sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | libbpp-phyl 2.4.1-9 (armhf) Mon, 14 Aug 2023 14:34:52 +0000 | +==============================================================================+ Package: libbpp-phyl Version: 2.4.1-9 Source Version: 2.4.1-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-1199b627-9dd1-4eb7-a6b8-79e943e6de59' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-2rOkzG/resolver-8XKNqc' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [210 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-14-0805.47-F-2023-08-14-0203.23.pdiff [23.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-14-0805.47-F-2023-08-14-0203.23.pdiff [14.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-08-14-0805.47-F-2023-08-14-0203.23.pdiff [23.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-08-14-0805.47-F-2023-08-14-0203.23.pdiff [14.1 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9142 kB] Fetched 9516 kB in 3s (3741 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libbpp-phyl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-phyl.git Please use: git clone https://salsa.debian.org/med-team/libbpp-phyl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 661 kB of source archives. Get:1 http://localhost:3142/debian sid/main libbpp-phyl 2.4.1-9 (dsc) [2258 B] Get:2 http://localhost:3142/debian sid/main libbpp-phyl 2.4.1-9 (tar) [600 kB] Get:3 http://localhost:3142/debian sid/main libbpp-phyl 2.4.1-9 (diff) [58.4 kB] Fetched 661 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libbpp-phyl-2rOkzG/libbpp-phyl-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-2rOkzG' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [747 B] Get:5 copy:/<>/apt_archive ./ Packages [790 B] Fetched 2146 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cmake cmake-data cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbpp-core-dev:armhf libbpp-core4:armhf libbpp-seq-dev:armhf libbpp-seq12:armhf libbrotli1 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libjsoncpp25 libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:armhf libnsl2:armhf libpipeline1 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf procps sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf krb5-doc:armhf krb5-user:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf ca-certificates libarchive-cpio-perl krb5-locales:armhf libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cmake cmake-data cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libbpp-core-dev:armhf libbpp-core4:armhf libbpp-seq-dev:armhf libbpp-seq12:armhf libbrotli1 libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu72 libio-string-perl libjsoncpp25 libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libnsl-dev:armhf libnsl2:armhf libpipeline1 libproc2-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 118 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After this operation, 399 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20230625-2 [134 kB] Get:4 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.3-1 [63.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.3-1 [762 kB] Get:6 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-13 [160 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-2 [1176 kB] Get:13 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.39.1-4 [88.4 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-3 [1386 kB] Get:16 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-13 [496 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.41-4 [3243 kB] Get:23 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:24 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [686 kB] Get:25 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get:26 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:27 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-3 [19.3 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-3 [56.6 kB] Get:29 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:30 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.55.1-1 [72.8 kB] Get:31 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:32 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:33 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.11.0-2 [214 kB] Get:34 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 8.2.1-1 [388 kB] Get:35 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:36 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6 [79.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:38 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:39 http://localhost:3142/debian sid/main amd64 cmake-data all 3.27.2-1 [2102 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake amd64 3.27.2-1 [10.3 MB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-2cross1 [39.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-2cross1 [9272 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.2.0-1 [4124 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-2cross1 [35.2 kB] Get:46 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-3cross1 [868 kB] Get:47 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 13.2.0-2cross1 [36.4 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 13.2.0-2cross1 [103 kB] Get:49 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 13.2.0-2cross1 [6752 B] Get:50 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 13.2.0-2cross1 [2410 kB] Get:51 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 13.2.0-2cross1 [545 kB] Get:52 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 13.2.0-2cross1 [967 kB] Get:53 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armhf-cross all 13.2.0-2cross1 [783 kB] Get:54 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf amd64 13.2.0-2cross1 [18.2 MB] Get:55 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:13.2.0-1 [1476 B] Get:56 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.3.7-1cross1 [1878 kB] Get:57 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.37-3cross1 [1264 kB] Get:58 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armhf-cross all 13.2.0-2cross1 [2207 kB] Get:59 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabihf amd64 13.2.0-2cross1 [10.2 MB] Get:60 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:13.2.0-1 [1180 B] Get:61 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:62 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:68 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:70 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:72 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:73 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:74 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:75 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB] Get:76 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:77 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:78 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:81 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:83 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.189-4 [174 kB] Get:84 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:85 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-13 [1300 kB] Get:86 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:89 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.4.0-2 [39.2 kB] Get:90 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-2 [39.3 kB] Get:91 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 13.2.0-2 [36.5 kB] Get:92 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-7 [2130 kB] Get:93 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.4.0-2 [1970 kB] Get:94 http://localhost:3142/debian sid/main armhf libatomic1 armhf 13.2.0-2 [7012 B] Get:95 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 13.2.0-2 [593 kB] Get:96 http://localhost:3142/debian sid/main armhf libbpp-core4 armhf 2.4.1-11 [524 kB] Get:97 http://localhost:3142/debian sid/main armhf libbpp-core-dev armhf 2.4.1-11 [958 kB] Get:98 http://localhost:3142/debian sid/main armhf libbpp-seq12 armhf 2.4.1-10 [433 kB] Get:99 http://localhost:3142/debian sid/main armhf libbpp-seq-dev armhf 2.4.1-10 [739 kB] Get:100 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 6.4.4-3 [1758 kB] Get:101 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-2 [95.7 kB] Get:102 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-2 [125 kB] Get:103 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.47.0-2 [18.9 kB] Get:104 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20.1-2 [29.3 kB] Get:105 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20.1-2 [74.4 kB] Get:106 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-2 [7832 B] Get:107 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.10-1 [1664 kB] Get:108 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20.1-2 [287 kB] Get:109 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20.1-2 [111 kB] Get:110 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB] Get:111 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:112 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB] Get:113 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:114 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-7 [1267 kB] Get:115 http://localhost:3142/debian sid/main armhf libgomp1 armhf 13.2.0-2 [105 kB] Get:116 http://localhost:3142/debian sid/main armhf libubsan1 armhf 13.2.0-2 [968 kB] Get:117 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.4.0-2 [708 kB] Get:118 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.4.0-2 [1990 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 104 MB in 1s (175 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14526 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.4+20230625-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20230625-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.3-1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.3-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.3-1_amd64.deb ... Unpacking procps (2:4.0.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... 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Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libnghttp2-14:amd64 (1.55.1-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up linux-libc-dev:armhf (6.4.4-3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-3) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up gcc-13-base:armhf (13.2.0-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up gcc-13-cross-base (13.2.0-2cross1) ... Setting up libproc2-0:amd64 (2:4.0.3-1) ... Setting up linux-libc-dev-armhf-cross (6.3.7-1cross1) ... Setting up autopoint (0.21-13) ... Setting up libjsoncpp25:amd64 (1.9.5-6) ... Setting up d-shlibs (0.104) ... Setting up libncursesw6:amd64 (6.4+20230625-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-3) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-arm-linux-gnueabihf-base:amd64 (13.2.0-2cross1) ... Setting up sensible-utils (0.0.20) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.3-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.11.0-2) ... Setting up cmake-data (3.27.2-1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up binutils-arm-linux-gnueabihf (2.41-4) ... Setting up libelf1:amd64 (0.189-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (13.2.0-2cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-13) ... Setting up cpp-13-arm-linux-gnueabihf (13.2.0-2cross1) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libgcc-s1-armhf-cross (13.2.0-2cross1) ... Setting up libc6-dev-armhf-cross (2.37-3cross1) ... Setting up libatomic1-armhf-cross (13.2.0-2cross1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (13.2.0-2cross1) ... Setting up libubsan1-armhf-cross (13.2.0-2cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libcurl4:amd64 (8.2.1-1) ... Setting up cpp-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up libasan8-armhf-cross (13.2.0-2cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-armhf-cross (13.2.0-2cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.27.2-1) ... Setting up libstdc++-13-dev-armhf-cross (13.2.0-2cross1) ... Setting up debhelper (13.11.4) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-2cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-2cross1) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armhf (12.10) ... Setting up libgcc-s1:armhf (13.2.0-2) ... Setting up libc6:armhf (2.37-7) ... Setting up libstdc++6:armhf (13.2.0-2) ... Setting up libkeyutils1:armhf (1.6.3-2) ... Setting up libssl3:armhf (3.0.10-1) ... Setting up libcrypt1:armhf (1:4.4.36-2) ... Setting up libcom-err2:armhf (1.47.0-2) ... Setting up libgomp1:armhf (13.2.0-2) ... Setting up libasan6:armhf (11.4.0-2) ... Setting up libkrb5support0:armhf (1.20.1-2) ... Setting up libbpp-core4:armhf (2.4.1-11) ... Setting up libatomic1:armhf (13.2.0-2) ... Setting up libk5crypto3:armhf (1.20.1-2) ... Setting up libubsan1:armhf (13.2.0-2) ... Setting up libgcc-11-dev:armhf (11.4.0-2) ... Setting up libcrypt-dev:armhf (1:4.4.36-2) ... Setting up libkrb5-3:armhf (1.20.1-2) ... Setting up libbpp-seq12:armhf (2.4.1-10) ... Setting up libbpp-core-dev:armhf (2.4.1-11) ... Setting up libgssapi-krb5-2:armhf (1.20.1-2) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up libbpp-seq-dev:armhf (2.4.1-10) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.37-7) ... Setting up libstdc++-11-dev:armhf (11.4.0-2) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) amd64 (x86_64) Toolchain package versions: binutils_2.41-4 dpkg-dev_1.21.22 g++-11_11.4.0-2 g++-13_13.2.0-2 gcc-11_11.4.0-2 gcc-13_13.2.0-2 libc6-dev_2.37-7 libstdc++-11-dev_11.4.0-2 libstdc++-13-dev_13.2.0-2 libstdc++-13-dev-armhf-cross_13.2.0-2cross1 libstdc++6_13.2.0-2 libstdc++6-armhf-cross_13.2.0-2cross1 linux-libc-dev_6.4.4-3 Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.1 bash_5.2.15-2+b4 binutils_2.41-4 binutils-arm-linux-gnueabihf_2.41-4 binutils-common_2.41-4 binutils-x86-64-linux-gnu_2.41-4 bsdextrautils_2.39.1-4 bsdutils_1:2.39.1-4 build-essential_12.10 bzip2_1.0.8-5+b1 cmake_3.27.2-1 cmake-data_3.27.2-1 coreutils_9.1-1 cpp_4:13.2.0-1 cpp-11_11.4.0-2 cpp-13_13.2.0-2 cpp-13-arm-linux-gnueabihf_13.2.0-2cross1 cpp-arm-linux-gnueabihf_4:13.2.0-1 cross-config_2.6.20 crossbuild-essential-armhf_12.10 d-shlibs_0.104 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.4 debianutils_5.8-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22 dpkg-cross_2.6.20 dpkg-dev_1.21.22 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1 g++-11_11.4.0-2 g++-13_13.2.0-2 g++-13-arm-linux-gnueabihf_13.2.0-2cross1 g++-arm-linux-gnueabihf_4:13.2.0-1 gcc_4:13.2.0-1 gcc-11_11.4.0-2 gcc-11-base_11.4.0-2 gcc-12-base_12.3.0-7 gcc-13_13.2.0-2 gcc-13-arm-linux-gnueabihf_13.2.0-2cross1 gcc-13-arm-linux-gnueabihf-base_13.2.0-2cross1 gcc-13-base_13.2.0-2 gcc-13-cross-base_13.2.0-2cross1 gcc-9-base_9.5.0-4 gcc-arm-linux-gnueabihf_4:13.2.0-1 gettext_0.21-13 gettext-base_0.21-13 gpgv_2.2.40-1.1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan6_11.4.0-2 libasan8_13.2.0-2 libasan8-armhf-cross_13.2.0-2cross1 libatomic1_13.2.0-2 libatomic1-armhf-cross_13.2.0-2cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-4 libblkid1_2.39.1-4 libbpp-core-dev_2.4.1-11 libbpp-core4_2.4.1-11 libbpp-seq-dev_2.4.1-10 libbpp-seq12_2.4.1-10 libbrotli1_1.0.9-2+b6 libbz2-1.0_1.0.8-5+b1 libc-bin_2.37-7 libc-dev-bin_2.37-7 libc6_2.37-7 libc6-armhf-cross_2.37-3cross1 libc6-dev_2.37-7 libc6-dev-armhf-cross_2.37-3cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-4 libcc1-0_13.2.0-2 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-4 libctf0_2.41-4 libcurl4_8.2.1-1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.22 libelf1_0.189-4 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.4.0-2 libgcc-13-dev_13.2.0-2 libgcc-13-dev-armhf-cross_13.2.0-2cross1 libgcc-s1_13.2.0-2 libgcc-s1-armhf-cross_13.2.0-2cross1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-3 libgomp1_13.2.0-2 libgomp1-armhf-cross_13.2.0-2cross1 libgpg-error0_1.46-1 libgprofng0_2.41-4 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.9.1-2 libhwasan0_13.2.0-2 libicu72_72.1-3 libidn2-0_2.3.4-1 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Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl.git Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbpp-seq-dev Package-List: libbpp-phyl-dev deb libdevel optional arch=any libbpp-phyl12 deb libs optional arch=any Checksums-Sha1: fe6808b427b667d4d2609e887dad9f571771a1d2 600392 libbpp-phyl_2.4.1.orig.tar.gz 1f56c98d8bc3e8c8b9a9a8ec8e1d1795cbb1482e 58372 libbpp-phyl_2.4.1-9.debian.tar.xz Checksums-Sha256: e7bf7d4570f756b7773904ffa600ffcd77c965553ddb5cbc252092d1da962ff2 600392 libbpp-phyl_2.4.1.orig.tar.gz d5354bbb329c35ba2bc01dd0cb9f5239753a3deb49b19228421b7b1e87698437 58372 libbpp-phyl_2.4.1-9.debian.tar.xz Files: 05c58ac05a1f7525888df2b04c4a800c 600392 libbpp-phyl_2.4.1.orig.tar.gz eb204afebb3436723b1f3fd7a1e854e6 58372 libbpp-phyl_2.4.1-9.debian.tar.xz Dgit: a3e77393163a2c814ab22369d64304a1fed233f5 debian archive/debian/2.4.1-9 https://git.dgit.debian.org/libbpp-phyl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTYsoAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq4NhAArbsCR3jZzOyCWUZDt0sKklpgYgCL 2E9g8RJI8gKN+AJqS0VynEnEZ1z8KS8yJVw2fRKCTmc0dP4wXr1JJ6yvMZeK5lXD LZUDcVjelScBEE2a/z7+hlXbacY/Kmz8GZkCSpr0oVT7OfRBcdPfov4L9NkijtAS fin/DiQSXpkFro0420TGcrwcsOFZmdLpvuvKTVjjU2a8UutEuLvl0my3SerljdNm +SZiaUvlyUS3MaNOW7RmWLqOJSp9E26vTFZy5Gj1HnCjsBmXpOHdm+gawwQVarSC LnxDDrZZvUf6qsOQFrbtaFgWB9cOPy1yyieQd+29/O7iN5yIaQ/oTFzf0OXWKEPi d4182Y1mSuOQFqGpg4CYHjA9z3Y0A0MgDrik5z5TuZ2gWH7xt3jBLlk/cORtKrMj dm74T69gSAKOatAuMXJbOd7ontWllWVNs75TO7eOFK0YXL6Rapf72JxaFCGnngl0 QxPgY7gOZBaglDFmcaVtAOAXh0PX64Gm4Z7bZunfBAEoanCME3plm2vkxuqrquT3 5eMDJOF7z8X+CMLMLXpj6qKGDcDydzefYFqsfLHGDDfJ3N3RoKdl4NRL47l8WcpY zTrwbPmvvHM4Hj+bcyhzOoLg2iEceIJiIk6FV9WDS6Y1GHV0rfFBvbwy3F53ZmZx hJqNGzcm5OuCgxk= =knNF -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 13 10:37:52 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-phyl_2.4.1-9.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-phyl in /<> dpkg-source: info: unpacking libbpp-phyl_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl_2.4.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying remove_test_likelihood_nh.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-1199b627-9dd1-4eb7-a6b8-79e943e6de59 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libbpp-phyl dpkg-buildpackage: info: source version 2.4.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=armv7l -DCMAKE_C_COMPILER=arm-linux-gnueabihf-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabihf-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabihf-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (0.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabihf dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/src /<>/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-phyl-static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-phyl-static.dir/build.make src/CMakeFiles/bpp-phyl-static.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/App/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/App/../Tree.h:43, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘static bpp::MultipleDiscreteDistribution* bpp::PhylogeneticsApplicationTools::getMultipleDistributionDefaultInstance(const std::string&, std::map, std::__cxx11::basic_string >&, bool)’ at /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:674:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 0%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<>/src/Bpp/Phyl/BipartitionList.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<>/src/Bpp/Phyl/BipartitionTools.cpp [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 1%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<>/src/Bpp/Phyl/Distance/BioNJ.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 2%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<>/src/Bpp/Phyl/Distance/PGMA.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 3%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::BppOFrequenciesSetFormat::initialize_(bpp::FrequenciesSet&, const bpp::SiteContainer*)’ at /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:763:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:119:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:124:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:146:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:147:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:172:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::PairedSiteLikelihoods bpp::IOTreepuzzlePairedSiteLikelihoods::read(std::istream&)’ at /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:106:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘static std::vector bpp::IOPhymlPairedSiteLikelihoods::read(std::istream&)’ at /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:261:29: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoTreeFactory.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<>/src/Bpp/Phyl/Io/Newick.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<>/src/Bpp/Phyl/Io/NexusIoTree.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<>/src/Bpp/Phyl/Io/Nhx.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Io/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:195:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 195 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:195:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:30, inlined from ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:225:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1563:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1563 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:31, inlined from ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:225:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1563:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1563 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp [ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:137:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:137:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:261:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:261:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:180:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:180:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 11%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:184:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:184:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’ at /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:85:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’ at /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:91:59: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘void bpp::BranchLikelihood::computeLogLikelihood()’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘void bpp::BranchLikelihood::computeLogLikelihood()’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NNIHomogeneousTreeLikelihood::doNNI(int)’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:337:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual double bpp::NNIHomogeneousTreeLikelihood::testNNI(int) const’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:303:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:147:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:153:59: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:129:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:129:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:73:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:73:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:170:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:170:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:730:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:737:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:176:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:176:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 17%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 18%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:98:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:80:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:81:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:80:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:81:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:144:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:145:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:414:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:422:76: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:422:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:428:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:442:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:446:76: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:446:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:238:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:238:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 23%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KCM.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:115:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:116:27: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:120:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 26%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YN98.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M1::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:135:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M1::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:136:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M10::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:151:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:140:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:141:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:142:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:51: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:51: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M3::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:182:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:61:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:64:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:69:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:61:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:64:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:69:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M7::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:137:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M8::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:150:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:64:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:65:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:64:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:65:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M9::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:150:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:66:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:66:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:98:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:300:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:310:18: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::FullCodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:143:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:98:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:104:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:104:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::MvaFrequenciesSet::updateFrequencies()’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:96:24: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::MixtureOfASubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:266:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:108:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:109:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:108:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:109:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:74:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:75:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:74:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:75:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:150:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:151:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:150:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:151:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:449:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:450:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:451:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:452:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:130:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:131:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:132:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:133:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:460:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:461:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:462:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:463:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::L95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:115:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::L95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:115:45: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:74: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:85: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:96: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95s::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:474:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95s::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:474:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SSR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:112:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SSR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:113:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:33: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:57: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:68: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:79: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:432:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:433:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:434:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:435:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/Coala.h:46, from /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::Coala::computeEquilibriumFrequencies()’ at /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:132:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’ at /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:93:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’ at /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:97:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/DSO78.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JCprot.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:68:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:69:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:68:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:69:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/WAG01.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<>/src/Bpp/Phyl/Model/RE08.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<>/src/Bpp/Phyl/Model/StateMap.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<>/src/Bpp/Phyl/NNITopologySearch.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:133:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 133 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function ‘void bpp::NNITopologySearch::searchPhyML()’: /<>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 290 | improvement.insert(improvement.begin() + static_cast(pos), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 296 | improvement.insert(improvement.end(), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::NNITopologySearch::searchBetter()’ at /<>/src/Bpp/Phyl/NNITopologySearch.cpp:188:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Node.cpp.o -c /<>/src/Bpp/Phyl/Node.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<>/src/Bpp/Phyl/OptimizationTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 43%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PatternTools.cpp.o -c /<>/src/Bpp/Phyl/PatternTools.cpp [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<>/src/Bpp/Phyl/PhyloStatistics.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::PhyloStatistics::computeForSubtree_(const bpp::Node*, double&, size_t&)’ at /<>/src/Bpp/Phyl/PhyloStatistics.cpp:104:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::MutationPath::addEvent(size_t, double)’ at /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:125:23, inlined from ‘virtual bpp::MutationPath bpp::AbstractMutationProcess::detailedEvolve(size_t, double) const’ at /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:114:16: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Simulation/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’ at /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:121:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<>/src/Bpp/Phyl/SitePatterns.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<>/src/Bpp/Phyl/TreeExceptions.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTemplateTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::Vdouble bpp::TreeTemplateTools::getBranchLengths(const bpp::Node&)’ at /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:517:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -MF CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o.d -o CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/TreeTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::Vdouble bpp::TreeTools::getBranchLengths(const bpp::Tree&, int)’ at /<>/src/Bpp/Phyl/TreeTools.cpp:484:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 46%] Linking CXX static library libbpp-phyl.a cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-static.dir/cmake_clean_target.cmake cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-static.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-ar qc libbpp-phyl.a "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionList.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/BipartitionTools.cpp.o" "CMakeFiles/bpp-phyl-static.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o" 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[ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o -c /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/App/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/App/../Tree.h:43, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.h:44, from /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘static bpp::MultipleDiscreteDistribution* bpp::PhylogeneticsApplicationTools::getMultipleDistributionDefaultInstance(const std::string&, std::map, std::__cxx11::basic_string >&, bool)’ at /<>/src/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp:674:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o -c /<>/src/Bpp/Phyl/BipartitionList.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/BipartitionList.h:43, from /<>/src/Bpp/Phyl/BipartitionList.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 46%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o -c /<>/src/Bpp/Phyl/BipartitionTools.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp.o -c /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/BioNJ.cpp.o -c /<>/src/Bpp/Phyl/Distance/BioNJ.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/BioNJ.h:43, from /<>/src/Bpp/Phyl/Distance/BioNJ.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/DistanceEstimation.cpp.o -c /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Distance/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.h:44, from /<>/src/Bpp/Phyl/Distance/DistanceEstimation.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/HierarchicalClustering.cpp.o -c /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.h:44, from /<>/src/Bpp/Phyl/Distance/HierarchicalClustering.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/NeighborJoining.cpp.o -c /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.h:44, from /<>/src/Bpp/Phyl/Distance/NeighborJoining.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Distance/PGMA.cpp.o -c /<>/src/Bpp/Phyl/Distance/PGMA.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Distance/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Distance/../Node.h:43, from /<>/src/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h:45, from /<>/src/Bpp/Phyl/Distance/PGMA.h:43, from /<>/src/Bpp/Phyl/Distance/PGMA.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 48%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp.o -c /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/CladogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.h:45, from /<>/src/Bpp/Phyl/Graphics/CladogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/PhylogramPlot.cpp.o -c /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Graphics/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Graphics/AbstractTreeDrawing.h:43, from /<>/src/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.h:43, from /<>/src/Bpp/Phyl/Graphics/PhylogramPlot.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Graphics/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Graphics/TreeDrawingListener.cpp.o -c /<>/src/Bpp/Phyl/Graphics/TreeDrawingListener.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Io/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Io/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::BppOFrequenciesSetFormat::initialize_(bpp::FrequenciesSet&, const bpp::SiteContainer*)’ at /<>/src/Bpp/Phyl/Io/BppOFrequenciesSetFormat.cpp:763:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppORateDistributionFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Io/IoDiscreteDistributionFactory.h:43, from /usr/include/Bpp/Io/BppODiscreteDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.h:43, from /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:119:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:124:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:146:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:147:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual bpp::DiscreteDistribution* bpp::BppORateDistributionFormat::read(const std::string&, bool)’ at /<>/src/Bpp/Phyl/Io/BppORateDistributionFormat.cpp:172:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOSubstitutionModelFormat.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTransitionModelFormat.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeReaderFormat.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/BppOTreeWriterFormat.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoDistanceMatrixFactory.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoFrequenciesSetFactory.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::PairedSiteLikelihoods bpp::IOTreepuzzlePairedSiteLikelihoods::read(std::istream&)’ at /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:106:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘static std::vector bpp::IOPhymlPairedSiteLikelihoods::read(std::istream&)’ at /<>/src/Bpp/Phyl/Io/IoPairedSiteLikelihoods.cpp:261:29: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoSubstitutionModelFactory.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/IoTreeFactory.cpp.o -c /<>/src/Bpp/Phyl/Io/IoTreeFactory.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Newick.cpp.o -c /<>/src/Bpp/Phyl/Io/Newick.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/NexusIoTree.cpp.o -c /<>/src/Bpp/Phyl/Io/NexusIoTree.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/Nhx.cpp.o -c /<>/src/Bpp/Phyl/Io/Nhx.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Io/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Io/../Tree.h:43, from /<>/src/Bpp/Phyl/Io/IoTree.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.h:43, from /<>/src/Bpp/Phyl/Io/Nhx.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Io/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp.o -c /<>/src/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.cpp [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:195:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 195 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:195:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:211:30, inlined from ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:225:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1563:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1563 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::DRASDRTreeLikelihoodNodeData::eraseNeighborArrays()’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h:212:31, inlined from ‘void bpp::DRASDRTreeLikelihoodData::reInit(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.cpp:225:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1563:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1563 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:137:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::DRHomogeneousMixedTreeLikelihood::DRHomogeneousMixedTreeLikelihood(const bpp::DRHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:137:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:261:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousMixedTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.cpp:261:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:180:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.cpp:180:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:184:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::DRNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.cpp:184:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h:43, from /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’ at /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:85:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void bpp::GlobalClockTreeLikelihoodFunctionWrapper::initParameters_()’ at /<>/src/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.cpp:91:59: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Sequence.h:44, from /<>/src/Bpp/Phyl/Likelihood/../AncestralStateReconstruction.h:44, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h:43, from /<>/src/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘void bpp::BranchLikelihood::computeLogLikelihood()’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘void bpp::BranchLikelihood::computeLogLikelihood()’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:115:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::NNIHomogeneousTreeLikelihood::doNNI(int)’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:337:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual double bpp::NNIHomogeneousTreeLikelihood::testNNI(int) const’ at /<>/src/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.cpp:303:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RASTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RASTools.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Utils/MapTools.h:43, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:46, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = const bpp::Node*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:147:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = const bpp::Node*; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RHomogeneousClockTreeLikelihood::initBranchLengthsParameters(bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.cpp:153:59: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h:42, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:129:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::RHomogeneousMixedTreeLikelihood&)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:129:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:73:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, const bpp::SiteContainer&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::RHomogeneousMixedTreeLikelihood::RHomogeneousMixedTreeLikelihood(const bpp::Tree&, bpp::TransitionModel*, bpp::DiscreteDistribution*, bool, bool, bool)’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.cpp:73:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:170:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.cpp:170:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:730:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::RNonHomogeneousMixedTreeLikelihood::computeTransitionProbabilitiesForNode(const bpp::Node*)’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.cpp:737:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:61, from /usr/arm-linux-gnueabihf/include/c++/13/algorithm:61, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:55, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:176:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1950:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:4861:18, inlined from ‘virtual double bpp::RNonHomogeneousTreeLikelihood::getLogLikelihood() const’ at /<>/src/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.cpp:176:7: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp.o -c /<>/src/Bpp/Phyl/Likelihood/TreeLikelihoodTools.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionMethods.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionMethods.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionReward.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionReward.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/NaiveSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp.o -c /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/RewardMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/RewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/RewardMappingTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Mapping/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Mapping/../Tree.h:43, from /<>/src/Bpp/Phyl/Mapping/Mapping.h:45, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.h:43, from /<>/src/Bpp/Phyl/Mapping/SubstitutionMappingTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Mapping/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/SubstitutionRegister.cpp.o -c /<>/src/Bpp/Phyl/Mapping/SubstitutionRegister.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp.o -c /<>/src/Bpp/Phyl/Mapping/WeightedSubstitutionCount.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:98:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel& bpp::AbstractMixedSubstitutionModel::operator=(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:99:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:80:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:81:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:80:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::AbstractMixedSubstitutionModel::AbstractMixedSubstitutionModel(const bpp::AbstractMixedSubstitutionModel&)’ at /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.cpp:81:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:144:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::AbstractSubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.cpp:145:32: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:414:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:422:76: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:422:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:428:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:442:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:446:76: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::AbstractWordSubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/AbstractWordSubstitutionModel.cpp:446:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/BinarySubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/AbstractSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:238:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::BinarySubstitutionModel::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/BinarySubstitutionModel.cpp:238:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/GY94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/GY94.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KCM.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KCM.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/MG94.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/MG94.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/SENCA.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h:43, from /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h:44, from /<>/src/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h:44, from /<>/src/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.h:43, from /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:115:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:116:27: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SENCA::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Codon/SENCA.cpp:120:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YN98.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YN98.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M1.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M1::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:135:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M1::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:136:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:59:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M1::YNGP_M1(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M1.cpp:60:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M10.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M10::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:151:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M10::YNGP_M10(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M10.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M2.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:140:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:141:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M2::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:142:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:51: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:34: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:58:51: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M2::YNGP_M2(const bpp::GeneticCode*, bpp::FrequenciesSet*)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M2.cpp:59:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M3.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M3::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:182:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:61:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:64:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:69:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:61:15: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:64:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M3::YNGP_M3(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M3.cpp:69:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M7.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M7::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M7.cpp:137:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M8.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M8::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:150:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:64:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:65:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:64:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:65:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:31: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M8::YNGP_M8(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M8.cpp:70:52: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Codon/YNGP_M9.cpp.o -c /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Codon/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/../AbstractBiblioMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.h:43, from /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::YNGP_M9::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:150:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::YNGP_M9::YNGP_M9(const bpp::GeneticCode*, bpp::FrequenciesSet*, unsigned int, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Codon/YNGP_M9.cpp:72:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:66:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:66:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:98:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:300:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::FullPerAACodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:310:18: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::FullCodonFrequenciesSet::setFrequencies(const std::vector >&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:143:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::FullCodonFrequenciesSet::FullCodonFrequenciesSet(const bpp::GeneticCode*, const std::vector >&, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.cpp:98:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:104:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bpp::FullFrequenciesSet::FullFrequenciesSet(bpp::StateMap*, bool, short unsigned int, const std::string&)’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.cpp:104:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h:46, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h:43, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::MvaFrequenciesSet::updateFrequencies()’ at /<>/src/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.cpp:96:24: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp.o -c /<>/src/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/FromMixtureSubstitutionModel.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/InMixedSubstitutionModel.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/MixedSubstitutionModelSet.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixedSubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h:42, from /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual void bpp::MixtureOfASubstitutionModel::updateMatrices()’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:266:19: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:108:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:109:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:108:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfASubstitutionModel::MixtureOfASubstitutionModel(const bpp::Alphabet*, bpp::SubstitutionModel*, std::map, bpp::DiscreteDistribution*>, int, int)’ at /<>/src/Bpp/Phyl/Model/MixtureOfASubstitutionModel.cpp:109:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp.o -c /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:74:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:75:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:74:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:75:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:150:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:151:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:150:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::MixtureOfSubstitutionModels::MixtureOfSubstitutionModels(const bpp::Alphabet*, std::vector, bpp::Vdouble&, bpp::Vdouble&)’ at /<>/src/Bpp/Phyl/Model/MixtureOfSubstitutionModels.cpp:151:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/F84.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:449:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:450:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:451:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::F84::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/F84.cpp:452:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/GTR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:130:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:131:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:132:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::GTR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/GTR.cpp:133:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 78%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/HKY85.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:460:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:461:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:462:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::HKY85::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/HKY85.cpp:463:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/JCnuc.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/K80.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/K80.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/L95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::L95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:115:36: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::L95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/L95.cpp:115:45: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:63: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:74: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:85: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:524:96: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:525:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:38: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95.cpp:526:61: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/RN95s.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95s::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:474:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::RN95s::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/RN95s.cpp:474:50: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/SSR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SSR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:112:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::SSR::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/SSR.cpp:113:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/T92.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:33: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:46: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:57: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:68: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::T92::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/T92.cpp:460:79: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/TN93.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h:52, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:49, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/../StateMap.h:45, from /<>/src/Bpp/Phyl/Model/Nucleotide/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Nucleotide/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.h:43, from /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:432:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:433:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:434:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void bpp::TN93::setFreq(std::map&)’ at /<>/src/Bpp/Phyl/Model/Nucleotide/TN93.cpp:435:17: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/YpR.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/YpR.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Nucleotide/gBGC.cpp.o -c /<>/src/Bpp/Phyl/Model/Nucleotide/gBGC.cpp [ 81%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeTransitionModel.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/Coala.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/Coala.h:46, from /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void bpp::Coala::computeEquilibriumFrequencies()’ at /<>/src/Bpp/Phyl/Model/Protein/Coala.cpp:132:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/CoalaCore.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/Matrix/Matrix.h:48, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.h:45, from /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:41: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’ at /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:93:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bpp::ParameterList bpp::CoalaCore::computeCOA(const bpp::SequenceContainer&, bool)’ at /<>/src/Bpp/Phyl/Model/Protein/CoalaCore.cpp:97:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/DSO78.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/DSO78.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JCprot.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JCprot.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/JTT92.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/JTT92.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG08.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG08.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Model/Protein/../SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:68:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:69:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:68:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LG10_EX_EHO::LG10_EX_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LG10_EX_EHO.cpp:69:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LGL08_CAT::LGL08_CAT(const bpp::ProteicAlphabet*, unsigned int)’ at /<>/src/Bpp/Phyl/Model/Protein/LGL08_CAT.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EHO::LLG08_EHO(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EHO.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX2::LLG08_EX2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_EX3::LLG08_EX3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_EX3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:64:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL2::LLG08_UL2(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL2.cpp:65:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /<>/src/Bpp/Phyl/Model/Protein/../MixtureOfSubstitutionModels.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.h:43, from /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:39: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:65:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘bpp::LLG08_UL3::LLG08_UL3(const bpp::ProteicAlphabet*)’ at /<>/src/Bpp/Phyl/Model/Protein/LLG08_UL3.cpp:66:20: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/Protein/WAG01.cpp.o -c /<>/src/Bpp/Phyl/Model/Protein/WAG01.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RE08.cpp.o -c /<>/src/Bpp/Phyl/Model/RE08.cpp [ 86%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/StateMap.cpp.o -c /<>/src/Bpp/Phyl/Model/StateMap.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSet.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSet.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp.o -c /<>/src/Bpp/Phyl/Model/SubstitutionModelSetTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Model/WordSubstitutionModel.cpp.o -c /<>/src/Bpp/Phyl/Model/WordSubstitutionModel.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/NNITopologySearch.cpp.o -c /<>/src/Bpp/Phyl/NNITopologySearch.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /<>/src/Bpp/Phyl/TopologySearch.h:48, from /<>/src/Bpp/Phyl/NNITopologySearch.h:43, from /<>/src/Bpp/Phyl/NNITopologySearch.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:133:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 133 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp: In member function ‘void bpp::NNITopologySearch::searchPhyML()’: /<>/src/Bpp/Phyl/NNITopologySearch.cpp:290:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 290 | improvement.insert(improvement.begin() + static_cast(pos), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/Bpp/Phyl/NNITopologySearch.cpp:296:31: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 296 | improvement.insert(improvement.end(), diff); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::NNITopologySearch::searchBetter()’ at /<>/src/Bpp/Phyl/NNITopologySearch.cpp:188:30: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Node.cpp.o -c /<>/src/Bpp/Phyl/Node.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/OptimizationTools.cpp.o -c /<>/src/Bpp/Phyl/OptimizationTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Likelihood/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Likelihood/../Node.h:43, from /<>/src/Bpp/Phyl/Likelihood/TreeLikelihood.h:43, from /<>/src/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h:44, from /<>/src/Bpp/Phyl/OptimizationTools.h:43, from /<>/src/Bpp/Phyl/OptimizationTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyData.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp.o -c /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/Parsimony/../TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:44, from /<>/src/Bpp/Phyl/Parsimony/TreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h:43, from /<>/src/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Parsimony/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PatternTools.cpp.o -c /<>/src/Bpp/Phyl/PatternTools.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/PhyloStatistics.cpp.o -c /<>/src/Bpp/Phyl/PhyloStatistics.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/Tree.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.h:43, from /<>/src/Bpp/Phyl/PhyloStatistics.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::PhyloStatistics::computeForSubtree_(const bpp::Node*, double&, size_t&)’ at /<>/src/Bpp/Phyl/PhyloStatistics.cpp:104:25: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/MutationProcess.cpp.o -c /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/../StateMap.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/FrequenciesSet/FrequenciesSet.h:44, from /<>/src/Bpp/Phyl/Simulation/../Model/SubstitutionModel.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:43, from /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void bpp::MutationPath::addEvent(size_t, double)’ at /<>/src/Bpp/Phyl/Simulation/MutationProcess.h:125:23, inlined from ‘virtual bpp::MutationPath bpp::AbstractMutationProcess::detailedEvolve(size_t, double) const’ at /<>/src/Bpp/Phyl/Simulation/MutationProcess.cpp:114:16: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp.o -c /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/Alphabet.h:45, from /usr/include/Bpp/Seq/SymbolList.h:43, from /usr/include/Bpp/Seq/Site.h:43, from /<>/src/Bpp/Phyl/Simulation/SiteSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:45, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h:44, from /<>/src/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.cpp:42: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/Simulation/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’ at /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:121:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp.o -c /<>/src/Bpp/Phyl/Simulation/SequenceSimulationTools.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/SitePatterns.cpp.o -c /<>/src/Bpp/Phyl/SitePatterns.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeExceptions.cpp.o -c /<>/src/Bpp/Phyl/TreeExceptions.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTemplateTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTemplateTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTemplateTools.h:45, from /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:42: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::Vdouble bpp::TreeTemplateTools::getBranchLengths(const bpp::Node&)’ at /<>/src/Bpp/Phyl/TreeTemplateTools.cpp:517:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/arm-linux-gnueabihf-g++ -Dbpp_phyl_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT src/CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -MF CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o.d -o CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/TreeTools.cpp.o -c /<>/src/Bpp/Phyl/TreeTools.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTools.h:43, from /<>/src/Bpp/Phyl/TreeTools.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Distance/../Likelihood/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘static bpp::Vdouble bpp::TreeTools::getBranchLengths(const bpp::Tree&, int)’ at /<>/src/Bpp/Phyl/TreeTools.cpp:484:22: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 92%] Linking CXX shared library libbpp-phyl.so cd /<>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-shared.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl.so.12 -o libbpp-phyl.so.12.0.0 "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/App/PhylogeneticsApplicationTools.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionList.cpp.o" "CMakeFiles/bpp-phyl-shared.dir/Bpp/Phyl/BipartitionTools.cpp.o" 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/<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_bowker.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_bowker.dir/build.make test/CMakeFiles/test_bowker.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 93%] Building CXX object test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_bowker.dir/test_bowker.cpp.o -MF CMakeFiles/test_bowker.dir/test_bowker.cpp.o.d -o CMakeFiles/test_bowker.dir/test_bowker.cpp.o -c /<>/test/test_bowker.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /<>/test/test_bowker.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 93%] Linking CXX executable test_bowker cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bowker.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_bowker.dir/test_bowker.cpp.o -o test_bowker -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 93%] Built target test_bowker make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_detailed_simulations.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_detailed_simulations.dir/build.make test/CMakeFiles/test_detailed_simulations.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 93%] Building CXX object test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -MF CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o.d -o CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -c /<>/test/test_detailed_simulations.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:62, from /usr/include/Bpp/Numeric/AbstractParametrizable.h:47, from /usr/include/Bpp/Numeric/Function/Functions.h:45, from /usr/include/Bpp/Numeric/NumTools.h:43, from /usr/include/Bpp/Numeric/VectorTools.h:44, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/ConstantDistribution.h:43, from /<>/test/test_detailed_simulations.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main()’ at /<>/test/test_detailed_simulations.cpp:86:16: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main()’ at /<>/test/test_detailed_simulations.cpp:88:110: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main()’ at /<>/test/test_detailed_simulations.cpp:94:24: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’ at /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:121:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 93%] Linking CXX executable test_detailed_simulations cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_detailed_simulations.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_detailed_simulations.dir/test_detailed_simulations.cpp.o -o test_detailed_simulations -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 93%] Built target test_detailed_simulations make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_likelihood.dir/build.make test/CMakeFiles/test_likelihood.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 94%] Building CXX object test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -MF CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o.d -o CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -c /<>/test/test_likelihood.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Prob/DiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/AbstractDiscreteDistribution.h:43, from /usr/include/Bpp/Numeric/Prob/GammaDiscreteDistribution.h:43, from /<>/test/test_likelihood.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 94%] Linking CXX executable test_likelihood cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood.dir/test_likelihood.cpp.o -o test_likelihood -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 94%] Built target test_likelihood make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_likelihood_clock.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_likelihood_clock.dir/build.make test/CMakeFiles/test_likelihood_clock.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 94%] Building CXX object test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -MF CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o.d -o CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -c /<>/test/test_likelihood_clock.cpp [ 95%] Linking CXX executable test_likelihood_clock cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_likelihood_clock.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_likelihood_clock.dir/test_likelihood_clock.cpp.o -o test_likelihood_clock -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Built target test_likelihood_clock make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_mapping.dir/build.make test/CMakeFiles/test_mapping.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Building CXX object test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_mapping.dir/test_mapping.cpp.o -MF CMakeFiles/test_mapping.dir/test_mapping.cpp.o.d -o CMakeFiles/test_mapping.dir/test_mapping.cpp.o -c /<>/test/test_mapping.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’ at /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:121:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 95%] Linking CXX executable test_mapping cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping.dir/test_mapping.cpp.o -o test_mapping -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Built target test_mapping make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_mapping_codon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_mapping_codon.dir/build.make test/CMakeFiles/test_mapping_codon.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 95%] Building CXX object test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -MF CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o.d -o CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -c /<>/test/test_mapping_codon.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/test/test_mapping_codon.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 96%] Linking CXX executable test_mapping_codon cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mapping_codon.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_mapping_codon.dir/test_mapping_codon.cpp.o -o test_mapping_codon -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Built target test_mapping_codon make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_models.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_models.dir/build.make test/CMakeFiles/test_models.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Building CXX object test/CMakeFiles/test_models.dir/test_models.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_models.dir/test_models.cpp.o -MF CMakeFiles/test_models.dir/test_models.cpp.o.d -o CMakeFiles/test_models.dir/test_models.cpp.o -c /<>/test/test_models.cpp [ 96%] Linking CXX executable test_models cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_models.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_models.dir/test_models.cpp.o -o test_models -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Built target test_models make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_nhx.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_nhx.dir/build.make test/CMakeFiles/test_nhx.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 96%] Building CXX object test/CMakeFiles/test_nhx.dir/test_nhx.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_nhx.dir/test_nhx.cpp.o -MF CMakeFiles/test_nhx.dir/test_nhx.cpp.o.d -o CMakeFiles/test_nhx.dir/test_nhx.cpp.o -c /<>/test/test_nhx.cpp [ 97%] Linking CXX executable test_nhx cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_nhx.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_nhx.dir/test_nhx.cpp.o -o test_nhx -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Built target test_nhx make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_parsimony.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_parsimony.dir/build.make test/CMakeFiles/test_parsimony.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Building CXX object test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -MF CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o.d -o CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -c /<>/test/test_parsimony.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h:45, from /usr/include/Bpp/Seq/Alphabet/DNA.h:44, from /usr/include/Bpp/Seq/Alphabet/AlphabetTools.h:43, from /<>/test/test_parsimony.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/Io/../TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 97%] Linking CXX executable test_parsimony cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parsimony.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_parsimony.dir/test_parsimony.cpp.o -o test_parsimony -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Built target test_parsimony make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_simulations.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_simulations.dir/build.make test/CMakeFiles/test_simulations.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Building CXX object test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_simulations.dir/test_simulations.cpp.o -MF CMakeFiles/test_simulations.dir/test_simulations.cpp.o.d -o CMakeFiles/test_simulations.dir/test_simulations.cpp.o -c /<>/test/test_simulations.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Numeric/VectorExceptions.h:47, from /usr/include/Bpp/Numeric/VectorTools.h:43, from /usr/include/Bpp/Numeric/Matrix/MatrixTools.h:43, from /<>/test/test_simulations.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::NodeTemplate]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bpp::MutationPath&}; _Tp = bpp::MutationPath; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = bpp::MutationPath; _Alloc = std::allocator]’, inlined from ‘virtual void bpp::SiteSimulationResult::addNode(int, bpp::MutationPath)’ at /<>/src/Bpp/Phyl/Simulation/DetailedSiteSimulator.h:121:23: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main()’ at /<>/test/test_simulations.cpp:76:21: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 98%] Linking CXX executable test_simulations cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_simulations.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_simulations.dir/test_simulations.cpp.o -o test_simulations -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Built target test_simulations make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree.dir/build.make test/CMakeFiles/test_tree.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Building CXX object test/CMakeFiles/test_tree.dir/test_tree.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree.dir/test_tree.cpp.o -MF CMakeFiles/test_tree.dir/test_tree.cpp.o.d -o CMakeFiles/test_tree.dir/test_tree.cpp.o -c /<>/test/test_tree.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 98%] Linking CXX executable test_tree cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree.dir/test_tree.cpp.o -o test_tree -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 98%] Built target test_tree make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_getpath.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree_getpath.dir/build.make test/CMakeFiles/test_tree_getpath.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 99%] Building CXX object test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -MF CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o.d -o CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -c /<>/test/test_tree_getpath.cpp [ 99%] Linking CXX executable test_tree_getpath cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_getpath.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_getpath.dir/test_tree_getpath.cpp.o -o test_tree_getpath -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 99%] Built target test_tree_getpath make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/test /<>/obj-arm-linux-gnueabihf/test/CMakeFiles/test_tree_rootat.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_tree_rootat.dir/build.make test/CMakeFiles/test_tree_rootat.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 99%] Building CXX object test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/arm-linux-gnueabihf-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -MD -MT test/CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -MF CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o.d -o CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -c /<>/test/test_tree_rootat.cpp In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:72, from /usr/include/Bpp/Text/TextTools.h:49, from /<>/src/Bpp/Phyl/TreeExceptions.h:44, from /<>/src/Bpp/Phyl/TreeTemplate.h:44, from /<>/test/test_tree_rootat.cpp:40: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabihf/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’ at /<>/src/Bpp/Phyl/TreeTemplate.h:351:69: /usr/arm-linux-gnueabihf/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking CXX executable test_tree_rootat cd /<>/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tree_rootat.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_tree_rootat.dir/test_tree_rootat.cpp.o -o test_tree_rootat -Wl,-rpath,/<>/obj-arm-linux-gnueabihf/src ../src/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target test_tree_rootat make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplateTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeTemplate.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TreeExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Tree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/TopologySearch.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/SitePatterns.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/MutationProcess.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/PhyloStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/PatternTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/OptimizationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NodeTemplate.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Node.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NNITopologySearch.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/NNISearchable.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/WrappedModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/TS98.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/SubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/StateMap.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/RE08.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/WAG01.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/LG08.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JTT92.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/JCprot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/DSO78.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Protein/Coala.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/G2001.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/YN98.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/SENCA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/MG94.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/KCM.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/GY94.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWrappedModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/RewardMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Reward.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/Mapping.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/RASTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/Nhx.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/NexusIoTree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/Newick.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTreeFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoTree.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/PGMA.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/NeighborJoining.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceMethod.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/BioNJ.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/BipartitionTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/BipartitionList.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/App -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Phyl/AncestralStateReconstruction.h -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.a debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-phyl-dev PKGSHL=libbpp-phyl12 install -d -m 755 debian/libbpp-phyl-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-dev/usr/include install -d -m 755 debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-phyl-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-phyl12/usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libbpp-phyl-dev' in '../libbpp-phyl-dev_2.4.1-9_armhf.deb'. dpkg-deb: building package 'libbpp-phyl12' in '../libbpp-phyl12_2.4.1-9_armhf.deb'. dpkg-deb: building package 'libbpp-phyl12-dbgsym' in '../libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb'. dpkg-genbuildinfo --build=any -O../libbpp-phyl_2.4.1-9_armhf.buildinfo dpkg-genchanges --build=any -O../libbpp-phyl_2.4.1-9_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-14T15:00:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbpp-phyl_2.4.1-9_armhf.changes: ---------------------------------- Format: 1.8 Date: Sun, 13 Aug 2023 12:13:20 +0200 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 libbpp-phyl12-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 2.4.1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl12 - Bio++ Phylogenetic library Closes: 1037718 Changes: libbpp-phyl (2.4.1-9) unstable; urgency=medium . * Team upload. * d/*.symbols*: mark some gcc specific symbols as optional. (Closes: #1037718) * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 8ebc4527e3647ea968f854ab16a9cbd6ed981630 3140424 libbpp-phyl-dev_2.4.1-9_armhf.deb e4fd4c7ed449da47a3a0b98c3abe123b7a5eeb3f 36309800 libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb b84d43f3e7b9627e3703f4ed76c8d65997820fea 1440688 libbpp-phyl12_2.4.1-9_armhf.deb ccf5182cbdfba64021eefb2d04ca15de25554074 6676 libbpp-phyl_2.4.1-9_armhf.buildinfo Checksums-Sha256: 9b3faa227f2930db2adc1cef03e423cb584e69403d0fc69ce388b4d1d5fd8b55 3140424 libbpp-phyl-dev_2.4.1-9_armhf.deb 1b5522f21bf8355a880b161bcb98318a677efcfddc1276a90049d1474a187f59 36309800 libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb 64f15ac1a953ecaa7641390e301b584217d2eb342af83fde2e8601e663b49876 1440688 libbpp-phyl12_2.4.1-9_armhf.deb f45e83af6f197867ac97d51faf19cc28128e0b3ca344f1393de91db02947e82a 6676 libbpp-phyl_2.4.1-9_armhf.buildinfo Files: 0de35873601554180f72825a58f8002b 3140424 libdevel optional libbpp-phyl-dev_2.4.1-9_armhf.deb 589ea504a6fbf74ebe95fe9396e9f94c 36309800 debug optional libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb ecc0ae8a4e76020a1e6d6a318ecbe4d8 1440688 libs optional libbpp-phyl12_2.4.1-9_armhf.deb 2ae3c3220f049e099130e1bfc1394604 6676 science optional libbpp-phyl_2.4.1-9_armhf.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 libbpp-phyl12-dbgsym Architecture: armhf Version: 2.4.1-9 Checksums-Md5: 0de35873601554180f72825a58f8002b 3140424 libbpp-phyl-dev_2.4.1-9_armhf.deb 589ea504a6fbf74ebe95fe9396e9f94c 36309800 libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb ecc0ae8a4e76020a1e6d6a318ecbe4d8 1440688 libbpp-phyl12_2.4.1-9_armhf.deb Checksums-Sha1: 8ebc4527e3647ea968f854ab16a9cbd6ed981630 3140424 libbpp-phyl-dev_2.4.1-9_armhf.deb e4fd4c7ed449da47a3a0b98c3abe123b7a5eeb3f 36309800 libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb b84d43f3e7b9627e3703f4ed76c8d65997820fea 1440688 libbpp-phyl12_2.4.1-9_armhf.deb Checksums-Sha256: 9b3faa227f2930db2adc1cef03e423cb584e69403d0fc69ce388b4d1d5fd8b55 3140424 libbpp-phyl-dev_2.4.1-9_armhf.deb 1b5522f21bf8355a880b161bcb98318a677efcfddc1276a90049d1474a187f59 36309800 libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb 64f15ac1a953ecaa7641390e301b584217d2eb342af83fde2e8601e663b49876 1440688 libbpp-phyl12_2.4.1-9_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 14 Aug 2023 15:00:16 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), apt (= 2.7.3), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.1), bash (= 5.2.15-2+b4), binutils (= 2.41-4), binutils-common (= 2.41-4), binutils-x86-64-linux-gnu (= 2.41-4), bsdextrautils (= 2.39.1-4), bsdutils (= 1:2.39.1-4), build-essential (= 12.10), bzip2 (= 1.0.8-5+b1), cmake (= 3.27.2-1), cmake-data (= 3.27.2-1), coreutils (= 9.1-1), cpp (= 4:13.2.0-1), cpp-11 (= 11.4.0-2), cpp-13 (= 13.2.0-2), d-shlibs (= 0.104), dash (= 0.5.12-6), debconf (= 1.5.82), debhelper (= 13.11.4), debian-archive-keyring (= 2023.4), debianutils (= 5.8-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1), g++-13 (= 13.2.0-2), gcc (= 4:13.2.0-1), gcc-11 (= 11.4.0-2), gcc-11-base (= 11.4.0-2), gcc-13 (= 13.2.0-2), gcc-13-base (= 13.2.0-2), gettext (= 0.21-13), gettext-base (= 0.21-13), gpgv (= 2.2.40-1.1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.7.3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1), libasan6 (= 11.4.0-2), libasan8 (= 13.2.0-2), libatomic1 (= 13.2.0-2), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-4), libblkid1 (= 2.39.1-4), libbpp-core-dev (= 2.4.1-11), libbpp-core4 (= 2.4.1-11), libbpp-seq-dev (= 2.4.1-10), libbpp-seq12 (= 2.4.1-10), libbrotli1 (= 1.0.9-2+b6), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.37-7), libc-dev-bin (= 2.37-7), libc6 (= 2.37-7), libc6-dev (= 2.37-7), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 13.2.0-2), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4), libctf0 (= 2.41-4), libcurl4 (= 8.2.1-1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdpkg-perl (= 1.21.22), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.4.0-2), libgcc-13-dev (= 13.2.0-2), libgcc-s1 (= 13.2.0-2), libgcrypt20 (= 1.10.2-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2), libgnutls30 (= 3.8.1-3), libgomp1 (= 13.2.0-2), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.41-4), libgssapi-krb5-2 (= 1.20.1-2), libhogweed6 (= 3.9.1-2), libhwasan0 (= 13.2.0-2), libicu72 (= 72.1-3), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), libldap-2.5-0 (= 2.5.13+dfsg-5), liblsan0 (= 13.2.0-2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.25.0-4), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-2), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.3-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-2), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.5-1), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1), libsepol2 (= 3.5-1), libsframe1 (= 2.41-4), libsmartcols1 (= 2.39.1-4), libssh2-1 (= 1.11.0-2), libssl3 (= 3.0.10-1), libstdc++-13-dev (= 13.2.0-2), libstdc++6 (= 13.2.0-2), libsub-override-perl (= 0.09-4), libsystemd0 (= 254.1-2), libtasn1-6 (= 4.19.0-3), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-2), libtsan2 (= 13.2.0-2), libubsan1 (= 13.2.0-2), libuchardet0 (= 0.0.7-1), libudev1 (= 254.1-2), libunistring2 (= 1.0-2), libuuid1 (= 2.39.1-4), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.5+dfsg2-1), linux-libc-dev (= 6.4.4-3), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), passwd (= 1:4.13+dfsg1-1+b1), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.3-1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.39.1-4), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1691921600" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbpp-phyl-dev_2.4.1-9_armhf.deb --------------------------------- new Debian package, version 2.0. size 3140424 bytes: control archive=6660 bytes. 889 bytes, 20 lines control 19680 bytes, 225 lines md5sums Package: libbpp-phyl-dev Source: libbpp-phyl Version: 2.4.1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 30120 Depends: libbpp-phyl12 (= 2.4.1-9), libbpp-core-dev, libbpp-seq-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library development files Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the static library and the header files of the Bio++ classes for phylogenetics. drwxr-xr-x root/root 0 2023-08-13 10:13 ./ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/ -rw-r--r-- root/root 3681 2018-08-13 09:51 ./usr/include/Bpp/Phyl/AncestralStateReconstruction.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/App/ -rw-r--r-- root/root 31125 2018-08-13 09:51 ./usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h -rw-r--r-- root/root 7990 2018-08-13 09:51 ./usr/include/Bpp/Phyl/BipartitionList.h -rw-r--r-- root/root 6470 2018-08-13 09:51 ./usr/include/Bpp/Phyl/BipartitionTools.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/Distance/ -rw-r--r-- root/root 7601 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h -rw-r--r-- root/root 3862 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/BioNJ.h -rw-r--r-- root/root 18923 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/DistanceEstimation.h -rw-r--r-- root/root 3353 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/DistanceMethod.h -rw-r--r-- root/root 3978 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h -rw-r--r-- root/root 4163 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/NeighborJoining.h -rw-r--r-- root/root 4060 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Distance/PGMA.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/Graphics/ -rw-r--r-- root/root 3284 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h -rw-r--r-- root/root 12400 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h -rw-r--r-- root/root 3423 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/CladogramPlot.h -rw-r--r-- root/root 3351 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h -rw-r--r-- root/root 11685 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawing.h -rw-r--r-- root/root 6574 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h -rw-r--r-- root/root 8890 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/Io/ -rw-r--r-- root/root 4567 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h -rw-r--r-- root/root 3192 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h -rw-r--r-- root/root 7953 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h -rw-r--r-- root/root 3621 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h -rw-r--r-- root/root 3235 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h -rw-r--r-- root/root 3235 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h -rw-r--r-- root/root 4889 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h -rw-r--r-- root/root 3578 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h -rw-r--r-- root/root 4434 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h -rw-r--r-- root/root 3233 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h -rw-r--r-- root/root 4278 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h -rw-r--r-- root/root 4622 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h -rw-r--r-- root/root 3291 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h -rw-r--r-- root/root 7531 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoTree.h -rw-r--r-- root/root 3037 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/IoTreeFactory.h -rw-r--r-- root/root 6114 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/Newick.h -rw-r--r-- root/root 4349 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/NexusIoTree.h -rw-r--r-- root/root 8314 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/Nhx.h -rw-r--r-- root/root 3032 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/include/Bpp/Phyl/Likelihood/ -rw-r--r-- root/root 5194 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h -rw-r--r-- root/root 9681 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h -rw-r--r-- root/root 9980 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h -rw-r--r-- root/root 9945 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h -rw-r--r-- root/root 4829 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h -rw-r--r-- root/root 2829 2018-08-13 09:51 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2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h -rw-r--r-- root/root 12789 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/MutationProcess.h -rw-r--r-- root/root 10877 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h -rw-r--r-- root/root 4165 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h -rw-r--r-- root/root 2363 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h -rw-r--r-- root/root 2515 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Simulation/SiteSimulator.h -rw-r--r-- root/root 5513 2018-08-13 09:51 ./usr/include/Bpp/Phyl/SitePatterns.h -rw-r--r-- root/root 4172 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TopologySearch.h -rw-r--r-- root/root 14464 2018-08-13 09:51 ./usr/include/Bpp/Phyl/Tree.h -rw-r--r-- root/root 7641 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeExceptions.h -rw-r--r-- root/root 19136 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTemplate.h -rw-r--r-- root/root 44061 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTemplateTools.h -rw-r--r-- root/root 28969 2018-08-13 09:51 ./usr/include/Bpp/Phyl/TreeTools.h drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/ -rw-r--r-- root/root 2765 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config-version.cmake -rw-r--r-- root/root 2311 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-config.cmake -rw-r--r-- root/root 1539 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets-none.cmake -rw-r--r-- root/root 4586 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/cmake/bpp-phyl/bpp-phyl-targets.cmake -rw-r--r-- root/root 29152876 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.a lrwxrwxrwx root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so -> libbpp-phyl.so.12 drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl-dev/ -rw-r--r-- root/root 834 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz -rw-r--r-- root/root 7468 2018-08-13 09:51 ./usr/share/doc/libbpp-phyl-dev/changelog.gz -rw-r--r-- root/root 23165 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl-dev/copyright libbpp-phyl12-dbgsym_2.4.1-9_armhf.deb -------------------------------------- new Debian package, version 2.0. size 36309800 bytes: control archive=556 bytes. 411 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libbpp-phyl12-dbgsym Source: libbpp-phyl Version: 2.4.1-9 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 36787 Depends: libbpp-phyl12 (= 2.4.1-9) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libbpp-phyl12 Build-Ids: 81de01f40bb367047328d7f2d4158d1ff65f0050 drwxr-xr-x root/root 0 2023-08-13 10:13 ./ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/debug/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 37658924 2023-08-13 10:13 ./usr/lib/debug/.build-id/81/de01f40bb367047328d7f2d4158d1ff65f0050.debug drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/doc/ lrwxrwxrwx root/root 0 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl12-dbgsym -> libbpp-phyl12 libbpp-phyl12_2.4.1-9_armhf.deb ------------------------------- new Debian package, version 2.0. size 1440688 bytes: control archive=1024 bytes. 869 bytes, 19 lines control 313 bytes, 4 lines md5sums 40 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libbpp-phyl12 Source: libbpp-phyl Version: 2.4.1-9 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 5901 Depends: libbpp-core4 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.35), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ Phylogenetic library Bio++ is a set of C++ libraries for Bioinformatics, including sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed to be both easy to use and computer efficient. Bio++ intends to help programmers to write computer expensive programs, by providing them a set of re-usable tools. . This package contains the Bio++ classes for phylogenetics. drwxr-xr-x root/root 0 2023-08-13 10:13 ./ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12 -> libbpp-phyl.so.12.0.0 -rw-r--r-- root/root 5998012 2023-08-13 10:13 ./usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl12/ -rw-r--r-- root/root 832 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl12/changelog.Debian.gz -rw-r--r-- root/root 7468 2018-08-13 09:51 ./usr/share/doc/libbpp-phyl12/changelog.gz -rw-r--r-- root/root 23165 2023-08-13 10:13 ./usr/share/doc/libbpp-phyl12/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1329 B] Get:5 copy:/<>/apt_archive ./ Packages [1408 B] Fetched 3352 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. 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sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:56 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] 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libnet-http-perl all 6.22-1 [25.3 kB] Get:76 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.11-1 [10.5 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.72-1 [187 kB] Get:79 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:82 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:83 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-6 [37.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:97 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1 [12.5 kB] Get:100 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:104 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1 [43.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1 [99.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.38-1 [60.0 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-1 [28.8 kB] Get:111 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:113 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:117 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:118 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.17-1 [116 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:121 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-6 [63.1 kB] Get:122 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:123 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:124 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:125 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:126 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (81.3 MB/s) Selecting previously unselected package netbase. (Reading database ... 24355 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.10-1_amd64.deb ... Unpacking openssl (3.0.10-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package libreadline8:amd64. 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Setting up plzip (1.10-6) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.42.0-1) ... 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Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.083-1) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.57-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.72-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.17-1) ... Setting up liblwp-protocol-https-perl (6.11-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-7) ... Processing triggers for man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1089220 Build-Time: 1501 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 13 Job: libbpp-phyl_2.4.1-9 Lintian: pass Machine Architecture: amd64 Package: libbpp-phyl Package-Time: 1525 Source-Version: 2.4.1-9 Space: 1089220 Status: successful Version: 2.4.1-9 -------------------------------------------------------------------------------- Finished at 2023-08-14T15:00:17Z Build needed 00:25:25, 1089220k disk space