sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | lambda-align 1.0.3-6 (mips64el) Wed, 11 Mar 2020 06:50:42 +0000 | +==============================================================================+ Package: lambda-align Version: 1.0.3-6 Source Version: 1.0.3-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-9f28e649-3ca6-451e-af55-c31ffb9bc64a' with '<>' I: NOTICE: Log filtering will replace 'build/lambda-align-m1j8dt/resolver-9uunv9' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://debian.oregonstate.edu/debian unstable InRelease Get:2 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [7913 kB] Fetched 7913 kB in 2s (4754 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 333 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main lambda-align 1.0.3-6 (dsc) [1797 B] Get:2 http://debian.oregonstate.edu/debian unstable/main lambda-align 1.0.3-6 (tar) [323 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main lambda-align 1.0.3-6 (diff) [8076 B] Fetched 333 kB in 0s (9643 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/lambda-align-m1j8dt/lambda-align-1.0.3' with '<>' I: NOTICE: Log filtering will replace 'build/lambda-align-m1j8dt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [430 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1909 B in 0s (69.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cmake cmake-data cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-8-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2 libicu63 libio-string-perl libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:mips64el libstdc++-9-dev libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db openssl po-debconf procps sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation cmake-doc ninja-build gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el krb5-doc krb5-user libstdc++-8-doc:mips64el libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser ca-certificates libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el libidn2-0:mips64el ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdmainutils build-essential cmake cmake-data cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-8-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbsd0 libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2 libicu63 libio-string-perl libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libsigsegv2 libssh2-1 libssl1.1 libstdc++-8-dev:mips64el libstdc++-9-dev libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db openssl po-debconf procps sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 87.5 MB of archives. After this operation, 370 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10-20200304-1 [195 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2-1 [102 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-4 [62.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-4 [262 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.34-2cross5 [2313 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.15-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.29-10 [2638 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.2.1-31 [1698 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.2.1-31 [10.7 MB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-4 [709 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.0-2 [335 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-common all 2.4.49+dfsg-2 [92.0 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-2 [226 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1 [55.1 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.68.0-1 [321 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.34.2-1 [127 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.2.1-24cross1 [195 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6464 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.2.1-24cross1 [191 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.29-8cross1 [1324 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mips64el-cross all 1:9.2.1-24cross1 [69.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 9.2.1-24cross1 [76.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 9.2.1-24cross1 [7436 B] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.2.1-24cross1 [247 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [6811 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 9.2.1-24cross1 [398 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.4.8-1cross1 [1139 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.29-8cross1 [2456 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.2.1-24cross1 [1725 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.2.1-24cross1 [7046 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.67-2 [104 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.5-1 [1320 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.9 [994 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-8-base mips64el 8.4.0-1 [194 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10-20200304-1 [69.3 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.15-1 [95.5 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.29-10 [2538 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10-20200304-1 [7524 B] Get:109 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-2 [47.3 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.4.19-1 [1068 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.15-1 [118 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.29-10 [2455 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mips64el libbz2-dev mips64el 1.0.8-2 [33.2 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10-20200304-1 [89.5 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-8-dev mips64el 8.4.0-1 [235 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-12 [1220 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10-20200304-1 [434 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-8-dev mips64el 8.4.0-1 [1582 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1d-2 [840 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g mips64el 1:1.2.11.dfsg-2 [88.2 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mips64el zlib1g-dev mips64el 1:1.2.11.dfsg-2 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.5 MB in 1s (111 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12835 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.2.1-24cross1) ... Setting up linux-libc-dev:mips64el (5.4.19-1) ... Setting up libc6-mips64el-cross (2.29-8cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.2.1-24cross1) ... Setting up libldap-common (2.4.49+dfsg-2) ... Setting up libyaml-perl (1.30-1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.34-2cross5) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libseqan2-dev (2.4.0+dfsg-12) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mips64el (10-20200304-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libuv1:amd64 (1.34.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mips64el (8.4.0-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.29-10) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up linux-libc-dev-mips64el-cross (5.4.8-1cross1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (9.2.1-24cross1) ... Setting up openssl (1.1.1d-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-4) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-4) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libatomic1-mips64el-cross (9.2.1-24cross1) ... Setting up libgcc1-mips64el-cross (1:9.2.1-24cross1) ... Setting up libstdc++-9-dev:amd64 (9.2.1-31) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:amd64 (3.4.0-2) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up libc6-dev-mips64el-cross (2.29-8cross1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.2.1-31) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (9.2.1-24cross1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-4) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libgcc-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up build-essential (12.8) ... Setting up libcurl4:amd64 (7.68.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-9-dev-mips64el-cross (9.2.1-24cross1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.16.3-1) ... Setting up g++-9-mips64el-linux-gnuabi64 (9.2.1-24cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.15-1) ... Setting up libgcc-s1:mips64el (10-20200304-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.29-10) ... Setting up libcrypt-dev:mips64el (1:4.4.15-1) ... Setting up libc6-dev:mips64el (2.29-10) ... Setting up libbz2-1.0:mips64el (1.0.8-2) ... Setting up libstdc++6:mips64el (10-20200304-1) ... Setting up libbz2-dev:mips64el (1.0.8-2) ... Setting up debhelper (12.9) ... Setting up zlib1g:mips64el (1:1.2.11.dfsg-2) ... Setting up libgomp1:mips64el (10-20200304-1) ... Setting up libatomic1:mips64el (10-20200304-1) ... Setting up libgcc-8-dev:mips64el (8.4.0-1) ... Setting up zlib1g-dev:mips64el (1:1.2.11.dfsg-2) ... Setting up libstdc++-8-dev:mips64el (8.4.0-1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-4 dpkg-dev_1.19.7 g++-9_9.2.1-31 gcc-8_8.4.0-1 gcc-9_9.2.1-31 libc6-dev_2.29-10 libstdc++-8-dev_8.4.0-1 libstdc++-9-dev_9.2.1-31 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200304-1 libstdc++6-mips64el-cross_9.2.1-24cross1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-4 binutils-common_2.34-4 binutils-mips64el-linux-gnuabi64_2.34-2cross5 binutils-x86-64-linux-gnu_2.34-4 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.4.0-1 cpp-9_9.2.1-31 cpp-9-mips64el-linux-gnuabi64_9.2.1-24cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-31 g++-9-mips64el-linux-gnuabi64_9.2.1-24cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:9.2.1-3.1 gcc-10-base_10-20200304-1 gcc-8_8.4.0-1 gcc-8-base_8.4.0-1 gcc-9_9.2.1-31 gcc-9-base_9.2.1-31 gcc-9-cross-base-mipsen_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64_9.2.1-24cross1 gcc-9-mips64el-linux-gnuabi64-base_9.2.1-24cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-3 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libarchive13_3.4.0-2 libasan5_9.2.1-31 libatomic1_10-20200304-1 libatomic1-mips64el-cross_9.2.1-24cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-4 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-dev-mips64el-cross_2.29-8cross1 libc6-mips64el-cross_2.29-8cross1 libcap-ng0_0.7.9-2.1+b2 libcc1-0_10-20200304-1 libcom-err2_1.45.5-2 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000002-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-4 libctf0_2.34-4 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libffi7_3.3-3 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libgcc-8-dev_8.4.0-1 libgcc-9-dev_9.2.1-31 libgcc-9-dev-mips64el-cross_9.2.1-24cross1 libgcc-s1_10-20200304-1 libgcc1_1:10-20200304-1 libgcc1-mips64el-cross_1:9.2.1-24cross1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.5-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200304-1 libgomp1-mips64el-cross_9.2.1-24cross1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed4_3.5.1+really3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10-20200304-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblsan0_10-20200304-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.4.0-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-4 libpsl5_0.21.0-1 libquadmath0_10-20200304-1 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libseqan2-dev_2.4.0+dfsg-12 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.4.0-1 libstdc++-9-dev_9.2.1-31 libstdc++-9-dev-mips64el-cross_9.2.1-24cross1 libstdc++6_10-20200304-1 libstdc++6-mips64el-cross_9.2.1-24cross1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200304-1 libubsan1_10-20200304-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.34.2-1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-4 libyaml-perl_1.30-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 linux-libc-dev-mips64el-cross_5.4.8-1cross1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1d-2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.16-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align Binary: lambda-align Architecture: any Version: 1.0.3-6 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Michael R. Crusoe Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev, cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz f7950e95ae15131b6a3ef5c0aac6a65e30b681de 8076 lambda-align_1.0.3-6.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 273eb80db8d211a4962c9293da44c3c306f9285cac40bc16214792ac783c8aaf 8076 lambda-align_1.0.3-6.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz c3059711cc55cec3d40ede08e067c36a 8076 lambda-align_1.0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAl4+1N0ACgkQUfhKj+zK fgn38wf/eQZYcur2B80xsxni8nDV4Gllx537JzWZrKZjljPw5jJ43NPo0q6eukyc E1PSuSc7ZAsw9socn3OdAHODECCS2qaFxhUqTJHXnPsp2T8GnbW1Sxo6suhCA6+4 8xF//SRM3nETO+lSJbxHlWDlQ9Qm86D6nHsh7JvYkEfdA2bdnJBVxU/TcATSjVHs e+3zbRN2E0aJfLQ6nN2TNyoe2cbeZ7kY5sDi+uuG77ln2E1FtPNdqTY7T2Ydn8en m/LktqBcyeMs+UuWLYLdUt/gXFS21IpEm15JbRDcK6uoQCg1CctKyWVPuXuXYHwG EvH+mavYPgSZDciQ/wysdXzHa9aWjA== =pD29 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 8 15:33:49 2020 UTC gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align_1.0.3-6.dsc dpkg-source: info: extracting lambda-align in /<> dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-9f28e649-3ca6-451e-af55-c31ffb9bc64a SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build-arch dh build-arch --builddirectory=build dh_update_autotools_config -a -O--builddirectory=build dh_autoreconf -a -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mips64 -DCMAKE_C_COMPILER=mips64el-linux-gnuabi64-gcc -DCMAKE_CXX_COMPILER=mips64el-linux-gnuabi64-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-qmake -DCMAKE_INSTALL_LIBDIR=lib/mips64el-linux-gnuabi64 -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. Compiler Detection -- The CXX compiler identification is GNU 9.2.1 -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.2.11 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.4.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' dh_auto_build -a -O--builddirectory=build cd build && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles /<>/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= Scanning dependencies of target lambda_indexer make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/<>/build' [ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /<>/build/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=32 -O3 -DNDEBUG -s -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /<>/src/lambda_indexer.cpp In file included from /<>/src/misc.hpp:34, from /<>/src/lambda_indexer.hpp:35, from /<>/src/lambda_indexer.cpp:31: /<>/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ /<>/src/options.hpp: In function ‘void getCwd(TString&) [with TString = std::__cxx11::basic_string]’: /<>/src/options.hpp:173:11: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 50%] Linking CXX executable ../bin/lambda_indexer cd /<>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=32 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/<>/build' [ 50%] Built target lambda_indexer make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= Scanning dependencies of target lambda make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/<>/build' [ 75%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /<>/build/src && /usr/bin/mips64el-linux-gnuabi64-g++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=32 -O3 -DNDEBUG -s -o CMakeFiles/lambda.dir/lambda.cpp.o -c /<>/src/lambda.cpp In file included from /<>/src/lambda.cpp:32: /<>/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTN]’ /<>/src/lambda.cpp:168:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score >; seqan::BlastProgram p = seqan::BlastProgram::BLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:145:106: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::NO_COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ /<>/src/lambda.cpp:147:107: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::NO_COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTP, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTP]’ /<>/src/lambda.cpp:175:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTP; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::BLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::BLASTX]’ /<>/src/lambda.cpp:180:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::BLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTN, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN]’ /<>/src/lambda.cpp:186:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTN; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:219:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::IndexSa<>, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::IndexSa<>; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:316:35: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp: In instantiation of ‘int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >; typename TLocalHolder::TMatch = Match > > >]’: /<>/src/lambda.hpp:1513:45: required from ‘int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan::FMIndex, seqan::Tag, seqan::BlastProgram::TBLASTX, seqan::BlastTabularSpec::COMMENTS>, seqan::Tag >]’ /<>/src/lambda.cpp:462:33: required from ‘int realMain(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan::FMIndex; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; TOutFormat = seqan::Tag; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:323:36: required from ‘int argConv4(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; TScoreExtension = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:266:24: required from ‘int argConv3(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan::Tag; TRedAlph = seqan::SimpleType > >; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:221:28: required from ‘int argConv2(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&, const seqan::BlastProgramSelector

&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX]’ /<>/src/lambda.cpp:191:28: required from ‘int argConv1(const LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector&) [with TOutFormat = seqan::Tag; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ /<>/src/lambda.cpp:149:104: required from here /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:34: /<>/src/lambda.hpp:1282:22: warning: ‘double seqan::computeEValue(TBlastMatch&, seqan::BlastIOContext&) [with TBlastMatch = seqan::BlastMatch, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >, seqan::Gaps, seqan::MMap<> >, seqan::InfixSegment>, seqan::Tag >, unsigned int, seqan::Segment >, seqan::InfixSegment>, seqan::Segment >, seqan::InfixSegment>, std::vector >, seqan::String > >; TScore = seqan::Score, seqan::ScoreSpecSelectable> >; seqan::BlastProgram p = seqan::BlastProgram::TBLASTX; seqan::BlastTabularSpec h = seqan::BlastTabularSpec::COMMENTS]’ is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /<>/src/output.hpp:25, from /<>/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ In file included from /<>/src/lambda.cpp:32: /<>/src/options.hpp: In function ‘void getCwd(TString&) [with TString = std::__cxx11::basic_string]’: /<>/src/options.hpp:173:11: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [100%] Linking CXX executable ../bin/lambda cd /<>/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=32 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/<>/build' [100%] Built target lambda make[2]: Leaving directory '/<>/build' /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles 0 make[1]: Leaving directory '/<>/build' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --builddirectory=build dh_testroot -a -O--builddirectory=build dh_prep -a -O--builddirectory=build dh_auto_install -a -O--builddirectory=build cd build && make -j1 install DESTDIR=/<>/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles /<>/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/<>/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/<>/build' [ 50%] Built target lambda_indexer make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/build /<>/build/src /<>/build/src/CMakeFiles/lambda.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/<>/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/<>/build' [100%] Built target lambda make[2]: Leaving directory '/<>/build' /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/lambda-align/usr/bin/lambda -- Installing: /<>/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /<>/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /<>/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /<>/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /<>/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/<>/build' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--builddirectory=build dh_installchangelogs -a -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/<>' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 /bin/sh: 1: ./build/bin/lambda: Exec format error ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 /bin/sh: 1: ./build/bin/lambda_indexer: Exec format error dh_installman -- make[1]: Leaving directory '/<>' dh_installinit -a -O--builddirectory=build dh_installsystemduser -a -O--builddirectory=build dh_perl -a -O--builddirectory=build dh_link -a -O--builddirectory=build dh_strip_nondeterminism -a -O--builddirectory=build dh_compress -a -O--builddirectory=build dh_fixperms -a -O--builddirectory=build dh_missing -a -O--builddirectory=build dh_dwz -a -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dh_installdeb -a -O--builddirectory=build dh_gencontrol -a -O--builddirectory=build dh_md5sums -a -O--builddirectory=build dh_builddeb -a -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-6_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../lambda-align_1.0.3-6_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-03-11T06:55:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ lambda-align_1.0.3-6_mips64el.changes: -------------------------------------- Format: 1.8 Date: Sat, 08 Feb 2020 16:22:53 +0100 Source: lambda-align Binary: lambda-align Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: lambda-align - Local Aligner for Massive Biological DatA Changes: lambda-align (1.0.3-6) unstable; urgency=medium . * Reset CMAKE_BUILD_TYPE to "Release" for reproducibility. Checksums-Sha1: 6017176cf481303eee2494c7bd4f6113433f2a8a 5642 lambda-align_1.0.3-6_mips64el.buildinfo 4c59aeba8a9bacd0872daafdaf290be7985ecb0d 1000592 lambda-align_1.0.3-6_mips64el.deb Checksums-Sha256: 27624402e4ea76f943f399ac943c4cbf8fc0d8ca90883e89092af535b4176428 5642 lambda-align_1.0.3-6_mips64el.buildinfo 51855cc99ca78a8bf8b18dfaeee5c8cf93181af16c0185ddcd851a1964527815 1000592 lambda-align_1.0.3-6_mips64el.deb Files: 1396dfbec81960ffb6d35e9edd0217e2 5642 science optional lambda-align_1.0.3-6_mips64el.buildinfo ed847d3fb1c68da205a52765c301d2ae 1000592 science optional lambda-align_1.0.3-6_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: lambda-align Binary: lambda-align Architecture: mips64el Version: 1.0.3-6 Checksums-Md5: ed847d3fb1c68da205a52765c301d2ae 1000592 lambda-align_1.0.3-6_mips64el.deb Checksums-Sha1: 4c59aeba8a9bacd0872daafdaf290be7985ecb0d 1000592 lambda-align_1.0.3-6_mips64el.deb Checksums-Sha256: 51855cc99ca78a8bf8b18dfaeee5c8cf93181af16c0185ddcd851a1964527815 1000592 lambda-align_1.0.3-6_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 11 Mar 2020 06:55:00 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-6), binutils (= 2.34-4), binutils-common (= 2.34-4), binutils-x86-64-linux-gnu (= 2.34-4), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), cmake (= 3.16.3-1), cmake-data (= 3.16.3-1), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.4.0-1), cpp-9 (= 9.2.1-31), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.9), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.3-2), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-5), fdisk (= 2.34-0.1), file (= 1:5.38-4), findutils (= 4.7.0-1), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-31), gcc (= 4:9.2.1-3.1), gcc-10-base (= 10-20200304-1), gcc-8 (= 8.4.0-1), gcc-8-base (= 8.4.0-1), gcc-9 (= 9.2.1-31), gcc-9-base (= 9.2.1-31), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-4), gzip (= 1.10-1), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libarchive-zip-perl (= 1.67-2), libarchive13 (= 3.4.0-2), libasan5 (= 9.2.1-31), libatomic1 (= 10-20200304-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2+b1), libbinutils (= 2.34-4), libblkid1 (= 2.34-0.1), libbrotli1 (= 1.0.7-6), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libbz2-dev (= 1.0.8-2), libc-bin (= 2.29-10), libc-dev-bin (= 2.29-10), libc6 (= 2.29-10), libc6-dev (= 2.29-10), libcap-ng0 (= 0.7.9-2.1+b2), libcc1-0 (= 10-20200304-1), libcom-err2 (= 1.45.5-2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1), libcrypt1 (= 1:4.4.15-1), libctf-nobfd0 (= 2.34-4), libctf0 (= 2.34-4), libcurl4 (= 7.68.0-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.251), libdebhelper-perl (= 12.9), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.9-1), libfdisk1 (= 2.34-0.1), libffi7 (= 3.3-3), libfile-stripnondeterminism-perl (= 1.6.3-2), libgcc-8-dev (= 8.4.0-1), libgcc-9-dev (= 9.2.1-31), libgcc-s1 (= 10-20200304-1), libgcc1 (= 1:10-20200304-1), libgcrypt20 (= 1.8.5-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.5-1), libgmp10 (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.12-2), libgomp1 (= 10-20200304-1), libgpg-error0 (= 1.37-1), libgssapi-krb5-2 (= 1.17-6), libhogweed5 (= 3.5.1+really3.5.1-2), libicu63 (= 63.2-2), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libitm1 (= 10-20200304-1), libjsoncpp1 (= 1.7.4-3.1), libk5crypto3 (= 1.17-6), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.17-6), libkrb5support0 (= 1.17-6), libldap-2.4-2 (= 2.4.49+dfsg-2), libldap-common (= 2.4.49+dfsg-2), liblsan0 (= 10-20200304-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.4.0-1), libncurses6 (= 6.2-1), libncursesw6 (= 6.2-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1), libp11-kit0 (= 0.23.20-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-9), libpipeline1 (= 1.5.2-2), libprocps8 (= 2:3.3.16-4), libpsl5 (= 0.21.0-1), libquadmath0 (= 10-20200304-1), librhash0 (= 1.3.9-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libseccomp2 (= 2.4.2-2), libselinux1 (= 3.0-1+b1), libseqan2-dev (= 2.4.0+dfsg-12), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libssh2-1 (= 1.8.0-2.1), libssl1.1 (= 1.1.1d-2), libstdc++-9-dev (= 9.2.1-31), libstdc++6 (= 10-20200304-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 244.3-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10-20200304-1), libubsan1 (= 10-20200304-1), libuchardet0 (= 0.0.6-3), libudev1 (= 244.3-1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libuv1 (= 1.34.2-1), libxml2 (= 2.9.10+dfsg-4), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.19-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.2.1-1.2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), openssl (= 1.1.1d-2), patch (= 2.7.6-6), perl (= 5.30.0-9), perl-base (= 5.30.0-9), perl-modules-5.30 (= 5.30.0-9), po-debconf (= 1.0.21), procps (= 2:3.3.16-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-2.1), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1581175373" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ lambda-align_1.0.3-6_mips64el.deb --------------------------------- new Debian package, version 2.0. size 1000592 bytes: control archive=1008 bytes. 794 bytes, 16 lines control 540 bytes, 8 lines md5sums Package: lambda-align Version: 1.0.3-6 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 5530 Depends: libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Suggests: cwl-runner Section: science Priority: optional Homepage: https://seqan.github.io/lambda Description: Local Aligner for Massive Biological DatA Lambda is a local biosequence aligner optimized for many query sequences and searches in protein space. It is compatible to the de facto standard tool BLAST, but often outperforms the best currently available alternatives at reproducing BLAST’s results and is the fastest compared with the current state of the art at comparable levels of sensitivity. drwxr-xr-x root/root 0 2020-02-08 15:22 ./ drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/ drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/bin/ -rwxr-xr-x root/root 3848032 2020-02-08 15:22 ./usr/bin/lambda -rwxr-xr-x root/root 1792016 2020-02-08 15:22 ./usr/bin/lambda_indexer drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/ drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/lambda-align/ -rw-r--r-- root/root 375 2020-01-09 07:07 ./usr/share/doc/lambda-align/README.Debian -rw-r--r-- root/root 1380 2020-02-08 15:22 ./usr/share/doc/lambda-align/changelog.Debian.gz -rw-r--r-- root/root 2887 2020-01-09 07:07 ./usr/share/doc/lambda-align/copyright drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/doc/lambda/ -rw-r--r-- root/root 2236 2018-02-16 18:56 ./usr/share/doc/lambda/README.rst.gz drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-08 15:22 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2020-02-08 15:22 ./usr/share/man/man1/lambda.1.gz -rw-r--r-- root/root 20 2020-02-08 15:22 ./usr/share/man/man1/lambda_indexer.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [562 B] Get:5 copy:/<>/apt_archive ./ Packages [650 B] Fetched 2175 B in 0s (81.8 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libjson-xs-perl libfreezethaw-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl libdevel-size-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl libjson-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 7897 kB of archives. After this operation, 22.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 6.1 [19.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.19-3 [529 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-4 [661 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.19-3 [889 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b3 [71.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB] Get:20 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amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b1 [26.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 4 [7148 B] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.067-1 [212 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3200-1 [39.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.22-1 [369 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.26-1 [27.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.43-1 [83.2 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-perl all 4.02000-2 [88.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.008001-2 [331 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [35.4 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.55.0 [1312 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7897 kB in 0s (34.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 25068 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.1_all.deb ... Unpacking netbase (6.1) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.19-3_amd64.deb ... Unpacking gpgconf (2.2.19-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up libapt-pkg-perl (0.1.36+b3) ... Setting up libberkeleydb-perl:amd64 (0.62-1+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.10-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.12-1) ... Setting up libclone-perl (0.43-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b2) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b1) ... Setting up libsqlite3-0:amd64 (3.31.1-4) ... Setting up libfuture-perl (0.43-1) ... Setting up libyaml-libyaml-perl (0.81+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (4) ... Setting up libmldbm-perl (2.05-2) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libnumber-compare-perl (0.03-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 220296 Build-Time: 229 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 19 Job: lambda-align_1.0.3-6 Lintian: pass Machine Architecture: amd64 Package: lambda-align Package-Time: 258 Source-Version: 1.0.3-6 Space: 220296 Status: successful Version: 1.0.3-6 -------------------------------------------------------------------------------- Finished at 2020-03-11T06:55:00Z Build needed 00:04:18, 220296k disk space