sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | libbio-samtools-perl 1.43-5 (armhf) Wed, 10 Apr 2024 17:07:34 +0000 | +==============================================================================+ Package: libbio-samtools-perl Version: 1.43-5 Source Version: 1.43-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-122cbb84-188a-4b3b-8a4e-210ef76925be' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-YHfZ5r/resolver-fNRQ6M' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-10-1414.26-F-2024-04-10-0205.10.pdiff [20.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-10-1414.26-F-2024-04-10-0205.10.pdiff [34.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-10-1414.26-F-2024-04-10-0205.10.pdiff [20.4 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9463 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-10-1414.26-F-2024-04-10-0205.10.pdiff [34.8 kB] Fetched 9843 kB in 3s (3564 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5308 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libc6-dev amd64 2.37-16 [1904 kB] Get:2 http://localhost:3142/debian sid/main amd64 libc-dev-bin amd64 2.37-16 [47.5 kB] Get:3 http://localhost:3142/debian sid/main amd64 libc6 amd64 2.37-16 [2754 kB] Get:4 http://localhost:3142/debian sid/main amd64 libc-bin amd64 2.37-16 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5308 kB in 0s (156 MB/s) (Reading database ... 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Setting up libc6-dev:amd64 (2.37-16) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libbio-samtools-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Please use: git clone https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 352 kB of source archives. Get:1 http://localhost:3142/debian sid/main libbio-samtools-perl 1.43-5 (dsc) [2228 B] Get:2 http://localhost:3142/debian sid/main libbio-samtools-perl 1.43-5 (tar) [341 kB] Get:3 http://localhost:3142/debian sid/main libbio-samtools-perl 1.43-5 (diff) [9360 B] Fetched 352 kB in 0s (6625 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-YHfZ5r/libbio-samtools-perl-1.43' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-samtools-perl-YHfZ5r' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libbam-dev, libmodule-build-perl, perl-xs-dev, perl:amd64, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libbam-dev, libmodule-build-perl, perl-xs-dev, perl:amd64, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [815 B] Get:5 copy:/<>/apt_archive ./ Packages [828 B] Fetched 2252 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbam-dev:armhf libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdb5.3t64:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgdbm-compat4t64:armhf libgdbm6t64:armhf libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libmodule-build-perl libperl-dev:armhf libperl5.38t64:armhf libpipeline1 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf gdbm-l10n:armhf libstdc++-13-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbam-dev:armhf libbz2-1.0:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdb5.3t64:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgdbm-compat4t64:armhf libgdbm6t64:armhf libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libmodule-build-perl libperl-dev:armhf libperl5.38t64:armhf libpipeline1 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf zlib1g:armhf zlib1g-dev:armhf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 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sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:43 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:44 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:45 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:46 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:49 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:50 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:51 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:53 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:54 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:56 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:57 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:58 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:60 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:63 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:64 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:65 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:66 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:68 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:69 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:70 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:71 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-23 [44.5 kB] Get:72 http://localhost:3142/debian sid/main armhf gcc-14-base armhf 14-20240330-1 [43.2 kB] Get:73 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 14-20240330-1 [36.8 kB] Get:74 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-16 [2133 kB] Get:75 http://localhost:3142/debian sid/main armhf libasan8 armhf 14-20240330-1 [2578 kB] Get:76 http://localhost:3142/debian sid/main armhf libatomic1 armhf 14-20240330-1 [7044 B] Get:77 http://localhost:3142/debian sid/main armhf zlib1g armhf 1:1.3.dfsg-3.1 [74.4 kB] Get:78 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-4 [96.1 kB] Get:79 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-4 [125 kB] Get:80 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-16 [1269 kB] Get:81 http://localhost:3142/debian sid/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get:82 http://localhost:3142/debian sid/main armhf libbam-dev armhf 0.1.19+dfsg-6 [105 kB] Get:83 http://localhost:3142/debian sid/main armhf libbz2-1.0 armhf 1.0.8-5.1 [34.8 kB] Get:84 http://localhost:3142/debian sid/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [597 kB] Get:85 http://localhost:3142/debian sid/main armhf libgomp1 armhf 14-20240330-1 [111 kB] Get:86 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 14-20240330-1 [607 kB] Get:87 http://localhost:3142/debian sid/main armhf libubsan1 armhf 14-20240330-1 [1037 kB] Get:88 http://localhost:3142/debian sid/main armhf libgcc-13-dev armhf 13.2.0-23 [781 kB] Get:89 http://localhost:3142/debian sid/main armhf libgdbm6t64 armhf 1.23-5.1+b1 [69.1 kB] Get:90 http://localhost:3142/debian sid/main armhf libgdbm-compat4t64 armhf 1.23-5.1+b1 [48.4 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmodule-build-perl all 0.423400-2 [252 kB] Get:92 http://localhost:3142/debian sid/main armhf libperl5.38t64 armhf 5.38.2-3.2+b2 [3571 kB] Get:93 http://localhost:3142/debian sid/main armhf libperl-dev armhf 5.38.2-3.2+b2 [974 kB] Get:94 http://localhost:3142/debian sid/main armhf libstdc++-13-dev armhf 13.2.0-23 [2263 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.8 MB in 0s (192 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12865 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... 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Preparing to unpack .../89-libmodule-build-perl_0.423400-2_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423400-2) ... Selecting previously unselected package libperl5.38t64:armhf. Preparing to unpack .../90-libperl5.38t64_5.38.2-3.2+b2_armhf.deb ... Unpacking libperl5.38t64:armhf (5.38.2-3.2+b2) ... Selecting previously unselected package libperl-dev:armhf. Preparing to unpack .../91-libperl-dev_5.38.2-3.2+b2_armhf.deb ... Unpacking libperl-dev:armhf (5.38.2-3.2+b2) ... Selecting previously unselected package libstdc++-13-dev:armhf. Preparing to unpack .../92-libstdc++-13-dev_13.2.0-23_armhf.deb ... Unpacking libstdc++-13-dev:armhf (13.2.0-23) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armhf. 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Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up libmodule-build-perl (0.423400-2) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:armhf (13.2.0-23) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-arm-linux-gnueabihf-base:amd64 (13.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up binutils-arm-linux-gnueabihf (2.42-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14-20240127-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (14-20240127-1cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14-20240127-1cross1) ... Setting up libubsan1-armhf-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up libasan8-armhf-cross (14-20240127-1cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-armhf-cross (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (14-20240330-1) ... Setting up libc6:armhf (2.37-16) ... Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ... Setting up libasan8:armhf (14-20240330-1) ... Setting up libbz2-1.0:armhf (1.0.8-5.1) ... Setting up libstdc++6:armhf (14-20240330-1) ... Setting up libgdbm6t64:armhf (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:armhf (1.23-5.1+b1) ... Setting up zlib1g:armhf (1:1.3.dfsg-3.1) ... Setting up libcrypt1:armhf (1:4.4.36-4) ... Setting up libgomp1:armhf (14-20240330-1) ... Setting up libatomic1:armhf (14-20240330-1) ... Setting up libubsan1:armhf (14-20240330-1) ... Setting up libgcc-13-dev:armhf (13.2.0-23) ... Setting up libcrypt-dev:armhf (1:4.4.36-4) ... Setting up libc6-dev:armhf (2.37-16) ... Setting up libperl5.38t64:armhf (5.38.2-3.2+b2) ... Setting up libstdc++-13-dev:armhf (13.2.0-23) ... Setting up libperl-dev:armhf (5.38.2-3.2+b2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up libbam-dev:armhf (0.1.19+dfsg-6) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-16) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-16 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-armhf-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-armhf-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-arm-linux-gnueabihf_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40-5 bsdutils_1:2.40-5 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-23 cpp-13-arm-linux-gnueabihf_13.2.0-12cross1 cpp-13-x86-64-linux-gnu_13.2.0-23 cpp-arm-linux-gnueabihf_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-armhf_12.10 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-23 g++-13-arm-linux-gnueabihf_13.2.0-12cross1 g++-13-x86-64-linux-gnu_13.2.0-23 g++-arm-linux-gnueabihf_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-23 gcc-13-arm-linux-gnueabihf_13.2.0-12cross1 gcc-13-arm-linux-gnueabihf-base_13.2.0-12cross1 gcc-13-base_13.2.0-23 gcc-13-cross-base_13.2.0-12cross1 gcc-13-x86-64-linux-gnu_13.2.0-23 gcc-14-base_14-20240330-1 gcc-14-cross-base_14-20240127-1cross1 gcc-arm-linux-gnueabihf_4:13.2.0-7 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3+b1 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-1 libapt-pkg6.0t64_2.7.14 libarchive-zip-perl_1.68-1 libasan8_14-20240330-1 libasan8-armhf-cross_14-20240127-1cross1 libatomic1_14-20240330-1 libatomic1-armhf-cross_14-20240127-1cross1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbam-dev_0.1.19+dfsg-6 libbinutils_2.42-4 libblkid1_2.40-5 libbz2-1.0_1.0.8-5.1 libc-bin_2.37-16 libc-dev-bin_2.37-16 libc6_2.37-16 libc6-armhf-cross_2.37-12cross1 libc6-dev_2.37-16 libc6-dev-armhf-cross_2.37-12cross1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcc1-0_14-20240330-1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-samtools-perl Binary: libbio-samtools-perl Architecture: any Version: 1.43-5 Maintainer: Debian Perl Group Uploaders: Charles Plessy Homepage: https://metacpan.org/release/Bio-SamTools Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-samtools-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libbam-dev, libbio-perl-perl , libmodule-build-perl, perl-xs-dev, perl:native, zlib1g-dev Package-List: libbio-samtools-perl deb perl optional arch=any Checksums-Sha1: 140779726f17ef29f1a6028b34ed836d0a85f24c 340833 libbio-samtools-perl_1.43.orig.tar.gz 9fd7cc61c130c2572d782e1433950b32dbe984d1 9360 libbio-samtools-perl_1.43-5.debian.tar.xz Checksums-Sha256: 7085ee5e97ad75dbbebd8583072d67b2b06d29e7a9f9741c9ac58dabe300d3fd 340833 libbio-samtools-perl_1.43.orig.tar.gz 51d780410bbdae748dc6ab0d4134872d9ccf7397b4d43583d552afc5d1649865 9360 libbio-samtools-perl_1.43-5.debian.tar.xz Files: d36d7bfe91d6eaa8d220a2cb08d04a94 340833 libbio-samtools-perl_1.43.orig.tar.gz 776ffbac8666f9382a4ae3e8ad76667a 9360 libbio-samtools-perl_1.43-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXwxWURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHAkg/+PQPjhQsf9eS5Tiy0STA5jPSAwXr4Bext BHpSigEFJixsNJrgnzfhSiuPd1BFy7HbAGRWthOFlx8KThATn43oE/w1ga0MPvv1 RFsHM13X1yUphqWWiNdAyQCum3v9IySJPIKTWoEbTK5tLsxy1FAA6zeO8kItog9W 2cD4cazn9w/Kc7IJCVlpWVjbVkqgtHJoBK+TORpgmVVROoWXScYB2zauCy5Y4bVs xfSIH6cNMcEIlFxIkck1g5DpAI95GIE4nYw2+VpigaPZuVOaSMbVRsAsRytsnI8X DjrZ+mSmDE+ixQiBGOjJPwgmOEKTp9aYJiiqmXlv5IOYHJDcvJwkBpc8hfK9lIIE 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applying 0001-Lift-prototypes-of-bam_view1-and-bam_sort_core-from-.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.zU3zupU6Hw/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-122cbb84-188a-4b3b-8a4e-210ef76925be SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libbio-samtools-perl dpkg-buildpackage: info: source version 1.43-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' SAMTOOLS=/usr/include/samtools dh_auto_configure PERL5LIB=/usr/lib/arm-linux-gnueabihf/perl/cross-config-5.38.2 /usr/bin/perl Build.PL --installdirs vendor --config "optimize=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Found /usr/include/samtools/bam.h and //lib/libbam.a. Checking prerequisites... requires: ! Bio::Root::Version is not installed ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-SamTools' version '1.43' make[1]: Leaving directory '/<>' dh_auto_build -a PERL5LIB=/usr/lib/arm-linux-gnueabihf/perl/cross-config-5.38.2 /usr/bin/perl Build Building Bio-SamTools arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' '-D_TIME_BITS=64' -Wdate-time '-D_FORTIFY_SOURCE=2' -o c_bin/bam2bedgraph.o c_bin/bam2bedgraph.c arm-linux-gnueabihf-gcc -I/usr/include/samtools -Ic_bin -I/usr/lib/arm-linux-gnueabihf/perl/5.38/CORE '-DVERSION="1.43"' '-DXS_VERSION="1.43"' -fPIC '-D_IOLIB=2' '-D_FILE_OFFSET_BITS=64' '-Wformat=0' -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -D_LARGEFILE_SOURCE '-D_FILE_OFFSET_BITS=64' '-D_TIME_BITS=64' -Wdate-time '-D_FORTIFY_SOURCE=2' -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/Sam/Sam.bs') arm-linux-gnueabihf-gcc -g -O2 '-Werror=implicit-function-declaration' '-ffile-prefix-map=/<>=.' -fstack-protector-strong -fstack-clash-protection -Wformat '-Werror=format-security' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/DB/Sam/Sam.so lib/Bio/DB/Sam.o c_bin/bam2bedgraph.o -L//lib -lbam -lpthread -lz make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: error adding symbols: file in wrong format collect2: error: ld returned 1 exit status make[1]: *** [makefile:17: bam2bedgraph] Error 1 make[1]: Leaving directory '/<>/c_bin' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libbio-samtools-perl/ -a PERL5LIB=/usr/lib/arm-linux-gnueabihf/perl/cross-config-5.38.2 /usr/bin/perl Build install --destdir /<>/debian/libbio-samtools-perl --create_packlist 0 Building Bio-SamTools make[1]: Entering directory '/<>/c_bin' gcc -g -Wall -O2 -fPIC -o bam2bedgraph bam2bedgraph.o -Wl,-z,relro -Wl,-z,now -L//lib -lbam -lpthread -lm -lz /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: relocations in generic ELF (EM: 40) /usr/bin/ld: bam2bedgraph.o: error adding symbols: file in wrong format collect2: error: ld returned 1 exit status make[1]: *** [makefile:17: bam2bedgraph] Error 1 make[1]: Leaving directory '/<>/c_bin' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/Sam/Sam.so Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/Sam/Sam.bs Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/Segment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/SamToGBrowse.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/Constants.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Target.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/ReadIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Query.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/PileupWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Pileup.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/FetchIterator.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Alignment.pm Installing /<>/debian/libbio-samtools-perl/usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/AlignWrapper.pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam::Constants.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Sam.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Target.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Query.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Pileup.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::Alignment.3pm Installing /<>/debian/libbio-samtools-perl/usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm Installing /<>/debian/libbio-samtools-perl/usr/bin/genomeCoverageBed.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/chrom_sizes.pl Installing /<>/debian/libbio-samtools-perl/usr/bin/bamToGBrowse.pl dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libbio-samtools-perl' in '../libbio-samtools-perl_1.43-5_armhf.deb'. dpkg-deb: building package 'libbio-samtools-perl-dbgsym' in '../libbio-samtools-perl-dbgsym_1.43-5_armhf.deb'. dpkg-genbuildinfo --build=any -O../libbio-samtools-perl_1.43-5_armhf.buildinfo dpkg-genchanges --build=any -O../libbio-samtools-perl_1.43-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-10T17:08:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-samtools-perl_1.43-5_armhf.changes: ------------------------------------------ Format: 1.8 Date: Tue, 12 Mar 2024 22:11:21 +0100 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 1.43-5 Distribution: unstable Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-samtools-perl - Perl interface to SamTools library for DNA sequencing Closes: 1065759 Changes: libbio-samtools-perl (1.43-5) unstable; urgency=medium . * Team upload. . [ Niko Tyni ] * Add missing prototypes Closes: #1065759 . [ Andreas Tille ] * Remove trailing whitespace in debian/changelog (routine-update) Checksums-Sha1: 29b28a7cca96e7a10fd9a4fd3d808605db50e1a0 109608 libbio-samtools-perl-dbgsym_1.43-5_armhf.deb 86945bcc1c0b96cee72457c25012d22196b438e9 5365 libbio-samtools-perl_1.43-5_armhf.buildinfo ecca61c698c2ed0a18e7ed653e94c3daacd578fa 157132 libbio-samtools-perl_1.43-5_armhf.deb Checksums-Sha256: cdd313a19400008cdcb2830c951566a86b214e62e6fc65bb2ae598de76861aea 109608 libbio-samtools-perl-dbgsym_1.43-5_armhf.deb 1e9dd14e169a1212fd4a2053dac4b979913dfb102734e215f74ffde341f2408c 5365 libbio-samtools-perl_1.43-5_armhf.buildinfo 1aa8ecbcc9a35a8d02477047146be048a5831959628f0656dc79c925c8232f14 157132 libbio-samtools-perl_1.43-5_armhf.deb Files: 72076ded1188a70e0267119a28b706e5 109608 debug optional libbio-samtools-perl-dbgsym_1.43-5_armhf.deb 2831f433b4bfe5c0f116e217c78b1b4b 5365 perl optional libbio-samtools-perl_1.43-5_armhf.buildinfo 8b302edeb2ac179cf94f9121aad4988c 157132 perl optional libbio-samtools-perl_1.43-5_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-samtools-perl Binary: libbio-samtools-perl libbio-samtools-perl-dbgsym Architecture: armhf Version: 1.43-5 Checksums-Md5: 72076ded1188a70e0267119a28b706e5 109608 libbio-samtools-perl-dbgsym_1.43-5_armhf.deb 8b302edeb2ac179cf94f9121aad4988c 157132 libbio-samtools-perl_1.43-5_armhf.deb Checksums-Sha1: 29b28a7cca96e7a10fd9a4fd3d808605db50e1a0 109608 libbio-samtools-perl-dbgsym_1.43-5_armhf.deb ecca61c698c2ed0a18e7ed653e94c3daacd578fa 157132 libbio-samtools-perl_1.43-5_armhf.deb Checksums-Sha256: cdd313a19400008cdcb2830c951566a86b214e62e6fc65bb2ae598de76861aea 109608 libbio-samtools-perl-dbgsym_1.43-5_armhf.deb 1aa8ecbcc9a35a8d02477047146be048a5831959628f0656dc79c925c8232f14 157132 libbio-samtools-perl_1.43-5_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 10 Apr 2024 17:08:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40-5), bsdutils (= 1:2.40-5), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbam-dev (= 0.1.19+dfsg-6), libbinutils (= 2.42-4), libblkid1 (= 2.40-5), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-16), libc-dev-bin (= 2.37-16), libc6 (= 2.37-16), libc6-dev (= 2.37-16), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libhwasan0 (= 14-20240330-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmodule-build-perl (= 0.423400-2), libmount1 (= 2.40-5), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl-dev (= 5.38.2-3.2+b2), libperl5.38t64 (= 5.38.2-3.2+b2), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14-20240330-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40-5), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40-5), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2+b2), perl-base (= 5.38.2-3.2+b2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40-5), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1710277881" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-samtools-perl-dbgsym_1.43-5_armhf.deb -------------------------------------------- new Debian package, version 2.0. size 109608 bytes: control archive=544 bytes. 412 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libbio-samtools-perl-dbgsym Source: libbio-samtools-perl Version: 1.43-5 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Perl Group Installed-Size: 137 Depends: libbio-samtools-perl (= 1.43-5) Section: debug Priority: optional Description: debug symbols for libbio-samtools-perl Build-Ids: cc6dc7a2fab14f0f26877b3d8f01962cf441fe75 drwxr-xr-x root/root 0 2024-03-12 21:11 ./ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/debug/.build-id/cc/ -rw-r--r-- root/root 129656 2024-03-12 21:11 ./usr/lib/debug/.build-id/cc/6dc7a2fab14f0f26877b3d8f01962cf441fe75.debug drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl-dbgsym -> libbio-samtools-perl libbio-samtools-perl_1.43-5_armhf.deb ------------------------------------- new Debian package, version 2.0. size 157132 bytes: control archive=1708 bytes. 990 bytes, 19 lines control 2520 bytes, 29 lines md5sums Package: libbio-samtools-perl Version: 1.43-5 Architecture: armhf Maintainer: Debian Perl Group Installed-Size: 369 Depends: perl (>= 5.38.2-3.2+b2), perlapi-5.38.2, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-SamTools Description: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. drwxr-xr-x root/root 0 2024-03-12 21:11 ./ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/bin/ -rwxr-xr-x root/root 2087 2024-03-12 21:11 ./usr/bin/bamToGBrowse.pl -rwxr-xr-x root/root 331 2024-03-12 21:11 ./usr/bin/chrom_sizes.pl -rwxr-xr-x root/root 283 2024-03-12 21:11 ./usr/bin/genomeCoverageBed.pl drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/ -rw-r--r-- root/root 11925 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/AlignWrapper.pm -rw-r--r-- root/root 17627 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Alignment.pm -rw-r--r-- root/root 335 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/FetchIterator.pm -rw-r--r-- root/root 2404 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Pileup.pm -rw-r--r-- root/root 1891 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/PileupWrapper.pm -rw-r--r-- root/root 4636 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Query.pm -rw-r--r-- root/root 402 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/ReadIterator.pm -rw-r--r-- root/root 1046 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Bam/Target.pm -rw-r--r-- root/root 77823 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam.pm drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/ -rw-r--r-- root/root 2296 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/Constants.pm -rw-r--r-- root/root 12026 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/SamToGBrowse.pm -rw-r--r-- root/root 2284 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/Bio/DB/Sam/Segment.pm drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/Sam/ -rw-r--r-- root/root 0 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/Sam/Sam.bs -rw-r--r-- root/root 149796 2024-03-12 21:11 ./usr/lib/arm-linux-gnueabihf/perl5/5.38/auto/Bio/DB/Sam/Sam.so drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/ -rw-r--r-- root/root 1018 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/changelog.Debian.gz -rw-r--r-- root/root 3563 2016-02-12 19:31 ./usr/share/doc/libbio-samtools-perl/changelog.gz -rw-r--r-- root/root 11606 2024-03-12 21:11 ./usr/share/doc/libbio-samtools-perl/copyright drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 132 2024-03-12 21:11 ./usr/share/lintian/overrides/libbio-samtools-perl drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-12 21:11 ./usr/share/man/man3/ -rw-r--r-- root/root 1608 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::AlignWrapper.3pm.gz -rw-r--r-- root/root 6584 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Alignment.3pm.gz -rw-r--r-- root/root 1986 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Pileup.3pm.gz -rw-r--r-- root/root 1328 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::PileupWrapper.3pm.gz -rw-r--r-- root/root 1991 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Query.3pm.gz -rw-r--r-- root/root 1011 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Bam::Target.3pm.gz -rw-r--r-- root/root 19665 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Sam.3pm.gz -rw-r--r-- root/root 1476 2024-03-12 21:11 ./usr/share/man/man3/Bio::DB::Sam::Constants.3pm.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1397 B] Get:5 copy:/<>/apt_archive ./ Packages [1446 B] Fetched 3458 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.7 MB of additional disk space will be used. 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Get:86 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:95 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:99 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:101 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:103 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:107 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:112 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:114 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:116 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:120 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:122 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:126 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:127 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:128 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:129 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (79.0 MB/s) Selecting previously unselected package netbase. (Reading database ... 18342 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../006-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... 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Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2+b2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b3_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... 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Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../074-libnet-ssleay-perl_1.94-1+b1_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-1+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../075-libio-socket-ssl-perl_2.085-1_all.deb ... Unpacking libio-socket-ssl-perl (2.085-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../076-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../077-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../078-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... 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Preparing to unpack .../128-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:amd64 (1.14-1) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... 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Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-16) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2760 Build-Time: 6 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 12 Job: libbio-samtools-perl_1.43-5 Lintian: pass Machine Architecture: amd64 Package: libbio-samtools-perl Package-Time: 28 Source-Version: 1.43-5 Space: 2760 Status: successful Version: 1.43-5 -------------------------------------------------------------------------------- Finished at 2024-04-10T17:08:02Z Build needed 00:00:28, 2760k disk space