sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | libbpp-popgen 2.4.1-10 (amd64) Tue, 02 Apr 2024 07:06:55 +0000 | +==============================================================================+ Package: libbpp-popgen Version: 2.4.1-10 Source Version: 2.4.1-10 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.QncBTD92VA... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-popgen-JSz3YB/resolver-SVUw16' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.6 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9792 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9910 kB] Fetched 30.5 MB in 8s (3969 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gcc-14-base libasan8 libatomic1 libcc1-0 libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libstdc++6 libtsan2 libubsan1 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9491 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libasan8 arm64 14-20240330-1 [2571 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libubsan1 arm64 14-20240330-1 [1035 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libtsan2 arm64 14-20240330-1 [2377 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 gcc-14-base arm64 14-20240330-1 [43.3 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libstdc++6 arm64 14-20240330-1 [635 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 liblsan0 arm64 14-20240330-1 [1156 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libitm1 arm64 14-20240330-1 [23.8 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libhwasan0 arm64 14-20240330-1 [1435 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libgomp1 arm64 14-20240330-1 [123 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libcc1-0 arm64 14-20240330-1 [37.4 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libatomic1 arm64 14-20240330-1 [9932 B] Get:12 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1 arm64 14-20240330-1 [43.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9491 kB in 0s (72.7 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libbpp-popgen' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-popgen.git Please use: git clone https://salsa.debian.org/med-team/libbpp-popgen.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 142 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main libbpp-popgen 2.4.1-10 (dsc) [2197 B] Get:2 http://mirror.einval.org/debian unstable/main libbpp-popgen 2.4.1-10 (tar) [117 kB] Get:3 http://mirror.einval.org/debian unstable/main libbpp-popgen 2.4.1-10 (diff) [23.3 kB] Fetched 142 kB in 0s (532 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libbpp-popgen-JSz3YB/libbpp-popgen-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-popgen-JSz3YB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [798 B] Get:5 copy:/<>/apt_archive ./ Packages [841 B] Fetched 2248 B in 0s (123 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbpp-core-dev:amd64 libbpp-core4t64:amd64 libbpp-seq-dev:amd64 libbpp-seq12t64:amd64 libbrotli1 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libpipeline1 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf procps sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc krb5-user libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbpp-core-dev:amd64 libbpp-core4t64:amd64 libbpp-seq-dev:amd64 libbpp-seq12t64:amd64 libbrotli1 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libicu72 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1t64 libncursesw6 libnghttp2-14 libpipeline1 libproc2-0 libpsl5t64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1t64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuv1t64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After this operation, 483 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [956 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7 [14.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.4+20240113-1 [124 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.3-11 [90.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-4 [1392 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.2-2 [321 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.0-2.4 [20.1 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.16+dfsg-2 [173 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.60.0-1 [71.2 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b3 [56.7 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b1 [207 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.7.1-1 [412 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-1.1 [142 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.28.3-1 [2128 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.28.3-1+b1 [8896 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [9273 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-7 [4732 B] Get:49 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.42-4 [2376 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14-20240127-1cross1 [71.7 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14-20240127-1cross1 [128 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14-20240127-1cross1 [25.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14-20240127-1cross1 [8996 B] Get:57 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14-20240127-1cross1 [2716 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14-20240127-1cross1 [1199 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14-20240127-1cross1 [2444 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-12cross1 [1478 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14-20240127-1cross1 [667 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14-20240127-1cross1 [1070 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14-20240127-1cross1 [1434 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14-20240127-1cross1 [146 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-12cross1 [2536 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:67 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-7 [1452 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-12cross1 [1898 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-12cross1 [2210 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:71 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-7 [1204 B] Get:72 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:86 http://mirror.einval.org/debian unstable/main arm64 d-shlibs all 0.106 [10.9 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:94 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1 [188 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.34-1 [28.4 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.34-1 [73.5 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-23 [44.6 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14-20240330-1 [2724 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14-20240330-1 [9216 B] Get:108 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:109 http://mirror.einval.org/debian unstable/main amd64 libbpp-core4t64 amd64 2.4.1-12 [636 kB] Get:110 http://mirror.einval.org/debian unstable/main amd64 libbpp-core-dev amd64 2.4.1-12 [958 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libbpp-seq12t64 amd64 2.4.1-12 [505 kB] Get:112 http://mirror.einval.org/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.1-12 [731 kB] Get:113 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14-20240330-1 [25.8 kB] Get:118 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14-20240330-1 [1201 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14-20240330-1 [2454 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14-20240330-1 [1071 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14-20240330-1 [1485 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:123 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-23 [2537 kB] Get:124 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-23 [2264 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 115 MB in 1s (76.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11948 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.4+20240113-1_arm64.deb ... Unpacking libncursesw6:arm64 (6.4+20240113-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... 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Preparing to unpack .../024-libkrb5support0_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../025-libcom-err2_1.47.0-2.4_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.0-2.4) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../026-libk5crypto3_1.20.1-6+b1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../027-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../028-libkrb5-3_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../029-libgssapi-krb5-2_1.20.1-6+b1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../030-libsasl2-modules-db_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../031-libsasl2-2_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../032-libldap-2.5-0_2.5.16+dfsg-2_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.16+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../033-libnghttp2-14_1.60.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.60.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../034-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../035-librtmp1_2.4+20151223.gitfa8646d.1-2+b3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../036-libssh2-1t64_1.11.0-4.1+b1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-4.1+b1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../037-libcurl4t64_8.7.1-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.7.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../038-libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../039-libjsoncpp25_1.9.5-6+b2_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../040-librhash0_1.4.3-3+b1_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../041-libuv1t64_1.48.0-1.1_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-1.1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../042-cmake-data_3.28.3-1_all.deb ... Unpacking cmake-data (3.28.3-1) ... Selecting previously unselected package cmake. Preparing to unpack .../043-cmake_3.28.3-1+b1_arm64.deb ... Unpacking cmake (3.28.3-1+b1) ... Selecting previously unselected package gcc-13-x86-64-linux-gnu-base:arm64. Preparing to unpack .../044-gcc-13-x86-64-linux-gnu-base_13.2.0-12cross1_arm64.deb ... Unpacking gcc-13-x86-64-linux-gnu-base:arm64 (13.2.0-12cross1) ... Selecting previously unselected package cpp-13-x86-64-linux-gnu. Preparing to unpack .../045-cpp-13-x86-64-linux-gnu_13.2.0-12cross1_arm64.deb ... Unpacking cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../046-cpp-x86-64-linux-gnu_4%3a13.2.0-7_arm64.deb ... Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7) ... Selecting previously unselected package cross-config. Preparing to unpack .../047-cross-config_2.6.20_all.deb ... Unpacking cross-config (2.6.20) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../048-binutils-x86-64-linux-gnu_2.42-4_arm64.deb ... Unpacking binutils-x86-64-linux-gnu (2.42-4) ... Selecting previously unselected package gcc-13-cross-base. Preparing to unpack .../049-gcc-13-cross-base_13.2.0-12cross1_all.deb ... Unpacking gcc-13-cross-base (13.2.0-12cross1) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../050-gcc-14-cross-base_14-20240127-1cross1_all.deb ... Unpacking gcc-14-cross-base (14-20240127-1cross1) ... Selecting previously unselected package libgcc-s1-amd64-cross. Preparing to unpack .../051-libgcc-s1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgcc-s1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libgomp1-amd64-cross. Preparing to unpack .../052-libgomp1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libgomp1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libitm1-amd64-cross. Preparing to unpack .../053-libitm1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libitm1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libatomic1-amd64-cross. Preparing to unpack .../054-libatomic1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libatomic1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libasan8-amd64-cross. Preparing to unpack .../055-libasan8-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libasan8-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package liblsan0-amd64-cross. Preparing to unpack .../056-liblsan0-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking liblsan0-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libtsan2-amd64-cross. Preparing to unpack .../057-libtsan2-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libtsan2-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libc6-amd64-cross. Preparing to unpack .../058-libc6-amd64-cross_2.37-12cross1_all.deb ... Unpacking libc6-amd64-cross (2.37-12cross1) ... Selecting previously unselected package libstdc++6-amd64-cross. Preparing to unpack .../059-libstdc++6-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libstdc++6-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libubsan1-amd64-cross. Preparing to unpack .../060-libubsan1-amd64-cross_14-20240127-1cross1_all.deb ... Unpacking libubsan1-amd64-cross (14-20240127-1cross1) ... Selecting previously unselected package libhwasan0-amd64-cross. 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Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up binutils-x86-64-linux-gnu (2.42-4) ... Setting up libstdc++6-amd64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up libasan8-amd64-cross (14-20240127-1cross1) ... Setting up liblsan0-amd64-cross (14-20240127-1cross1) ... Setting up libc6-dev-amd64-cross (2.37-12cross1) ... Setting up libtsan2-amd64-cross (14-20240127-1cross1) ... Setting up libldap-2.5-0:arm64 (2.5.16+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libhwasan0-amd64-cross (14-20240127-1cross1) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libubsan1-amd64-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libarchive13t64:arm64 (3.7.2-2) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libcurl4t64:arm64 (8.7.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up cmake (3.28.3-1+b1) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (14-20240330-1) ... Setting up libc6:amd64 (2.37-15.1) ... Setting up libhwasan0:amd64 (14-20240330-1) ... Setting up libasan8:amd64 (14-20240330-1) ... Setting up libtsan2:amd64 (14-20240330-1) ... Setting up libstdc++6:amd64 (14-20240330-1) ... Setting up liblsan0:amd64 (14-20240330-1) ... Setting up libitm1:amd64 (14-20240330-1) ... Setting up libbpp-core4t64:amd64 (2.4.1-12) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... Setting up libgomp1:amd64 (14-20240330-1) ... Setting up libbpp-core-dev:amd64 (2.4.1-12) ... Setting up libquadmath0:amd64 (14-20240330-1) ... Setting up libatomic1:amd64 (14-20240330-1) ... Setting up libubsan1:amd64 (14-20240330-1) ... Setting up libgcc-13-dev:amd64 (13.2.0-23) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libc6-dev:amd64 (2.37-15.1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-23) ... Setting up libbpp-seq12t64:amd64 (2.4.1-12) ... Setting up libbpp-seq-dev:amd64 (2.4.1-12) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-amd64-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-amd64-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-4 binutils-aarch64-linux-gnu_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.39.3-11 bsdutils_1:2.39.3-11 build-essential_12.10 bzip2_1.0.8-5.1 cmake_3.28.3-1+b1 cmake-data_3.28.3-1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-23 cpp-13-aarch64-linux-gnu_13.2.0-23 cpp-13-x86-64-linux-gnu_13.2.0-12cross1 cpp-aarch64-linux-gnu_4:13.2.0-7 cpp-x86-64-linux-gnu_4:13.2.0-7 cross-config_2.6.20 crossbuild-essential-amd64_12.10 d-shlibs_0.106 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6 dpkg-cross_2.6.20 dpkg-dev_1.22.6 dwz_0.15-1+b1 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-5 g++_4:13.2.0-7 g++-13_13.2.0-23 g++-13-aarch64-linux-gnu_13.2.0-23 g++-13-x86-64-linux-gnu_13.2.0-12cross1 g++-aarch64-linux-gnu_4:13.2.0-7 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-23 gcc-13-aarch64-linux-gnu_13.2.0-23 gcc-13-base_13.2.0-23 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Architecture: any Version: 2.4.1-10 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-popgen Vcs-Git: https://salsa.debian.org/med-team/libbpp-popgen.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-core-dev, libbpp-seq-dev Package-List: libbpp-popgen-dev deb libdevel optional arch=any libbpp-popgen8t64 deb libs optional arch=any Checksums-Sha1: 87cd4dfa9e51b37af0bfde87b4762464a4cc49ae 116874 libbpp-popgen_2.4.1.orig.tar.gz a168abaecf4e8d2ea9e3bdf49f95b302da35bf20 23328 libbpp-popgen_2.4.1-10.debian.tar.xz Checksums-Sha256: 03b57d71a63c8fa7f11c085e531d0d691fc1d40d4ea541070dabde0ab3baf413 116874 libbpp-popgen_2.4.1.orig.tar.gz f8e6090e49fe3c260b9c56f9f7eb0342f165883fe659192f3c553163b03e1a01 23328 libbpp-popgen_2.4.1-10.debian.tar.xz Files: cdc84495e251b6ff4260385adecbea28 116874 libbpp-popgen_2.4.1.orig.tar.gz 94eee15be76aba5dcb6d0b6b40fa5280 23328 libbpp-popgen_2.4.1-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYBus0ACgkQPCZ2P2xn 5uJqDQ/9Htd5jQdLs2qY5we9ousbXblnTSzfED0x/nBJCRvBx6Kaid43Od7YUZBL WL/VyK2x4bYNrIfRRb/lNZfvdBhLlkoy8i/U/OHoOfMqU0BVLO4qRHAh4HT73KRQ QxSVBA9ND7QeWvmeLVvJ2LQsNKVx65f5XjK6gVwN5vpod7FSoyyLJAh3mbY1diYt MS14QuZREQZcSsapT2H9SF3UO6u5EDG+JUNWfmE0Fl9bsnpXRRhRQhH24/adW0KH qAgizTzcJhbQQnYZ+8J4xvEtZnTqMLK5mqqZoHeIJOeQ5fXOmpIh1dQrq/q0Zmgj /0VapZX/ehwmyg63nU7DuJ1CcRGw1PBV2YjkneH+BMHY8KN33QBVbVtDt6Pz6jmK tQVzN5Gjv2NkhPa2mMZHdDQuDQ2ebJ7sh88nUDGOiL9qPZxcbwHwEiAq0sbTxCPB zqW17jIksAUWLGt6r+UDpVQdaHF4GUZlXH2XHc2ZcyCOmlQflEW26h2hTKp8TBvy Fzb+b47YQdi6InQtrtQKD2KUeYJaeAiAaLPGe7hEibbPWbDTcnLUX3vTbB9kpjSg pnvnZnQgexu/VhR4Hg5BIZe+nbgsVLFPmcufNPWYkn6Klr3rjFzXu+d4E2ztY/0y VU5z82nzuMLQuNLqTJ0eKG4nso5JFYg+8bK8XyGr0XtEfXcFZas= =lwKQ -----END PGP SIGNATURE----- gpgv: Signature made Mon Mar 25 17:56:29 2024 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-popgen_2.4.1-10.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-popgen in /<> dpkg-source: info: unpacking libbpp-popgen_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-popgen_2.4.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unforce-cxxflags.patch dpkg-source: info: applying spelling Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libbpp-popgen dpkg-buildpackage: info: source version 2.4.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BUILD_TESTING CMAKE_C_COMPILER CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-static.dir/build.make src/CMakeFiles/bpp-popgen-static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<>/src/Bpp/PopGen/BasicAlleleInfo.cpp [ 3%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSet.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Group.cpp [ 14%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Individual.cpp [ 16%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp [ 17%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 19%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 20%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp [ 22%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp [ 24%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp [ 27%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<>/src/Bpp/PopGen/GeneralExceptions.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<>/src/Bpp/PopGen/LocusInfo.cpp [ 33%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 37%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 38%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotype.cpp [ 40%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<>/src/Bpp/PopGen/SequenceStatistics.cpp [ 50%] Linking CXX static library libbpp-popgen.a cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-popgen-static.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libbpp-popgen.a "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-static.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/bin/x86_64-linux-gnu-ranlib libbpp-popgen.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target bpp-popgen-static make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-popgen-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-popgen-shared.dir/build.make src/CMakeFiles/bpp-popgen-shared.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o -c /<>/src/Bpp/PopGen/BasicAlleleInfo.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedLoci.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o -c /<>/src/Bpp/PopGen/DataSet/AnalyzedSequences.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSet.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o -c /<>/src/Bpp/PopGen/DataSet/DataSetTools.cpp [ 61%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Date.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Group.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Individual.cpp [ 66%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp [ 72%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp [ 77%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o -c /<>/src/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o -c /<>/src/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o -c /<>/src/Bpp/PopGen/GeneralExceptions.cpp [ 82%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o -c /<>/src/Bpp/PopGen/LocusInfo.cpp [ 83%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o -c /<>/src/Bpp/PopGen/MonolocusGenotypeTools.cpp [ 87%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp [ 88%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotype.cpp [ 90%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o -c /<>/src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp [ 91%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainer.cpp [ 93%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainer.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o -c /<>/src/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -Dbpp_popgen_shared_EXPORTS -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -MF CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o.d -o CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o -c /<>/src/Bpp/PopGen/SequenceStatistics.cpp [100%] Linking CXX shared library libbpp-popgen.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-popgen-shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-popgen.so.8 -o libbpp-popgen.so.8.0.0 "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BasicAlleleInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/BiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedLoci.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/AnalyzedSequences.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/DataSetTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Date.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Group.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Individual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractIDataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/AbstractODataSet.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genepop/Genepop.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/Genetix/Genetix.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/Io/PopgenlibIO.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/DataSet/MultiSeqIndividual.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/GeneralExceptions.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/LocusInfo.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonoAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MonolocusGenotypeTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultiAlleleMonolocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotype.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/MultilocusGenotypeStatistics.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismMultiGContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainer.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/PolymorphismSequenceContainerTools.cpp.o" "CMakeFiles/bpp-popgen-shared.dir/Bpp/PopGen/SequenceStatistics.cpp.o" /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-popgen.so.8.0.0 libbpp-popgen.so.8 libbpp-popgen.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bpp-popgen-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainer.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotypeStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultilocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/LocusInfo.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/SequenceStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismSequenceContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/PolymorphismMultiGContainerTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MultiAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotypeTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/MonoAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/GeneralExceptions.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Individual.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Group.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/MultiSeqIndividual.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Locality.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/PopgenlibIO.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/ODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/IDataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genetix/Genetix.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Genepop/Genepop.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/GeneMapper/GeneMapperCsvExport.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinVarSingle.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/Darwin/DarwinDon.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractODataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Io/AbstractIDataSet.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/Date.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/DataSetTools.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedSequences.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/DataSet/AnalyzedLoci.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/BiAlleleMonolocusGenotype.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/BasicAlleleInfo.h -- Installing: /<>/debian/tmp/usr/include/Bpp/PopGen/AlleleInfo.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-popgen/bpp-popgen-targets-none.cmake make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 debian/libbpp-popgen8t64/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-popgen-dev PKGSHL=libbpp-popgen8t64 install -d -m 755 debian/libbpp-popgen-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-popgen8t64/DEBIAN/symbols doesn't match completely debian/libbpp-popgen8t64.symbols.amd64 --- debian/libbpp-popgen8t64.symbols.amd64 (libbpp-popgen8t64_2.4.1-10_amd64) +++ dpkg-gensymbols9aSl63 2024-04-02 07:16:08.859562476 +0000 @@ -971,7 +971,7 @@ _ZNSt6vectorISt3setINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS6_ESaIS6_EESaISA_EE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorISt3setINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS6_ESaIS6_EESaISA_EED1Ev@Base 2.4.1 _ZNSt6vectorISt3setINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS6_ESaIS6_EESaISA_EED2Ev@Base 2.4.1 - _ZNSt6vectorIbSaIbEE13_M_insert_auxESt13_Bit_iteratorb@Base 2.4.1-10~ +#MISSING: 2.4.1-10# _ZNSt6vectorIbSaIbEE13_M_insert_auxESt13_Bit_iteratorb@Base 2.4.1-10~ _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 2.4.1 _ZNSt6vectorIdSaIdEE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 2.4.1 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:8: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-04-02T07:16:08Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 112472 Build-Time: 458 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 54 Job: libbpp-popgen_2.4.1-10 Machine Architecture: arm64 Package: libbpp-popgen Package-Time: 553 Source-Version: 2.4.1-10 Space: 112472 Status: attempted Version: 2.4.1-10 -------------------------------------------------------------------------------- Finished at 2024-04-02T07:16:08Z Build needed 00:09:13, 112472k disk space