sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | lagan 2.0-9 (amd64) Thu, 25 Aug 2022 17:13:50 +0000 | +==============================================================================+ Package: lagan Version: 2.0-9 Source Version: 2.0-9 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-58d140b1-b0df-46cc-b5d2-843eccc46e46' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-lSWKtW/resolver-5wyTbb' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [192 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [9347 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9893 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9197 kB] Fetched 28.6 MB in 7s (3839 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lagan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lagan.git Please use: git clone https://salsa.debian.org/med-team/lagan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 205 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main lagan 2.0-9 (dsc) [1977 B] Get:2 http://mirror.einval.org/debian sid/main lagan 2.0-9 (tar) [193 kB] Get:3 http://mirror.einval.org/debian sid/main lagan 2.0-9 (diff) [9892 B] Fetched 205 kB in 0s (3347 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lagan-lSWKtW/lagan-2.0' with '<>' I: NOTICE: Log filtering will replace 'build/lagan-lSWKtW' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [408 B] Get:5 copy:/<>/apt_archive ./ Packages [497 B] Fetched 1862 B in 0s (44.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost1.74-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libelf1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libip4tc2 libitm1:amd64 libitm1-amd64-cross libjson-c5 libk5crypto3:amd64 libkeyutils1:amd64 libkmod2 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libssl3:amd64 libstdc++-11-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsystemd-shared libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils systemd ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-x86-64-linux-gnu gcc-12-doc gcc-12-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc:amd64 libboost1.74-doc:amd64 libboost-atomic1.74-dev:amd64 libboost-chrono1.74-dev:amd64 libboost-container1.74-dev:amd64 libboost-context1.74-dev:amd64 libboost-contract1.74-dev:amd64 libboost-coroutine1.74-dev:amd64 libboost-date-time1.74-dev:amd64 libboost-exception1.74-dev:amd64 libboost-fiber1.74-dev:amd64 libboost-filesystem1.74-dev:amd64 libboost-graph1.74-dev:amd64 libboost-graph-parallel1.74-dev:amd64 libboost-iostreams1.74-dev:amd64 libboost-locale1.74-dev:amd64 libboost-log1.74-dev:amd64 libboost-math1.74-dev:amd64 libboost-mpi1.74-dev:amd64 libboost-mpi-python1.74-dev:amd64 libboost-numpy1.74-dev:amd64 libboost-program-options1.74-dev:amd64 libboost-python1.74-dev:amd64 libboost-random1.74-dev:amd64 libboost-regex1.74-dev:amd64 libboost-serialization1.74-dev:amd64 libboost-stacktrace1.74-dev:amd64 libboost-system1.74-dev:amd64 libboost-test1.74-dev:amd64 libboost-thread1.74-dev:amd64 libboost-timer1.74-dev:amd64 libboost-type-erasure1.74-dev:amd64 libboost-wave1.74-dev:amd64 libboost1.74-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 libboost-nowide1.74-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-11-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 policykit-1 Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-12-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-base:amd64 gcc-12-base:amd64 gcc-12-cross-base gcc-12-x86-64-linux-gnu gcc-12-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libboost-dev:amd64 libboost1.74-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libelf1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:amd64 libgcc-12-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libip4tc2 libitm1:amd64 libitm1-amd64-cross libjson-c5 libk5crypto3:amd64 libkeyutils1:amd64 libkmod2 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libssl3:amd64 libstdc++-11-dev:amd64 libstdc++-12-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libsystemd-shared libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils systemd ucf 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 564 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian sid/main arm64 libargon2-1 arm64 0~20171227-0.3 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 dmsetup arm64 2:1.02.185-1 [85.8 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-1 [126 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libjson-c5 arm64 0.16-1 [42.7 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libcryptsetup12 arm64 2:2.5.0-2 [239 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libfdisk1 arm64 2.38.1-1 [239 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libkmod2 arm64 30+20220630-3 [56.0 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 libapparmor1 arm64 3.0.7-1 [102 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libip4tc2 arm64 1.8.8-1 [34.3 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libsystemd-shared arm64 251.4-1 [1523 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 systemd arm64 251.4-1 [2708 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-8 [173 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38.1-1 [145 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-2 [37.3 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-2 [1393 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.19-1 [280 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-8 [510 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu-base arm64 12.2.0-1cross1 [208 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 cpp-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [8764 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:12.1.0-3 [17.1 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 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libc6-amd64-cross all 2.34-3cross1 [1505 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12.2.0-1cross1 [570 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12.2.0-1cross1 [882 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12.2.0-1cross1 [144 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libgcc-12-dev-amd64-cross all 12.2.0-1cross1 [2438 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 gcc-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [17.4 MB] Get:49 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:12.1.0-3 [1456 B] Get:50 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.18.16-1cross1 [1740 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.34-3cross1 [1891 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libstdc++-12-dev-amd64-cross all 12.2.0-1cross1 [2027 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 g++-12-x86-64-linux-gnu arm64 12.2.0-1cross1 [9596 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:12.1.0-3 [1176 B] Get:55 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1+b1 [640 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1 [326 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.27-1 [17.3 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-amd64 all 12.9 [6708 B] Get:71 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.9 [195 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-3 [10.4 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-1 [178 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-8 [1262 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.9 [1070 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 gcc-11-base amd64 11.3.0-5 [209 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-1 [208 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-1 [50.3 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.34-5 [2765 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 libasan6 amd64 11.3.0-5 [2050 kB] Get:89 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12.2.0-1 [9324 B] Get:90 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12.2.0-1 [116 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12.2.0-1 [26.1 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12.2.0-1 [969 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libtsan0 amd64 11.3.0-5 [2017 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-1 [613 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12.2.0-1 [883 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-1 [145 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 libgcc-11-dev amd64 11.3.0-5 [2361 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.18.16-1 [1617 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-2 [89.3 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-2 [118 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:104 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:105 http://mirror.einval.org/debian sid/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:106 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:107 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:108 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:109 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:110 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:111 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:112 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.34-5 [1896 kB] Get:113 http://mirror.einval.org/debian sid/main amd64 libstdc++-11-dev amd64 11.3.0-5 [1970 kB] Get:114 http://mirror.einval.org/debian sid/main amd64 libboost1.74-dev amd64 1.74.0-16.1+b1 [9541 kB] Get:115 http://mirror.einval.org/debian sid/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 1s (82.6 MB/s) Selecting previously unselected package libargon2-1:arm64. 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Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-8) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-1) ... Setting up libgomp1-amd64-cross (12.2.0-1cross1) ... Setting up gcc-12-base:amd64 (12.2.0-1) ... Setting up libitm1-amd64-cross (12.2.0-1cross1) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libatomic1-amd64-cross (12.2.0-1cross1) ... Setting up libquadmath0-amd64-cross (12.2.0-1cross1) ... Setting up autopoint (0.21-8) ... Setting up libc6-amd64-cross (2.34-3cross1) ... Setting up autoconf (2.71-2) ... Setting up libfdisk1:arm64 (2.38.1-1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libgcc-s1-amd64-cross (12.2.0-1cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:arm64 (0.187-1) ... Setting up libjson-c5:arm64 (0.16-1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libkmod2:arm64 (30+20220630-3) ... Setting up gcc-12-x86-64-linux-gnu-base:arm64 (12.2.0-1cross1) ... Setting up binutils-x86-64-linux-gnu (2.38.90.20220713-2) ... Setting up cpp-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up libstdc++6-amd64-cross (12.2.0-1cross1) ... Setting up cpp-x86-64-linux-gnu (4:12.1.0-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-8) ... Setting up libtool (2.4.7-4) ... Setting up libasan8-amd64-cross (12.2.0-1cross1) ... Setting up liblsan0-amd64-cross (12.2.0-1cross1) ... Setting up libc6-dev-amd64-cross (2.34-3cross1) ... Setting up libtsan2-amd64-cross (12.2.0-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libsystemd-shared:arm64 (251.4-1) ... Setting up libubsan1-amd64-cross (12.2.0-1cross1) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libgcc-12-dev-amd64-cross (12.2.0-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libstdc++-12-dev-amd64-cross (12.2.0-1cross1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up gcc-x86-64-linux-gnu (4:12.1.0-3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-x86-64-linux-gnu (12.2.0-1cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:12.1.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.185-1) ... Setting up dmsetup (2:1.02.185-1) ... Setting up libcryptsetup12:arm64 (2:2.5.0-2) ... Setting up systemd (251.4-1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libgcc-s1:amd64 (12.2.0-1) ... Setting up libc6:amd64 (2.34-5) ... Setting up libstdc++6:amd64 (12.2.0-1) ... Setting up liblsan0:amd64 (12.2.0-1) ... Setting up libitm1:amd64 (12.2.0-1) ... Setting up libtsan0:amd64 (11.3.0-5) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libssl3:amd64 (3.0.5-2) ... Setting up debhelper (13.9) ... Setting up libcrypt1:amd64 (1:4.4.28-2) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12.2.0-1) ... Setting up libasan6:amd64 (11.3.0-5) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up libquadmath0:amd64 (12.2.0-1) ... Setting up libatomic1:amd64 (12.2.0-1) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up libubsan1:amd64 (12.2.0-1) ... Setting up libgcc-11-dev:amd64 (11.3.0-5) ... Setting up libcrypt-dev:amd64 (1:4.4.28-2) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.34-5) ... Setting up libstdc++-11-dev:amd64 (11.3.0-5) ... Setting up libboost1.74-dev:amd64 (1.74.0-16.1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.34-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-12_12.2.0-1 gcc-12_12.2.0-1 libc6-dev_2.34-5 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-amd64-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-amd64-cross_12.2.0-1cross1 linux-libc-dev_5.18.16-1 Package versions: adduser_3.128 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.1-6.1+b1 binutils_2.38.90.20220713-2 binutils-aarch64-linux-gnu_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.1.0-3 cpp-12_12.2.0-1 cpp-12-x86-64-linux-gnu_12.2.0-1cross1 cpp-x86-64-linux-gnu_4:12.1.0-3 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dmsetup_2:1.02.185-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3 g++-12_12.2.0-1 g++-12-x86-64-linux-gnu_12.2.0-1cross1 g++-x86-64-linux-gnu_4:12.1.0-3 gcc_4:12.1.0-3 gcc-11-base_11.3.0-5 gcc-12_12.2.0-1 gcc-12-base_12.2.0-1 gcc-12-cross-base_12.2.0-1cross1 gcc-12-x86-64-linux-gnu_12.2.0-1cross1 gcc-12-x86-64-linux-gnu-base_12.2.0-1cross1 gcc-x86-64-linux-gnu_4:12.1.0-3 gettext_0.21-8 gettext-base_0.21-8 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5 libasan8_12.2.0-1 libasan8-amd64-cross_12.2.0-1cross1 libatomic1_12.2.0-1 libatomic1-amd64-cross_12.2.0-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38.1-1 libboost-dev_1.74.0.3 libboost1.74-dev_1.74.0-16.1+b1 libbz2-1.0_1.0.8-5 libc-bin_2.34-5 libc-dev-bin_2.34-5 libc6_2.34-5 libc6-amd64-cross_2.34-3cross1 libc6-dev_2.34-5 libc6-dev-amd64-cross_2.34-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9 libdebian-dpkgcross-perl_2.6.18+nmu2 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9 libelf1_0.187-1 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-5 libgcc-12-dev_12.2.0-1 libgcc-12-dev-amd64-cross_12.2.0-1cross1 libgcc-s1_12.2.0-1 libgcc-s1-amd64-cross_12.2.0-1cross1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1+b1 libgdbm6_1.23-1+b1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgomp1-amd64-cross_12.2.0-1cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-1 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-string-perl_1.08-3.1 libip4tc2_1.8.8-1 libisl23_0.25-1 libitm1_12.2.0-1 libitm1-amd64-cross_12.2.0-1cross1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-1 liblsan0-amd64-cross_12.2.0-1cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libquadmath0_12.2.0-1 libquadmath0-amd64-cross_12.2.0-1cross1 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libssl3_3.0.5-2 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-amd64-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-amd64-cross_12.2.0-1cross1 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po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.4-1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lagan Binary: lagan Architecture: any Version: 2.0-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/lagan Vcs-Git: https://salsa.debian.org/med-team/lagan.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-dev Package-List: lagan deb science optional arch=any Checksums-Sha1: 2417bec99ff59541287ad56fdfe3abb609323949 192945 lagan_2.0.orig.tar.gz aeceaa32ae0dd28bc38de25e11c6d94cc05a1808 9892 lagan_2.0-9.debian.tar.xz Checksums-Sha256: 9e3c27d0fd7a3f3448035ea51996a50e314b139942d9313858c3e4678aae1281 192945 lagan_2.0.orig.tar.gz d43a2b919a33f636a4f3a399c42d60a0b93bfec578e05331836a87a39eb30910 9892 lagan_2.0-9.debian.tar.xz Files: 7027ba63a2a5115871b85e205aa36bb7 192945 lagan_2.0.orig.tar.gz 44eca9fb7f6b27c1c2f48d61fc481594 9892 lagan_2.0-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmLveTwSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxoV4P/i4si9cGhO3UHrtjqUdRFZOqIPKvleO4 OqWCaKb4wgV6fegJWIUWBu0S0vap6zJMOioH4gRPwCysjjnriGe+NXoeA2Jws7qd K2+mSDeVv49dfjUOAlMu8lHhIxE3QxlbTyNVaQXDA0uuvvm9SruZzKcF3LNlfAdp i7SuMQICYnX2WicG4dKBpz1wbZYkiR64z02sqtlNmQgTocdCy/29gbrSA1iPnnqt DgIyUkU0ixCFmUwC636n3egzXQBgiYTggEa+i4HFnK/liwtEIRAb50U86dRBy5WZ rySEvcQMjRm/KThpUCsCyyYmafklBQu3RyEVLMgKI1+uYReEdNse4YsXZQ+r3Tae 213roC26D+weBRrH/GdMgf55Nkl1g2ePNASA3ppxFwhxW75IUzMgcIS+PVNmhJoA vXwPawr0NfLp4+IbBIf3B7aqDoWIM75xJbvJ4iv4g8g/z/nydQkE1+iFJ9bNoisC MKGHHNox9na8+cVU2GLcPFzynevPa2IvYftG1FGN/0kCrbkpnMd/Iq1y95Ebavz4 u3Bg3qzCWYYVQrDjEb8IY/OiazNyM+W2laATp2Y19jLdANUfP+GxfGoWp0gXbyIo XDNabMBehnUq0uXazDu88q5bCHdnwIgNs4LSShryOLFHPN1jiwccEu+Eebjv7USn kve7BxlCXkvZ =g5A9 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.rNZwhogH/trustedkeys.kbx': General error gpgv: Signature made Sun Aug 7 08:35:08 2022 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./lagan_2.0-9.dsc dpkg-source: info: extracting lagan in /<> dpkg-source: info: unpacking lagan_2.0.orig.tar.gz dpkg-source: info: unpacking lagan_2.0-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_define_conflicting_getline.patch dpkg-source: info: applying gcc-4.8.patch dpkg-source: info: applying ambiuousEnd.patch dpkg-source: info: applying addTest.patch dpkg-source: info: applying adjustPerlPaths.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc9.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying gcc-lto.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-58d140b1-b0df-46cc-b5d2-843eccc46e46 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package lagan dpkg-buildpackage: info: source version 2.0-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' rm -f chaos anchors order glocal utils/bin2bl mlagan utils/cstat utils/bin2mf utils/rc *~ utils/contigorder utils/getbounds utils/cextract utils/seqmerge utils/getlength utils/getoverlap utils/*~ utils/scorealign utils/scorecontigs mlagan.purify utils/getcontigpos utils/fa2xfa utils/Glue utils/dotplot utils/overlay make -C src clean make[3]: Entering directory '/<>/src' rm -f *.o *~ utils/*~ mlagan.purify core (cd glocal; make clean) make[4]: Entering directory '/<>/src/glocal' rm -f *.o ./*~ *~ core make[4]: Leaving directory '/<>/src/glocal' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>' rm -f prolagan make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build --sourcedirectory=src cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc make[2]: Entering directory '/<>/src' x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../anchors anchors.c skiplist.c -Wl,-z,relro anchors.c: In function ‘anchors_getline’: anchors.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets(temp, 1024, infile); | ^~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG -Wl,-z,relro fchaos.c: In function ‘readfile’: fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args] 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:344:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 344 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ fchaos.c: In function ‘readSubstMatrix’: fchaos.c:622:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 622 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:627:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 627 | fscanf (file, "%d", &gappenstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fchaos.c:628:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 628 | fscanf (file, "%d", &gappenext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../order order.c diagmatrix.c filebuffer.c -Wl,-z,relro order.c: In function ‘doAlign’: order.c:409:5: warning: implicit declaration of function ‘printMFAAlign’; did you mean ‘printBinAlign’? [-Wimplicit-function-declaration] 409 | printMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~ | printBinAlign order.c:411:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printTextAlign’? [-Wimplicit-function-declaration] 411 | printXMFAAlign(seq1->lets, seq2->lets, a, seq1->name, seq2->name); | ^~~~~~~~~~~~~~ | printTextAlign order.c: In function ‘readfile’: order.c:61:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 61 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ order.c: In function ‘readSubstMatrix’: order.c:145:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:149:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ order.c:150:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 150 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro mlagan.c: In function ‘readfile’: mlagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlagan.c: In function ‘main’: mlagan.c:1071:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1071 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign mlagan.c: In function ‘readfile’: mlagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro prolagan.c: In function ‘readfile’: prolagan.c:93:25: warning: too many arguments for format [-Wformat-extra-args] 93 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prolagan.c: In function ‘main’: prolagan.c:1091:5: warning: implicit declaration of function ‘printXMFAAlign’; did you mean ‘printFASTAAlign’? [-Wimplicit-function-declaration] 1091 | printXMFAAlign(outfile, final); | ^~~~~~~~~~~~~~ | printFASTAAlign prolagan.c: In function ‘readfile’: prolagan.c:79:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 79 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:603:9: warning: ‘gapcache’ is static but used in inline function ‘openGap’ which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:586:10: warning: ‘gapcache’ is static but used in inline function ‘contGap’ which is not static 586 | return gapcache[(v(other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ multial.c:581:10: warning: ‘gapcache’ is static but used in inline function ‘endGap2’ which is not static 581 | return gapcache[(v((a->numseq - a->cnts[CNTS_GS][ai] - a->cnts[CNTS_GC][ai]) + b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:576:10: warning: ‘gapcache’ is static but used in inline function ‘endGap1’ which is not static 576 | return gapcache[(v((b->numseq - b->cnts[CNTS_GS][bi] - b->cnts[CNTS_GC][bi]) + a->cnts[CNTS_GE][ai]) << 12) | | ^~~~~~~~ multial.c:570:10: warning: ‘gapcache’ is static but used in inline function ‘endGap0’ which is not static 570 | return gapcache[(v(a->cnts[CNTS_GE][ai]+b->cnts[CNTS_GE][bi])<<12) | | ^~~~~~~~ multial.c:563:10: warning: ‘matchcache’ is static but used in inline function ‘scoreOpp’ which is not static 563 | return matchcache[v(other->cnts[0][ow]) | | ^~~~~~~~~~ multial.c:556:5: warning: ‘gapcache’ is static but used in inline function ‘matchscore’ which is not static 556 | gapcache[v(a->cnts[CNTS_GS][ai] + b->cnts[CNTS_GS][bi]) | | ^~~~~~~~ multial.c:552:5: warning: ‘matchcache’ is static but used in inline function ‘matchscore’ which is not static 552 | matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | | ^~~~~~~~~~ multial.c: In function ‘readSubstMatrix’: multial.c:478:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 478 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ multial.c:486:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 486 | fscanf (file, "%d", &gapstart); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:487:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ skiplist.c: In function ‘printSLE’: skiplist.c:12:19: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘void *’ [-Wformat=] 12 | printf(" %d %x\n", tbp->index, tbp->myelem); | ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2mf utils/bin2mf.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2bl utils/bin2bl.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cextract utils/cextract.c -Wl,-z,relro utils/cextract.c: In function ‘getLength’: utils/cextract.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/cextract.c: In function ‘readfile’: utils/cextract.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cstat utils/cstat.c -Wl,-z,relro utils/cstat.c: In function ‘cntlets’: utils/cstat.c:51:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 51 | if (!isspace(currchar)) { | ^~~~~~~ utils/cstat.c:6:1: note: include ‘’ or provide a declaration of ‘isspace’ 5 | #include +++ |+#include 6 | utils/cstat.c:52:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 52 | currchar = toupper(currchar); | ^~~~~~~ utils/cstat.c:52:18: note: include ‘’ or provide a declaration of ‘toupper’ utils/cstat.c:44:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/cstat.c: In function ‘readseq’: utils/cstat.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 67 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/contigorder utils/contigorder.c -Wl,-z,relro utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:15:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 15 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c:26:25: warning: unknown conversion type character ‘&’ in format [-Wformat=] 26 | fscanf (file, "%&d", &dummy); | ^ utils/contigorder.c:26:23: warning: too many arguments for format [-Wformat-extra-args] 26 | fscanf (file, "%&d", &dummy); | ^~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:52:57: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 52 | fprintf (stderr, "contigorder: Error opening file: %s\n"); | ~^ | | | char * utils/contigorder.c: In function ‘getFileInfo’: utils/contigorder.c:19:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fscanf (file, "numContigs = %d\n", numContigs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:20:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fscanf (file, "seqLen = %d\n", seqLen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:26:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 26 | fscanf (file, "%&d", &dummy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c: In function ‘getScores’: utils/contigorder.c:56:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | fscanf (file, "numContigs = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:57:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fscanf (file, "seqLen = %*d\n"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/contigorder.c:63:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 63 | fscanf (file, "%d", &((*score)[i][j])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro utils/getbounds.c: In function ‘getLength’: utils/getbounds.c:18:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 18 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getlength utils/getlength.c -Wl,-z,relro utils/getlength.c: In function ‘main’: utils/getlength.c:20:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20 | fgets (buffer, BUF_SIZE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/rc utils/rc.c -Wl,-z,relro utils/rc.c: In function ‘main’: utils/rc.c:39:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fgets(temp, 255, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro utils/seqmerge.c: In function ‘main’: utils/seqmerge.c:19:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 19 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro utils/scorealign.c: In function ‘getSequence’: utils/scorealign.c:266:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 266 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c: In function ‘readScoreMatrix’: utils/scorealign.c:415:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 415 | fgets (line, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:423:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 423 | fscanf (file, "%1s", &(line[0])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:425:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 425 | fscanf (file, "%d", &k); | ^~~~~~~~~~~~~~~~~~~~~~~ utils/scorealign.c:430:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 430 | fscanf (file, "%d%d", &gapopen, &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:63:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 63 | if (!isspace(currchar)) { | ^~~~~~~ utils/scorecontigs.c:6:1: note: include ‘’ or provide a declaration of ‘isspace’ 5 | #include +++ |+#include 6 | utils/scorecontigs.c:64:18: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 64 | currchar = toupper(currchar); | ^~~~~~~ utils/scorecontigs.c:64:18: note: include ‘’ or provide a declaration of ‘toupper’ utils/scorecontigs.c:65:27: warning: implicit declaration of function ‘isalpha’ [-Wimplicit-function-declaration] 65 | if (!lettersonly || isalpha (currchar)){ | ^~~~~~~ utils/scorecontigs.c:65:27: note: include ‘’ or provide a declaration of ‘isalpha’ utils/scorecontigs.c: In function ‘main’: utils/scorecontigs.c:384:38: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[1024]’ [-Wformat=] 384 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | char * char (*)[1024] utils/scorecontigs.c: In function ‘cntlets’: utils/scorecontigs.c:55:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets(temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~ utils/scorecontigs.c: In function ‘readseq’: utils/scorecontigs.c:81:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fgets (temp, 1024, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro utils/getcontigpos.c: In function ‘getLength’: utils/getcontigpos.c:16:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 16 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/getcontigpos.c: In function ‘readfile’: utils/getcontigpos.c:41:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 41 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro utils/fa2xfa.c: In function ‘getLength’: utils/fa2xfa.c:30:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 30 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/fa2xfa.c: In function ‘readfile’: utils/fa2xfa.c:55:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro utils/Glue.cpp: In function ‘void calculateScoreMatrix(int)’: utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 64 | char *alpha = "ATCG"; | ^~~~~~ utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" | ^~~~~~~~~~~~~~~ utils/Glue.cpp:72:22: note: in expansion of macro ‘NUCLEOTIDE_MATRIX_FILE’ 72 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); | ^~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function ‘void readScoreMatrix(char*)’: utils/Glue.cpp:44:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44 | fgets (line, 1024, file); | ~~~~~~^~~~~~~~~~~~~~~~~~ utils/Glue.cpp:52:12: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fscanf (file, "%1s", &(line[0])); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp:54:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fscanf (file, "%d", &k); | ~~~~~~~^~~~~~~~~~~~~~~~ utils/Glue.cpp:59:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fscanf (file, "%d%d", &gapopen, &gapcont); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro utils/dotplot.cpp: In function ‘int main(int, char**)’: utils/dotplot.cpp:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:74:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ utils/dotplot.cpp:97:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets (buffer, 105, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/overlay utils/overlay.c -Wl,-z,relro utils/overlay.c: In function ‘read_align’: utils/overlay.c:119:10: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 119 | if (!isspace(currchar)) { | ^~~~~~~ utils/overlay.c:5:1: note: include ‘’ or provide a declaration of ‘isspace’ 4 | #include +++ |+#include 5 | utils/overlay.c:120:19: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] 120 | checkchar = toupper(currchar); | ^~~~~~~ utils/overlay.c:120:19: note: include ‘’ or provide a declaration of ‘toupper’ utils/overlay.c:109:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | fgets(temp, 255, input); | ^~~~~~~~~~~~~~~~~~~~~~~ (cd glocal; make LDFLAGS="-Wl,-z,relro") make[3]: Entering directory '/<>/src/glocal' x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c glocal.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c io.cpp -Wl,-z,relro io.cpp: In function ‘long long int getline(FILE*, hll*)’: io.cpp:60:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | fgets(temp, 1024, infile); | ~~~~~^~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c rightinfluence.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c leftinfluence.cpp -Wl,-z,relro x86_64-linux-gnu-g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c score.cpp -Wl,-z,relro x86_64-linux-gnu-g++ glocal.o io.o rightinfluence.o leftinfluence.o score.o -o ../../glocal -lm -Wl,-z,relro make[3]: Leaving directory '/<>/src/glocal' make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/lagan/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name flipchaos.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package lagan: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'lagan' in '../lagan_2.0-9_amd64.deb'. dpkg-deb: building package 'lagan-dbgsym' in '../lagan-dbgsym_2.0-9_amd64.deb'. dpkg-genbuildinfo --build=any -O../lagan_2.0-9_amd64.buildinfo dpkg-genchanges --build=any -O../lagan_2.0-9_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-25T17:16:27Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lagan_2.0-9_amd64.changes: -------------------------- Format: 1.8 Date: Sun, 07 Aug 2022 13:59:54 +0530 Source: lagan Binary: lagan lagan-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 2.0-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: lagan - highly parametrizable pairwise global genome sequence aligner Closes: 1015467 Changes: lagan (2.0-9) unstable; urgency=medium . * Team upload. * Propagate hardening flags in src/glocal * Add patch to fix FTBFS with lto (Closes: #1015467) * d/p/hardening.patch: quote LDFLAGS so as to pass all relevant flags in makefile w/o confusing make Checksums-Sha1: 5b01917d8191a4c8d6de9590bbe6a2f3297f99f5 848776 lagan-dbgsym_2.0-9_amd64.deb 9c91163eb4da317a05e7375817763bb69888c3ac 5616 lagan_2.0-9_amd64.buildinfo f1308ad143145a65f17d0536d935df4c67ec561c 182728 lagan_2.0-9_amd64.deb Checksums-Sha256: e5ee193542075b38892bbb6b1dd7472a23bfd290b29b3a0e1688932ee8eaecfe 848776 lagan-dbgsym_2.0-9_amd64.deb 2043fed796f4141dd73937997e7b84b2c75e308d06f464c7afd06cc47504cbd2 5616 lagan_2.0-9_amd64.buildinfo 08c367ecf662ada92309f8a4b77d3f97da05edf6d1137027bbb9904b16d528cb 182728 lagan_2.0-9_amd64.deb Files: 71518ebcf4923404f9da3f21a03038c9 848776 debug optional lagan-dbgsym_2.0-9_amd64.deb 86b3a81e86cc9a9a7fce18fb05f29883 5616 science optional lagan_2.0-9_amd64.buildinfo 5c2c75372b472270b60dc2fb46251bd1 182728 science optional lagan_2.0-9_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: lagan Binary: lagan lagan-dbgsym Architecture: amd64 Version: 2.0-9 Checksums-Md5: 71518ebcf4923404f9da3f21a03038c9 848776 lagan-dbgsym_2.0-9_amd64.deb 5c2c75372b472270b60dc2fb46251bd1 182728 lagan_2.0-9_amd64.deb Checksums-Sha1: 5b01917d8191a4c8d6de9590bbe6a2f3297f99f5 848776 lagan-dbgsym_2.0-9_amd64.deb f1308ad143145a65f17d0536d935df4c67ec561c 182728 lagan_2.0-9_amd64.deb Checksums-Sha256: e5ee193542075b38892bbb6b1dd7472a23bfd290b29b3a0e1688932ee8eaecfe 848776 lagan-dbgsym_2.0-9_amd64.deb 08c367ecf662ada92309f8a4b77d3f97da05edf6d1137027bbb9904b16d528cb 182728 lagan_2.0-9_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Thu, 25 Aug 2022 17:16:26 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.128), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.6.0), bash (= 5.1-6.1+b1), binutils (= 2.38.90.20220713-2), binutils-aarch64-linux-gnu (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), bsdextrautils (= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:12.1.0-3), cpp-12 (= 12.2.0-1), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.9), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dmsetup (= 2:1.02.185-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.1.0-3), g++-12 (= 12.2.0-1), gcc (= 4:12.1.0-3), gcc-11-base (= 11.3.0-5), gcc-12 (= 12.2.0-1), gcc-12-base (= 12.2.0-1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan6 (= 11.3.0-5), libasan8 (= 12.2.0-1), libatomic1 (= 12.2.0-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38.1-1), libboost-dev (= 1.74.0.3), libboost1.74-dev (= 1.74.0-16.1+b1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-5), libc-dev-bin (= 2.34-5), libc6 (= 2.34-5), libc6-dev (= 2.34-5), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9), libdevmapper1.02.1 (= 2:1.02.185-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-1), libfdisk1 (= 2.38.1-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5), libgcc-12-dev (= 12.2.0-1), libgcc-s1 (= 12.2.0-1), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1+b1), libgdbm6 (= 1.23-1+b1), libgmp10 (= 2:6.2.1+dfsg1-1), libgomp1 (= 12.2.0-1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libhwasan0 (= 12.2.0-1), libicu71 (= 71.1-3), libip4tc2 (= 1.8.8-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblsan0 (= 12.2.0-1), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libquadmath0 (= 12.2.0-1), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1+b1), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38.1-1), libssl3 (= 3.0.5-2), libstdc++-11-dev (= 11.3.0-5), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-1), libsystemd0 (= 251.4-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-1), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.16-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), mount (= 2.38.1-1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), systemd (= 251.4-1), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1659860994" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lagan-dbgsym_2.0-9_amd64.deb ---------------------------- new Debian package, version 2.0. size 848776 bytes: control archive=1640 bytes. 1261 bytes, 12 lines control 2520 bytes, 24 lines md5sums Package: lagan-dbgsym Source: lagan Version: 2.0-9 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1034 Depends: lagan (= 2.0-9) Section: debug Priority: optional Description: debug symbols for lagan Build-Ids: 01babcbc41ef05244c77050b8a1822e4ae694d45 039f7441befd3de36b64a8d7b0cf1087b5ca01a2 2218cb94a7be7504261c90e17e09e1648d2c4925 25e56337ff317a943335716ecc1e9645ec4cd9ae 38e0d9beb5bb5ddbb556011034102f49d2d43834 4a67639f8b879644584538b5cbf2976d56ff8986 5f602880e614f8449af29d1b622d536af078a74d 6b8c7d3f4aaff483ae2e2c9b3210cc70533e6fe4 78186cfb4915049203aa5676e490ad1c7c1716b1 7ea42ec362de98e3ea93f1b2f4ebac9c837befb8 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./usr/lib/debug/.build-id/e2/96748c4b13ed11c548c2332eff53aecf404b58.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 14680 2022-08-07 08:29 ./usr/lib/debug/.build-id/e3/96e2e96c3d7e4465eba163a32613bcff9624f5.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.build-id/ed/ -rw-r--r-- root/root 81832 2022-08-07 08:29 ./usr/lib/debug/.build-id/ed/5a9c8431cb27303bb5dc96884b52b58f6c7721.debug -rw-r--r-- root/root 12272 2022-08-07 08:29 ./usr/lib/debug/.build-id/ed/b1a3c40150fcb78f093ee30bde5e0465f88cd4.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.build-id/f6/ -rw-r--r-- root/root 11552 2022-08-07 08:29 ./usr/lib/debug/.build-id/f6/290affb1bc5c647fc4b12e626f12a1ecdcb1d3.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 7784 2022-08-07 08:29 ./usr/lib/debug/.build-id/f7/369fecb0f858d86d463fcfb85a93b59bd53bcc.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.build-id/fa/ -rw-r--r-- root/root 12792 2022-08-07 08:29 ./usr/lib/debug/.build-id/fa/20fb31145f7211288fa73f04a5da493b941f0b.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 19864 2022-08-07 08:29 ./usr/lib/debug/.dwz/x86_64-linux-gnu/lagan.debug drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-08-07 08:29 ./usr/share/doc/lagan-dbgsym -> lagan lagan_2.0-9_amd64.deb --------------------- new Debian package, version 2.0. size 182728 bytes: control archive=2440 bytes. 802 bytes, 17 lines control 3953 bytes, 63 lines md5sums Package: lagan Version: 2.0-9 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 835 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Section: science Priority: optional Homepage: http://lagan.stanford.edu/lagan_web/index.shtml Description: highly parametrizable pairwise global genome sequence aligner Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors. . Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric. drwxr-xr-x root/root 0 2022-08-07 08:29 ./ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/bin/ -rwxr-xr-x root/root 3110 2022-08-07 08:29 ./usr/bin/anal_gloc.pl -rwxr-xr-x root/root 18912 2022-08-07 08:29 ./usr/bin/anchors -rwxr-xr-x root/root 60240 2022-08-07 08:29 ./usr/bin/glocal -rwxr-xr-x root/root 6255 2022-08-07 08:29 ./usr/bin/lagan.pl lrwxrwxrwx root/root 0 2022-08-07 08:29 ./usr/bin/lagan_chaos -> ../lib/lagan/bin/chaos -rwxr-xr-x root/root 68272 2022-08-07 08:29 ./usr/bin/mlagan -rwxr-xr-x root/root 35416 2022-08-07 08:29 ./usr/bin/order -rwxr-xr-x root/root 68264 2022-08-07 08:29 ./usr/bin/prolagan -rwxr-xr-x root/root 9417 2022-08-07 08:29 ./usr/bin/rechaos.pl -rwxr-xr-x root/root 1146 2006-09-14 20:40 ./usr/bin/slagan-mfa.pl -rwxr-xr-x root/root 5266 2006-09-14 20:40 ./usr/bin/slagan.pl -rwxr-xr-x root/root 72331 2006-09-14 20:40 ./usr/bin/supermap.pl -rwxr-xr-x root/root 1642 2006-09-14 20:40 ./usr/bin/xmfa2mfa.pl drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/lagan/ lrwxrwxrwx root/root 0 2022-08-07 08:29 ./usr/lib/lagan/anchors -> ../../bin/anchors drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/lagan/bin/ -rwxr-xr-x root/root 51888 2022-08-07 08:29 ./usr/lib/lagan/bin/chaos -rw-r--r-- root/root 1899 2006-09-14 20:40 ./usr/lib/lagan/blosum62.txt -rw-r--r-- root/root 3003 2006-09-14 20:40 ./usr/lib/lagan/blosum62s.txt lrwxrwxrwx root/root 0 2022-08-07 08:29 ./usr/lib/lagan/chaos -> bin/chaos -rw-r--r-- root/root 234 2006-09-14 20:40 ./usr/lib/lagan/nucmatrix.txt lrwxrwxrwx root/root 0 2022-08-07 08:29 ./usr/lib/lagan/rechaos.pl -> ../../bin/rechaos.pl drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/lib/lagan/utils/ -rwxr-xr-x root/root 47880 2022-08-07 08:29 ./usr/lib/lagan/utils/Glue -rw-r--r-- root/root 12736 2022-08-07 08:29 ./usr/lib/lagan/utils/Utils.pm -rwxr-xr-x root/root 14808 2022-08-07 08:29 ./usr/lib/lagan/utils/bin2bl -rwxr-xr-x root/root 14712 2022-08-07 08:29 ./usr/lib/lagan/utils/bin2mf -rwxr-xr-x root/root 14800 2022-08-07 08:29 ./usr/lib/lagan/utils/cextract -rwxr-xr-x root/root 7056 2022-08-07 08:29 ./usr/lib/lagan/utils/cmerge2.pl -rwxr-xr-x root/root 18872 2022-08-07 08:29 ./usr/lib/lagan/utils/contigorder -rwxr-xr-x root/root 18920 2022-08-07 08:29 ./usr/lib/lagan/utils/cstat -rwxr-xr-x root/root 14720 2022-08-07 08:29 ./usr/lib/lagan/utils/dotplot -rwxr-xr-x root/root 7749 2022-08-07 08:29 ./usr/lib/lagan/utils/draft.pl -rwxr-xr-x root/root 14808 2022-08-07 08:29 ./usr/lib/lagan/utils/fa2xfa -rwxr-xr-x root/root 326 2006-09-14 20:40 ./usr/lib/lagan/utils/flipchaos.pl -rwxr-xr-x root/root 14736 2022-08-07 08:29 ./usr/lib/lagan/utils/getbounds -rwxr-xr-x root/root 14784 2022-08-07 08:29 ./usr/lib/lagan/utils/getcontigpos -rwxr-xr-x root/root 14720 2022-08-07 08:29 ./usr/lib/lagan/utils/getlength -rwxr-xr-x root/root 14704 2022-08-07 08:29 ./usr/lib/lagan/utils/getoverlap -rwxr-xr-x root/root 1839 2022-08-07 08:29 ./usr/lib/lagan/utils/mextract.pl -rwxr-xr-x root/root 1617 2022-08-07 08:29 ./usr/lib/lagan/utils/mf2bin.pl -rwxr-xr-x root/root 4887 2022-08-07 08:29 ./usr/lib/lagan/utils/mpretty.pl -rwxr-xr-x root/root 1319 2022-08-07 08:29 ./usr/lib/lagan/utils/mproject.pl -rwxr-xr-x root/root 6224 2022-08-07 08:29 ./usr/lib/lagan/utils/mrun.pl -rwxr-xr-x root/root 1783 2022-08-07 08:29 ./usr/lib/lagan/utils/mrunfile.pl -rwxr-xr-x root/root 6038 2022-08-07 08:29 ./usr/lib/lagan/utils/mrunpairs.pl -rwxr-xr-x root/root 1825 2022-08-07 08:29 ./usr/lib/lagan/utils/msplit.pl -rwxr-xr-x root/root 5067 2022-08-07 08:29 ./usr/lib/lagan/utils/mviz.pl -rwxr-xr-x root/root 14808 2022-08-07 08:29 ./usr/lib/lagan/utils/overlay -rwxr-xr-x root/root 14752 2022-08-07 08:29 ./usr/lib/lagan/utils/rc -rwxr-xr-x root/root 23064 2022-08-07 08:29 ./usr/lib/lagan/utils/scorealign -rwxr-xr-x root/root 18976 2022-08-07 08:29 ./usr/lib/lagan/utils/scorecontigs -rwxr-xr-x root/root 14736 2022-08-07 08:29 ./usr/lib/lagan/utils/seqmerge drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/doc/lagan/ -rw-r--r-- root/root 812 2022-03-10 05:30 ./usr/share/doc/lagan/README.Debian -rw-r--r-- root/root 3832 2006-09-14 21:23 ./usr/share/doc/lagan/README.FIRST -rw-r--r-- root/root 3569 2006-09-14 20:40 ./usr/share/doc/lagan/README.chaos.gz -rw-r--r-- root/root 2929 2006-09-14 23:12 ./usr/share/doc/lagan/README.lagan -rw-r--r-- root/root 2982 2006-09-14 21:29 ./usr/share/doc/lagan/README.mlagan -rw-r--r-- root/root 2681 2006-09-14 23:14 ./usr/share/doc/lagan/README.shuffle -rw-r--r-- root/root 305 2022-03-10 05:30 ./usr/share/doc/lagan/README.test -rw-r--r-- root/root 2858 2006-09-14 20:40 ./usr/share/doc/lagan/README.tools.gz -rw-r--r-- root/root 1412 2022-08-07 08:29 ./usr/share/doc/lagan/changelog.Debian.gz -rw-r--r-- root/root 1203 2022-03-10 05:30 ./usr/share/doc/lagan/copyright drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/doc/lagan/examples/ -rw-r--r-- root/root 1218 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.fasta -rw-r--r-- root/root 961 2006-09-14 20:40 ./usr/share/doc/lagan/examples/sample.params -rw-r--r-- root/root 177 2006-09-14 20:40 ./usr/share/doc/lagan/examples/test.score -rw-r--r-- root/root 3291 2022-03-10 05:51 ./usr/share/doc/lagan/run-mlagan-test -rw-r--r-- root/root 3295 2022-03-10 05:30 ./usr/share/doc/lagan/run-unit-test drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1012 2022-03-10 05:30 ./usr/share/lintian/overrides/lagan drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/man/ drwxr-xr-x root/root 0 2022-08-07 08:29 ./usr/share/man/man1/ -rw-r--r-- root/root 752 2022-08-07 08:29 ./usr/share/man/man1/mlagan.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [538 B] Get:5 copy:/<>/apt_archive ./ Packages [625 B] Fetched 2126 B in 0s (51.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 14.1 MB of archives. After this operation, 52.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 netbase all 6.3 [19.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1.2 [73.9 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 openssl arm64 3.0.5-2 [1389 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-4 [48.9 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1.2 [160 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.35-3 [570 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.39.2-1 [786 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.35-3 [916 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 iso-codes all 4.11.0-1 [2834 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-2 [14.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-2 [11.2 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-2 [13.1 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b3 [15.8 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-2 [25.4 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-2 [8044 B] Get:23 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-2 [44.3 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libberkeleydb-perl arm64 0.64-1+b2 [120 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.12-1 [93.7 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libhtml-parser-perl arm64 3.78-1 [103 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libcgi-pm-perl all 4.54-1 [224 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-4 [36.3 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b2 [15.3 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b2 [25.2 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-2 [11.0 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.32-1 [128 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-3 [36.7 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.02-1 [34.6 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-2 [33.7 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2 [103 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-2 [25.7 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.05-1 [28.0 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:65 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:66 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:80 http://mirror.einval.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.92-2 [338 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libwww-perl all 6.67-1 [194 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 liblz1 arm64 1.13-4 [40.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libmldbm-perl all 2.05-3 [18.8 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:103 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-2 [11.9 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-2 [13.5 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.20-1 [17.1 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.025+ds-1 [97.7 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.025+ds-1 [98.4 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.25-1 [52.2 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-2 [26.9 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-5 [8704 B] Get:120 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-2 [72.5 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libwww-mechanize-perl all 2.14-2 [120 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 plzip arm64 1.10-4 [60.7 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-27 [163 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 lintian all 2.115.2 [1416 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.1 MB in 0s (47.6 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Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up liblz1:arm64 (1.13-4) ... Setting up libberkeleydb-perl:arm64 (0.64-1+b2) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:arm64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:arm64 (3.39.2-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:arm64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:arm64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:arm64 (0.26-2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-4) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-2) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-2) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1.2-1.2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.78-1) ... Setting up gpgconf (2.2.35-3) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up gpg (2.2.35-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:arm64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.14-2) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Processing triggers for libc-bin (2.34-5) ... Processing triggers for man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for sgml-base (1.30) ... Setting up lintian (2.115.2) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 10252 Build-Time: 79 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 46 Job: lagan_2.0-9 Lintian: pass Machine Architecture: arm64 Package: lagan Package-Time: 157 Source-Version: 2.0-9 Space: 10252 Status: successful Version: 2.0-9 -------------------------------------------------------------------------------- Finished at 2022-08-25T17:16:27Z Build needed 00:02:37, 10252k disk space