sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | libbio-samtools-perl 1.43-5 (amd64) Wed, 27 Mar 2024 16:01:08 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-5 Source Version: 1.43-5 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.eJjbrI_EJe... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-ZX8eWm/resolver-Oi5o3z' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.6 MB] Get:3 http://mirror.einval.org/debian unstable/main amd64 Packages [9942 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9823 kB] Fetched 30.6 MB in 8s (3991 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: cpp-13 cpp-13-aarch64-linux-gnu g++-13 g++-13-aarch64-linux-gnu gcc-13 gcc-13-aarch64-linux-gnu gcc-13-base libdebconfclient0 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libstdc++-13-dev 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 40.6 MB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libdebconfclient0 arm64 0.271+b3 [10.3 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 g++-13 arm64 13.2.0-21 [14.7 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-21 [9742 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 gcc-13 arm64 13.2.0-21 [471 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-21 [16.9 MB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev arm64 13.2.0-21 [2190 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev arm64 13.2.0-21 [2238 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-21 [8868 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 cpp-13 arm64 13.2.0-21 [1280 B] Get:10 http://mirror.einval.org/debian unstable/main arm64 gcc-13-base arm64 13.2.0-21 [44.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libgdbm6t64 arm64 1.23-5.1+b1 [71.9 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 libgdbm-compat4t64 arm64 1.23-5.1+b1 [48.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.6 MB in 0s (87.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11887 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b3_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.271+b3) over (0.271+b2) ... Setting up libdebconfclient0:arm64 (0.271+b3) ... (Reading database ... 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Unpacking libgdbm-compat4t64:arm64 (1.23-5.1+b1) over (1.23-5.1) ... Setting up libgdbm6t64:arm64 (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:arm64 (1.23-5.1+b1) ... Setting up gcc-13-base:arm64 (13.2.0-21) ... Setting up libgcc-13-dev:arm64 (13.2.0-21) ... Setting up libstdc++-13-dev:arm64 (13.2.0-21) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-21) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-21) ... Setting up gcc-13 (13.2.0-21) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-21) ... Setting up g++-13 (13.2.0-21) ... Setting up cpp-13 (13.2.0-21) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libbio-samtools-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Please use: git clone https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 352 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main libbio-samtools-perl 1.43-5 (dsc) [2228 B] Get:2 http://mirror.einval.org/debian unstable/main libbio-samtools-perl 1.43-5 (tar) [341 kB] Get:3 http://mirror.einval.org/debian unstable/main libbio-samtools-perl 1.43-5 (diff) [9360 B] Fetched 352 kB in 0s (1375 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-ZX8eWm/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-ZX8eWm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libbam-dev, libmodule-build-perl, perl-xs-dev, perl:arm64, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libbam-dev, libmodule-build-perl, perl-xs-dev, perl:arm64, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [815 B] Get:5 copy:/<>/apt_archive ./ Packages [828 B] Fetched 2252 B in 0s (120 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbam-dev:amd64 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdb5.3t64:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgdbm-compat4t64:amd64 libgdbm6t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libmodule-build-perl libperl-dev:amd64 libperl5.38t64:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 gdbm-l10n:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbam-dev:amd64 libbz2-1.0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdb5.3t64:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgdbm-compat4t64:amd64 libgdbm6t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libmodule-build-perl libperl-dev:amd64 libperl5.38t64:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 444 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-6+b2 [15.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.3-10 [90.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1+b2 [36.7 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-3+b1 [1386 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [9273 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-7 [4732 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.42-4 [2376 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14-20240127-1cross1 [71.7 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14-20240127-1cross1 [128 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14-20240127-1cross1 [25.2 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14-20240127-1cross1 [8996 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14-20240127-1cross1 [2716 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14-20240127-1cross1 [1199 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14-20240127-1cross1 [2444 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-12cross1 [1478 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14-20240127-1cross1 [667 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14-20240127-1cross1 [1070 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14-20240127-1cross1 [1434 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14-20240127-1cross1 [146 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-12cross1 [2536 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:40 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-7 [1452 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-12cross1 [1898 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-12cross1 [2210 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:44 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-7 [1204 B] Get:45 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.15.2 [87.7 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1 [188 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.15.2 [900 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.34-1 [28.4 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.34-1 [73.5 kB] Get:76 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-21 [44.3 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14-20240315-1 [42.9 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14-20240315-1 [72.2 kB] Get:79 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:80 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14-20240315-1 [2724 kB] Get:81 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14-20240315-1 [9224 B] Get:82 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:83 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:84 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:85 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:86 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get:87 http://mirror.einval.org/debian unstable/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get:88 http://mirror.einval.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:89 http://mirror.einval.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6 [697 kB] Get:90 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14-20240315-1 [136 kB] Get:91 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14-20240315-1 [25.8 kB] Get:92 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14-20240315-1 [1201 kB] Get:93 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14-20240315-1 [2454 kB] Get:94 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14-20240315-1 [713 kB] Get:95 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14-20240315-1 [1071 kB] Get:96 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14-20240315-1 [1485 kB] Get:97 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14-20240315-1 [147 kB] Get:98 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-21 [2537 kB] Get:99 http://mirror.einval.org/debian unstable/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:100 http://mirror.einval.org/debian unstable/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libmodule-build-perl all 0.423400-2 [252 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 libperl5.38t64 amd64 5.38.2-3.2 [4266 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libperl-dev amd64 5.38.2-3.2 [1088 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-21 [2264 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 1s (85.7 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11889 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libperl5.38t64:amd64. Preparing to unpack .../100-libperl5.38t64_5.38.2-3.2_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-3.2) ... Selecting previously unselected package libperl-dev:amd64. Preparing to unpack .../101-libperl-dev_5.38.2-3.2_amd64.deb ... Unpacking libperl-dev:amd64 (5.38.2-3.2) ... Selecting previously unselected package libstdc++-13-dev:amd64. Preparing to unpack .../102-libstdc++-13-dev_13.2.0-21_amd64.deb ... Unpacking libstdc++-13-dev:amd64 (13.2.0-21) ... Selecting previously unselected package sbuild-build-depends-main-dummy:amd64. Preparing to unpack .../103-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:arm64 (1.5.7-1+b2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-10) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up gcc-14-base:amd64 (14-20240315-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.2) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14-20240127-1cross1) ... Setting up file (1:5.45-3) ... Setting up libyaml-perl (1.31-1) ... Setting up libgomp1-amd64-cross (14-20240127-1cross1) ... Setting up libfakeroot:arm64 (1.34-1) ... Setting up libelf1t64:arm64 (0.191-1) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libitm1-amd64-cross (14-20240127-1cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:amd64 (13.2.0-21) ... Setting up libatomic1-amd64-cross (14-20240127-1cross1) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up libquadmath0-amd64-cross (14-20240127-1cross1) ... Setting up autopoint (0.21-14) ... Setting up libc6-amd64-cross (2.37-12cross1) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-x86-64-linux-gnu-base:arm64 (13.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libgcc-s1-amd64-cross (14-20240127-1cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b2) ... Setting up binutils-x86-64-linux-gnu (2.42-4) ... Setting up libstdc++6-amd64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up libasan8-amd64-cross (14-20240127-1cross1) ... Setting up liblsan0-amd64-cross (14-20240127-1cross1) ... Setting up libc6-dev-amd64-cross (2.37-12cross1) ... Setting up libtsan2-amd64-cross (14-20240127-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libhwasan0-amd64-cross (14-20240127-1cross1) ... Setting up libubsan1-amd64-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up debhelper (13.15.2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (14-20240315-1) ... Setting up libc6:amd64 (2.37-15.1) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-6) ... Setting up libhwasan0:amd64 (14-20240315-1) ... Setting up libasan8:amd64 (14-20240315-1) ... Setting up libtsan2:amd64 (14-20240315-1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... Setting up libstdc++6:amd64 (14-20240315-1) ... Setting up liblsan0:amd64 (14-20240315-1) ... Setting up libitm1:amd64 (14-20240315-1) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3.1) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... Setting up libgomp1:amd64 (14-20240315-1) ... Setting up libquadmath0:amd64 (14-20240315-1) ... Setting up libatomic1:amd64 (14-20240315-1) ... Setting up libubsan1:amd64 (14-20240315-1) ... Setting up libgcc-13-dev:amd64 (13.2.0-21) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libc6-dev:amd64 (2.37-15.1) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2) ... Setting up libstdc++-13-dev:amd64 (13.2.0-21) ... Setting up libperl-dev:amd64 (5.38.2-3.2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up libbam-dev:amd64 (0.1.19+dfsg-6) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-21 gcc-13_13.2.0-21 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-21 libstdc++-13-dev-amd64-cross_13.2.0-12cross1 libstdc++6_14-20240315-1 libstdc++6-amd64-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-aarch64-linux-gnu_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-10 bsdutils_1:2.39.3-10 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-21 cpp-13-aarch64-linux-gnu_13.2.0-21 cpp-13-x86-64-linux-gnu_13.2.0-12cross1 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-amd64_12.10 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.2 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-21 g++-13-aarch64-linux-gnu_13.2.0-21 g++-13-x86-64-linux-gnu_13.2.0-12cross1 g++-aarch64-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-21 gcc-13-aarch64-linux-gnu_13.2.0-21 gcc-13-base_13.2.0-21 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-12cross1 gcc-13-x86-64-linux-gnu-base_13.2.0-12cross1 gcc-14-base_14-20240315-1 gcc-14-cross-base_14-20240127-1cross1 gcc-aarch64-linux-gnu_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240315-1 libasan8-amd64-cross_14-20240127-1cross1 libatomic1_14-20240315-1 libatomic1-amd64-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbam-dev_0.1.19+dfsg-6 libbinutils_2.42-4 libblkid1_2.39.3-10 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-15.1 libc-dev-bin_2.37-15.1 libc6_2.37-15.1 libc6-amd64-cross_2.37-12cross1 libc6-dev_2.37-15.1 libc6-dev-amd64-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240315-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-6 libdebconfclient0_0.271+b3 libdebhelper-perl_13.15.2 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.6 libelf1t64_0.191-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-13-dev_13.2.0-21 libgcc-13-dev-amd64-cross_13.2.0-12cross1 libgcc-s1_14-20240315-1 libgcc-s1-amd64-cross_14-20240127-1cross1 libgcrypt20_1.10.3-2 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.3-1.1+b1 libgomp1_14-20240315-1 libgomp1-amd64-cross_14-20240127-1cross1 libgpg-error0_1.47-3 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14-20240315-1 libhwasan0-amd64-cross_14-20240127-1cross1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14-20240315-1 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xz-utils_5.6.0-0.2 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-5 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl , libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 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debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying 0001-Lift-prototypes-of-bam_view1-and-bam_sort_core-from-.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure PERL5LIB=/usr/lib/x86_64-linux-gnu/perl/cross-config-5.38.2 /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Found /usr/include/samtools/bam.h and //lib/libbam.a. Checking prerequisites... requires: ! Bio::Root::Version is not installed ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a PERL5LIB=/usr/lib/x86_64-linux-gnu/perl/cross-config-5.38.2 /usr/bin/perl Build Building Bio-SamTools x86_64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -fcf-protection -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -fcf-protection -Wdate-time '-D_FORTIFY_SOURCE=2' -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c x86_64-linux-gnu-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE '-DVERSION="1.43"' '-DXS_VERSION="1.43"' -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -fcf-protection -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -fcf-protection -Wdate-time '-D_FORTIFY_SOURCE=2' -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') x86_64-linux-gnu-gcc -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: error adding symbols: file in wrong format collect2: error: ld returned 1 exit status make[1]: *** [makefile:17: bam2bedgraph] Error 1 make[1]: Leaving directory '/<>/c_bin' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbio-samtools-perl/ -a PERL5LIB=/usr/lib/x86_64-linux-gnu/perl/cross-config-5.38.2 /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: Relocations in generic ELF (EM: 62) /usr/bin/ld: bam2bedgraph.o: error adding symbols: file in wrong format collect2: error: ld returned 1 exit status make[1]: *** [makefile:17: bam2bedgraph] Error 1 make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libbio-samtools-perl: substitution variable ${misc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libbio-samtools-perl: substitution variable ${perl:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libbio-samtools-perl: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-5_amd64.deb'. dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.43-5_amd64.deb'. dpkg-genbuildinfo --build=any -O../libbio-samtools-perl_1.43-5_amd64.buildinfo dpkg-genchanges --build=any -O../libbio-samtools-perl_1.43-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-27T16:03:05Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-5_amd64.changes: ------------------------------------------ Format: 1.8 Date: Tue, 12 Mar 2024 22:11:21 +0100 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 1.43-5 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Closes: 1065759 Changes: libbio-samtools-perl (1.43-5) unstable; urgency=medium . * Team upload. . [ Niko Tyni ] * Add missing prototypes Closes: #1065759 . [ Andreas Tille ] * Remove trailing whitespace in debian/changelog (routine-update) Checksums-Sha1: fccab2f73909a85e2d0cf5027590b5048ae68de0 106952 libbio-samtools-perl-dbgsym_1.43-5_amd64.deb 0d206d703bc9692b3ae407609a03aa5aac94ea6e 5473 libbio-samtools-perl_1.43-5_amd64.buildinfo d12dafecaba6e99aea95a85b44ebcfb1c65d24a6 170516 libbio-samtools-perl_1.43-5_amd64.deb Checksums-Sha256: cae45d72aa1d74460c6528450f74f56958f97c84b0c994007e6cefe2cea950ed 106952 libbio-samtools-perl-dbgsym_1.43-5_amd64.deb 23fd1a6d19eb7956de171ddb1d3ebca1b0ef694b6c48bc08248681a58e1bee01 5473 libbio-samtools-perl_1.43-5_amd64.buildinfo 97a60c1e1abc2996bc752809f8980171591f0178d9a6ca0450cb98a70b65893c 170516 libbio-samtools-perl_1.43-5_amd64.deb Files: 54c71d712a5d144c185065ab8a1cd15a 106952 debug optional libbio-samtools-perl-dbgsym_1.43-5_amd64.deb 006367f5f5791fa7b40b6250613731c1 5473 perl optional libbio-samtools-perl_1.43-5_amd64.buildinfo 477dcc3a3f46d33f4c4518617687b609 170516 perl optional libbio-samtools-perl_1.43-5_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: amd64 Version: 1.43-5 Checksums-Md5: 54c71d712a5d144c185065ab8a1cd15a 106952 libbio-samtools-perl-dbgsym_1.43-5_amd64.deb 477dcc3a3f46d33f4c4518617687b609 170516 libbio-samtools-perl_1.43-5_amd64.deb Checksums-Sha1: fccab2f73909a85e2d0cf5027590b5048ae68de0 106952 libbio-samtools-perl-dbgsym_1.43-5_amd64.deb d12dafecaba6e99aea95a85b44ebcfb1c65d24a6 170516 libbio-samtools-perl_1.43-5_amd64.deb Checksums-Sha256: cae45d72aa1d74460c6528450f74f56958f97c84b0c994007e6cefe2cea950ed 106952 libbio-samtools-perl-dbgsym_1.43-5_amd64.deb 97a60c1e1abc2996bc752809f8980171591f0178d9a6ca0450cb98a70b65893c 170516 libbio-samtools-perl_1.43-5_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 27 Mar 2024 16:03:04 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-aarch64-linux-gnu (= 2.42-4), binutils-common (= 2.42-4), bsdextrautils (= 2.39.3-10), bsdutils (= 1:2.39.3-10), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-21), cpp-13-aarch64-linux-gnu (= 13.2.0-21), cpp-aarch64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.2), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-21), g++-13-aarch64-linux-gnu (= 13.2.0-21), g++-aarch64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-21), gcc-13-aarch64-linux-gnu (= 13.2.0-21), gcc-13-base (= 13.2.0-21), gcc-14-base (= 14-20240315-1), gcc-aarch64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240315-1), libatomic1 (= 14-20240315-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbam-dev (= 0.1.19+dfsg-6), libbinutils (= 2.42-4), libblkid1 (= 2.39.3-10), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240315-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.2), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-21), libgcc-s1 (= 14-20240315-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14-20240315-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libhwasan0 (= 14-20240315-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240315-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14-20240315-1), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmodule-build-perl (= 0.423400-2), libmount1 (= 2.39.3-10), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0g (= 1.5.3-6), libpcre2-8-0 (= 10.42-4+b1), libperl-dev (= 5.38.2-3.2), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1+b2), libquadmath0 (= 14-20240315-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsframe1 (= 2.42-4), libsmartcols1 (= 2.39.3-10), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-21), libstdc++6 (= 14-20240315-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1), libubsan1 (= 14-20240315-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.39.3-10), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3+b1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-10), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1710277881" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl-dbgsym_1.43-5_amd64.deb -------------------------------------------- new Debian package, version 2.0. size 106952 bytes: control archive=540 bytes. 412 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libbio-samtools-perl-dbgsym Source: libbio-samtools-perl Version: 1.43-5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Perl Group Installed-Size: 132 Depends: libbio-samtools-perl (= 1.43-5) Section: debug Priority: optional Description: debug symbols for libbio-samtools-perl Build-Ids: 1ae212f8621c9ba33c2611e62dceec33270e49fa drwxr-xr-x root/root 0 2024-03-12 21:11 ./ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/.build-id/1a/ -rw-r--r-- root/root 124288 2024-03-12 21:11 ./usr/lib/debug/.build-id/1a/e212f8621c9ba33c2611e62dceec33270e49fa.debug drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl-dbgsym -> libbio-samtools-perl libbio-samtools-perl_1.43-5_amd64.deb ------------------------------------- new Debian package, version 2.0. size 170516 bytes: control archive=1704 bytes. 987 bytes, 19 lines control 2478 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-5 Architecture: amd64 Maintainer: Debian Perl Group Installed-Size: 458 Depends: perl (>= 5.38.2-3.2), perlapi-5.38.2, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2024-03-12 21:11 ./ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/bin/ -rwxr-xr-x root/root 2087 2024-03-12 21:11 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2024-03-12 21:11 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2024-03-12 21:11 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Bam/Target.pm -rw-r--r-- root/root 77823 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam.pm drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/ -rw-r--r-- root/root 2296 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/Constants.pm -rw-r--r-- root/root 12026 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/SamToGBrowse.pm -rw-r--r-- root/root 2284 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/Bio/DB/Sam/Segment.pm drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/ -rw-r--r-- root/root 0 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.bs -rw-r--r-- root/root 240880 2024-03-12 21:11 ./usr/lib/x86_64-linux-gnu/perl5/5.38/auto/Bio/DB/Sam/Sam.so drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/ -rw-r--r-- root/root 1018 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/changelog.Debian.gz -rw-r--r-- root/root 3563 2016-02-12 19:31 ./usr/share/doc/libbio-samtools-perl/changelog.gz -rw-r--r-- root/root 11606 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/copyright drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 132 2024-03-12 21:11 ./usr/share/lintian/overrides/libbio-samtools-perl drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/man/man3/ -rw-r--r-- root/root 1608 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm.gz -rw-r--r-- root/root 6584 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Alignment.3pm.gz -rw-r--r-- root/root 1986 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz -rw-r--r-- root/root 1328 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz -rw-r--r-- root/root 1991 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz -rw-r--r-- root/root 1011 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz -rw-r--r-- root/root 19665 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Sam.3pm.gz -rw-r--r-- root/root 1476 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1397 B] Get:5 copy:/<>/apt_archive ./ Packages [1446 B] Fetched 3458 B in 0s (191 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After this operation, 53.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.1.5-1.1 [1208 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1 [47.3 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-3 [558 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.45.2-1 [835 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-3 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2+b2 [15.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1 [43.5 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b3 [120 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.27-1 [98.4 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.82-1 [96.9 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.64-1 [217 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b3 [35.2 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.37-1+b2 [127 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b3 [24.1 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.14-1 [37.7 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2+b1 [49.2 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.39-1+b2 [56.3 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-1 [58.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.3 MB in 0s (53.4 MB/s) Selecting previously unselected package netbase. (Reading database ... 17785 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_arm64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.6-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../006-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_arm64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.45.2-1) ... 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Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b2_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.008-2+b2) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.64-1_arm64.deb ... Unpacking libvariable-magic-perl (0.64-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b3_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.64-2+b3) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-2_all.deb ... 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Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../036-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../037-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../038-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../039-libcpanel-json-xs-perl_4.37-1+b2_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../040-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... 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Preparing to unpack .../123-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package lintian. Preparing to unpack .../124-lintian_2.117.0_all.deb ... Unpacking lintian (2.117.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../125-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:arm64 (1.14-1) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b2) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.5-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-4) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.27-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-3+b1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 3156 Build-Time: 23 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 50 Job: libbio-samtools-perl_1.43-5 Lintian: pass Machine Architecture: arm64 Package: libbio-samtools-perl Package-Time: 117 Source-Version: 1.43-5 Space: 3156 Status: successful Version: 1.43-5 -------------------------------------------------------------------------------- Finished at 2024-03-27T16:03:05Z Build needed 00:01:57, 3156k disk space