev:amd64 libboost-type-erasure1.74-dev:amd64 libboost-wave1.74-dev:amd64 libboost1.74-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 libboost-nowide1.74-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-12-base:amd64 gcc-12-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:amd64 libasan6-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost1.74-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-11-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu67 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl1.1:amd64 libstdc++-11-dev:amd64 libstdc++-11-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan0-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12-20220302-1 [206 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-2 [295 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-2 [124 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-2 [66.8 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.3-1+b1 [145 kB] Get:12 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libasan6-amd64-cross all 11.2.0-18cross1 [2043 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 12-20220222-1cross1 [967 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.2.0-18cross1 [2009 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12-20220222-1cross1 [575 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12-20220222-1cross1 [881 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12-20220222-1cross1 [144 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.2.0-18cross1 [2358 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.2.0-18cross1 [15.6 MB] Get:41 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B] Get:42 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.2.0-18cross1 [1961 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.2.0-18cross1 [8677 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B] Get:47 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.13+dfsg-1 [641 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:63 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.6 [193 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.186-1 [177 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:76 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.2.0-18 [208 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12-20220302-1 [50.2 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-7 [2843 kB] Get:79 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.2.0-18 [2050 kB] Get:80 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12-20220302-1 [9124 B] Get:81 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12-20220302-1 [116 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12-20220302-1 [26.1 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12-20220302-1 [968 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.2.0-18 [2016 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12-20220302-1 [617 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12-20220302-1 [882 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12-20220302-1 [145 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.2.0-18 [2360 kB] Get:89 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.16.12-1 [1508 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.27-1.1 [89.0 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.27-1.1 [118 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.19.2-2 [65.7 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.19.2-2 [113 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.1-3 [15.5 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 libssl1.1 amd64 1.1.1m-1 [1557 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.19.2-2 [363 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.19.2-2 [166 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-7 [2289 kB] Get:104 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.2.0-18 [1959 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-14 [9533 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 101 MB in 1s (77.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12375 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package gcc-12-base:amd64. Preparing to unpack .../001-gcc-12-base_12-20220302-1_amd64.deb ... Unpacking gcc-12-base:amd64 (12-20220302-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.41-2_arm64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../004-libmagic1_1%3a5.41-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.41-2_arm64.deb ... Unpacking file (1:5.41-2) ... 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Setting up libatomic1-amd64-cross (12-20220222-1cross1) ... Setting up libsigsegv2:arm64 (2.14-1) ... Setting up libquadmath0-amd64-cross (12-20220222-1cross1) ... Setting up autopoint (0.21-4) ... Setting up libc6-amd64-cross (2.33-1cross1) ... Setting up gcc-11-cross-base (11.2.0-18cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-s1-amd64-cross (12-20220222-1cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.13+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libasan6-amd64-cross (11.2.0-18cross1) ... Setting up binutils-x86-64-linux-gnu (2.38-2) ... Setting up libstdc++6-amd64-cross (12-20220222-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up liblsan0-amd64-cross (12-20220222-1cross1) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libtsan0-amd64-cross (11.2.0-18cross1) ... Setting up cpp-11-x86-64-linux-gnu (11.2.0-18cross1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-amd64-cross (12-20220222-1cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-x86-64-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-11-dev-amd64-cross (11.2.0-18cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up gcc-11-x86-64-linux-gnu (11.2.0-18cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-11-dev-amd64-cross (11.2.0-18cross1) ... Setting up g++-11-x86-64-linux-gnu (11.2.0-18cross1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (12-20220302-1) ... Setting up libc6:amd64 (2.33-7) ... Setting up libstdc++6:amd64 (12-20220302-1) ... Setting up liblsan0:amd64 (12-20220302-1) ... Setting up libitm1:amd64 (12-20220302-1) ... Setting up libtsan0:amd64 (11.2.0-18) ... Setting up libkeyutils1:amd64 (1.6.1-3) ... Setting up libssl1.1:amd64 (1.1.1m-1) ... Setting up libcrypt1:amd64 (1:4.4.27-1.1) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12-20220302-1) ... Setting up libasan6:amd64 (11.2.0-18) ... Setting up libkrb5support0:amd64 (1.19.2-2) ... Setting up libquadmath0:amd64 (12-20220302-1) ... Setting up libatomic1:amd64 (12-20220302-1) ... Setting up libk5crypto3:amd64 (1.19.2-2) ... Setting up libubsan1:amd64 (12-20220302-1) ... Setting up libgcc-11-dev:amd64 (11.2.0-18) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1.1) ... Setting up libkrb5-3:amd64 (1.19.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.19.2-2) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.33-7) ... Setting up libstdc++-11-dev:amd64 (11.2.0-18) ... Setting up libboost1.74-dev:amd64 (1.74.0-14) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38-2 dpkg-dev_1.21.1 g++-11_11.2.0-18 gcc-11_11.2.0-18 libc6-dev_2.33-7 libstdc++-11-dev_11.2.0-18 libstdc++-11-dev-amd64-cross_11.2.0-18cross1 libstdc++6_12-20220302-1 libstdc++6-amd64-cross_12-20220222-1cross1 linux-libc-dev_5.16.12-1 Package versions: adduser_3.120 apt_2.4.1 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-2 binutils-aarch64-linux-gnu_2.38-2 binutils-common_2.38-2 binutils-x86-64-linux-gnu_2.38-2 bsdextrautils_2.37.3-1+b1 bsdutils_1:2.37.3-1+b1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-18 cpp-11-x86-64-linux-gnu_11.2.0-18cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-7 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 g++_4:11.2.0-2 g++-11_11.2.0-18 g++-11-x86-64-linux-gnu_11.2.0-18cross1 g++-x86-64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-18 gcc-11-base_11.2.0-18 gcc-11-cross-base_11.2.0-18cross1 gcc-11-x86-64-linux-gnu_11.2.0-18cross1 gcc-11-x86-64-linux-gnu-base_11.2.0-18cross1 gcc-12-base_12-20220302-1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lagan Binary: lagan Architecture: any Version: 2.0-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/lagan Vcs-Git: https://salsa.debian.org/med-team/lagan.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-dev Package-List: lagan deb science optional arch=any Checksums-Sha1: 2417bec99ff59541287ad56fdfe3abb609323949 192945 lagan_2.0.orig.tar.gz ee524bc3b4f235964b782e4d8a3105fc0fc990e5 9608 lagan_2.0-8.debian.tar.xz Checksums-Sha256: 9e3c27d0fd7a3f3448035ea51996a50e314b139942d9313858c3e4678aae1281 192945 lagan_2.0.orig.tar.gz 74810f3881f182919f4d4a0006704eab0d3a85c748f473dbe80a7514f1767608 9608 lagan_2.0-8.debian.tar.xz Files: 7027ba63a2a5115871b85e205aa36bb7 192945 lagan_2.0.orig.tar.gz f06319ff427a038421739464e1f6f090 9608 lagan_2.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmIpsxUSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxOUMP/2D6qUjFtpdk1GsdoUVBVvtrUebKA8t9 VMBw7P1SgScyYX1Owirtql9jzJ8XJfG1DNv/YzkN9OMkY+/fgw40VnfO+GgZYyCX wftf7HbpBUH12LetLbM2dh0IfWq4m+s0JBopA7J8qCPe8oWczEo8yN/Oc8YsdJXq u5aADkUTvK7GAb+FEfU4PfW7NO3+wxGxqTsWVxJzV6lv4/yam044ZbYaB3sJZdJA qLjPzRu4Em6kxGJJECmseFhpqscysfP3EFu8nqr0W1jt6/oiupYpKxkBXwjCbVtE UlzGRl4ZG5CaE+i5zX+BQFGTkBMZ0RZ6UaXcWo/f9FwBrFHuyMPUvUww9H3mMi0n YGvdBl4taHpEFzTbLbWg1pssLCXCmH68p+BLTftHQek6V2ERVAjGHkoBfMHA506B nVfAT17ZVc8pqGuKY+OeppsgoGG/w6voNGpzyplduBs6UaZ+Xuio96A7xlqe2Acg fRtw8NyBxTHVrZlfvYw5+WOhz8QVu4rN2UjI36otAJ5kXahFw/r/hXWOXXM6vfrt sEjuK620XC2mNUBppdvY2Vud1hle8XvfDQ7se94KCdJ00C5sgBF24iKa0oO/aRSd a69KpxGiYOmfhGRQ4an7xHzoMXTxaAHW7ZJB9J32o6GgBy5Q3I6zUsIkOBqyfkf1 nG8kR9HVu8DO =G8vR -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.a6ijwVeA/trustedkeys.kbx': General error gpgv: Signature made Thu Mar 10 08:13:09 2022 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./lagan_2.0-8.dsc dpkg-source: info: extracting lagan in /<> dpkg-source: info: unpacking lagan_2.0.orig.tar.gz dpkg-source: info: unpacking lagan_2.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_define_conflicting_getline.patch dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying ambiuousEnd.patch dpkg-source: info: applying addTest.patch dpkg-source: info: applying adjustPerlPaths.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc9.patch dpkg-source: info: applying gcc10.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-5933a4aa-9298-440c-b82c-5d0b0af6d68f SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package lagan dpkg-buildpackage: info: source version 2.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f chaos anchors order glocal utils/bin2bl mlagan utils/cstat utils/bin2mf utils/rc *~ utils/contigorder utils/getbounds utils/cextract utils/seqmerge utils/getlength utils/getoverlap utils/*~ utils/scorealign utils/scorecontigs mlagan.purify utils/getcontigpos utils/fa2xfa utils/Glue utils/dotplot utils/overlay make -C src clean make[3]: Entering directory '/<>/src' rm -f *.o *~ utils/*~ mlagan.purify core (cd glocal; make clean) make[4]: Entering directory '/<>/src/glocal' rm -f *.o ./*~ *~ core make[4]: Leaving directory '/<>/src/glocal' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' rm -f prolagan make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[2]: Entering directory '/<>/src' x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../anchors anchors.c skiplist.c -Wl,-z,relro anchors.c: In function ‘anchors_getline’: anchors.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets(temp, 1024, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG -Wl,-z,relro fchaos.c: In function ‘readfile’: fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args] 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:344:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function ‘readSubstMatrix’: fchaos.c:622:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 622 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:627:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 627 | fscanf (file, "%d", &gappenstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:628:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 628 | fscanf (file, "%d", &gappenext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../order order.c diagmatrix.c filebuffer.c -Wl,-z,relro order.c: In function ‘doAlign’: order.c:409:5: warning: implicit declaration of function ‘printMFAAlign’; did you mean ‘printBinAlign’? [-Wimplicit-function-declaration] 409 | printMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~ | printBinAlign order.c:411:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printTextAlign’? [-Wimplicit-function-declaration] 411 | printXMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~~ | printTextAlign order.c: In function ‘readfile’: order.c:61:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 61 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ order.c: In function ‘readSubstMatrix’: order.c:145:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:149:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:150:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro mlagan.c: In function ‘readfile’: mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function ‘main’: mlagan.c:1071:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1071 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign mlagan.c: In function ‘readfile’: mlagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro prolagan.c: In function ‘readfile’: prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function ‘main’: prolagan.c:1091:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1091 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign prolagan.c: In function ‘readfile’: prolagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2mf utils/bin2mf.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2bl utils/bin2bl.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cextract utils/cextract.c -Wl,-z,relro utils/cextract.c: In function ‘getLength’: utils/cextract.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/cextract.c: In function ‘readfile’: utils/cextract.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cstat utils/cstat.c -Wl,-z,relro utils/cstat.c: In function ‘cntlets’: utils/cstat.c:51:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 51 | if (!isspace(currchar)) { | ^~~~~~~ utils/cstat.c:6:1: note: include ‘’ or provide a declaration of ‘isspace’ 5 | #include +++ |+#include 6 | utils/cstat.c:52:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 52 | currchar = toupper(currchar); | ^~~~~~~ utils/cstat.c:52:18: note: include ‘’ or provide a declaration of ‘toupper’ utils/cstat.c:44:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/cstat.c: In function ‘readseq’: utils/cstat.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 67 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/contigorder utils/contigorder.c -Wl,-z,relro utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:15:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 15 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c:26:25: warning: unknown conversion type character ‘&’ in format [-Wformat=] 26 | fscanf (file, "%&d", &dummy); | ^ utils/contigorder.c:26:23: warning: too many arguments for format [-Wformat-extra-args] 26 | fscanf (file, "%&d", &dummy); | ^~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:52:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 52 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:19:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fscanf (file, "numContigs = %d\n", numContigs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:20:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fscanf (file, "seqLen = %d\n", seqLen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:26:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 26 | fscanf (file, "%&d", &dummy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:56:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | fscanf (file, "numContigs = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:57:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fscanf (file, "seqLen = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:63:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 63 | fscanf (file, "%d", &((*score)[i][j])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro utils/getbounds.c: In function ‘getLength’: utils/getbounds.c:18:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 18 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getlength utils/getlength.c -Wl,-z,relro utils/getlength.c: In function ‘main’: utils/getlength.c:20:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fgets (buffer, BUF_SIZE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/rc utils/rc.c -Wl,-z,relro utils/rc.c: In function ‘main’: utils/rc.c:39:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fgets(temp, 255, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro utils/seqmerge.c: In function ‘main’: utils/seqmerge.c:19:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro utils/scorealign.c: In function ‘getSequence’: utils/scorealign.c:266:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 266 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c: In function ‘readScoreMatrix’: utils/scorealign.c:415:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 415 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:423:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 423 | fscanf (file, "%1s", &(line[0])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:425:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 425 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:430:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 430 | fscanf (file, "%d%d", &gapopen, &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:63:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 63 | if (!isspace(currchar)) { | ^~~~~~~ utils/scorecontigs.c:6:1: note: include ‘’ or provide a declaration of ‘isspace’ 5 | #include +++ |+#include 6 | utils/scorecontigs.c:64:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 64 | currchar = toupper(currchar); | ^~~~~~~ utils/scorecontigs.c:64:18: note: include ‘’ or provide a declaration of ‘toupper’ utils/scorecontigs.c:65:27: warning: implicit declaration of function ‘isalpha’ [-Wimplicit-function-declaration] 65 | if (!lettersonly || isalpha (currchar)){ | ^~~~~~~ utils/scorecontigs.c:65:27: note: include ‘’ or provide a declaration of ‘isalpha’ utils/scorecontigs.c: In function ‘main’: utils/scorecontigs.c:384:38: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[1024]’ [-Wformat=] 384 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | char * char (*)[1024] utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:55:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets(temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorecontigs.c: In function ‘readseq’: utils/scorecontigs.c:81:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets (temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro utils/getcontigpos.c: In function ‘getLength’: utils/getcontigpos.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c: In function ‘readfile’: utils/getcontigpos.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro utils/fa2xfa.c: In function ‘getLength’: utils/fa2xfa.c:30:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 30 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/fa2xfa.c: In function ‘readfile’: utils/fa2xfa.c:55:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro utils/Glue.cpp: In function ‘void calculateScoreMatrix(int)’: utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 64 | char *alpha = "ATCG"; | ^~~~~~ utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" | ^~~~~~~~~~~~~~~ utils/Glue.cpp:72:22: note: in expansion of macro ‘NUCLEOTIDE_MATRIX_FILE’ 72 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); | ^~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’: utils/Glue.cpp:44:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets (line, 1024, file); | ~~~~~~^~~~~~~~~~~~~~~~~~ utils/Glue.cpp:52:12: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fscanf (file, "%1s", &(line[0])); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp:54:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fscanf (file, "%d", &k); | ~~~~~~~^~~~~~~~~~~~~~~~ utils/Glue.cpp:59:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fscanf (file, "%d%d", &gapopen, &gapcont); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro utils/dotplot.cpp: In function ‘int main(int, char**)’: utils/dotplot.cpp:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:74:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:97:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/overlay utils/overlay.c -Wl,-z,relro utils/overlay.c: In function ‘read_align’: utils/overlay.c:119:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 119 | if (!isspace(currchar)) { | ^~~~~~~ utils/overlay.c:5:1: note: include ‘’ or provide a declaration of ‘isspace’ 4 | #include +++ |+#include 5 | utils/overlay.c:120:19: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 120 | checkchar = toupper(currchar); | ^~~~~~~ utils/overlay.c:120:19: note: include ‘’ or provide a declaration of ‘toupper’ utils/overlay.c:109:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ (cd glocal; make LDFLAGS=-Wl,-z,relro) make[3]: Entering directory '/<>/src/glocal' x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -I./ -c glocal.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -I./ -c io.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -I./ -c rightinfluence.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -I./ -c leftinfluence.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -I./ -c score.cpp -Wl,-z,relro x86_64-linux-gnu-g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm make[3]: Leaving directory '/<>/src/glocal' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/lagan/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name flipchaos.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'lagan' in '../lagan_2.0-8_amd64.deb'. dpkg-deb: building package 'lagan-dbgsym' in '../lagan-dbgsym_2.0-8_amd64.deb'. dpkg-genbuildinfo --build=any -O../lagan_2.0-8_amd64.buildinfo dpkg-genchanges --build=any -O../lagan_2.0-8_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-03-11T09:16:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lagan_2.0-8_amd64.changes: -------------------------- Format: 1.8 Date: Thu, 10 Mar 2022 13:29:54 +0530 Source: lagan Binary: lagan lagan-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: lagan - highly parametrizable pairwise global genome sequence aligner Changes: lagan (2.0-8) unstable; urgency=medium . * Team Upload. * d/rules: Add -fsigned-char to DEB_CFLAGS_MAINT_APPEND (Fixed !x86 debci) * Propagate hardening flags Checksums-Sha1: 6a8fb5da7c641effd004e83e34f19f189502ae86 849960 lagan-dbgsym_2.0-8_amd64.deb 31bb53ed9bc616d345a1b4369aa6c3ca6f67e11b 4932 lagan_2.0-8_amd64.buildinfo a395d685b777ef11e8ff940e2ef117282391d59b 182304 lagan_2.0-8_amd64.deb Checksums-Sha256: ab68638911e96767f710242755fd21ff2de7dfb8d8d2a13f55eae4b5d8405ed7 849960 lagan-dbgsym_2.0-8_amd64.deb f201e88a70f9877915c61b29944b14f02b379aa59b95c901908577e93e97bed9 4932 lagan_2.0-8_amd64.buildinfo d427dd4cf70faeb56f98a08a3b05d283b0f764092da303e6b6965cc31f719caf 182304 lagan_2.0-8_amd64.deb Files: 51480bf84898c11de92505faba99937b 849960 debug optional lagan-dbgsym_2.0-8_amd64.deb 9b458219a254dd7e21e471ec566ac828 4932 science optional lagan_2.0-8_amd64.buildinfo dc0eaa43813bac6afe298c02a3f7437c 182304 science optional lagan_2.0-8_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: lagan Binary: lagan lagan-dbgsym Architecture: amd64 Version: 2.0-8 Checksums-Md5: 51480bf84898c11de92505faba99937b 849960 lagan-dbgsym_2.0-8_amd64.deb dc0eaa43813bac6afe298c02a3f7437c 182304 lagan_2.0-8_amd64.deb Checksums-Sha1: 6a8fb5da7c641effd004e83e34f19f189502ae86 849960 lagan-dbgsym_2.0-8_amd64.deb a395d685b777ef11e8ff940e2ef117282391d59b 182304 lagan_2.0-8_amd64.deb Checksums-Sha256: ab68638911e96767f710242755fd21ff2de7dfb8d8d2a13f55eae4b5d8405ed7 849960 lagan-dbgsym_2.0-8_amd64.deb d427dd4cf70faeb56f98a08a3b05d283b0f764092da303e6b6965cc31f719caf 182304 lagan_2.0-8_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 11 Mar 2022 09:16:56 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.38-2), binutils-aarch64-linux-gnu (= 2.38-2), binutils-common (= 2.38-2), bsdextrautils (= 2.37.3-1+b1), bsdutils (= 1:2.37.3-1+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-18), dash (= 0.5.11+git20210903+057cd650a4ed-7), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.7-0.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.9.0-2), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-18), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-18), gcc-11-base (= 11.2.0-18), gcc-12-base (= 12-20220302-1), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-18), libatomic1 (= 12-20220302-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1), libbinutils (= 2.38-2), libblkid1 (= 2.37.3-1+b1), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-14), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-7), libc-dev-bin (= 2.33-7), libc6 (= 2.33-7), libc6-dev (= 2.33-7), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12-20220302-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1.1), libcrypt1 (= 1:4.4.27-1.1), libctf-nobfd0 (= 2.38-2), libctf0 (= 2.38-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-18), libgcc-s1 (= 12-20220302-1), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 12-20220302-1), libgpg-error0 (= 1.43-3), libgssapi-krb5-2 (= 1.19.2-2), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 12-20220302-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblsan0 (= 12-20220302-1), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.3-1+b1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.34 (= 5.34.0-3), libpipeline1 (= 1.5.5-1), libquadmath0 (= 12-20220302-1), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b2), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.37.3-1+b1), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-18), libstdc++6 (= 12-20220302-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.3-2), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-18), libubsan1 (= 12-20220302-1), libuchardet0 (= 0.0.7-1), libudev1 (= 250.3-2), libunistring2 (= 1.0-1), libuuid1 (= 2.37.3-1+b1), libxml2 (= 2.9.13+dfsg-1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.16.12-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), patch (= 2.7.6-7), perl (= 5.34.0-3), perl-base (= 5.34.0-3), perl-modules-5.34 (= 5.34.0-3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.3-1+b1), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1646899194" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lagan-dbgsym_2.0-8_amd64.deb ---------------------------- new Debian package, version 2.0. size 849960 bytes: control archive=1640 bytes. 1261 bytes, 12 lines control 2520 bytes, 24 lines md5sums Package: lagan-dbgsym Source: lagan Version: 2.0-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1035 Depends: lagan (= 2.0-8) Section: debug Priority: optional Description: debug symbols for lagan Build-Ids: 036f57bbdb6ee548ce71d3d7f9f2f66e3f637844 040bd6a65ddb3484f0f3bb29e35aea0934d17cee 061730856cfd89731e712b6cd69dc02a039eb480 13d03c50acd131c74274a22a49d5ef252eac7ecb 26fc19e3ddf7ab2aa1fd26fa8b0844ecb772a530 2d49af3700d1a370377cff1f454321e670cf5e76 3efe7f483224921369136febb1bfa4e537408ee2 46390b30dd5cbe3323367fc1525124dc62ec84c8 54a11023763adcbe210e9009e869b48aec76937b 5b4acfa9e042e816c38c6d24e968f80511ab893a 5cff2562ef915fc7d55d834e36b75d3feecf4289 72676fcc58897a58789f58d64458fdbedfbc8b06 8558fce7a878329a2ae0fbfeb686b77b5f245c31 88f1f18e1325a6d29c32e7db30313b3010596319 9cb5980e7e2d698f03afef96edb2306c318b924f ab94c9910d853efe9bd65cbbcc66b17b7aeec74f 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./usr/lib/debug/.build-id/85/58fce7a878329a2ae0fbfeb686b77b5f245c31.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/88/ -rw-r--r-- root/root 10960 2022-03-10 07:59 ./usr/lib/debug/.build-id/88/f1f18e1325a6d29c32e7db30313b3010596319.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/9c/ -rw-r--r-- root/root 209656 2022-03-10 07:59 ./usr/lib/debug/.build-id/9c/b5980e7e2d698f03afef96edb2306c318b924f.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/ab/ -rw-r--r-- root/root 16880 2022-03-10 07:59 ./usr/lib/debug/.build-id/ab/94c9910d853efe9bd65cbbcc66b17b7aeec74f.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/ae/ -rw-r--r-- root/root 10208 2022-03-10 07:59 ./usr/lib/debug/.build-id/ae/4418aa2d55ca8e292a310e10b5d0e6896f9038.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/b7/ -rw-r--r-- root/root 12888 2022-03-10 07:59 ./usr/lib/debug/.build-id/b7/d345fbad896e88f5acb3fb2a185db5323ba561.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 312032 2022-03-10 07:59 ./usr/lib/debug/.build-id/df/5577859f7f1df111c974813be8410f5817fc18.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/e8/ -rw-r--r-- root/root 82816 2022-03-10 07:59 ./usr/lib/debug/.build-id/e8/162847c286dc716018073269ed519640e59a02.debug -rw-r--r-- root/root 15008 2022-03-10 07:59 ./usr/lib/debug/.build-id/e8/bcfecdfc4b65d9b47ee72f8e451a52fbf76bb8.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/f1/ -rw-r--r-- root/root 9240 2022-03-10 07:59 ./usr/lib/debug/.build-id/f1/1befcaf3b1efa65dbb6d5ccb8ceb1fb377b418.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.build-id/f4/ -rw-r--r-- root/root 8448 2022-03-10 07:59 ./usr/lib/debug/.build-id/f4/59781edefd9f1ae6b48bf79cfff80422c8e4e3.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 19520 2022-03-10 07:59 ./usr/lib/debug/.dwz/x86_64-linux-gnu/lagan.debug drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-03-10 07:59 ./usr/share/doc/lagan-dbgsym -> lagan lagan_2.0-8_amd64.deb --------------------- new Debian package, version 2.0. size 182304 bytes: control archive=2440 bytes. 802 bytes, 17 lines control 3953 bytes, 63 lines md5sums Package: lagan Version: 2.0-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 835 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Section: science Priority: optional Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Description: highly parametrizable pairwise global genome sequence aligner Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. . Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric. drwxr-xr-x root/root 0 2022-03-10 07:59 ./ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/bin/ -rwxr-xr-x root/root 3110 2022-03-10 07:59 ./usr/bin/anal_gloc.pl -rwxr-xr-x root/root 18936 2022-03-10 07:59 ./usr/bin/anchors -rwxr-xr-x root/root 60264 2022-03-10 07:59 ./usr/bin/glocal -rwxr-xr-x root/root 6255 2022-03-10 07:59 ./usr/bin/lagan.pl lrwxrwxrwx root/root 0 2022-03-10 07:59 ./usr/bin/lagan_chaos -> ../lib/lagan/bin/chaos -rwxr-xr-x root/root 68296 2022-03-10 07:59 ./usr/bin/mlagan -rwxr-xr-x root/root 35440 2022-03-10 07:59 ./usr/bin/order -rwxr-xr-x root/root 68288 2022-03-10 07:59 ./usr/bin/prolagan -rwxr-xr-x root/root 9417 2022-03-10 07:59 ./usr/bin/rechaos.pl -rwxr-xr-x root/root 1146 2006-09-14 20:40 ./usr/bin/slagan-mfa.pl -rwxr-xr-x root/root 5266 2006-09-14 20:40 ./usr/bin/slagan.pl -rwxr-xr-x root/root 72331 2006-09-14 20:40 ./usr/bin/supermap.pl -rwxr-xr-x root/root 1642 2006-09-14 20:40 ./usr/bin/xmfa2mfa.pl drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/lagan/ lrwxrwxrwx root/root 0 2022-03-10 07:59 ./usr/lib/lagan/anchors -> ../../bin/anchors drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/lagan/bin/ -rwxr-xr-x root/root 51920 2022-03-10 07:59 ./usr/lib/lagan/bin/chaos -rw-r--r-- root/root 1899 2006-09-14 20:40 ./usr/lib/lagan/blosum62.txt -rw-r--r-- root/root 3003 2006-09-14 20:40 ./usr/lib/lagan/blosum62s.txt lrwxrwxrwx root/root 0 2022-03-10 07:59 ./usr/lib/lagan/chaos -> bin/chaos -rw-r--r-- root/root 234 2006-09-14 20:40 ./usr/lib/lagan/nucmatrix.txt lrwxrwxrwx root/root 0 2022-03-10 07:59 ./usr/lib/lagan/rechaos.pl -> ../../bin/rechaos.pl drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/lib/lagan/utils/ -rwxr-xr-x root/root 47904 2022-03-10 07:59 ./usr/lib/lagan/utils/Glue -rw-r--r-- root/root 12736 2022-03-10 07:59 ./usr/lib/lagan/utils/Utils.pm -rwxr-xr-x root/root 14832 2022-03-10 07:59 ./usr/lib/lagan/utils/bin2bl -rwxr-xr-x root/root 14736 2022-03-10 07:59 ./usr/lib/lagan/utils/bin2mf -rwxr-xr-x root/root 14824 2022-03-10 07:59 ./usr/lib/lagan/utils/cextract -rwxr-xr-x root/root 7056 2022-03-10 07:59 ./usr/lib/lagan/utils/cmerge2.pl -rwxr-xr-x root/root 18896 2022-03-10 07:59 ./usr/lib/lagan/utils/contigorder -rwxr-xr-x root/root 18944 2022-03-10 07:59 ./usr/lib/lagan/utils/cstat -rwxr-xr-x root/root 14744 2022-03-10 07:59 ./usr/lib/lagan/utils/dotplot -rwxr-xr-x root/root 7749 2022-03-10 07:59 ./usr/lib/lagan/utils/draft.pl -rwxr-xr-x root/root 14832 2022-03-10 07:59 ./usr/lib/lagan/utils/fa2xfa -rwxr-xr-x root/root 326 2006-09-14 20:40 ./usr/lib/lagan/utils/flipchaos.pl -rwxr-xr-x root/root 14760 2022-03-10 07:59 ./usr/lib/lagan/utils/getbounds -rwxr-xr-x root/root 14808 2022-03-10 07:59 ./usr/lib/lagan/utils/getcontigpos -rwxr-xr-x root/root 14744 2022-03-10 07:59 ./usr/lib/lagan/utils/getlength -rwxr-xr-x root/root 14728 2022-03-10 07:59 ./usr/lib/lagan/utils/getoverlap -rwxr-xr-x root/root 1839 2022-03-10 07:59 ./usr/lib/lagan/utils/mextract.pl -rwxr-xr-x root/root 1617 2022-03-10 07:59 ./usr/lib/lagan/utils/mf2bin.pl -rwxr-xr-x root/root 4887 2022-03-10 07:59 ./usr/lib/lagan/utils/mpretty.pl -rwxr-xr-x root/root 1319 2022-03-10 07:59 ./usr/lib/lagan/utils/mproject.pl -rwxr-xr-x root/root 6224 2022-03-10 07:59 ./usr/lib/lagan/utils/mrun.pl -rwxr-xr-x root/root 1783 2022-03-10 07:59 ./usr/lib/lagan/utils/mrunfile.pl -rwxr-xr-x root/root 6038 2022-03-10 07:59 ./usr/lib/lagan/utils/mrunpairs.pl -rwxr-xr-x root/root 1825 2022-03-10 07:59 ./usr/lib/lagan/utils/msplit.pl -rwxr-xr-x root/root 5067 2022-03-10 07:59 ./usr/lib/lagan/utils/mviz.pl -rwxr-xr-x root/root 14832 2022-03-10 07:59 ./usr/lib/lagan/utils/overlay -rwxr-xr-x root/root 14776 2022-03-10 07:59 ./usr/lib/lagan/utils/rc -rwxr-xr-x root/root 23088 2022-03-10 07:59 ./usr/lib/lagan/utils/scorealign -rwxr-xr-x root/root 19000 2022-03-10 07:59 ./usr/lib/lagan/utils/scorecontigs -rwxr-xr-x root/root 14760 2022-03-10 07:59 ./usr/lib/lagan/utils/seqmerge drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/doc/lagan/ -rw-r--r-- root/root 812 2022-03-10 05:30 ./usr/share/doc/lagan/README.Debian -rw-r--r-- root/root 3832 2006-09-14 21:23 ./usr/share/doc/lagan/README.FIRST -rw-r--r-- root/root 3569 2006-09-14 20:40 ./usr/share/doc/lagan/README.chaos.gz -rw-r--r-- root/root 2929 2006-09-14 23:12 ./usr/share/doc/lagan/README.lagan -rw-r--r-- root/root 2982 2006-09-14 21:29 ./usr/share/doc/lagan/README.mlagan -rw-r--r-- root/root 2681 2006-09-14 23:14 ./usr/share/doc/lagan/README.shuffle -rw-r--r-- root/root 305 2022-03-10 05:30 ./usr/share/doc/lagan/README.test -rw-r--r-- root/root 2858 2006-09-14 20:40 ./usr/share/doc/lagan/README.tools.gz -rw-r--r-- root/root 1301 2022-03-10 07:59 ./usr/share/doc/lagan/changelog.Debian.gz -rw-r--r-- root/root 1203 2022-03-10 05:30 ./usr/share/doc/lagan/copyright drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/doc/lagan/examples/ -rw-r--r-- root/root 1218 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.fasta -rw-r--r-- root/root 961 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.params -rw-r--r-- root/root 177 2006-09-14 20:40 ./usr/share/doc/lagan/examples/test.score -rw-r--r-- root/root 3291 2022-03-10 05:51 ./usr/share/doc/lagan/run-mlagan-test -rw-r--r-- root/root 3295 2022-03-10 05:30 ./usr/share/doc/lagan/run-unit-test drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1012 2022-03-10 05:30 ./usr/share/lintian/overrides/lagan drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/man/ drwxr-xr-x root/root 0 2022-03-10 07:59 ./usr/share/man/man1/ -rw-r--r-- root/root 752 2022-03-10 07:59 ./usr/share/man/man1/mlagan.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [538 B] Get:5 copy:/<>/apt_archive ./ Packages [626 B] Fetched 2127 B in 0s (47.7 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 7644 kB of archives. After this operation, 22.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1 [73.8 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1 [160 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-1 [49.3 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.27-3 [540 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.38.0-1 [778 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.27-3 [885 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b4 [11.2 kB] Get:12 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all 0.48-1 [26.0 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b8 [36.4 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b2 [15.3 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b2 [25.2 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-1.1 [8552 B] Get:32 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.27-1+b1 [127 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-2+b1 [36.9 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.01-2+b1 [34.5 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-1+b6 [103 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b3 [25.8 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b4 [26.7 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:54 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:55 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:61 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b4 [11.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b2 [13.5 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b8 [17.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.023+ds-1 [95.0 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.023+ds-1 [97.9 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.22-1 [50.3 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b3 [27.2 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b9 [8660 B] Get:89 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b4 [74.7 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.23-1 [86.3 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7644 kB in 0s (39.8 MB/s) Selecting previously unselected package readline-common. (Reading database ... 34136 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1.2-1_all.deb ... Unpacking readline-common (8.1.2-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1.2-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1.2-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.27-3_arm64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../005-libsqlite3-0_3.38.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.38.0-1) ... Selecting previously unselected package gpg. 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Unpacking libdevel-callchecker-perl (0.008-1+b3) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../012-libparams-classify-perl_0.015-1+b4_arm64.deb ... Unpacking libparams-classify-perl (0.015-1+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../013-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../014-libtry-tiny-perl_0.31-1_all.deb ... Unpacking libtry-tiny-perl (0.31-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../015-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../016-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../017-libvariable-magic-perl_0.62-1+b4_arm64.deb ... Unpacking libvariable-magic-perl (0.62-1+b4) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../018-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../019-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../020-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../021-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../022-libclass-xsaccessor-perl_1.19-3+b8_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b8) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../023-libclone-perl_0.45-1+b2_arm64.deb ... Unpacking libclone-perl (0.45-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../024-libconfig-tiny-perl_2.28-1_all.deb ... Unpacking libconfig-tiny-perl (2.28-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../025-libparams-util-perl_1.102-1+b2_arm64.deb ... Unpacking libparams-util-perl (1.102-1+b2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../026-libsub-install-perl_0.928-1.1_all.deb ... Unpacking libsub-install-perl (0.928-1.1) ... Selecting previously unselected package libdata-optlist-perl. 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Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../033-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../034-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../035-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../036-liblist-moreutils-xs-perl_0.430-2+b1_arm64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2+b1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../037-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... 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Unpacking libemail-address-xs-perl (1.04-1+b4) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../049-libipc-system-simple-perl_1.30-1_all.deb ... Unpacking libipc-system-simple-perl (1.30-1) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../050-libfile-basedir-perl_0.09-1_all.deb ... Unpacking libfile-basedir-perl (0.09-1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../051-libnumber-compare-perl_0.03-2_all.deb ... Unpacking libnumber-compare-perl (0.03-2) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../052-libtext-glob-perl_0.11-2_all.deb ... Unpacking libtext-glob-perl (0.11-2) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../053-libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../054-libfont-ttf-perl_1.06-1.1_all.deb ... Unpacking libfont-ttf-perl (1.06-1.1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../055-libhtml-html5-entities-perl_0.004-1.1_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-1.1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../056-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../057-libio-interactive-perl_1.023-1_all.deb ... Unpacking libio-interactive-perl (1.023-1) ... Selecting previously unselected package libio-prompt-tiny-perl. Preparing to unpack .../058-libio-prompt-tiny-perl_0.003-1_all.deb ... Unpacking libio-prompt-tiny-perl (0.003-1) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../059-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../060-libjson-maybexs-perl_1.004003-1_all.deb ... Unpacking libjson-maybexs-perl (1.004003-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../061-liblist-compare-perl_0.55-1_all.deb ... Unpacking liblist-compare-perl (0.55-1) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../062-liblist-someutils-perl_0.58-1_all.deb ... Unpacking liblist-someutils-perl (0.58-1) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../063-liblist-utilsby-perl_0.11-1_all.deb ... Unpacking liblist-utilsby-perl (0.11-1) ... Selecting previously unselected package liblzo2-2:arm64. Preparing to unpack .../064-liblzo2-2_2.10-2_arm64.deb ... Unpacking liblzo2-2:arm64 (2.10-2) ... Selecting previously unselected package libmarkdown2:arm64. Preparing to unpack .../065-libmarkdown2_2.2.7-2_arm64.deb ... Unpacking libmarkdown2:arm64 (2.2.7-2) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../066-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../067-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../068-libmoo-perl_2.005004-3_all.deb ... Unpacking libmoo-perl (2.005004-3) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../069-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../070-libmoox-aliases-perl_0.001006-1.1_all.deb ... Unpacking libmoox-aliases-perl (0.001006-1.1) ... 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Setting up liblist-utilsby-perl (0.11-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-1+b6) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.22-1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up libio-prompt-tiny-perl (0.003-1) ... Setting up lzip (1.23-1) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b4) ... Setting up libb-hooks-op-check-perl (0.22-1+b4) ... Setting up liblist-moreutils-xs-perl (0.430-2+b1) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-1) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b9) ... Setting up libperlio-gzip-perl (0.19-1+b8) ... Setting up readline-common (8.1.2-1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.023+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1.2-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up gpgconf (2.2.27-3) ... Setting up gpg (2.2.27-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b4) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libconst-fast-perl (0.014-1.1) ... Setting up libdata-dpath-perl (0.58-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 10228 Build-Time: 79 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 41 Job: lagan_2.0-8 Lintian: pass Machine Architecture: arm64 Package: lagan Package-Time: 145 Source-Version: 2.0-8 Space: 10228 Status: successful Version: 2.0-8 -------------------------------------------------------------------------------- Finished at 2022-03-11T09:16:57Z Build needed 00:02:25, 10228k disk space