sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | lambda-align2 2.0.0-6 (arm64) Sun, 29 Sep 2019 16:39:52 +0000 | +==============================================================================+ Package: lambda-align2 Version: 2.0.0-6 Source Version: 2.0.0-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-fa86c544-8820-42d6-bac0-b5229d226b1c' with '<>' I: NOTICE: Log filtering will replace 'build/lambda-align2-ta1aa1/resolver-JG75Py' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-29-0809.56.pdiff [5005 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-29-1411.33.pdiff [5821 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-29-1411.33.pdiff [5821 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-29-0809.56.pdiff [3914 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-29-1411.33.pdiff [17.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-29-1411.33.pdiff [17.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8059 kB] Fetched 8286 kB in 2s (4293 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lambda-align2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align2.git Please use: git clone https://salsa.debian.org/med-team/lambda-align2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 364 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main lambda-align2 2.0.0-6 (dsc) [1824 B] Get:2 http://debian.oregonstate.edu/debian unstable/main lambda-align2 2.0.0-6 (tar) [346 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main lambda-align2 2.0.0-6 (diff) [17.0 kB] Fetched 364 kB in 0s (26.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lambda-align2-ta1aa1/lambda-align2-2.0.0' with '<>' I: NOTICE: Log filtering will replace 'build/lambda-align2-ta1aa1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1905 B in 0s (93.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cmake cmake-data cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1 libbsd0 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db openssl po-debconf procps sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 krb5-doc krb5-user libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser ca-certificates libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:arm64 libidn2-0:arm64 ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdmainutils cmake cmake-data cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-base:arm64 gcc-9-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan5:arm64 libasan5-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libbrotli1 libbsd0 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:arm64 libgcc-9-dev-arm64-cross libgcc1:arm64 libgcc1-arm64-cross libglib2.0-0 libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2 libicu63 libio-string-perl libitm1:arm64 libitm1-arm64-cross libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps7 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.1 libstdc++-9-dev:arm64 libstdc++-9-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db openssl po-debconf procps sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 75.0 MB of archives. After this operation, 315 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-8 [193 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps7 amd64 2:3.3.15-2+b1 [62.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.15-2+b1 [259 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190909-1 [2774 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-1 [335 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-3 [267 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-1 [1533 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1 [69.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1 [106 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.48+dfsg-1 [90.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1 [226 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.39.2-1 [82.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.66.0-1 [332 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3+b1 [77.9 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.30.1-1 [116 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-8cross1 [193 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6536 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.29-1cross7 [1253 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-8cross1 [34.0 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-8cross1 [76.6 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-8cross1 [24.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-8cross1 [8640 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-8cross1 [347 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-8cross1 [122 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-8cross1 [267 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-8cross1 [416 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-8cross1 [117 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-8cross1 [888 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [6896 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1460 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.9-2cross7 [1310 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.29-1cross7 [2273 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-8cross1 [1632 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-8cross1 [7113 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-3.1 [1180 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.66-2 [103 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-8 [34.1 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.29-2 [2464 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-8 [354 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-8 [8852 B] Get:107 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-2 [46.3 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.17-1 [1230 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.29-2 [2287 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main arm64 libbz2-dev arm64 1.0.8-2 [31.5 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-8 [78.4 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-8 [24.7 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-8 [123 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-8 [274 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-8 [454 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-8 [118 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-8 [878 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-8 [1653 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1d-1 [840 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1+b1 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 75.0 MB in 1s (56.5 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13084 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Setting up linux-libc-dev:arm64 (5.2.17-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190909-1) ... Setting up cpp-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up file (1:5.37-5) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libseqan2-dev (2.4.0+dfsg-11) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libuv1:amd64 (1.30.1-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libc6-arm64-cross (2.29-1cross7) ... Setting up autopoint (0.19.8.1-9) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... Setting up linux-libc-dev-arm64-cross (5.2.9-2cross7) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up openssl (1.1.1d-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libjsoncpp1:amd64 (1.7.4-3+b1) ... Setting up gcc-9-base:arm64 (9.2.1-8) ... Setting up libatomic1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-8cross1) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up liblsan0-arm64-cross (9.2.1-8cross1) ... Setting up libgomp1-arm64-cross (9.2.1-8cross1) ... Setting up libtool (2.4.6-11) ... Setting up libarchive13:amd64 (3.4.0-1) ... Setting up libtsan0-arm64-cross (9.2.1-8cross1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1) ... Setting up m4 (1.4.18-2) ... Setting up libc6-dev-arm64-cross (2.29-1cross7) ... Setting up libasan5-arm64-cross (9.2.1-8cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libitm1-arm64-cross (9.2.1-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.66.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libubsan1-arm64-cross (9.2.1-8cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.13.4-1) ... Setting up libstdc++-9-dev-arm64-cross (9.2.1-8cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-3.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.8) ... Setting up libc6:arm64 (2.29-2) ... Setting up libc6-dev:arm64 (2.29-2) ... Setting up libbz2-1.0:arm64 (1.0.8-2) ... Setting up libitm1:arm64 (9.2.1-8) ... Setting up libbz2-dev:arm64 (1.0.8-2) ... Setting up libgcc1:arm64 (1:9.2.1-8) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:arm64 (9.2.1-8) ... Setting up dh-autoreconf (19) ... Setting up libasan5:arm64 (9.2.1-8) ... Setting up libatomic1:arm64 (9.2.1-8) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libstdc++6:arm64 (9.2.1-8) ... Setting up liblsan0:arm64 (9.2.1-8) ... Setting up libtsan0:arm64 (9.2.1-8) ... Setting up debhelper (12.6.1) ... Setting up libubsan1:arm64 (9.2.1-8) ... Setting up libgcc-9-dev:arm64 (9.2.1-8) ... Setting up libstdc++-9-dev:arm64 (9.2.1-8) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-22 g++-9_9.2.1-8 gcc-8_8.3.0-22 gcc-9_9.2.1-8 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 linux-libc-dev_5.2.17-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-aarch64-linux-gnu_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-22 cpp-9_9.2.1-8 cpp-9-aarch64-linux-gnu_9.2.1-8cross1 cpp-aarch64-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-8_8.3.0-22 g++-9_9.2.1-8 g++-9-aarch64-linux-gnu_9.2.1-8cross1 g++-aarch64-linux-gnu_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-22 gcc-8-base_8.3.0-22 gcc-9_9.2.1-8 gcc-9-aarch64-linux-gnu_9.2.1-8cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-8cross1 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 gcc-aarch64-linux-gnu_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.66-2 libarchive13_3.4.0-1 libasan5_9.2.1-8 libasan5-arm64-cross_9.2.1-8cross1 libatomic1_9.2.1-8 libatomic1-arm64-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-arm64-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-arm64-cross_2.29-1cross7 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libcurl4_7.66.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-22 libgcc-9-dev_9.2.1-8 libgcc-9-dev-arm64-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-arm64-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8 libgomp1-arm64-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-8 libitm1-arm64-cross_9.2.1-8cross1 libjsoncpp1_1.7.4-3+b1 libk5crypto3_1.17-6 libkeyutils1_1.6-6 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-8 liblsan0-arm64-cross_9.2.1-8cross1 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-22 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libnghttp2-14_1.39.2-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2+b1 libpsl5_0.20.2-2 libquadmath0_9.2.1-8 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libseqan2-dev_2.4.0+dfsg-11 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-arm64-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-arm64-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libtsan0-arm64-cross_9.2.1-8cross1 libubsan1_9.2.1-8 libubsan1-arm64-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.30.1-1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.17-1 linux-libc-dev-arm64-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 openssl_1.1.1d-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 procps_2:3.3.15-2+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-2 tar_1.30+dfsg-6+b1 tzdata_2019c-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align2 Binary: lambda-align2 Architecture: any Version: 2.0.0-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Sascha Steinbiss Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align2 Vcs-Git: https://salsa.debian.org/med-team/lambda-align2.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, ncbi-blast+, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align2 deb science optional arch=any Checksums-Sha1: 12b76d151a4b229d0b250fc6d94867eef8a33c31 345507 lambda-align2_2.0.0.orig.tar.gz 307c181a25e281325ea63b4739cf04b3454168f1 17032 lambda-align2_2.0.0-6.debian.tar.xz Checksums-Sha256: bbc23901967da7359a6d0df192609da7b454ea09cdc86c78a7ec93ca9dfc5efc 345507 lambda-align2_2.0.0.orig.tar.gz a08949a85aeab48c0b4e6b4ae1b55ad05d75363cbf060a55c41da1144c1e7b96 17032 lambda-align2_2.0.0-6.debian.tar.xz Files: 2b4b013511f34ffd1f710d2032c91d90 345507 lambda-align2_2.0.0.orig.tar.gz 417670ff62505341222abd93e3eae089 17032 lambda-align2_2.0.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAlz7r8gACgkQUfhKj+zK fglfYgf/bZ/s5ODB485wl2Mz1Uncn5UgTINVsD14QCMrv563o7UPf+N4B+wxW3+X De1K6UgtBzkrFKqKYPI75RvMyiHlapV2ZEarGC/wKKiwYHPyJIbJlgdVv8j6P8AR sgMCbIyN9OgBCwHJbt9BGRcjRPrAFK9NfyeQqHWT8oMJ0x+h+DyVBYFMvSGTeXde 794h/MX8A0PfAwZYiygR8d1ErwsB/3+CZGZLveUtz0Zxe67Zo08qGkYZwQ5dpuqk zicVsCBssrlks6JaPQ8x0tny/y1nRgL7J0VSpfKS9CqKmw9inSScrAlOVnQZft5h +uKDFGezcptMBCvU0yJzvZWF52js8w== =yh/0 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jun 8 12:53:28 2019 UTC gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align2_2.0.0-6.dsc dpkg-source: info: extracting lambda-align2 in /<> dpkg-source: info: unpacking lambda-align2_2.0.0.orig.tar.gz dpkg-source: info: unpacking lambda-align2_2.0.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_tests dpkg-source: info: applying 32bit dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-fa86c544-8820-42d6-bac0-b5229d226b1c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if ls tests/*~ 1> /dev/null 2>&1; then \ for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \ fi dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/lambda-align2.substvars debian/files rm -fr -- debian/lambda-align2/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch --builddirectory=build dh_update_autotools_config -a -O--builddirectory=build dh_autoreconf -a -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DLAMBDA_NATIVE_BUILD=OFF \ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=0" \ -DLAMBDA_COMPILE_THREADS=32 install -d build cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=0 -DLAMBDA_COMPILE_THREADS=32 .. Compiler Detection -- The CXX compiler identification is GNU 9.2.1 -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.2.11 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements where met. Build configuration -- LAMBDA version is: 2.0.0 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF LAMBDA_MMAPPED_DB OFF LAMBDA_NATIVE_BUILD OFF LAMBDA_MULTIOPT_BUILD 0 LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' dh_auto_build -a -O--builddirectory=build cd build && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles /<>/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/lambda2.dir/DependInfo.cmake --color= Scanning dependencies of target lambda2 make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/<>/build' [ 14%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o cd /<>/build/src && /usr/bin/aarch64-linux-gnu-g++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=32 -s -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /<>/src/lambda.cpp In file included from /<>/src/search.hpp:32, from /<>/src/lambda.cpp:22: /<>/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 219 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /<>/src/mkindex.hpp:36, from /<>/src/lambda.cpp:23: /<>/src/mkindex_misc.hpp: In function ‘void getCwd(TString&) [with TString = std::__cxx11::basic_string]’: /<>/src/mkindex_misc.hpp:33:11: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 33 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 28%] Linking CXX executable ../bin/lambda2 cd /<>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=32 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/<>/build' [ 28%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/manual.dir/DependInfo.cmake --color= Scanning dependencies of target manual make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/<>/build' [ 42%] Generating lambda2.1 cd /<>/build/src && lambda2 --export-help=man > lambda2.1 /bin/sh: 1: lambda2: not found make[3]: *** [src/CMakeFiles/manual.dir/build.make:68: src/lambda2.1] Error 127 make[3]: *** Deleting file 'src/lambda2.1' make[3]: Leaving directory '/<>/build' make[2]: *** [CMakeFiles/Makefile2:96: src/CMakeFiles/manual.dir/all] Error 2 make[2]: Leaving directory '/<>/build' make[1]: *** [Makefile:155: all] Error 2 make[1]: Leaving directory '/<>/build' dh_auto_build: cd build && make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:18: build-arch] Error 255 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-09-29T16:43:25Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 175416 Build-Time: 181 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 20 Job: lambda-align2_2.0.0-6 Machine Architecture: amd64 Package: lambda-align2 Package-Time: 213 Source-Version: 2.0.0-6 Space: 175416 Status: attempted Version: 2.0.0-6 -------------------------------------------------------------------------------- Finished at 2019-09-29T16:43:25Z Build needed 00:03:33, 175416k disk space