sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | libgff 2.0.0-3 (armel) Thu, 20 Oct 2022 20:03:06 +0000 | +==============================================================================+ Package: libgff Version: 2.0.0-3 Source Version: 2.0.0-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-e0085ddf-5460-4b10-af17-83c35debf2e7' with '<>' I: NOTICE: Log filtering will replace 'build/libgff-isGJgz/resolver-lDrpML' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-20-1405.15-F-2022-10-20-0203.06.pdiff [25.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-20-1405.15-F-2022-10-20-0203.06.pdiff [86.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-10-20-1405.15-F-2022-10-20-0203.06.pdiff [25.4 kB] Get:6 http://localhost:3142/debian sid/main armel Packages [8969 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-10-20-1405.15-F-2022-10-20-0203.06.pdiff [86.8 kB] Fetched 9369 kB in 3s (3662 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gpgv libffi8 libgpg-error0 liblzma5 xz-utils 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1261 kB of archives. After this operation, 435 kB of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB] Get:2 http://localhost:3142/debian sid/main amd64 gpgv amd64 2.2.40-1 [648 kB] Get:3 http://localhost:3142/debian sid/main amd64 libffi8 amd64 3.4.3-3 [22.8 kB] Get:4 http://localhost:3142/debian sid/main amd64 liblzma5 amd64 5.2.7-0.0 [181 kB] Get:5 http://localhost:3142/debian sid/main amd64 xz-utils amd64 5.2.7-0.0 [332 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1261 kB in 0s (98.4 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgff' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgff.git Please use: git clone https://salsa.debian.org/med-team/libgff.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://localhost:3142/debian sid/main libgff 2.0.0-3 (dsc) [2028 B] Get:2 http://localhost:3142/debian sid/main libgff 2.0.0-3 (tar) [102 kB] Get:3 http://localhost:3142/debian sid/main libgff 2.0.0-3 (diff) [4272 B] Fetched 108 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgff-isGJgz/libgff-2.0.0' with '<>' I: NOTICE: Log filtering will replace 'build/libgff-isGJgz' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), cmake, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [410 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1865 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu71 libio-string-perl libjsoncpp25 libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev:armel libnsl2:armel libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf procps sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build cmake-format gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel krb5-doc:armel krb5-user:armel libstdc++-11-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armel ca-certificates libarchive-cpio-perl krb5-locales:armel libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dpkg-cross dwz emacsen-common file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu71 libio-string-perl libjsoncpp25 libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev:armel libnsl2:armel libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl3:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf procps sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 96.9 MB of archives. After this operation, 382 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncurses6 amd64 6.3+20220423-2 [102 kB] Get:4 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:5 http://localhost:3142/debian sid/main amd64 libprocps8 amd64 2:3.3.17-7+b1 [64.2 kB] Get:6 http://localhost:3142/debian sid/main amd64 procps amd64 2:3.3.17-7+b1 [502 kB] Get:7 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:9 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:10 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:11 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:12 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:13 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:14 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1.1+b1 [85.9 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-3 [39.4 kB] Get:16 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.0-1+b1 [1342 kB] Get:17 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:19 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:20 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:23 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.39-8 [3232 kB] Get:24 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:25 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:26 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.0-1 [350 kB] Get:27 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b4 [275 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-8 [38.7 kB] Get:29 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-8 [78.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:31 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.50.0-1+b1 [73.1 kB] Get:32 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:33 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:34 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:35 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.85.0-1 [367 kB] Get:36 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.4.9-1 [105 kB] Get:37 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:39 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:40 http://localhost:3142/debian sid/main amd64 dh-elpa-helper all 2.0.14 [11.5 kB] Get:41 http://localhost:3142/debian sid/main amd64 emacsen-common all 3.0.4 [19.3 kB] Get:42 http://localhost:3142/debian sid/main amd64 cmake-data all 3.24.2-2 [2002 kB] Get:43 http://localhost:3142/debian sid/main amd64 cmake amd64 3.24.2-2 [8405 kB] Get:44 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi-base amd64 12.2.0-3cross2 [208 kB] Get:45 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabi amd64 12.2.0-3cross2 [8665 kB] Get:46 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:12.2.0-1 [17.2 kB] Get:47 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:48 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-3cross2 [204 kB] Get:49 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.35-1cross1 [1092 kB] Get:50 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 12.2.0-3cross2 [38.6 kB] Get:51 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 12.2.0-3cross2 [96.8 kB] Get:52 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 12.2.0-3cross2 [8908 B] Get:53 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 12.2.0-3cross2 [2092 kB] Get:54 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 12.2.0-3cross2 [464 kB] Get:55 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 12.2.0-3cross2 [862 kB] Get:56 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armel-cross all 12.2.0-3cross2 [736 kB] Get:57 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi amd64 12.2.0-3cross2 [17.0 MB] Get:58 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:12.2.0-1 [1452 B] Get:59 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 5.19.6-1cross1 [1718 kB] Get:60 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.35-1cross1 [1478 kB] Get:61 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armel-cross all 12.2.0-3cross2 [2033 kB] Get:62 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabi amd64 12.2.0-3cross2 [9594 kB] Get:63 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:12.2.0-1 [1176 B] Get:64 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:71 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:72 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:73 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:76 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:78 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.10 [79.8 kB] Get:79 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:80 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:82 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:83 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:84 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:85 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-4 [179 kB] Get:86 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:87 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:88 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:90 http://localhost:3142/debian sid/main amd64 debhelper all 13.10 [940 kB] Get:91 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.3.0-8 [209 kB] Get:92 http://localhost:3142/debian sid/main armel gcc-12-base armel 12.2.0-5 [208 kB] Get:93 http://localhost:3142/debian sid/main armel libgcc-s1 armel 12.2.0-5 [38.5 kB] Get:94 http://localhost:3142/debian sid/main armel libc6 armel 2.35-3 [2189 kB] Get:95 http://localhost:3142/debian sid/main armel libasan6 armel 11.3.0-8 [1945 kB] Get:96 http://localhost:3142/debian sid/main armel libatomic1 armel 12.2.0-5 [9164 B] Get:97 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.0.2-1 [1613 kB] Get:98 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.28-2 [97.6 kB] Get:99 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.28-2 [127 kB] Get:100 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.46.6~rc1-1+b1 [14.2 kB] Get:101 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20-1+b1 [29.2 kB] Get:102 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20-1+b1 [73.9 kB] Get:103 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-1 [14.8 kB] Get:104 http://localhost:3142/debian sid/main armel libssl3 armel 3.0.5-4 [1642 kB] Get:105 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20-1+b1 [284 kB] Get:106 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20-1+b1 [109 kB] Get:107 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.3+ds-1 [72.0 kB] Get:108 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:109 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.3+ds-1 [182 kB] Get:110 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:111 http://localhost:3142/debian sid/main armel libc6-dev armel 2.35-3 [1278 kB] Get:112 http://localhost:3142/debian sid/main armel libgomp1 armel 12.2.0-5 [99.6 kB] Get:113 http://localhost:3142/debian sid/main armel libstdc++6 armel 12.2.0-5 [507 kB] Get:114 http://localhost:3142/debian sid/main armel libubsan1 armel 12.2.0-5 [863 kB] Get:115 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.3.0-8 [702 kB] Get:116 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.3.0-8 [1974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.9 MB in 1s (186 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15686 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.3+20220423-2_amd64.deb ... Unpacking libncurses6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../002-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-7+b1_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-7+b1) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-7+b1_amd64.deb ... Unpacking procps (2:3.3.17-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... 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Unpacking libgcc-11-dev:armel (11.3.0-8) ... Selecting previously unselected package libstdc++-11-dev:armel. Preparing to unpack .../114-libstdc++-11-dev_11.3.0-8_armel.deb ... Unpacking libstdc++-11-dev:armel (11.3.0-8) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../115-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libexpat1:amd64 (2.4.9-1) ... Setting up libpipeline1:amd64 (1.5.6-3) ... Setting up libicu71:amd64 (71.1-3) ... Setting up gcc-11-base:armel (11.3.0-8) ... Setting up libfile-which-perl (1.27-2) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up binutils-arm-linux-gnueabi (2.39-8) ... Setting up gcc-12-cross-base (12.2.0-3cross2) ... Setting up bsdextrautils (2.38.1-1.1+b1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10) ... Setting up libbrotli1:amd64 (1.0.9-2+b4) ... Setting up libnghttp2-14:amd64 (1.50.0-1+b1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:armel (6.0.2-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-2) ... Setting up linux-libc-dev-armel-cross (5.19.6-1cross1) ... Setting up gcc-12-base:armel (12.2.0-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-8) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up dh-elpa-helper (2.0.14) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up autopoint (0.21-9) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-8) ... Setting up autoconf (2.71-2) ... Setting up libc6-armel-cross (2.35-1cross1) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-3cross2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.24.2-2) ... Setting up libc6-dev-armel-cross (2.35-1cross1) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libelf1:amd64 (0.187-4) ... Setting up cpp-12-arm-linux-gnueabi (12.2.0-3cross2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b3) ... Setting up libprocps8:amd64 (2:3.3.17-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-9) ... Setting up libgomp1-armel-cross (12.2.0-3cross2) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:amd64 (3.6.0-1) ... Setting up libgcc-s1-armel-cross (12.2.0-3cross2) ... Setting up libstdc++6-armel-cross (12.2.0-3cross2) ... Setting up libatomic1-armel-cross (12.2.0-3cross2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-arm-linux-gnueabi (4:12.2.0-1) ... Setting up libubsan1-armel-cross (12.2.0-3cross2) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8) ... Setting up procps (2:3.3.17-7+b1) ... Setting up libcurl4:amd64 (7.85.0-1) ... Setting up libasan8-armel-cross (12.2.0-3cross2) ... Setting up libgcc-12-dev-armel-cross (12.2.0-3cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.0-1+b1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up gcc-12-arm-linux-gnueabi (12.2.0-3cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / grep: warning: stray \ before / Setting up gcc-arm-linux-gnueabi (4:12.2.0-1) ... Setting up cmake (3.24.2-2) ... Setting up libstdc++-12-dev-armel-cross (12.2.0-3cross2) ... Setting up debhelper (13.10) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-arm-linux-gnueabi (12.2.0-3cross2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-arm-linux-gnueabi (4:12.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (12.2.0-5) ... Setting up libc6:armel (2.35-3) ... Setting up libstdc++6:armel (12.2.0-5) ... Setting up libkeyutils1:armel (1.6.3-1) ... Setting up libcrypt1:armel (1:4.4.28-2) ... Setting up libcom-err2:armel (1.46.6~rc1-1+b1) ... Setting up libgomp1:armel (12.2.0-5) ... Setting up libasan6:armel (11.3.0-8) ... Setting up libkrb5support0:armel (1.20-1+b1) ... Setting up libatomic1:armel (12.2.0-5) ... Setting up libk5crypto3:armel (1.20-1+b1) ... Setting up libubsan1:armel (12.2.0-5) ... Setting up libgcc-11-dev:armel (11.3.0-8) ... Setting up libcrypt-dev:armel (1:4.4.28-2) ... Setting up libssl3:armel (3.0.5-4) ... Setting up libkrb5-3:armel (1.20-1+b1) ... Setting up libgssapi-krb5-2:armel (1.20-1+b1) ... Setting up libtirpc3:armel (1.3.3+ds-1) ... Setting up libtirpc-dev:armel (1.3.3+ds-1) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.35-3) ... Setting up libstdc++-11-dev:armel (11.3.0-8) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.35-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-18-amd64 #1 SMP Debian 5.10.140-1 (2022-09-02) amd64 (x86_64) Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.9 g++-11_11.3.0-8 g++-12_12.2.0-5 gcc-11_11.3.0-8 gcc-12_12.2.0-5 libc6-dev_2.35-3 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-armel-cross_12.2.0-3cross2 libstdc++6_12.2.0-5 libstdc++6-armel-cross_12.2.0-3cross2 linux-libc-dev_6.0.2-1 Package versions: adduser_3.129 apt_2.5.3+b1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-1 binutils_2.39-8 binutils-arm-linux-gnueabi_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-1.1+b1 bsdutils_1:2.38.1-1.1+b1 build-essential_12.9 bzip2_1.0.8-5+b1 cmake_3.24.2-2 cmake-data_3.24.2-2 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-5 cpp-12-arm-linux-gnueabi_12.2.0-3cross2 cpp-arm-linux-gnueabi_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-elpa-helper_2.0.14 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9+b1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-5 g++-12-arm-linux-gnueabi_12.2.0-3cross2 g++-arm-linux-gnueabi_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-5 gcc-12-arm-linux-gnueabi_12.2.0-3cross2 gcc-12-arm-linux-gnueabi-base_12.2.0-3cross2 gcc-12-base_12.2.0-5 gcc-12-cross-base_12.2.0-3cross2 gcc-9-base_9.5.0-2+b1 gcc-arm-linux-gnueabi_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.40-1 grep_3.8-2 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3+b1 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan6_11.3.0-8 libasan8_12.2.0-5 libasan8-armel-cross_12.2.0-3cross2 libatomic1_12.2.0-5 libatomic1-armel-cross_12.2.0-3cross2 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b1 libbinutils_2.39-8 libblkid1_2.38.1-1.1+b1 libbrotli1_1.0.9-2+b4 libbz2-1.0_1.0.8-5+b1 libc-bin_2.35-3 libc-dev-bin_2.35-3 libc6_2.35-3 libc6-armel-cross_2.35-1cross1 libc6-dev_2.35-3 libc6-dev-armel-cross_2.35-1cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-5 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-8 libctf0_2.39-8 libcurl4_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.9 libelf1_0.187-4 libexpat1_2.4.9-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.29-1 libffi8_3.4.3-3 libfile-find-rule-perl_0.34-2 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-5 libgcc-12-dev-armel-cross_12.2.0-3cross2 libgcc-s1_12.2.0-5 libgcc-s1-armel-cross_12.2.0-3cross2 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-5 libgomp1-armel-cross_12.2.0-3cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20-1+b1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-5 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1+b1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1+b1 libkrb5support0_1.20-1+b1 libldap-2.5-0_2.5.13+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-5 liblz4-1_1.9.4-1 liblzma5_5.2.7-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1+b1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1+b1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libprocps8_2:3.3.17-7+b1 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-5 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1+b1 libss2_1.46.6~rc1-1+b1 libssh2-1_1.10.0-3+b1 libssl3_3.0.5-4 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-5 libstdc++-12-dev-armel-cross_12.2.0-3cross2 libstdc++6_12.2.0-5 libstdc++6-armel-cross_12.2.0-3cross2 libsub-override-perl_0.09-4 libsystemd0_251.6-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-8 libtsan2_12.2.0-5 libubsan1_12.2.0-5 libubsan1-armel-cross_12.2.0-3cross2 libuchardet0_0.0.7-1 libudev1_251.6-1 libunistring2_1.0-2 libuuid1_2.38.1-1.1+b1 libuv1_1.44.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.2-1 linux-libc-dev-armel-cross_5.19.6-1cross1 login_1:4.12.3+dfsg1-1 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Michael R. Crusoe Homepage: https://github.com/COMBINE-lab/libgff Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libgff Vcs-Git: https://salsa.debian.org/med-team/libgff.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python-pysam-tests Build-Depends: debhelper-compat (= 13), cmake, debhelper Package-List: libgff-dev deb libdevel optional arch=any Checksums-Sha1: 6127e9f35dee7fc254a1ed280ff5337d42d814ba 102152 libgff_2.0.0.orig.tar.gz 0395c0f92eb407fe62dd62b345429e2f90972d84 4272 libgff_2.0.0-3.debian.tar.xz Checksums-Sha256: 7656b19459a7ca7d2fd0fcec4f2e0fd0deec1b4f39c703a114e8f4c22d82a99c 102152 libgff_2.0.0.orig.tar.gz 095e505f9fa1f984ed38dc5aef405f2f1346a853f2c7e7511e7b790e3da457f2 4272 libgff_2.0.0-3.debian.tar.xz Files: 2154f6c0a4ea49cea86205d9a737be84 102152 libgff_2.0.0.orig.tar.gz 310111f6fac08140c987b75f43ff8982 4272 libgff_2.0.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHq00MRHHRpbGxlQGRl 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F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libgff_2.0.0-3.dsc dpkg-source: info: extracting libgff in /<> dpkg-source: info: unpacking libgff_2.0.0.orig.tar.gz dpkg-source: info: unpacking libgff_2.0.0-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-e0085ddf-5460-4b10-af17-83c35debf2e7 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libgff dpkg-buildpackage: info: source version 2.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-arm-linux-gnueabi && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=armv7l -DCMAKE_C_COMPILER=arm-linux-gnueabi-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabi-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabi-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Install prefix : /usr version: 2.0.0 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabi dh_auto_build -a cd obj-arm-linux-gnueabi && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles /<>/obj-arm-linux-gnueabi//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/gff.dir/build.make CMakeFiles/gff.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/gff.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/gff.dir/build.make CMakeFiles/gff.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 9%] Building CXX object CMakeFiles/gff.dir/src/codons.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/codons.cpp.o -MF CMakeFiles/gff.dir/src/codons.cpp.o.d -o CMakeFiles/gff.dir/src/codons.cpp.o -c /<>/src/codons.cpp [ 18%] Building CXX object CMakeFiles/gff.dir/src/GArgs.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GArgs.cpp.o -MF CMakeFiles/gff.dir/src/GArgs.cpp.o.d -o CMakeFiles/gff.dir/src/GArgs.cpp.o -c /<>/src/GArgs.cpp [ 27%] Building CXX object CMakeFiles/gff.dir/src/GBase.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GBase.cpp.o -MF CMakeFiles/gff.dir/src/GBase.cpp.o.d -o CMakeFiles/gff.dir/src/GBase.cpp.o -c /<>/src/GBase.cpp [ 36%] Building CXX object CMakeFiles/gff.dir/src/gdna.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/gdna.cpp.o -MF CMakeFiles/gff.dir/src/gdna.cpp.o.d -o CMakeFiles/gff.dir/src/gdna.cpp.o -c /<>/src/gdna.cpp [ 45%] Building CXX object CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o -MF CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o.d -o CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o -c /<>/src/GFaSeqGet.cpp [ 54%] Building CXX object CMakeFiles/gff.dir/src/GFastaIndex.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GFastaIndex.cpp.o -MF CMakeFiles/gff.dir/src/GFastaIndex.cpp.o.d -o CMakeFiles/gff.dir/src/GFastaIndex.cpp.o -c /<>/src/GFastaIndex.cpp [ 63%] Building CXX object CMakeFiles/gff.dir/src/gff.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/gff.cpp.o -MF CMakeFiles/gff.dir/src/gff.cpp.o.d -o CMakeFiles/gff.dir/src/gff.cpp.o -c /<>/src/gff.cpp In file included from /<>/include/GList.hh:8, from /<>/include/GFastaIndex.h:12, from /<>/include/GFaSeqGet.h:3, from /<>/include/gff.h:9, from /<>/src/gff.cpp:1: /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GMapSeg]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GMapSeg]’ /<>/include/gff.h:126:50: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GMapSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:69:7: note: ‘class GMapSeg’ declared here 69 | class GMapSeg:public GSeg { | ^~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSeg]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSeg]’ /<>/include/gff.h:310:4: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/gff.h:6: /<>/include/GBase.h:308:7: note: ‘class GSeg’ declared here 308 | class GSeg { | ^~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GeneCDS]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GeneCDS]’ /<>/include/gff.h:1349:17: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GeneCDS’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1338:7: note: ‘class GeneCDS’ declared here 1338 | class GeneCDS: public GSeg { | ^~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GffExon]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GffExon]’ /<>/src/gff.cpp:2315:16: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GffExon’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:627:7: note: ‘class GffExon’ declared here 627 | class GffExon : public GSeg { | ^~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSegMatch]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSegMatch]’ /<>/include/GList.hh:191:76: required from ‘GArray::GArray(int (*)(pointer, pointer)) [with OBJ = GSegMatch; GCompareProc = int(void*, void*)]’ /<>/include/gff.h:1349:27: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1326:7: note: ‘class GSegMatch’ declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::Grow(int, OBJ&) [with OBJ = GSegMatch]’: /<>/include/GVec.hh:437:9: required from ‘void GVec::Insert(int, OBJ*) [with OBJ = GSegMatch]’ /<>/include/GVec.hh:69:44: required from ‘void GVec::Insert(int, OBJ) [with OBJ = GSegMatch]’ /<>/include/GList.hh:234:21: required from ‘int GArray::Add(OBJ*) [with OBJ = GSegMatch]’ /<>/include/GList.hh:51:36: required from ‘int GArray::Add(OBJ&) [with OBJ = GSegMatch]’ /<>/include/gff.h:1362:13: required from here /<>/include/GVec.hh:358:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1326:7: note: ‘class GSegMatch’ declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ [ 72%] Building CXX object CMakeFiles/gff.dir/src/GStr.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GStr.cpp.o -MF CMakeFiles/gff.dir/src/GStr.cpp.o.d -o CMakeFiles/gff.dir/src/GStr.cpp.o -c /<>/src/GStr.cpp /<>/src/GStr.cpp: In function ‘void GStr::prep_data(uint, uint)’: /<>/src/GStr.cpp:57:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~~^~ In file included from /<>/src/GStr.cpp:2: /<>/include/GStr.h:184:21: note: at offset 1 into destination object ‘GStr::Data::chars’ of size 1 184 | char chars[1]; | ^~~~~ In member function ‘void GStr::prep_data(uint, uint)’, inlined from ‘GStr::GStr(char, int)’ at /<>/src/GStr.cpp:193:12: /<>/src/GStr.cpp:57:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~~^~ /<>/include/GStr.h: In constructor ‘GStr::GStr(char, int)’: /<>/include/GStr.h:184:21: note: at offset 1 into destination object ‘GStr::Data::chars’ of size 1 184 | char chars[1]; | ^~~~~ In member function ‘void GStr::prep_data(uint, uint)’, inlined from ‘GStr GStr::operator+(int) const’ at /<>/src/GStr.cpp:666:24: /<>/src/GStr.cpp:57:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~~^~ /<>/include/GStr.h: In member function ‘GStr GStr::operator+(int) const’: /<>/include/GStr.h:184:21: note: at offset 1 into destination object ‘GStr::Data::chars’ of size 1 184 | char chars[1]; | ^~~~~ In member function ‘void GStr::prep_data(uint, uint)’, inlined from ‘GStr GStr::operator+(char) const’ at /<>/src/GStr.cpp:677:24: /<>/src/GStr.cpp:57:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~~^~ /<>/include/GStr.h: In member function ‘GStr GStr::operator+(char) const’: /<>/include/GStr.h:184:21: note: at offset 1 into destination object ‘GStr::Data::chars’ of size 1 184 | char chars[1]; | ^~~~~ In member function ‘void GStr::prep_data(uint, uint)’, inlined from ‘GStr GStr::operator+(double) const’ at /<>/src/GStr.cpp:688:24: /<>/src/GStr.cpp:57:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~~^~ /<>/include/GStr.h: In member function ‘GStr GStr::operator+(double) const’: /<>/include/GStr.h:184:21: note: at offset 1 into destination object ‘GStr::Data::chars’ of size 1 184 | char chars[1]; | ^~~~~ [ 81%] Linking CXX static library libgff.a /usr/bin/cmake -P CMakeFiles/gff.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/gff.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-ar qc libgff.a CMakeFiles/gff.dir/src/codons.cpp.o CMakeFiles/gff.dir/src/GArgs.cpp.o CMakeFiles/gff.dir/src/GBase.cpp.o CMakeFiles/gff.dir/src/gdna.cpp.o CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o CMakeFiles/gff.dir/src/GFastaIndex.cpp.o CMakeFiles/gff.dir/src/gff.cpp.o CMakeFiles/gff.dir/src/GStr.cpp.o /usr/bin/arm-linux-gnueabi-ranlib libgff.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 81%] Built target gff make -f CMakeFiles/TestGFFParse.dir/build.make CMakeFiles/TestGFFParse.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/TestGFFParse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/TestGFFParse.dir/build.make CMakeFiles/TestGFFParse.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 90%] Building CXX object CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o /usr/bin/arm-linux-gnueabi-g++ -I/<>/include -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -MF CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o.d -o CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -c /<>/src/TestGFFParse.cpp /<>/src/TestGFFParse.cpp: In function ‘int main(int, char**)’: /<>/src/TestGFFParse.cpp:25:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 25 | for (size_t j=0; j < f->attrs->Count(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/GList.hh:8, from /<>/include/GFastaIndex.h:12, from /<>/include/GFaSeqGet.h:3, from /<>/include/gff.h:9, from /<>/src/TestGFFParse.cpp:5: /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GMapSeg]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GMapSeg]’ /<>/include/gff.h:126:50: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GMapSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:69:7: note: ‘class GMapSeg’ declared here 69 | class GMapSeg:public GSeg { | ^~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSeg]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSeg]’ /<>/include/gff.h:310:4: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSeg’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/gff.h:6: /<>/include/GBase.h:308:7: note: ‘class GSeg’ declared here 308 | class GSeg { | ^~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GeneCDS]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GeneCDS]’ /<>/include/gff.h:1349:17: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GeneCDS’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1338:7: note: ‘class GeneCDS’ declared here 1338 | class GeneCDS: public GSeg { | ^~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::setCapacity(int) [with OBJ = GSegMatch]’: /<>/include/GVec.hh:202:3: required from ‘GVec::GVec(int) [with OBJ = GSegMatch]’ /<>/include/GList.hh:191:76: required from ‘GArray::GArray(int (*)(pointer, pointer)) [with OBJ = GSegMatch; GCompareProc = int(void*, void*)]’ /<>/include/gff.h:1349:27: required from here /<>/include/GVec.hh:291:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1326:7: note: ‘class GSegMatch’ declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ /<>/include/GVec.hh: In instantiation of ‘void GVec::Grow(int, OBJ&) [with OBJ = GSegMatch]’: /<>/include/GVec.hh:437:9: required from ‘void GVec::Insert(int, OBJ*) [with OBJ = GSegMatch]’ /<>/include/GVec.hh:69:44: required from ‘void GVec::Insert(int, OBJ) [with OBJ = GSegMatch]’ /<>/include/GList.hh:234:21: required from ‘int GArray::Add(OBJ*) [with OBJ = GSegMatch]’ /<>/include/GList.hh:51:36: required from ‘int GArray::Add(OBJ&) [with OBJ = GSegMatch]’ /<>/include/gff.h:1362:13: required from here /<>/include/GVec.hh:358:15: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class GSegMatch’; use assignment or value-initialization instead [-Wclass-memaccess] 358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/gff.h:1326:7: note: ‘class GSegMatch’ declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ [100%] Linking CXX executable TestGFFParse /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGFFParse.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -Wl,-z,relro CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -o TestGFFParse libgff.a make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target TestGFFParse make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/libgff-dev/ -a cd obj-arm-linux-gnueabi && make -j1 install DESTDIR=/<>/debian/libgff-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/libgff-dev/usr/lib/libgff/cmake/libgffConfig.cmake -- Installing: /<>/debian/libgff-dev/usr/lib/libgff/cmake/libgffConfigVersion.cmake -- Installing: /<>/debian/libgff-dev/usr/lib/libgff.a -- Installing: /<>/debian/libgff-dev/usr/include -- Installing: /<>/debian/libgff-dev/usr/include/gff.h -- Installing: /<>/debian/libgff-dev/usr/include/gdna.h -- Installing: /<>/debian/libgff-dev/usr/include/codons.h -- Installing: /<>/debian/libgff-dev/usr/include/GVec.hh -- Installing: /<>/debian/libgff-dev/usr/include/GStr.h -- Installing: /<>/debian/libgff-dev/usr/include/GList.hh -- Installing: /<>/debian/libgff-dev/usr/include/GHash.hh -- Installing: /<>/debian/libgff-dev/usr/include/GFastaIndex.h -- Installing: /<>/debian/libgff-dev/usr/include/GFaSeqGet.h -- Installing: /<>/debian/libgff-dev/usr/include/GBase.h -- Installing: /<>/debian/libgff-dev/usr/include/GArgs.h make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name '*.gtf' | xargs chmod -x make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libgff-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libgff-dev' in '../libgff-dev_2.0.0-3_armel.deb'. dpkg-genbuildinfo --build=any -O../libgff_2.0.0-3_armel.buildinfo dpkg-genchanges --build=any -O../libgff_2.0.0-3_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-10-20T20:03:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libgff_2.0.0-3_armel.changes: ----------------------------- Format: 1.8 Date: Fri, 21 Jan 2022 16:14:04 +0100 Source: libgff Binary: libgff-dev Built-For-Profiles: cross nocheck Architecture: armel Version: 2.0.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libgff-dev - GFF/GTF parsing from cufflinks as a library Changes: libgff (2.0.0-3) unstable; urgency=medium . * Team upload. * Really fix watch file * Add missing build dependency on dh addon. Checksums-Sha1: 929bc2709d5c78429a7a27eba066602aad60481f 138896 libgff-dev_2.0.0-3_armel.deb c1f238632a7607c5059375152552609680350bfd 5796 libgff_2.0.0-3_armel.buildinfo Checksums-Sha256: 20580e271d5df20bd5750bf18d60d30830e00556fd108577e3cacd075aeb6a62 138896 libgff-dev_2.0.0-3_armel.deb 0604c0ff8587d70c66c022824ef151436e67e8f0b5f5765e052e0e38cd79e786 5796 libgff_2.0.0-3_armel.buildinfo Files: 74d744cad078ae6f256d68de3bfdab41 138896 libdevel optional libgff-dev_2.0.0-3_armel.deb 65638da1f8838850adeaa57b308d7fa5 5796 libdevel optional libgff_2.0.0-3_armel.buildinfo /<>/libgff_2.0.0-3_armel.changes.new could not be renamed to /<>/libgff_2.0.0-3_armel.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libgff Binary: libgff-dev Architecture: armel Version: 2.0.0-3 Checksums-Md5: 74d744cad078ae6f256d68de3bfdab41 138896 libgff-dev_2.0.0-3_armel.deb Checksums-Sha1: 929bc2709d5c78429a7a27eba066602aad60481f 138896 libgff-dev_2.0.0-3_armel.deb Checksums-Sha256: 20580e271d5df20bd5750bf18d60d30830e00556fd108577e3cacd075aeb6a62 138896 libgff-dev_2.0.0-3_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 20 Oct 2022 20:03:40 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2-1), binutils (= 2.39-8), binutils-common (= 2.39-8), binutils-x86-64-linux-gnu (= 2.39-8), bsdextrautils (= 2.38.1-1.1+b1), bsdutils (= 1:2.38.1-1.1+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), cmake (= 3.24.2-2), cmake-data (= 3.24.2-2), coreutils (= 9.1-1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-8), cpp-12 (= 12.2.0-5), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.10), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.14), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9+b1), dpkg-dev (= 1.21.9), dwz (= 0.14+20220924-2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-5), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-8), gcc-11-base (= 11.3.0-8), gcc-12 (= 12.2.0-5), gcc-12-base (= 12.2.0-5), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.8-2), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1), libasan6 (= 11.3.0-8), libasan8 (= 12.2.0-5), libatomic1 (= 12.2.0-5), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b1), libbinutils (= 2.39-8), libblkid1 (= 2.38.1-1.1+b1), libbrotli1 (= 1.0.9-2+b4), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.35-3), libc-dev-bin (= 2.35-3), libc6 (= 2.35-3), libc6-dev (= 2.35-3), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-5), libcom-err2 (= 1.46.6~rc1-1+b1), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.39-8), libctf0 (= 2.39-8), libcurl4 (= 7.85.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.10), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-4), libexpat1 (= 2.4.9-1), libffi8 (= 3.4.3-3), libfile-find-rule-perl (= 0.34-2), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-8), libgcc-12-dev (= 12.2.0-5), libgcc-s1 (= 12.2.0-5), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.8-2), libgomp1 (= 12.2.0-5), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.39-8), libgssapi-krb5-2 (= 1.20-1+b1), libhogweed6 (= 3.8.1-2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-5), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20-1+b1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1+b1), libkrb5support0 (= 1.20-1+b1), libldap-2.5-0 (= 2.5.13+dfsg-2+b1), liblsan0 (= 12.2.0-5), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.7-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1.1+b1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1+b1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-5), libpam-modules-bin (= 1.5.2-5), libpam-runtime (= 1.5.2-5), libpam0g (= 1.5.2-5), libpcre2-8-0 (= 10.40-1), libperl5.36 (= 5.36.0-4), libpipeline1 (= 1.5.6-3), libprocps8 (= 2:3.3.17-7+b1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-5), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-8), libsasl2-modules-db (= 2.1.28+dfsg-8), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b2), libsmartcols1 (= 2.38.1-1.1+b1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.5-4), libstdc++-12-dev (= 12.2.0-5), libstdc++6 (= 12.2.0-5), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.6-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-8), libtsan2 (= 12.2.0-5), libubsan1 (= 12.2.0-5), libuchardet0 (= 0.0.7-1), libudev1 (= 251.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-1.1+b1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 6.0.2-1), login (= 1:4.12.3+dfsg1-1), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.11.0-1+b1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.36.0-4), perl-base (= 5.36.0-4), perl-modules-5.36 (= 5.36.0-4), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7+b1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-6), tar (= 1.34+dfsg-1), usrmerge (= 33), util-linux (= 2.38.1-1.1+b1), util-linux-extra (= 2.38.1-1.1+b1), xz-utils (= 5.2.7-0.0), zlib1g (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642778044" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libgff-dev_2.0.0-3_armel.deb ---------------------------- new Debian package, version 2.0. size 138896 bytes: control archive=1220 bytes. 655 bytes, 15 lines control 1122 bytes, 18 lines md5sums Package: libgff-dev Source: libgff Version: 2.0.0-3 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 577 Section: libdevel Priority: optional Homepage: https://github.com/COMBINE-lab/libgff Description: GFF/GTF parsing from cufflinks as a library This is a simple "libraryfication" of the GFF/GTF parsing code that is used in the Cufflinks codebase. There are not many (any?) relatively lightweight GTF/GFF parsers exposing a C++ interface, and the goal of this library is to provide this functionality without the necessity of drawing in a heavy-weight dependency like SeqAn. drwxr-xr-x root/root 0 2022-01-21 15:14 ./ drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/ drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/include/ -rw-r--r-- root/root 4020 2020-07-02 16:49 ./usr/include/GArgs.h -rw-r--r-- root/root 21602 2020-07-02 16:49 ./usr/include/GBase.h -rw-r--r-- root/root 10695 2020-07-02 16:49 ./usr/include/GFaSeqGet.h -rw-r--r-- root/root 2011 2020-07-02 16:49 ./usr/include/GFastaIndex.h -rw-r--r-- root/root 16741 2020-07-02 16:49 ./usr/include/GHash.hh -rw-r--r-- root/root 21924 2020-07-02 16:49 ./usr/include/GList.hh -rw-r--r-- root/root 9706 2020-07-02 16:49 ./usr/include/GStr.h -rw-r--r-- root/root 26609 2020-07-02 16:49 ./usr/include/GVec.hh -rw-r--r-- root/root 1149 2020-07-02 16:49 ./usr/include/codons.h -rw-r--r-- root/root 435 2020-07-02 16:49 ./usr/include/gdna.h -rw-r--r-- root/root 51091 2020-07-02 16:49 ./usr/include/gff.h drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/lib/ -rw-r--r-- root/root 378596 2022-01-21 15:14 ./usr/lib/libgff.a drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/lib/libgff/ drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/lib/libgff/cmake/ -rw-r--r-- root/root 1557 2022-01-21 15:14 ./usr/lib/libgff/cmake/libgffConfig.cmake -rw-r--r-- root/root 2878 2022-01-21 15:14 ./usr/lib/libgff/cmake/libgffConfigVersion.cmake drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/share/ drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/share/doc/libgff-dev/ -rw-r--r-- root/root 625 2022-01-21 15:14 ./usr/share/doc/libgff-dev/changelog.Debian.gz -rw-r--r-- root/root 1728 2022-01-21 15:14 ./usr/share/doc/libgff-dev/copyright drwxr-xr-x root/root 0 2022-01-21 15:14 ./usr/share/doc/libgff-dev/examples/ -rw-r--r-- root/root 856 2020-07-02 16:49 ./usr/share/doc/libgff-dev/examples/TestGFFParse.cpp -rw-r--r-- root/root 20097 2022-01-21 15:14 ./usr/share/doc/libgff-dev/examples/example.gtf lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [541 B] Get:5 copy:/<>/apt_archive ./ Packages [627 B] Fetched 2131 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: libcpanel-json-xs-perl : Depends: perlapi-5.34.0 but it is not installable libparams-classify-perl : Depends: perlapi-5.34.0 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.34.0 but it is not installable libtext-xslate-perl : Depends: perlapi-5.34.0 but it is not installable Depends: libmouse-perl but it is not going to be installed libtime-moment-perl : Depends: perlapi-5.34.0 but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 6116 Build-Time: 11 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 12 Job: libgff_2.0.0-3 Lintian: error Machine Architecture: amd64 Package: libgff Package-Time: 34 Source-Version: 2.0.0-3 Space: 6116 Status: successful Version: 2.0.0-3 -------------------------------------------------------------------------------- Finished at 2022-10-20T20:03:40Z Build needed 00:00:34, 6116k disk space